BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3658c
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610794|ref|NP_218175.1| transmembrane protein [Mycobacteriu... 491 5e-137
gi|298527131|ref|ZP_07014540.1| hypothetical protein TBAG_02389 ... 488 3e-136
gi|289572304|ref|ZP_06452531.1| transmembrane protein [Mycobacte... 486 1e-135
gi|340628630|ref|YP_004747082.1| hypothetical protein MCAN_36781... 481 5e-134
gi|308369182|ref|ZP_07666675.1| conserved membrane protein [Myco... 466 2e-129
gi|289759812|ref|ZP_06519190.1| predicted protein [Mycobacterium... 440 1e-121
gi|254552769|ref|ZP_05143216.1| hypothetical protein Mtube_20357... 313 2e-83
gi|289755783|ref|ZP_06515161.1| conserved membrane protein [Myco... 289 2e-76
gi|289747493|ref|ZP_06506871.1| conserved hypothetical protein [... 258 6e-67
gi|342862007|ref|ZP_08718651.1| hypothetical protein MCOL_24070 ... 256 3e-66
gi|240173378|ref|ZP_04752036.1| putative transmembrane protein [... 253 3e-65
gi|183985115|ref|YP_001853406.1| hypothetical protein MMAR_5146 ... 246 3e-63
gi|41406515|ref|NP_959351.1| hypothetical protein MAP0417 [Mycob... 239 5e-61
gi|118466209|ref|YP_879790.1| type II secretion system protein F... 236 2e-60
gi|118619399|ref|YP_907731.1| hypothetical protein MUL_4231 [Myc... 230 1e-58
gi|108801767|ref|YP_641964.1| type II secretion system protein [... 224 1e-56
gi|118474017|ref|YP_890388.1| type II secretion system protein F... 221 1e-55
gi|315446284|ref|YP_004079163.1| Flp pilus assembly protein TadB... 215 5e-54
gi|145221977|ref|YP_001132655.1| type II secretion system protei... 214 8e-54
gi|120406354|ref|YP_956183.1| type II secretion system protein [... 208 7e-52
gi|126437755|ref|YP_001073446.1| type II secretion system protei... 205 6e-51
gi|333992580|ref|YP_004525194.1| transmembrane protein [Mycobact... 202 5e-50
gi|296165927|ref|ZP_06848400.1| bacterial type II secretion syst... 182 5e-44
gi|169627575|ref|YP_001701224.1| hypothetical protein MAB_0471 [... 157 2e-36
gi|254773479|ref|ZP_05214995.1| hypothetical protein MaviaA2_022... 135 5e-30
gi|325675226|ref|ZP_08154911.1| type II secretion system protein... 133 2e-29
gi|229494787|ref|ZP_04388543.1| bacterial type II secretion syst... 132 6e-29
gi|312138011|ref|YP_004005347.1| type ii secretion system integr... 132 7e-29
gi|226303994|ref|YP_002763952.1| hypothetical protein RER_05050 ... 130 2e-28
gi|296394990|ref|YP_003659874.1| transmembrane protein [Segnilip... 119 4e-25
gi|333917958|ref|YP_004491539.1| Type II secretion system protei... 111 1e-22
gi|326383473|ref|ZP_08205160.1| hypothetical protein SCNU_11071 ... 110 2e-22
gi|296141575|ref|YP_003648818.1| type II secretion system F doma... 109 4e-22
gi|257057541|ref|YP_003135373.1| Flp pilus assembly protein TadB... 98.2 1e-18
gi|300857635|ref|YP_003782618.1| hypothetical protein cpfrc_0021... 97.4 2e-18
gi|302205373|gb|ADL09715.1| Hypothetical protein CpC231_0221 [Co... 97.4 2e-18
gi|308275611|gb|ADO25510.1| Putative type II secretion system pr... 97.4 2e-18
gi|134096981|ref|YP_001102642.1| type II secretion system protei... 95.1 1e-17
gi|284028545|ref|YP_003378476.1| type II secretion system protei... 94.0 2e-17
gi|262200534|ref|YP_003271742.1| type II secretion system F doma... 92.4 7e-17
gi|337289879|ref|YP_004628900.1| hypothetical protein CULC22_002... 90.1 3e-16
gi|302530825|ref|ZP_07283167.1| predicted protein [Streptomyces ... 87.8 1e-15
gi|38232935|ref|NP_938702.1| hypothetical protein DIP0314 [Coryn... 87.4 2e-15
gi|259506084|ref|ZP_05748986.1| membrane protein [Corynebacteriu... 87.0 2e-15
gi|25026855|ref|NP_736909.1| hypothetical protein CE0299 [Coryne... 87.0 2e-15
gi|343926485|ref|ZP_08765990.1| hypothetical protein GOALK_060_0... 86.7 3e-15
gi|305680235|ref|ZP_07403043.1| type II secretion system F domai... 86.3 4e-15
gi|213966025|ref|ZP_03394214.1| bacterial type II secretion syst... 84.0 2e-14
gi|328906757|gb|EGG26529.1| hypothetical protein PA08_1683 [Prop... 83.6 3e-14
gi|328883372|emb|CCA56611.1| putative integral membrane protein ... 83.6 3e-14
>gi|15610794|ref|NP_218175.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|15843271|ref|NP_338308.1| hypothetical protein MT3758 [Mycobacterium tuberculosis CDC1551]
gi|31794828|ref|NP_857321.1| transmembrane protein [Mycobacterium bovis AF2122/97]
57 more sequence titles
Length=266
Score = 491 bits (1264), Expect = 5e-137, Method: Compositional matrix adjust.
Identities = 266/266 (100%), Positives = 266/266 (100%), Gaps = 0/266 (0%)
Query 1 MSGIASAALILSLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPL 60
MSGIASAALILSLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPL
Sbjct 1 MSGIASAALILSLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPL 60
Query 61 PTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADE 120
PTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADE
Sbjct 61 PTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADE 120
Query 121 TGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLM 180
TGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLM
Sbjct 121 TGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLM 180
Query 181 RAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGG 240
RAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGG
Sbjct 181 RAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGG 240
Query 241 WLLVVGLTLACAGLLWSDRITDRPVL 266
WLLVVGLTLACAGLLWSDRITDRPVL
Sbjct 241 WLLVVGLTLACAGLLWSDRITDRPVL 266
>gi|298527131|ref|ZP_07014540.1| hypothetical protein TBAG_02389 [Mycobacterium tuberculosis 94_M4241A]
gi|298496925|gb|EFI32219.1| hypothetical protein TBAG_02389 [Mycobacterium tuberculosis 94_M4241A]
Length=266
Score = 488 bits (1257), Expect = 3e-136, Method: Compositional matrix adjust.
Identities = 265/266 (99%), Positives = 265/266 (99%), Gaps = 0/266 (0%)
Query 1 MSGIASAALILSLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPL 60
MSGIASAALILSLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPL
Sbjct 1 MSGIASAALILSLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPL 60
Query 61 PTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADE 120
PTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADE
Sbjct 61 PTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADE 120
Query 121 TGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLM 180
TGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLM
Sbjct 121 TGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLM 180
Query 181 RAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGG 240
RAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGG
Sbjct 181 RAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGG 240
Query 241 WLLVVGLTLACAGLLWSDRITDRPVL 266
WLLVVGLTLACAGLLW DRITDRPVL
Sbjct 241 WLLVVGLTLACAGLLWPDRITDRPVL 266
>gi|289572304|ref|ZP_06452531.1| transmembrane protein [Mycobacterium tuberculosis K85]
gi|289536735|gb|EFD41313.1| transmembrane protein [Mycobacterium tuberculosis K85]
Length=266
Score = 486 bits (1251), Expect = 1e-135, Method: Compositional matrix adjust.
Identities = 265/266 (99%), Positives = 265/266 (99%), Gaps = 0/266 (0%)
Query 1 MSGIASAALILSLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPL 60
MSGIASAALILSLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPL
Sbjct 1 MSGIASAALILSLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPL 60
Query 61 PTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADE 120
PTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADE
Sbjct 61 PTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADE 120
Query 121 TGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLM 180
TGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAV WQLGSDHGLAIASLM
Sbjct 121 TGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVWWQLGSDHGLAIASLM 180
Query 181 RAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGG 240
RAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGG
Sbjct 181 RAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGG 240
Query 241 WLLVVGLTLACAGLLWSDRITDRPVL 266
WLLVVGLTLACAGLLWSDRITDRPVL
Sbjct 241 WLLVVGLTLACAGLLWSDRITDRPVL 266
>gi|340628630|ref|YP_004747082.1| hypothetical protein MCAN_36781 [Mycobacterium canettii CIPT
140010059]
gi|340006820|emb|CCC46009.1| putative conserved transmembrane protein [Mycobacterium canettii
CIPT 140010059]
Length=266
Score = 481 bits (1238), Expect = 5e-134, Method: Compositional matrix adjust.
Identities = 262/266 (99%), Positives = 263/266 (99%), Gaps = 0/266 (0%)
Query 1 MSGIASAALILSLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPL 60
MSGIASAALILSLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVG AALLPL
Sbjct 1 MSGIASAALILSLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGAAALLPL 60
Query 61 PTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADE 120
TVVAVAVLGATLGLRY RRRRYLRRSREG+ALEAALELVVGELRAGAHPVRAFSIAADE
Sbjct 61 STVVAVAVLGATLGLRYCRRRRYLRRSREGRALEAALELVVGELRAGAHPVRAFSIAADE 120
Query 121 TGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLM 180
TGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLM
Sbjct 121 TGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLM 180
Query 181 RAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGG 240
RAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGG
Sbjct 181 RAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGG 240
Query 241 WLLVVGLTLACAGLLWSDRITDRPVL 266
WLLVVGLTLACAGLLWSDRITDRPVL
Sbjct 241 WLLVVGLTLACAGLLWSDRITDRPVL 266
>gi|308369182|ref|ZP_07666675.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308378427|ref|ZP_07668749.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308380757|ref|ZP_07669274.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|308406205|ref|ZP_07669540.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|308328418|gb|EFP17269.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308352454|gb|EFP41305.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308360493|gb|EFP49344.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|308364119|gb|EFP52970.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
Length=251
Score = 466 bits (1198), Expect = 2e-129, Method: Compositional matrix adjust.
Identities = 250/251 (99%), Positives = 251/251 (100%), Gaps = 0/251 (0%)
Query 16 VVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPLPTVVAVAVLGATLGL 75
+VLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPLPTVVAVAVLGATLGL
Sbjct 1 MVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPLPTVVAVAVLGATLGL 60
Query 76 RYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAAR 135
RYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAAR
Sbjct 61 RYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAAR 120
Query 136 ARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSA 195
ARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSA
Sbjct 121 ARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSA 180
Query 196 RVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLL 255
RVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLL
Sbjct 181 RVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLL 240
Query 256 WSDRITDRPVL 266
WSDRITDRPVL
Sbjct 241 WSDRITDRPVL 251
>gi|289759812|ref|ZP_06519190.1| predicted protein [Mycobacterium tuberculosis T85]
gi|289715376|gb|EFD79388.1| predicted protein [Mycobacterium tuberculosis T85]
Length=241
Score = 440 bits (1131), Expect = 1e-121, Method: Compositional matrix adjust.
Identities = 238/239 (99%), Positives = 239/239 (100%), Gaps = 0/239 (0%)
Query 11 LSLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPLPTVVAVAVLG 70
+SLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPLPTVVAVAVLG
Sbjct 1 MSLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPLPTVVAVAVLG 60
Query 71 ATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALR 130
ATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALR
Sbjct 61 ATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALR 120
Query 131 AVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAER 190
AVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAER
Sbjct 121 AVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAER 180
Query 191 QRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTL 249
QRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTL
Sbjct 181 QRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTL 239
>gi|254552769|ref|ZP_05143216.1| hypothetical protein Mtube_20357 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=213
Score = 313 bits (801), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 199/213 (94%), Positives = 203/213 (96%), Gaps = 0/213 (0%)
Query 54 VAALLPLPTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRA 113
+AALLP+ T V VAVL ATLGLRYRRRRRYLRRSRE QALEAALELVV ELRAGAHPVRA
Sbjct 1 MAALLPILTAVPVAVLSATLGLRYRRRRRYLRRSREAQALEAALELVVRELRAGAHPVRA 60
Query 114 FSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHG 173
FSIAADETGGPVAVALRAVAAR+ L A+VTAGLLAA RSSALPAYWERL VCWQLGSDHG
Sbjct 61 FSIAADETGGPVAVALRAVAARSLLVAEVTAGLLAATRSSALPAYWERLGVCWQLGSDHG 120
Query 174 LAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFL 233
LAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFL
Sbjct 121 LAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFL 180
Query 234 LTGRVGGWLLVVGLTLACAGLLWSDRITDRPVL 266
LTGRVGGWLLVVGLTLACAGLLWSDRITDRPVL
Sbjct 181 LTGRVGGWLLVVGLTLACAGLLWSDRITDRPVL 213
>gi|289755783|ref|ZP_06515161.1| conserved membrane protein [Mycobacterium tuberculosis EAS054]
gi|289696370|gb|EFD63799.1| conserved membrane protein [Mycobacterium tuberculosis EAS054]
Length=221
Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 169/170 (99%), Positives = 169/170 (99%), Gaps = 0/170 (0%)
Query 97 LELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALP 156
ELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALP
Sbjct 52 FELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALP 111
Query 157 AYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPL 216
AYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPL
Sbjct 112 AYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPL 171
Query 217 LGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITDRPVL 266
LGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITDRPVL
Sbjct 172 LGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITDRPVL 221
>gi|289747493|ref|ZP_06506871.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289688021|gb|EFD55509.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=165
Score = 258 bits (659), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 139/140 (99%), Positives = 139/140 (99%), Gaps = 0/140 (0%)
Query 127 VALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRD 186
ALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRD
Sbjct 26 FALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRD 85
Query 187 VAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVG 246
VAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVG
Sbjct 86 VAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVG 145
Query 247 LTLACAGLLWSDRITDRPVL 266
LTLACAGLLWSDRITDRPVL
Sbjct 146 LTLACAGLLWSDRITDRPVL 165
>gi|342862007|ref|ZP_08718651.1| hypothetical protein MCOL_24070 [Mycobacterium colombiense CECT
3035]
gi|342130547|gb|EGT83856.1| hypothetical protein MCOL_24070 [Mycobacterium colombiense CECT
3035]
Length=265
Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 169/263 (65%), Positives = 202/263 (77%), Gaps = 1/263 (0%)
Query 1 MSGIASAALILSLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPL 60
M+ + L LSLALVV+ SPR RL+ R + VG R W V +LPL
Sbjct 1 MNAPLAGVLPLSLALVVVRPSPRGRLSAARR-RHLPTVGPREAGWVAAAVGCVAVIVLPL 59
Query 61 PTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADE 120
TV+ +AV+GAT GLRYRRRR R + EG AL++ALE++VGELRAG+HPVRAF +AAD+
Sbjct 60 TTVLCLAVVGATAGLRYRRRRSVRRGTAEGDALQSALEVLVGELRAGSHPVRAFGVAADD 119
Query 121 TGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLM 180
+ G VA +L +VAARARLGADV AGL AAAR SALP +W+RLA+CW+L SD+GL IA+LM
Sbjct 120 SEGAVAASLCSVAARARLGADVAAGLAAAARGSALPVHWQRLALCWRLASDNGLGIATLM 179
Query 181 RAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGG 240
RAAQRD+AERQRFSARVS+ MAGARA+A ILA LP+LGVLLGQLIGARPL+FL G GG
Sbjct 180 RAAQRDIAERQRFSARVSSSMAGARATATILATLPVLGVLLGQLIGARPLAFLFGGHTGG 239
Query 241 WLLVVGLTLACAGLLWSDRITDR 263
WLL+VG TLAC GLLW+DRI DR
Sbjct 240 WLLLVGSTLACVGLLWADRIADR 262
>gi|240173378|ref|ZP_04752036.1| putative transmembrane protein [Mycobacterium kansasii ATCC 12478]
Length=265
Score = 253 bits (645), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 172/263 (66%), Positives = 199/263 (76%), Gaps = 1/263 (0%)
Query 1 MSGIASAALILSLALVVLPGSPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALLPL 60
M+G+A A+L L+ ALVV P SPR R RR + AR V W G VG +LPL
Sbjct 1 MNGLAVASLTLASALVVAPSSPR-RWQVLRPHRRQDPLRARWVLWVGGGALVGAVVVLPL 59
Query 61 PTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADE 120
TV+AVAV+G T RYRRRR R RE ++LEAA +++VGELR G HPV+AF AADE
Sbjct 60 TTVLAVAVVGTTATQRYRRRRCGRRAIREAKSLEAAFDVLVGELRVGIHPVQAFGTAADE 119
Query 121 TGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLM 180
T G VA ++RAVAARARLGADVT GL A AR SALP +WERLA WQL SDHGLAIA+LM
Sbjct 120 TDGAVAASMRAVAARARLGADVTGGLRAVARMSALPTHWERLAGYWQLASDHGLAIATLM 179
Query 181 RAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGG 240
RAAQ D+ ERQRFSA V++G+AGARA+A IL+ LPLLGVLLGQLIGARP+SFLL G GG
Sbjct 180 RAAQSDIVERQRFSASVASGLAGARATANILSGLPLLGVLLGQLIGARPVSFLLNGHAGG 239
Query 241 WLLVVGLTLACAGLLWSDRITDR 263
WLLV+G+ L CAGLLWSDRITDR
Sbjct 240 WLLVIGVALVCAGLLWSDRITDR 262
>gi|183985115|ref|YP_001853406.1| hypothetical protein MMAR_5146 [Mycobacterium marinum M]
gi|183178441|gb|ACC43551.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=267
Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 161/242 (67%), Positives = 186/242 (77%), Gaps = 1/242 (0%)
Query 23 RCRLTPDDT-GRRVLLVGARRVAWGVGCVAVGVAALLPLPTVVAVAVLGATLGLRYRRRR 81
R R++ +D G L R + + C G ++PL TV+A V+ T R RRR
Sbjct 23 RRRISVNDVRGHSNWLSATRWLGCLLACALAGAVLVMPLTTVLAAVVVAGTASRRRRRRL 82
Query 82 RYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGAD 141
R REG+ALEAALE++VGELR GAHPVRAF +AADET GPVA A+R VAA ARLGAD
Sbjct 83 VRARGVREGRALEAALEILVGELRVGAHPVRAFGVAADETDGPVAAAMRGVAAHARLGAD 142
Query 142 VTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGM 201
VT GL AAAR SALP++WERLAV WQL SDHGLAIA+LMRAAQRDVA+RQRFSA+VSAG+
Sbjct 143 VTGGLRAAARRSALPSHWERLAVYWQLASDHGLAIATLMRAAQRDVAQRQRFSAKVSAGL 202
Query 202 AGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRIT 261
AGARASA ILA LP+LGV+LGQLIGA+PL+FLL G +GGWLLVVGL LA GL WSDRIT
Sbjct 203 AGARASAGILAGLPVLGVVLGQLIGAQPLAFLLGGHLGGWLLVVGLALAAGGLWWSDRIT 262
Query 262 DR 263
DR
Sbjct 263 DR 264
>gi|41406515|ref|NP_959351.1| hypothetical protein MAP0417 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41394864|gb|AAS02734.1| hypothetical protein MAP_0417 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336460807|gb|EGO39692.1| Flp pilus assembly protein TadB [Mycobacterium avium subsp. paratuberculosis
S397]
Length=267
Score = 239 bits (609), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 168/248 (68%), Positives = 197/248 (80%), Gaps = 5/248 (2%)
Query 19 PGSPRCRLTPDDTGRRVLLVGARRVA---WGVGCVAVGVAALLPLPTVVAVAVLGATLGL 75
P SPR RL +G R ARR+A W A+LPLP+V+A AV+ AT GL
Sbjct 19 PPSPRRRLGVAVSGSR--RPSARRLAGLGWVAAGAGCAALAVLPLPSVLAGAVVAATAGL 76
Query 76 RYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAAR 135
R+RR R R + EG+ALE AL+++VGELRAG+HPVRAF +AA ET GPVAVALR+VAAR
Sbjct 77 RHRRHGRIRRAAGEGRALETALDVLVGELRAGSHPVRAFDVAAGETAGPVAVALRSVAAR 136
Query 136 ARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSA 195
ARLGADV AGL AA+RSSA P +W+RLA+CW+L DHGL IA+LMRAAQRD+AERQRFSA
Sbjct 137 ARLGADVAAGLAAASRSSARPEHWQRLALCWRLAGDHGLGIATLMRAAQRDIAERQRFSA 196
Query 196 RVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLL 255
RVS+ +AGARA+AAILA LP+LGVLLGQLIGARPL FLL G+VGGWLL+VG TLACAGLL
Sbjct 197 RVSSSLAGARATAAILAALPVLGVLLGQLIGARPLDFLLGGQVGGWLLLVGATLACAGLL 256
Query 256 WSDRITDR 263
W+DRI DR
Sbjct 257 WADRIVDR 264
>gi|118466209|ref|YP_879790.1| type II secretion system protein F [Mycobacterium avium 104]
gi|118167496|gb|ABK68393.1| bacterial type II secretion system protein F domain [Mycobacterium
avium 104]
Length=267
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 169/248 (69%), Positives = 197/248 (80%), Gaps = 5/248 (2%)
Query 19 PGSPRCRLTPDDTGRRVLLVGARRVA---WGVGCVAVGVAALLPLPTVVAVAVLGATLGL 75
P SPR RL TG R ARR+A W A+LPLP+V+A AV+ AT GL
Sbjct 19 PPSPRRRLGVAVTGSR--RPSARRLAGLGWVAAGAGCAALAVLPLPSVLAGAVVAATAGL 76
Query 76 RYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAAR 135
R+RRR R R + EG+ALE AL+++VGELRAG+HPVRAF +AA ET GPVAVALR+VAAR
Sbjct 77 RHRRRGRIRRAAGEGRALETALDVLVGELRAGSHPVRAFDVAAGETAGPVAVALRSVAAR 136
Query 136 ARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSA 195
ARLGADV AGL AA+R SA P +W+RLA+CW+L DHGL IA+LMRAAQRD+AERQRFSA
Sbjct 137 ARLGADVAAGLAAASRGSARPEHWQRLALCWRLAGDHGLGIATLMRAAQRDIAERQRFSA 196
Query 196 RVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLL 255
RVS+ +AGARA+AAILA LP+LGVLLGQLIGARPL FLL G+VGGWLL+VG TLACAGLL
Sbjct 197 RVSSSLAGARATAAILAALPVLGVLLGQLIGARPLDFLLGGQVGGWLLLVGATLACAGLL 256
Query 256 WSDRITDR 263
W+DRI DR
Sbjct 257 WADRIVDR 264
>gi|118619399|ref|YP_907731.1| hypothetical protein MUL_4231 [Mycobacterium ulcerans Agy99]
gi|118571509|gb|ABL06260.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=264
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/211 (67%), Positives = 162/211 (77%), Gaps = 1/211 (0%)
Query 23 RCRLTPDDT-GRRVLLVGARRVAWGVGCVAVGVAALLPLPTVVAVAVLGATLGLRYRRRR 81
R R++ +D G L R + + C G ++PL TV+AVAV+ T R RRR
Sbjct 23 RRRISVNDVRGHSNWLSATRWLGCLLACALAGAVLVMPLTTVLAVAVVAGTASRRRRRRL 82
Query 82 RYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGAD 141
R REG ALEAALE++VGELR GAHPVRAF +AADET GPVA A+R VAA ARLGAD
Sbjct 83 VRARGVREGWALEAALEILVGELRVGAHPVRAFGVAADETDGPVAAAMRGVAAHARLGAD 142
Query 142 VTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGM 201
VT GL AAAR SALPA+WERLAV WQL SDHGLAIA+LMRAAQRDVA+RQRFSA+VSAG+
Sbjct 143 VTGGLRAAARRSALPAHWERLAVYWQLASDHGLAIATLMRAAQRDVAQRQRFSAKVSAGL 202
Query 202 AGARASAAILAILPLLGVLLGQLIGARPLSF 232
AGARASA ILA LP+LGV+LGQLIGA+PL+F
Sbjct 203 AGARASAGILAGLPVLGVVLGQLIGAQPLAF 233
>gi|108801767|ref|YP_641964.1| type II secretion system protein [Mycobacterium sp. MCS]
gi|119870918|ref|YP_940870.1| type II secretion system protein [Mycobacterium sp. KMS]
gi|108772186|gb|ABG10908.1| type II secretion system protein [Mycobacterium sp. MCS]
gi|119697007|gb|ABL94080.1| type II secretion system protein [Mycobacterium sp. KMS]
Length=262
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/173 (66%), Positives = 141/173 (82%), Gaps = 0/173 (0%)
Query 89 EGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLA 148
E ++L++ALE++VGELR GAHPV AF AA E G V+ +LRAVAARARLGADV AGL
Sbjct 85 EAESLQSALEVLVGELRVGAHPVAAFETAAGEIDGQVSDSLRAVAARARLGADVAAGLHD 144
Query 149 AARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASA 208
R S+L + W+R+AVCWQL HGL+IA+LM+ AQRD+AERQRFS+R SAGMAGARA+A
Sbjct 145 TGRKSSLASQWDRIAVCWQLAQTHGLSIAALMQTAQRDIAERQRFSSRASAGMAGARATA 204
Query 209 AILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRIT 261
A+LA LP+LG+ LGQ+IGA P+ LL G G WLL++G+TL+CAGLLWSDRIT
Sbjct 205 AVLAGLPVLGICLGQMIGADPVRLLLGGGAGAWLLLIGVTLSCAGLLWSDRIT 257
>gi|118474017|ref|YP_890388.1| type II secretion system protein F [Mycobacterium smegmatis str.
MC2 155]
gi|118175304|gb|ABK76200.1| bacterial type II secretion system protein F domain [Mycobacterium
smegmatis str. MC2 155]
Length=210
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/205 (60%), Positives = 150/205 (74%), Gaps = 0/205 (0%)
Query 57 LLPLPTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSI 116
+LPLP + V+ T+ +R R R R E AL+ AL+++VGELR GAHPV AF
Sbjct 1 MLPLPVALTAGVVAGTVVVRRRDRAAAQHRRDESAALQGALDVLVGELRVGAHPVDAFGA 60
Query 117 AADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAI 176
AA E+GGPVA +RAVAARARLGADV AGL AR+S LP +W+RLAVCW+L HGLA+
Sbjct 61 AAGESGGPVAEGMRAVAARARLGADVAAGLDDVARASQLPGHWQRLAVCWRLAQTHGLAL 120
Query 177 ASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTG 236
+LMRAA D+ ER+RFSARV A MAG R +A +LA LPL G+ LGQ IGA P++FL+
Sbjct 121 GTLMRAAHEDIVERERFSARVRAAMAGPRTTALVLAGLPLAGIALGQAIGAAPVAFLVAS 180
Query 237 RVGGWLLVVGLTLACAGLLWSDRIT 261
GGWLLV+G+ LACAGLLWSDRIT
Sbjct 181 GAGGWLLVIGVVLACAGLLWSDRIT 205
>gi|315446284|ref|YP_004079163.1| Flp pilus assembly protein TadB [Mycobacterium sp. Spyr1]
gi|315264587|gb|ADU01329.1| Flp pilus assembly protein TadB [Mycobacterium sp. Spyr1]
Length=261
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 114/173 (66%), Positives = 133/173 (77%), Gaps = 0/173 (0%)
Query 89 EGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLA 148
E AL+ AL+++VGELR GAHPV A ++A E G +A +L AVAARA LGADV AGL A
Sbjct 84 EATALQDALDVLVGELRVGAHPVAAITVAGHEARGRIAESLNAVAARALLGADVPAGLRA 143
Query 149 AARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASA 208
R S P +W+RLAVCWQL HGLAIA+LMRAAQRD+ ER+RF RV +GMAGARA+A
Sbjct 144 EGRRSPSPGHWDRLAVCWQLAQTHGLAIAALMRAAQRDITERERFRGRVESGMAGARATA 203
Query 209 AILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRIT 261
ILA LP+LGVLLG IGA PL+FLL+G GGWLL+VG CAGLLWSDRIT
Sbjct 204 VILAGLPVLGVLLGHAIGAEPLAFLLSGGAGGWLLLVGTVFVCAGLLWSDRIT 256
>gi|145221977|ref|YP_001132655.1| type II secretion system protein [Mycobacterium gilvum PYR-GCK]
gi|145214463|gb|ABP43867.1| type II secretion system protein [Mycobacterium gilvum PYR-GCK]
Length=261
Score = 214 bits (546), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 114/173 (66%), Positives = 133/173 (77%), Gaps = 0/173 (0%)
Query 89 EGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLA 148
E AL+ AL+++VGELR GAHPV A ++A E G +A +L AVAARA LGADV AGL A
Sbjct 84 EAAALQDALDVLVGELRVGAHPVAAITVAGHEARGRIAESLNAVAARALLGADVPAGLRA 143
Query 149 AARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASA 208
R S P +W+RLAVCWQL HGLAIA+LMRAAQRD+ ER+RF RV +GMAGARA+A
Sbjct 144 EGRRSPSPGHWDRLAVCWQLAQTHGLAIAALMRAAQRDITERERFRGRVESGMAGARATA 203
Query 209 AILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRIT 261
ILA LP+LGVLLG IGA PL+FLL+G GGWLL+VG CAGLLWSDRIT
Sbjct 204 VILAGLPVLGVLLGHAIGAEPLAFLLSGGAGGWLLLVGTVFVCAGLLWSDRIT 256
>gi|120406354|ref|YP_956183.1| type II secretion system protein [Mycobacterium vanbaalenii PYR-1]
gi|119959172|gb|ABM16177.1| type II secretion system protein [Mycobacterium vanbaalenii PYR-1]
Length=260
Score = 208 bits (529), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/173 (66%), Positives = 130/173 (76%), Gaps = 0/173 (0%)
Query 89 EGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLA 148
E AL+ AL++++GELR GAHPV A + AA E+ +A AL AVAARA LGADV AGL A
Sbjct 83 EAAALQGALDVLIGELRVGAHPVAAMNTAAQESDARIAGALGAVAARALLGADVAAGLRA 142
Query 149 AARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASA 208
R S LP +W+RLAVCW L GLAIA+LM AAQRD+AER+RF RV AG+AGARA+A
Sbjct 143 QGRRSLLPGHWDRLAVCWHLAQAQGLAIATLMLAAQRDIAERERFRGRVEAGLAGARATA 202
Query 209 AILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRIT 261
AILA LP+LGVLLG IGA PLSFL +G GGWLLV G C GLLWSDRIT
Sbjct 203 AILAGLPVLGVLLGHAIGAEPLSFLFSGGFGGWLLVTGTVFVCCGLLWSDRIT 255
>gi|126437755|ref|YP_001073446.1| type II secretion system protein [Mycobacterium sp. JLS]
gi|126237555|gb|ABO00956.1| type II secretion system protein [Mycobacterium sp. JLS]
Length=262
Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 118/173 (69%), Positives = 143/173 (83%), Gaps = 0/173 (0%)
Query 89 EGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLA 148
E ++L++ALE++VGELR GAHPV AF AA E G VA +LRAVAARARLGADV AGL
Sbjct 85 ESESLQSALEVLVGELRVGAHPVAAFETAAGEIDGQVADSLRAVAARARLGADVAAGLHD 144
Query 149 AARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASA 208
AR S+L + W+R+AVCWQL HGL+IA+LM+ AQRD+AERQRFS+RVSAGMAGARA+A
Sbjct 145 TARKSSLASQWDRIAVCWQLAQTHGLSIAALMQTAQRDIAERQRFSSRVSAGMAGARATA 204
Query 209 AILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRIT 261
A+LA LP+LG+ LGQ+IGA P LL G GGWLL++G+TL+CAGLLWSDRIT
Sbjct 205 AVLAGLPVLGIGLGQMIGADPGRLLLGGGAGGWLLLIGVTLSCAGLLWSDRIT 257
>gi|333992580|ref|YP_004525194.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333488548|gb|AEF37940.1| putative transmembrane protein [Mycobacterium sp. JDM601]
Length=227
Score = 202 bits (513), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 118/172 (69%), Positives = 137/172 (80%), Gaps = 2/172 (1%)
Query 93 LEAALELVVGELRAGAHPVRAFSIAADETG-GPVAVALRAVAARARLGADVTAGLLAAAR 151
LEAAL+++VGELR GAHPVRAF+ AA ETG VA LR V ARARLGADV GL AA
Sbjct 52 LEAALDVLVGELRIGAHPVRAFAAAAAETGHDSVAAGLRGVVARARLGADVVTGLRDAAG 111
Query 152 SSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAIL 211
SSA+P++WERLA WQLG + GLA+A+LM+AA D+ RQRFSA+ AGMAGARASA IL
Sbjct 112 SSAMPSHWERLAAYWQLGGEQGLAVAALMQAAHSDITARQRFSAQAEAGMAGARASATIL 171
Query 212 AILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITDR 263
LP+LGVLLGQ+IGARP++FLL G GG L VVG++L CAGLLWSDRIT R
Sbjct 172 GCLPVLGVLLGQVIGARPVAFLLGGP-GGVLSVVGVSLICAGLLWSDRITGR 222
>gi|296165927|ref|ZP_06848400.1| bacterial type II secretion system protein F domain protein [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295898719|gb|EFG78252.1| bacterial type II secretion system protein F domain protein [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=130
Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/126 (80%), Positives = 113/126 (90%), Gaps = 0/126 (0%)
Query 138 LGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARV 197
LGADV AGL AAARSSALPA+W+RLA+CWQL SDHGLA+A+LMRAAQRD+AERQRFSARV
Sbjct 2 LGADVAAGLRAAARSSALPAHWDRLALCWQLASDHGLAVATLMRAAQRDIAERQRFSARV 61
Query 198 SAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWS 257
++ MAGARA+AAILA LP+LG++LGQLIGARPL FLL G GGWLLV G TLAC GL W+
Sbjct 62 ASNMAGARATAAILAALPVLGLVLGQLIGARPLGFLLDGHAGGWLLVTGSTLACVGLWWA 121
Query 258 DRITDR 263
DRITDR
Sbjct 122 DRITDR 127
>gi|169627575|ref|YP_001701224.1| hypothetical protein MAB_0471 [Mycobacterium abscessus ATCC 19977]
gi|169239542|emb|CAM60570.1| Conserved hypothetical transmembrane protein [Mycobacterium abscessus]
Length=258
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/178 (56%), Positives = 120/178 (68%), Gaps = 3/178 (1%)
Query 86 RSREGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAG 145
S E + L++VVGELR GAHPVRAF IAA E G A A+AARARLG +V
Sbjct 81 ESEELDCTASGLDVVVGELRVGAHPVRAFEIAAVELNGAAGEAFAAIAARARLGVNVDRA 140
Query 146 LLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGAR 205
L RS A W R+ W L HGLA+A L+ A + D+ ERQ+F+ARV+AG+AG R
Sbjct 141 L---PRSVPARAQWNRITRSWSLAQRHGLAVADLLDACRADLQERQQFTARVNAGLAGPR 197
Query 206 ASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITDR 263
A+A +L LP+ G+ LGQ+IGARPLS L G VGG LLVVG+TLACAGLLW+D IT +
Sbjct 198 ATAVVLTGLPVAGIGLGQMIGARPLSVLCAGGVGGALLVVGVTLACAGLLWADAITGK 255
>gi|254773479|ref|ZP_05214995.1| hypothetical protein MaviaA2_02210 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=97
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/93 (83%), Positives = 86/93 (93%), Gaps = 0/93 (0%)
Query 171 DHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPL 230
DHGL IA+LMRAAQRD+AERQRFSARVS+ +AGARA+AAILA LP+LGVLLGQLIGARPL
Sbjct 2 DHGLGIATLMRAAQRDIAERQRFSARVSSSLAGARATAAILAALPVLGVLLGQLIGARPL 61
Query 231 SFLLTGRVGGWLLVVGLTLACAGLLWSDRITDR 263
FLL G+VGGWLL+VG TLACAGLLW+DRI DR
Sbjct 62 DFLLGGQVGGWLLLVGATLACAGLLWADRIVDR 94
>gi|325675226|ref|ZP_08154911.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
gi|325553932|gb|EGD23609.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
Length=224
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/171 (50%), Positives = 104/171 (61%), Gaps = 2/171 (1%)
Query 95 AALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSA 154
A LE V+GEL GAHP A +AA E G +VALR A RARLG GL+ S
Sbjct 55 AGLEAVIGELGVGAHPAAACDVAAQECRGDASVALRTAAGRARLGGSAAGGLVLP--GSV 112
Query 155 LPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAIL 214
+ RLA W + GL +A L++AA+ D+ R RF AR AG+AGARA+AA+LA L
Sbjct 113 VADELSRLAEAWSVAESRGLPLAELLQAARTDLQGRSRFRARADAGLAGARATAAVLAGL 172
Query 215 PLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITDRPV 265
P+LG+ LGQL+GA P+ L G +G LLV G L GL W+DRI DR V
Sbjct 173 PVLGIGLGQLMGAAPVRVLAGGGLGSALLVAGTVLGALGLAWTDRIVDRAV 223
>gi|229494787|ref|ZP_04388543.1| bacterial type II secretion system protein F domain protein [Rhodococcus
erythropolis SK121]
gi|229318283|gb|EEN84148.1| bacterial type II secretion system protein F domain protein [Rhodococcus
erythropolis SK121]
Length=262
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/204 (46%), Positives = 120/204 (59%), Gaps = 2/204 (0%)
Query 60 LPTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAAD 119
LP A VL TL LR RR R + L + LE+++ EL GAHP A S+A +
Sbjct 58 LPAGCAAVVLAGTLILRGRRANAAETRDLSQKMLLSGLEVLIAELSVGAHPAAASSVAGE 117
Query 120 ETGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASL 179
E G V+ R+ ARARLG A A S + + R+ W++ HGLA+A L
Sbjct 118 ECIGEVSAVFRSAGARARLGGSAAAAF--AVPDSCIEREFSRIGSVWRVADQHGLALAEL 175
Query 180 MRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVG 239
+ A + D+ R+RF R AG+AGARA+AA+LA LPLLG+ LGQL+GA PL L G +G
Sbjct 176 LGAVRTDMLGRRRFRQRTEAGLAGARATAAVLAFLPLLGIGLGQLMGASPLRVLFGGGLG 235
Query 240 GWLLVVGLTLACAGLLWSDRITDR 263
G LLV+G AGLLW+DRIT +
Sbjct 236 GVLLVIGTACVSAGLLWTDRITAK 259
>gi|312138011|ref|YP_004005347.1| type ii secretion system integral membrane subunit [Rhodococcus
equi 103S]
gi|311887350|emb|CBH46661.1| putative type II secretion system integral membrane subunit [Rhodococcus
equi 103S]
Length=231
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/171 (49%), Positives = 103/171 (61%), Gaps = 2/171 (1%)
Query 95 AALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSA 154
A LE V+GEL GAHP A +AA E G + ALR A RARLG GL+ S
Sbjct 62 AGLEAVIGELGVGAHPAAACDVAAQECRGDASAALRTAAGRARLGGSAAGGLVLP--GSV 119
Query 155 LPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAIL 214
+ RLA W + GL +A L++AA+ D+ R RF AR AG+AGARA+AA+LA L
Sbjct 120 VADELSRLAEAWSVAESRGLPLAELLQAARTDLQGRSRFRARADAGLAGARATAAVLAGL 179
Query 215 PLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITDRPV 265
P+LG+ LGQL+GA P+ L G +G LLV G L GL W+DRI DR V
Sbjct 180 PVLGIGLGQLMGAAPVRVLAGGGLGSALLVAGTVLGALGLAWTDRIVDRAV 230
>gi|226303994|ref|YP_002763952.1| hypothetical protein RER_05050 [Rhodococcus erythropolis PR4]
gi|226183109|dbj|BAH31213.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
Length=262
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/197 (46%), Positives = 117/197 (60%), Gaps = 2/197 (1%)
Query 65 AVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADETGGP 124
A VL TL R RR + R + L + LE+++ EL GAHP A S+A +E G
Sbjct 63 AAVVLAGTLIFRGRRAKAAENRDLSQKMLLSGLEVLIAELSVGAHPAVASSVAGEECSGE 122
Query 125 VAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQ 184
V+ R+ ARARLG A A S + + R+ W++ HGLA+A L+ A +
Sbjct 123 VSAVFRSAGARARLGGSAAAAF--AVPDSCIEREFSRIGSVWRVADQHGLALAELLGAVR 180
Query 185 RDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLV 244
D+ R+RF R AG+AGARA+AA+LA LPLLG+ LGQL+GA PL L G +GG LLV
Sbjct 181 TDMLGRRRFRQRTEAGLAGARATAAVLAFLPLLGIGLGQLMGASPLRVLFGGGLGGVLLV 240
Query 245 VGLTLACAGLLWSDRIT 261
+G AGLLW+DRIT
Sbjct 241 IGTACVSAGLLWTDRIT 257
>gi|296394990|ref|YP_003659874.1| transmembrane protein [Segniliparus rotundus DSM 44985]
gi|296182137|gb|ADG99043.1| putative transmembrane protein [Segniliparus rotundus DSM 44985]
Length=285
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/183 (49%), Positives = 113/183 (62%), Gaps = 14/183 (7%)
Query 92 ALEAALELVVGELRAGAHPVRAFSIAADET-------GGPVAVALRAVAARARLGADVTA 144
A++AAL VV ELR GAHP AF+ AA E G VA +R VAARARLG DV
Sbjct 99 AVQAALMAVVDELRVGAHPAHAFASAAQEGALAATCGGREVARTMREVAARARLGGDVGQ 158
Query 145 GLLAAAR---SSALP---AYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVS 198
GL A S+ L A+WERLA CW+L G+ IA ++ + + D +R RF+ R
Sbjct 159 GLRRRAAAARSAGLGLGGAFWERLASCWELSHQEGVPIAQVLGSVRADAVQRVRFAERAD 218
Query 199 AGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSD 258
A +AGARA+A IL+ LPLL V+LGQ +GA+PL L + G +LL++G CAGL WS
Sbjct 219 AALAGARATAKILSGLPLLCVVLGQSLGAQPLRVLFSDS-GSFLLMIGCGFLCAGLAWSR 277
Query 259 RIT 261
RIT
Sbjct 278 RIT 280
>gi|333917958|ref|YP_004491539.1| Type II secretion system protein [Amycolicicoccus subflavus DQS3-9A1]
gi|333480179|gb|AEF38739.1| Type II secretion system protein [Amycolicicoccus subflavus DQS3-9A1]
Length=268
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/208 (41%), Positives = 122/208 (59%), Gaps = 10/208 (4%)
Query 53 GVAALLPLPTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVR 112
G A + L V VAV G+ R R + R+ + AL+ V+ ELR GAHP
Sbjct 65 GPAPVFALFAVCGVAVKRTQRGMAERAHRADIGRTAD------ALDAVIAELRVGAHPAT 118
Query 113 AFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDH 172
A + AAD++ G + AARARLGA+V+AG S + ++ W++ H
Sbjct 119 ACATAADQSQGTARIVFARAAARARLGAEVSAGF----SDSQFASPTAQIGAAWRISETH 174
Query 173 GLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSF 232
G+ +A L+ A + D+ ER F +++ AG++GARA+A ILA+LP+ G+ LG+++GA PL
Sbjct 175 GVRLAELLAAVKSDLKERNAFESQLHAGLSGARATATILAMLPVAGIGLGEMMGAAPLWT 234
Query 233 LLTGRVGGWLLVVGLTLACAGLLWSDRI 260
LL+ +GG LL G LA +GLLWSDRI
Sbjct 235 LLSTTIGGALLAAGTLLAVSGLLWSDRI 262
>gi|326383473|ref|ZP_08205160.1| hypothetical protein SCNU_11071 [Gordonia neofelifaecis NRRL
B-59395]
gi|326197879|gb|EGD55066.1| hypothetical protein SCNU_11071 [Gordonia neofelifaecis NRRL
B-59395]
Length=265
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/211 (42%), Positives = 123/211 (59%), Gaps = 15/211 (7%)
Query 64 VAVAVLGATL-GLRYRRRRRYLRR---SREGQALEAALELVVGELRAGAHPVRAFSIAAD 119
VA V GA + GL R+RRR R R+ + L AAL ++ EL GA V+A AA
Sbjct 59 VAPGVAGALVAGLVTRQRRRSCREALADRDSRQLIAALAVMSAELSVGAPVVQACRAAAA 118
Query 120 -----ETGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGL 174
+ G V L +AARA LG D G +A R+ + RLA W + ++GL
Sbjct 119 DLARIDHDGAVGPELARMAARAELGGD--PGPESATRAGPV----RRLARSWAVSLEYGL 172
Query 175 AIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLL 234
+ ++ A + D+ RQ F+AR AG+AG RA+A +LA LP++G++LGQ +GA P LL
Sbjct 173 PVGDVLAALREDLVSRQDFAARTRAGLAGPRATAVVLAGLPVVGLVLGQAMGAHPARVLL 232
Query 235 TGRVGGWLLVVGLTLACAGLLWSDRITDRPV 265
R+GG LLVVG L+ AG++W+DRI D+ V
Sbjct 233 ESRIGGVLLVVGTALSVAGVVWADRIADQAV 263
>gi|296141575|ref|YP_003648818.1| type II secretion system F domain-containing protein [Tsukamurella
paurometabola DSM 20162]
gi|296029709|gb|ADG80479.1| Type II secretion system F domain protein [Tsukamurella paurometabola
DSM 20162]
Length=269
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/222 (43%), Positives = 125/222 (57%), Gaps = 9/222 (4%)
Query 45 WGVGCVAVGVAALL--PLPTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVG 102
WG +AV ALL P + ++G L R R R R A+ A ++ +V
Sbjct 40 WGWLALAVPAGALLVGPGQALAGALLMGTGRELWSRSSARRARTDRL-SAILAGVDAMVA 98
Query 103 ELRAGAHPVRAFSIAA-DETGGPVAVALRAVAARARLGADVTAGL-LAAARSSALPAYWE 160
EL GAHP A + A D V +A RA LG DV AGL L A+ S+A WE
Sbjct 99 ELSVGAHPAAACATAGRDAEDSHVRSVFAEMAGRAELGGDVAAGLRLHASESTA----WE 154
Query 161 RLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVL 220
RLA W+ G+ HG+ + L+ + + D+ R+R+ R + +AGARA+A +LA LP+LGV
Sbjct 155 RLAAAWETGTRHGIGMGELLASVREDLRARERYERRAHSALAGARATAQVLAALPVLGVA 214
Query 221 LGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 262
+GQLIGA PL LL+ GG LLVVG+ L CAGLLWS I D
Sbjct 215 MGQLIGADPLGTLLSTGAGGVLLVVGVCLTCAGLLWSRSIAD 256
>gi|257057541|ref|YP_003135373.1| Flp pilus assembly protein TadB [Saccharomonospora viridis DSM
43017]
gi|256587413|gb|ACU98546.1| Flp pilus assembly protein TadB [Saccharomonospora viridis DSM
43017]
Length=282
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 93/170 (55%), Gaps = 8/170 (4%)
Query 100 VVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAY- 158
VV ELRAGAHPV A A E P+A LR +AA AR TA R++ P
Sbjct 112 VVTELRAGAHPVTAVENVAREAPRPLADRLRGLAASARFSGVPTAE--PEVRAACGPGME 169
Query 159 -----WERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAI 213
+ RLA W L + HG+ +A + A RD+ R + ++ A +AG RA AA+LA
Sbjct 170 HVDRIFGRLATSWALSARHGIPLADVFDAVHRDMETTARSARQLDARLAGPRAGAAVLAF 229
Query 214 LPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITDR 263
LP+ G++LG+ +GA P+ L+ VG L VVG L AG+ W+ +T R
Sbjct 230 LPVAGLVLGEAMGAAPIPVLMGTSVGSVLFVVGAALLVAGVAWTSSMTGR 279
>gi|300857635|ref|YP_003782618.1| hypothetical protein cpfrc_00218 [Corynebacterium pseudotuberculosis
FRC41]
gi|300685089|gb|ADK28011.1| putative membrane protein [Corynebacterium pseudotuberculosis
FRC41]
Length=256
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/251 (33%), Positives = 124/251 (50%), Gaps = 37/251 (14%)
Query 33 RRVLLVGARRVAWGVGCVAV--GVAALLPL----PTVVAVAVLGATLGLRYRRRRRYLRR 86
RRV+ A R W ++V VA + PL P VV+ A++ AT+ + +RR +
Sbjct 21 RRVVGKKATR-QWQKKAISVILVVALIFPLRHHIPLVVSGALIVATIVNSWNKRRLEASQ 79
Query 87 SREGQALEAALELVVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGL 146
RE + + AL + G+LRAG +VAL VA A + L
Sbjct 80 RREQEEISTALGSLAGDLRAGVE---------------ASVALENVAQNLPESA-LKDTL 123
Query 147 LAAARSSAL----PAYW----------ERLAVCWQLGSDHGLAIASLMRAAQRDVAERQR 192
+AA+RSS + AYW E++ W+L +G+A+A L+ + + E R
Sbjct 124 MAASRSSRIGGSASAYWQQRALAIHGIEKITHAWRLSERYGIALAPLLEKNRASLDEDLR 183
Query 193 FSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACA 252
+ R A + GA+A+A IL LP +G+LLG+ +G L FL R+G LL++G L C
Sbjct 184 HAERTQAALQGAKATAYILTALPFVGILLGRGMGVNALGFLFHTRIGAVLLILGTLLVCV 243
Query 253 GLLWSDRITDR 263
G LWS I ++
Sbjct 244 GNLWSQAIMEK 254
>gi|302205373|gb|ADL09715.1| Hypothetical protein CpC231_0221 [Corynebacterium pseudotuberculosis
C231]
gi|340539279|gb|ADL20121.2| Hypothetical protein Cp1002_0218 [Corynebacterium pseudotuberculosis
1002]
gi|341824038|gb|AEK91559.1| Hypothetical protein CpPAT10_0224 [Corynebacterium pseudotuberculosis
PAT10]
Length=251
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/228 (33%), Positives = 114/228 (50%), Gaps = 34/228 (14%)
Query 54 VAALLPL----PTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAH 109
VA + PL P VV+ A++ AT+ + +RR + RE + + AL + G+LRAG
Sbjct 38 VALIFPLRHHIPLVVSGALIVATIVNSWNKRRLEASQRREQEEISTALGSLAGDLRAGVE 97
Query 110 PVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSAL----PAYW------ 159
+VAL VA A + L+AA+RSS + AYW
Sbjct 98 ---------------ASVALENVAQNLPESA-LKDTLMAASRSSRIGGSASAYWQQRALA 141
Query 160 ----ERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILP 215
E++ W+L +G+A+A L+ + + E R + R A + GA+A+A IL LP
Sbjct 142 IHGIEKITHAWRLSERYGIALAPLLEKNRASLDEDLRHAERTQAALQGAKATAYILTALP 201
Query 216 LLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITDR 263
+G+LLG+ +G L FL R+G LL++G L C G LWS I ++
Sbjct 202 FVGILLGRGMGVNALGFLFHTRIGAVLLILGTLLVCVGNLWSQAIMEK 249
>gi|308275611|gb|ADO25510.1| Putative type II secretion system protein [Corynebacterium pseudotuberculosis
I19]
Length=266
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/228 (33%), Positives = 114/228 (50%), Gaps = 34/228 (14%)
Query 54 VAALLPL----PTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAH 109
VA + PL P VV+ A++ AT+ + +RR + RE + + AL + G+LRAG
Sbjct 53 VALIFPLRHHIPLVVSGALIVATIVNSWNKRRLEASQRREQEEISTALGSLAGDLRAGVE 112
Query 110 PVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSAL----PAYW------ 159
+VAL VA A + L+AA+RSS + AYW
Sbjct 113 ---------------ASVALENVAQNLPESA-LKDTLMAASRSSRIGGSASAYWQQRALA 156
Query 160 ----ERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILP 215
E++ W+L +G+A+A L+ + + E R + R A + GA+A+A IL LP
Sbjct 157 IHGIEKITHAWRLSERYGIALAPLLEKNRASLDEDLRHAERTQAALQGAKATAYILTALP 216
Query 216 LLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITDR 263
+G+LLG+ +G L FL R+G LL++G L C G LWS I ++
Sbjct 217 FVGILLGRGMGVNALGFLFHTRIGAVLLILGTLLVCVGNLWSQAIMEK 264
>gi|134096981|ref|YP_001102642.1| type II secretion system protein [Saccharopolyspora erythraea
NRRL 2338]
gi|291006274|ref|ZP_06564247.1| type II secretion system protein [Saccharopolyspora erythraea
NRRL 2338]
gi|133909604|emb|CAL99716.1| type II secretion system protein [Saccharopolyspora erythraea
NRRL 2338]
Length=267
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/197 (43%), Positives = 113/197 (58%), Gaps = 1/197 (0%)
Query 67 AVLGATLGLRYRRRRRYLRRSREGQA-LEAALELVVGELRAGAHPVRAFSIAADETGGPV 125
AV A LG RY R RR R E A L + L+V LRAGAHP A AA ++ +
Sbjct 66 AVALAVLGRRYVRSRRSFRVGVERSAELSGGIRLLVAGLRAGAHPAVAAEGAAADSAPAI 125
Query 126 AVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQR 185
+ R +A+ A+LG D+ L + L RL W+L HG+A+A L+ A +R
Sbjct 126 SGVFRDLASAAKLGGDIPTVLDNGGHPAELRQPLARLGRAWRLAERHGVALADLLDAVRR 185
Query 186 DVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVV 245
DV R F + + MAG RA+AA+LA LPLLG+LLG+ +GA PL+ L G +LVV
Sbjct 186 DVDHRVAFIRDLESKMAGPRATAAMLAGLPLLGLLLGEAVGAAPLAVLTGQAFGQAVLVV 245
Query 246 GLTLACAGLLWSDRITD 262
G+ L CAGL W+ R+T+
Sbjct 246 GVALLCAGLFWTLRLTE 262
>gi|284028545|ref|YP_003378476.1| type II secretion system protein [Kribbella flavida DSM 17836]
gi|283807838|gb|ADB29677.1| type II secretion system protein [Kribbella flavida DSM 17836]
Length=272
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 99/276 (36%), Positives = 135/276 (49%), Gaps = 27/276 (9%)
Query 6 SAALILSLALVVLPGSPRC--RLTPDDTGRRV-----LLVGARR----------VAWGVG 48
+AA+IL L VLP R RLT + RR L RR VA G+G
Sbjct 7 AAAMILIAVLTVLPRRSRALHRLTSARSDRRSDGAAGLARSVRRRLVPLALSAIVALGIG 66
Query 49 CVAVGVAALLPLPTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGA 108
+++G AAL+ T+ VL R R RR +L + Q +EA + + EL AG
Sbjct 67 -LSLGAAALVS--TLAVGVVLAVITTQRARARRLHLADQKRAQVIEAC-DTLAAELAAGR 122
Query 109 HPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERLAVCWQL 168
P A AA+ V LR AA ARLG DV A L AA + + + LA WQ+
Sbjct 123 PPHDALEGAAE-----VCAELRPAAAAARLGGDVPAVLQLAADTPGAESL-KALAAAWQV 176
Query 169 GSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGAR 228
G A+A+++ + + +++ +AGAR +A +LAILPL G LLG +GA
Sbjct 177 ADRSGAAVAAIVDRLAASLRAEESLRRQIATNLAGARTTARLLAILPLFGTLLGYALGAD 236
Query 229 PLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITDRP 264
PL+FL T G L GL LA GL W++R+ P
Sbjct 237 PLTFLTTTIPGAACLTAGLALAITGLWWTERLATYP 272
>gi|262200534|ref|YP_003271742.1| type II secretion system F domain-containing protein [Gordonia
bronchialis DSM 43247]
gi|262083881|gb|ACY19849.1| Type II secretion system F domain protein [Gordonia bronchialis
DSM 43247]
Length=264
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/184 (43%), Positives = 106/184 (58%), Gaps = 10/184 (5%)
Query 87 SREGQALEAALELVVGELRAGAHPVRAFSIAADET---GGPVAVA--LRAVAARARLGAD 141
R + AL +++ EL G P RA +A E GG VA L +A RA LG
Sbjct 80 DRRIDDMTRALSMMISELSVGTPPNRAAQVAVVELRRRGGDCQVADGLEGMACRAELGGA 139
Query 142 VTAGLLAAARSSAL--PAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSA 199
V + AA + A P W+R+ V WQ HGL +A L+ A + D+ R+ F R A
Sbjct 140 V---IDAAEKWDATWGPVSWQRIGVAWQTAERHGLPMADLLGALRSDLLARRAFVDRTRA 196
Query 200 GMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDR 259
G+AG RA+A +LA LP+LG+ LGQ GARPL LL G +GG LLV+G +LA GL+W++R
Sbjct 197 GLAGPRATALVLAGLPVLGIALGQATGARPLGVLLGGGIGGLLLVIGTSLAATGLVWTER 256
Query 260 ITDR 263
+T R
Sbjct 257 LTAR 260
>gi|337289879|ref|YP_004628900.1| hypothetical protein CULC22_00263 [Corynebacterium ulcerans BR-AD22]
gi|334696005|gb|AEG80802.1| putative membrane protein [Corynebacterium ulcerans 809]
gi|334698185|gb|AEG82981.1| putative membrane protein [Corynebacterium ulcerans BR-AD22]
Length=251
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/250 (29%), Positives = 121/250 (49%), Gaps = 20/250 (8%)
Query 21 SPRCRLTPDDTGRRVLLVGARRVAWGVGCVAVGVAALL------PLPTVVAVAVLGATLG 74
SP+ R+ RR W + V + A++ +P VV+ ++ AT+
Sbjct 13 SPKRRVIGKKATRR----------WQKKAITVALVAVIIFPFRHHIPLVVSGGLIVATVV 62
Query 75 LRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAF-SIAADETGGPVAVALRAVA 133
+ +RR + + ++ + + L + G+LRAG RA ++A + L A +
Sbjct 63 NAWNKRRSEVSQRKQQEEISTVLGSLSGDLRAGVEASRALENVAQTLPESALRDTLMAAS 122
Query 134 ARARLGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRF 193
+RLG +A + R+ A+ E++ W+L +G+A+A L+ + + E
Sbjct 123 RSSRLGG--SASVYWQQRAVAIHGI-EKITHAWRLSERYGIALAPLLEKNRASLDEDLCH 179
Query 194 SARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAG 253
R A M GA+A+A IL LP G+LLG+ +G L FLL R+G LL++G L C G
Sbjct 180 VERTQAAMQGAKATAYILTALPFAGILLGRGMGVNALEFLLHTRIGAVLLILGTLLVCVG 239
Query 254 LLWSDRITDR 263
LWS I ++
Sbjct 240 NLWSQAIMEK 249
>gi|302530825|ref|ZP_07283167.1| predicted protein [Streptomyces sp. AA4]
gi|302439720|gb|EFL11536.1| predicted protein [Streptomyces sp. AA4]
Length=155
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/164 (44%), Positives = 88/164 (54%), Gaps = 13/164 (7%)
Query 100 VVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYW 159
+V ELRAGAHPV A AAD +A L +A ARL + SSALPA
Sbjct 1 MVSELRAGAHPVTAAEAAADAVP-ELAGELHNLATAARLDGTL--------ESSALPA-- 49
Query 160 ERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGV 219
+A W L HGL IA + AA+RDV F R+ A MAG R SA +L +LP+ +
Sbjct 50 --VAQSWNLARRHGLPIADALEAARRDVDAEVAFIRRLHAKMAGPRMSAIVLTVLPVGCL 107
Query 220 LLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITDR 263
+GQLIGA PL+ L +G LV G L AG WS +T+R
Sbjct 108 AMGQLIGANPLAVLTETLIGQAFLVAGAALLWAGTAWSRALTNR 151
>gi|38232935|ref|NP_938702.1| hypothetical protein DIP0314 [Corynebacterium diphtheriae NCTC
13129]
gi|38199193|emb|CAE48818.1| Putative membrane protein [Corynebacterium diphtheriae]
Length=248
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/219 (37%), Positives = 118/219 (54%), Gaps = 15/219 (6%)
Query 50 VAVGVAALLPL------PTVVAVAVLGATL--GLRYRRRRRYLRRSREGQALEAALELVV 101
V++ LLP+ P ++A ++ AT+ + RR R R ++E AL +AL ++
Sbjct 28 VSLAALVLLPIMLVIWEPVMIAAVLITATVIRTVMGIRRNRADRTTQE--ALSSALGIIA 85
Query 102 GELRAGAHPVRAFSIAADE--TGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYW 159
G+LR G A + A E T P+A A A A RAR G L A S A
Sbjct 86 GDLRCGLGTWDALARVAQEPTTHAPLAAACAAAARRARAGGSAADVL---ADYSHSIAGL 142
Query 160 ERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGV 219
+R+A W+L HG+++A L+ ++ +R R R A + GA+A+A +L++LPL G+
Sbjct 143 QRVARVWKLSETHGISVAPLVEQLHNEIDDRLRHRDRTKAALQGAQATAIVLSLLPLFGL 202
Query 220 LLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSD 258
+G +GA L+FLL +G LL+VG L CAGLLWS
Sbjct 203 GMGIGLGAPVLAFLLNNAIGQTLLIVGTALQCAGLLWSQ 241
>gi|259506084|ref|ZP_05748986.1| membrane protein [Corynebacterium efficiens YS-314]
gi|259166372|gb|EEW50926.1| membrane protein [Corynebacterium efficiens YS-314]
Length=224
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/220 (35%), Positives = 110/220 (50%), Gaps = 11/220 (5%)
Query 49 CVAVGVAALLPLPTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGA 108
CVA+ A + TVVA+ G + R +R R + L L L +G LRAGA
Sbjct 5 CVALFAATGIDPATVVALLTAGLVVSWRLKRGRTSRVTRAQTTVLAGFLGLCIGNLRAGA 64
Query 109 HPVRAFSIA-ADETG-----GPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERL 162
A A A TG GP VAL A A R R G A L+ A +RL
Sbjct 65 PMADAMDHALAHTTGSTGSAGPTTVALTAAARRVRSGGSGAAVLIDAPTMD-----LQRL 119
Query 163 AVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLG 222
W++ HG+ + L+ + + ++R +A + G +A+A ILA+LPL GVL+G
Sbjct 120 GTIWEVSERHGIPLVRLLDQLKHRLEAQERHRQASAAQLQGPQATAVILALLPLAGVLMG 179
Query 223 QLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 262
+GA P+ FL G VGG LL+ G+ L+ AG + +++I +
Sbjct 180 TAMGADPIGFLTGGGVGGILLITGVLLSAAGFILTEKILE 219
>gi|25026855|ref|NP_736909.1| hypothetical protein CE0299 [Corynebacterium efficiens YS-314]
gi|23492135|dbj|BAC17109.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length=281
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/220 (35%), Positives = 110/220 (50%), Gaps = 11/220 (5%)
Query 49 CVAVGVAALLPLPTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGA 108
CVA+ A + TVVA+ G + R +R R + L L L +G LRAGA
Sbjct 62 CVALFAATGIDPATVVALLTAGLVVSWRLKRGRTSRVTRAQTTVLAGFLGLCIGNLRAGA 121
Query 109 HPVRAFSIA-ADETG-----GPVAVALRAVAARARLGADVTAGLLAAARSSALPAYWERL 162
A A A TG GP VAL A A R R G A L+ A +RL
Sbjct 122 PMADAMDHALAHTTGSTGSAGPTTVALTAAARRVRSGGSGAAVLIDAPTMD-----LQRL 176
Query 163 AVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLG 222
W++ HG+ + L+ + + ++R +A + G +A+A ILA+LPL GVL+G
Sbjct 177 GTIWEVSERHGIPLVRLLDQLKHRLEAQERHRQASAAQLQGPQATAVILALLPLAGVLMG 236
Query 223 QLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITD 262
+GA P+ FL G VGG LL+ G+ L+ AG + +++I +
Sbjct 237 TAMGADPIGFLTGGGVGGILLITGVLLSAAGFILTEKILE 276
>gi|343926485|ref|ZP_08765990.1| hypothetical protein GOALK_060_01490 [Gordonia alkanivorans NBRC
16433]
gi|343763723|dbj|GAA12916.1| hypothetical protein GOALK_060_01490 [Gordonia alkanivorans NBRC
16433]
Length=288
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/176 (41%), Positives = 99/176 (57%), Gaps = 12/176 (6%)
Query 100 VVGELRAGAHPVRAFSIAADE------TGG----PVAVALRAVAARARLGADVTAGL--L 147
++ EL GA PV A +A E GG +A L A+A+RA LG AG
Sbjct 109 MISELSVGAPPVHACEVAVAELRRRTADGGRGCSEIADGLEAMASRASLGGSAIAGPEPT 168
Query 148 AAARSSALPAYWERLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARAS 207
+ ++ A W R+ V WQ +GL + + A + D+ R+ F+ R AG++G RA+
Sbjct 169 PGSEDASGAASWRRIGVAWQTAEQYGLPMVDTLAALRSDLRSRRGFADRTRAGLSGPRAT 228
Query 208 AAILAILPLLGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITDR 263
A +LA LPLLG+ LGQ GA P+ LL G +GG LL+VG LA AG+ WS+RIT +
Sbjct 229 AMVLAGLPLLGIALGQATGAGPIQVLLGGGLGGVLLMVGTVLAAAGVAWSERITGK 284
>gi|305680235|ref|ZP_07403043.1| type II secretion system F domain protein [Corynebacterium matruchotii
ATCC 14266]
gi|305659766|gb|EFM49265.1| type II secretion system F domain protein [Corynebacterium matruchotii
ATCC 14266]
Length=290
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/223 (32%), Positives = 111/223 (50%), Gaps = 15/223 (6%)
Query 47 VGCVAVGVAAL-LPLPTVVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELR 105
+G V VG A + PT+VA G T + RR R + +R+ L L+VGEL+
Sbjct 51 IGGVVVGAATVGQHFPTLVAAVFAGGTAMMMLRRMRARRQAARQRAESATMLTLIVGELQ 110
Query 106 AGAHPVRAFSIAADETGGP-----VAVALRAVAARARLGADVTAGLLAAARSSALPAYWE 160
AGA A + P + VA R A GA++ + A
Sbjct 111 AGATMGAALTACLPTLTEPELRREITVAARRCATGGSAGAELEQSPILA---------LS 161
Query 161 RLAVCWQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVL 220
+ W++ +G+A+A ++ + + + R +R A + GA A+A +LA+LPLLG++
Sbjct 162 LMGHAWRIAETNGMALAGVLDNIRHRIDHQNRHESRTKAALQGANATAIVLALLPLLGMV 221
Query 221 LGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITDR 263
+G IG +FL +G VGG +L+ G++ CAG+LWSD I +
Sbjct 222 MGHAIGVNVPAFLTSGGVGGLILIAGVSAECAGILWSDHIIQK 264
>gi|213966025|ref|ZP_03394214.1| bacterial type II secretion system protein F domain protein [Corynebacterium
amycolatum SK46]
gi|213951320|gb|EEB62713.1| bacterial type II secretion system protein F domain protein [Corynebacterium
amycolatum SK46]
Length=290
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/218 (36%), Positives = 110/218 (51%), Gaps = 32/218 (14%)
Query 60 LPTVVAVAVLGATLG--LRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIA 117
+P V+A +LG T G +R RR RR + A+ ALE + +LRAGA
Sbjct 86 IPGVIAGLLLGRTAGAVVRAVGERRCERREADSAAV--ALETLTAQLRAGA--------- 134
Query 118 ADETGGPVAVALRAVAARARLGADVTA---GLLAAARSSALPAYWE---------RLAVC 165
+ AL A AA R D+T L AA + WE R+
Sbjct 135 ------AASRALNAAAAEVRRAEDMTVLADHLAHAAHRANFADPWETEESSEQLRRIGRM 188
Query 166 WQLGSDHGLAIASLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLI 225
W + HGL++A L+ A+ D+ RQ ++ SA +AG R + AILA LP+ G+++GQ
Sbjct 189 WTVAQQHGLSLAGLLDCARGDLQARQAHRSQTSAALAGPRMTIAILASLPVFGLIMGQAF 248
Query 226 GARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRITDR 263
GA P FL G +GG +LV+G+ L CAG+ W+ I DR
Sbjct 249 GASPFEFLSRG-IGGIVLVIGVGLVCAGIEWAVAIIDR 285
>gi|328906757|gb|EGG26529.1| hypothetical protein PA08_1683 [Propionibacterium humerusii P08]
Length=205
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/202 (35%), Positives = 110/202 (55%), Gaps = 9/202 (4%)
Query 63 VVAVAVLGATLGLRYRRRRRYLRRSREGQALEAALELVVGELRAGAHPVRAFSIAADETG 122
V+AVAV G T+ + RR+R+ + + G+ + A ++ G + G P S+A +
Sbjct 5 VMAVAV-GETVLVVVRRQRQRAQILKGGREVARATRVLAGRVSVGEIP----SVALEHVA 59
Query 123 GPVAVALRAVAARAR-LGADVTAGLLAAARSSALPAYWERLAVCWQLGSDHGLAIASLMR 181
G V V A+A RA+ +G V+ L+ ++ + A LA W L + G +A R
Sbjct 60 GDVEVL--ALARRAQTVGGSVSDALIVTSQQPGM-AGLVPLAHAWHLAATTGAPLAPAAR 116
Query 182 AAQRDVAERQRFSARVSAGMAGARASAAILAILPLLGVLLGQLIGARPLSFLLTGRVGGW 241
+ A R R A + + +A ARAS I+ +LPL+G+L+G ++GARP FL T +G
Sbjct 117 SVAEGTARRARLEATLDSELAAARASGRIMGLLPLVGLLMGHVVGARPTVFLTTTWLGRA 176
Query 242 LLVVGLTLACAGLLWSDRITDR 263
L+ LACAG+LWS+ + DR
Sbjct 177 CLLGSTLLACAGVLWSETLADR 198
>gi|328883372|emb|CCA56611.1| putative integral membrane protein [Streptomyces venezuelae ATCC
10712]
Length=321
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/165 (45%), Positives = 88/165 (54%), Gaps = 8/165 (4%)
Query 100 VVGELRAGAHPVRAFSIAADETGGPVAVALRAVAARARLGADVTAGLLAAARSSALPAYW 159
VVGELRAG P +A S AA ETG + AV A AR G DV L AA
Sbjct 156 VVGELRAGWQPAQALSFAARETG-ALGAEEAAVLAAARFGGDVPEALRKAADQDGADGL- 213
Query 160 ERLAVCWQLGSDHGLAIA---SLMRAAQRDVAERQRFSARVSAGMAGARASAAILAILPL 216
+A CWQ+ D G +A + AA RD E++ R+ A +AGA A+ A+LA+LPL
Sbjct 214 AGMAACWQVAVDGGAGLAAGLDRLEAALRDHREQRE---RLRAELAGAWATVAVLAVLPL 270
Query 217 LGVLLGQLIGARPLSFLLTGRVGGWLLVVGLTLACAGLLWSDRIT 261
GV LG +GA PL LL G LVVG L AGL W+ RI
Sbjct 271 AGVALGAALGADPLRVLLHTPAGLGCLVVGGALEAAGLWWAARIV 315
Lambda K H
0.326 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 404210254038
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40