BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3660c

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|167970805|ref|ZP_02553082.1|  hypothetical protein MtubH3_2330...   658    0.0   
gi|15610796|ref|NP_218177.1|  hypothetical protein Rv3660c [Mycob...   658    0.0   
gi|306801289|ref|ZP_07437957.1|  hypothetical protein TMHG_02720 ...   656    0.0   
gi|306778015|ref|ZP_07416352.1|  hypothetical protein TMAG_00149 ...   656    0.0   
gi|253800701|ref|YP_003033702.1|  hypothetical protein TBMG_03700...   656    0.0   
gi|340628632|ref|YP_004747084.1|  hypothetical protein MCAN_36801...   655    0.0   
gi|289555921|ref|ZP_06445131.1|  conserved hypothetical protein [...   655    0.0   
gi|289445254|ref|ZP_06434998.1|  conserved hypothetical protein [...   655    0.0   
gi|289755785|ref|ZP_06515163.1|  conserved hypothetical protein [...   654    0.0   
gi|31794830|ref|NP_857323.1|  hypothetical protein Mb3684c [Mycob...   654    0.0   
gi|289572306|ref|ZP_06452533.1|  conserved hypothetical protein [...   651    0.0   
gi|254233156|ref|ZP_04926482.1|  conserved hypothetical protein [...   550    2e-154
gi|240173380|ref|ZP_04752038.1|  hypothetical protein MkanA1_2896...   497    1e-138
gi|15843273|ref|NP_338310.1|  hypothetical protein MT3760 [Mycoba...   489    4e-136
gi|183985117|ref|YP_001853408.1|  hypothetical protein MMAR_5148 ...   447    1e-123
gi|289441090|ref|ZP_06430834.1|  conserved hypothetical protein [...   435    4e-120
gi|118619401|ref|YP_907733.1|  hypothetical protein MUL_4233 [Myc...   416    3e-114
gi|118466891|ref|YP_879752.1|  hypothetical protein MAV_0470 [Myc...   378    6e-103
gi|333992582|ref|YP_004525196.1|  hypothetical protein JDM601_394...   374    1e-101
gi|342862005|ref|ZP_08718649.1|  hypothetical protein MCOL_24060 ...   370    2e-100
gi|336460809|gb|EGO39694.1|  helicase/secretion neighborhood CpaE...   365    6e-99 
gi|41406513|ref|NP_959349.1|  hypothetical protein MAP0415 [Mycob...   354    1e-95 
gi|296166715|ref|ZP_06849139.1|  conserved hypothetical protein [...   332    5e-89 
gi|120406369|ref|YP_956198.1|  hypothetical protein Mvan_5422 [My...   320    3e-85 
gi|315446286|ref|YP_004079165.1|  ATPase involved in chromosome p...   298    6e-79 
gi|145221975|ref|YP_001132653.1|  hypothetical protein Mflv_1383 ...   298    1e-78 
gi|254822026|ref|ZP_05227027.1|  hypothetical protein MintA_18982...   285    6e-75 
gi|118472134|ref|YP_890391.1|  hypothetical protein MSMEG_6171 [M...   284    1e-74 
gi|108801769|ref|YP_641966.1|  hypothetical protein Mmcs_4806 [My...   280    4e-73 
gi|126437757|ref|YP_001073448.1|  hypothetical protein Mjls_5193 ...   279    5e-73 
gi|169627536|ref|YP_001701185.1|  hypothetical protein MAB_0432 [...   247    2e-63 
gi|157144133|dbj|BAF80050.1|  smmB [Rhodococcus rhodochrous]           214    2e-53 
gi|343926483|ref|ZP_08765988.1|  hypothetical protein GOALK_060_0...   194    2e-47 
gi|229494816|ref|ZP_04388572.1|  conserved hypothetical protein [...   190    3e-46 
gi|226303992|ref|YP_002763950.1|  hypothetical protein RER_05030 ...   189    9e-46 
gi|296394992|ref|YP_003659876.1|  hypothetical protein Srot_2610 ...   188    1e-45 
gi|331694290|ref|YP_004330529.1|  helicase/secretion neighborhood...   184    2e-44 
gi|296141577|ref|YP_003648820.1|  hypothetical protein Tpau_3909 ...   182    1e-43 
gi|258650975|ref|YP_003200131.1|  hypothetical protein Namu_0728 ...   180    3e-43 
gi|111021315|ref|YP_704287.1|  hypothetical protein RHA1_ro04339 ...   176    4e-42 
gi|226363659|ref|YP_002781441.1|  hypothetical protein ROP_42490 ...   174    1e-41 
gi|325675228|ref|ZP_08154913.1|  hypothetical protein HMPREF0724_...   168    1e-39 
gi|312138009|ref|YP_004005345.1|  membrane protein [Rhodococcus e...   168    1e-39 
gi|262200532|ref|YP_003271740.1|  hypothetical protein Gbro_0517 ...   159    5e-37 
gi|257057543|ref|YP_003135375.1|  hypothetical protein Svir_35930...   155    7e-36 
gi|54022322|ref|YP_116564.1|  hypothetical protein nfa3580 [Nocar...   147    2e-33 
gi|269129024|ref|YP_003302394.1|  hypothetical protein Tcur_4839 ...   141    2e-31 
gi|300790610|ref|YP_003770901.1|  hypothetical protein AMED_8806 ...   141    2e-31 
gi|326383475|ref|ZP_08205162.1|  hypothetical protein SCNU_11081 ...   135    1e-29 
gi|256374430|ref|YP_003098090.1|  hypothetical protein Amir_0275 ...   134    2e-29 


>gi|167970805|ref|ZP_02553082.1| hypothetical protein MtubH3_23300 [Mycobacterium tuberculosis 
H37Ra]
 gi|254552771|ref|ZP_05143218.1| hypothetical protein Mtube_20367 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|294992920|ref|ZP_06798611.1| hypothetical protein Mtub2_00035 [Mycobacterium tuberculosis 
210]
 17 more sequence titles
 Length=357

 Score =  658 bits (1698),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 350/350 (100%), Positives = 350/350 (100%), Gaps = 0/350 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct  8    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  67

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct  68   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  127

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct  128  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  187

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct  188  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  247

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct  248  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  307

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct  308  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  357


>gi|15610796|ref|NP_218177.1| hypothetical protein Rv3660c [Mycobacterium tuberculosis H37Rv]
 gi|148663522|ref|YP_001285045.1| hypothetical protein MRA_3694 [Mycobacterium tuberculosis H37Ra]
 gi|148824863|ref|YP_001289617.1| hypothetical protein TBFG_13690 [Mycobacterium tuberculosis F11]
 20 more sequence titles
 Length=350

 Score =  658 bits (1697),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 350/350 (100%), Positives = 350/350 (100%), Gaps = 0/350 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350


>gi|306801289|ref|ZP_07437957.1| hypothetical protein TMHG_02720 [Mycobacterium tuberculosis SUMu008]
 gi|308351903|gb|EFP40754.1| hypothetical protein TMHG_02720 [Mycobacterium tuberculosis SUMu008]
Length=357

 Score =  656 bits (1693),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct  8    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  67

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            THVSVLTGTE ATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct  68   THVSVLTGTEGATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  127

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct  128  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  187

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct  188  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  247

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct  248  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  307

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct  308  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  357


>gi|306778015|ref|ZP_07416352.1| hypothetical protein TMAG_00149 [Mycobacterium tuberculosis SUMu001]
 gi|306974132|ref|ZP_07486793.1| hypothetical protein TMJG_00909 [Mycobacterium tuberculosis SUMu010]
 gi|307081841|ref|ZP_07491011.1| hypothetical protein TMKG_00899 [Mycobacterium tuberculosis SUMu011]
 gi|308213544|gb|EFO72943.1| hypothetical protein TMAG_00149 [Mycobacterium tuberculosis SUMu001]
 gi|308356404|gb|EFP45255.1| hypothetical protein TMJG_00909 [Mycobacterium tuberculosis SUMu010]
 gi|308360495|gb|EFP49346.1| hypothetical protein TMKG_00899 [Mycobacterium tuberculosis SUMu011]
Length=357

 Score =  656 bits (1693),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct  8    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  67

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            THVSVLTGTEAATATWAA ITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct  68   THVSVLTGTEAATATWAAVITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  127

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct  128  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  187

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct  188  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  247

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct  248  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  307

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct  308  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  357


>gi|253800701|ref|YP_003033702.1| hypothetical protein TBMG_03700 [Mycobacterium tuberculosis KZN 
1435]
 gi|297636336|ref|ZP_06954116.1| hypothetical protein MtubK4_19520 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297733329|ref|ZP_06962447.1| hypothetical protein MtubKR_19655 [Mycobacterium tuberculosis 
KZN R506]
 gi|313660661|ref|ZP_07817541.1| hypothetical protein MtubKV_19655 [Mycobacterium tuberculosis 
KZN V2475]
 gi|253322204|gb|ACT26807.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
Length=357

 Score =  656 bits (1692),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct  8    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  67

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct  68   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  127

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct  128  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  187

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct  188  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  247

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRG SPGGLRAAEVADVAGVPL
Sbjct  248  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGSSPGGLRAAEVADVAGVPL  307

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct  308  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  357


>gi|340628632|ref|YP_004747084.1| hypothetical protein MCAN_36801 [Mycobacterium canettii CIPT 
140010059]
 gi|340006822|emb|CCC46011.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=350

 Score =  655 bits (1691),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            THVSVLTGTEA TATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct  61   THVSVLTGTEAPTATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350


>gi|289555921|ref|ZP_06445131.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289440553|gb|EFD23046.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|328460430|gb|AEB05853.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
Length=350

 Score =  655 bits (1691),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRG SPGGLRAAEVADVAGVPL
Sbjct  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGSSPGGLRAAEVADVAGVPL  300

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350


>gi|289445254|ref|ZP_06434998.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289418212|gb|EFD15413.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=350

 Score =  655 bits (1689),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LASMRAQPRLAEQ EHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct  301  LASMRAQPRLAEQPEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350


>gi|289755785|ref|ZP_06515163.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289696372|gb|EFD63801.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=350

 Score =  654 bits (1687),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCG LALPRR
Sbjct  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGWLALPRR  60

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350


>gi|31794830|ref|NP_857323.1| hypothetical protein Mb3684c [Mycobacterium bovis AF2122/97]
 gi|121639573|ref|YP_979797.1| hypothetical protein BCG_3718c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224992070|ref|YP_002646759.1| hypothetical protein JTY_3719 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|31620427|emb|CAD95870.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121495221|emb|CAL73707.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224775185|dbj|BAH27991.1| hypothetical protein JTY_3719 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341603594|emb|CCC66275.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=350

 Score =  654 bits (1687),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            MLTDPGLRDELDRVAAAVGVRVVHLGGRH VSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHLVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350


>gi|289572306|ref|ZP_06452533.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|339633651|ref|YP_004725293.1| hypothetical protein MAF_36670 [Mycobacterium africanum GM041182]
 gi|289536737|gb|EFD41315.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|339333007|emb|CCC28736.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=350

 Score =  651 bits (1680),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 348/350 (99%), Positives = 348/350 (99%), Gaps = 0/350 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            MLTDPGLRDELDRVAAAVGVRVVHLGGRH VSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHLVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            WSAVRAALPRPRGISVLSGTRRGYELDAGPV AVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVGAVIDAGRRGGVTVVCDLPRRLTDATQAA  240

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350


>gi|254233156|ref|ZP_04926482.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|124602949|gb|EAY61224.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=349

 Score =  550 bits (1416),  Expect = 2e-154, Method: Compositional matrix adjust.
 Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 1/350 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAA VVLDHAAADRCGRLALPRR
Sbjct  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAA-VVLDHAAADRCGRLALPRR  59

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct  60   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  119

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct  120  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  179

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct  180  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  239

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct  240  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  299

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct  300  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  349


>gi|240173380|ref|ZP_04752038.1| hypothetical protein MkanA1_28966 [Mycobacterium kansasii ATCC 
12478]
Length=347

 Score =  497 bits (1280),  Expect = 1e-138, Method: Compositional matrix adjust.
 Identities = 280/350 (80%), Positives = 304/350 (87%), Gaps = 3/350 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            M+T   LRDELDR+AAAVGVRVVH G    V+RKTWSAAAAVVLD AAA+RCGR+ALPRR
Sbjct  1    MMTAGELRDELDRIAAAVGVRVVHSGS---VTRKTWSAAAAVVLDQAAAERCGRIALPRR  57

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
             HVSVLTG+E  TATW  AI VGA+ VLRMP+QE EL+RELA+AA SARD+GI G VVAV
Sbjct  58   AHVSVLTGSEPVTATWTVAIAVGAERVLRMPDQENELIRELADAAASARDEGIRGKVVAV  117

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGG GGAGASLFAVALA +AA ALLVDLDPW GGIDLLVGGE+APG+RWPDLALQGGRL+
Sbjct  118  IGGCGGAGASLFAVALAHSAAQALLVDLDPWGGGIDLLVGGESAPGVRWPDLALQGGRLH  177

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            WSAV  ALPR RGIS+LSGTRRG ELDA PV+AV+DAGRRGGVTVVCDLPRR+TDA+ AA
Sbjct  178  WSAVSEALPRHRGISMLSGTRRGCELDAAPVEAVVDAGRRGGVTVVCDLPRRVTDASHAA  237

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            LD ADLVVLV P DVRACAA A + PVLTAINPNLGLVVRGPSPGGLRAAEVAD+AGVPL
Sbjct  238  LDCADLVVLVCPSDVRACAATAAIVPVLTAINPNLGLVVRGPSPGGLRAAEVADIAGVPL  297

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LASMRAQPRLA QLEHGGLRLRRRS LA+AARRVL  L     G +GRAA
Sbjct  298  LASMRAQPRLAGQLEHGGLRLRRRSTLAAAARRVLAALGHPQGGLNGRAA  347


>gi|15843273|ref|NP_338310.1| hypothetical protein MT3760 [Mycobacterium tuberculosis CDC1551]
 gi|13883631|gb|AAK48124.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
Length=261

 Score =  489 bits (1258),  Expect = 4e-136, Method: Compositional matrix adjust.
 Identities = 261/261 (100%), Positives = 261/261 (100%), Gaps = 0/261 (0%)

Query  90   MPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAADALLVDLD  149
            MPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAADALLVDLD
Sbjct  1    MPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAADALLVDLD  60

Query  150  PWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGTRRGYELDAG  209
            PWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGTRRGYELDAG
Sbjct  61   PWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGTRRGYELDAG  120

Query  210  PVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLT  269
            PVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLT
Sbjct  121  PVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLT  180

Query  270  AINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLAS  329
            AINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLAS
Sbjct  181  AINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLAS  240

Query  330  AARRVLGVLPRAGSGRHGRAA  350
            AARRVLGVLPRAGSGRHGRAA
Sbjct  241  AARRVLGVLPRAGSGRHGRAA  261


>gi|183985117|ref|YP_001853408.1| hypothetical protein MMAR_5148 [Mycobacterium marinum M]
 gi|183178443|gb|ACC43553.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=369

 Score =  447 bits (1150),  Expect = 1e-123, Method: Compositional matrix adjust.
 Identities = 268/353 (76%), Positives = 293/353 (84%), Gaps = 3/353 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            ML DP LRDELDRVAAAVGVR+VH  GR PV+RK WSAA AVVLD AAA    + ALPRR
Sbjct  17   MLVDPKLRDELDRVAAAVGVRIVHGDGRKPVTRKAWSAAGAVVLDPAAARGLSQAALPRR  76

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGI---CGAV  117
             HV +LTG EA T TWA A+ +GA  VL+MPEQEGEL+RELAEA E+ARD+G+    G V
Sbjct  77   AHVCLLTGAEAGTDTWATAVAIGAGAVLQMPEQEGELIRELAEAVEAARDEGLGGEVGQV  136

Query  118  VAVIGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGG  177
            +AVIGG GGAG SLFA ALAQ+AADALLVDLDPW GGIDLL+G E  PGLRWPDL+LQGG
Sbjct  137  IAVIGGSGGAGVSLFAAALAQSAADALLVDLDPWGGGIDLLMGCENLPGLRWPDLSLQGG  196

Query  178  RLNWSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDAT  237
            RL WSAVR  LPR RGIS+LSGTRRG ELD G V A+IDAGRRG VTVVCDLPRRLTDA 
Sbjct  197  RLAWSAVRDGLPRHRGISLLSGTRRGQELDCGAVGALIDAGRRGAVTVVCDLPRRLTDAV  256

Query  238  QAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAG  297
            Q ALD ADLVVLV PCDVR+CAA AT+ PVL AINP+LGLVVRGPSPGGLRAAEVAD+AG
Sbjct  257  QVALDRADLVVLVCPCDVRSCAATATIVPVLAAINPHLGLVVRGPSPGGLRAAEVADIAG  316

Query  298  VPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            VPLLASMR QPRL EQLEHGGLRLRRRS LA+AARRVL +LP + +   GRAA
Sbjct  317  VPLLASMRVQPRLVEQLEHGGLRLRRRSPLAAAARRVLALLPNSTAVPGGRAA  369


>gi|289441090|ref|ZP_06430834.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289414009|gb|EFD11249.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=347

 Score =  435 bits (1119),  Expect = 4e-120, Method: Compositional matrix adjust.
 Identities = 229/229 (100%), Positives = 229/229 (100%), Gaps = 0/229 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDL  229
            WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDL
Sbjct  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDL  229


>gi|118619401|ref|YP_907733.1| hypothetical protein MUL_4233 [Mycobacterium ulcerans Agy99]
 gi|118571511|gb|ABL06262.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=331

 Score =  416 bits (1069),  Expect = 3e-114, Method: Compositional matrix adjust.
 Identities = 238/315 (76%), Positives = 260/315 (83%), Gaps = 3/315 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            ML DP LRDELDRVAAAVGVR+VH  GR PV+RK WSAA AVVLD AAA    + ALPRR
Sbjct  17   MLVDPKLRDELDRVAAAVGVRIVHGDGRKPVTRKAWSAAGAVVLDPAAARGLTQAALPRR  76

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGI---CGAV  117
             HV +LTG EA T TW  A+ +GA  VL+MPEQEGEL+RELAEA E+ARD+G+    G V
Sbjct  77   AHVCLLTGAEAGTDTWVTAVAIGAGAVLQMPEQEGELIRELAEAVEAARDEGLGGEVGQV  136

Query  118  VAVIGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGG  177
            ++VIGG GGAG SLFA ALAQ+AADALLVDLDPW GGIDLL+G E  PGLRWP L+LQGG
Sbjct  137  ISVIGGSGGAGVSLFAAALAQSAADALLVDLDPWGGGIDLLMGCENLPGLRWPGLSLQGG  196

Query  178  RLNWSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDAT  237
            RL WSAVR  LPR RGIS+LSGTRRG ELD G V A+IDAGRRG VTVVCDLPRRLTDA 
Sbjct  197  RLAWSAVRDGLPRHRGISLLSGTRRGQELDCGAVGALIDAGRRGAVTVVCDLPRRLTDAV  256

Query  238  QAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAG  297
            Q ALD ADLVVLV PCDVR+CAA AT+ PVL AINP+LGLVVRGPSPGGLRAAEVAD+AG
Sbjct  257  QVALDRADLVVLVCPCDVRSCAATATIVPVLAAINPHLGLVVRGPSPGGLRAAEVADIAG  316

Query  298  VPLLASMRAQPRLAE  312
            VPLLASMR QPRL E
Sbjct  317  VPLLASMRVQPRLVE  331


>gi|118466891|ref|YP_879752.1| hypothetical protein MAV_0470 [Mycobacterium avium 104]
 gi|118168178|gb|ABK69075.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=350

 Score =  378 bits (971),  Expect = 6e-103, Method: Compositional matrix adjust.
 Identities = 261/350 (75%), Positives = 293/350 (84%), Gaps = 0/350 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            ML +P LR ELDRVAAA GVRVVH G    VSRKTW+AAAAVVLD AAA RCGR ALPRR
Sbjct  1    MLAEPELRAELDRVAAAAGVRVVHAGDAAAVSRKTWAAAAAVVLDAAAAARCGRWALPRR  60

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
             HV+VLT  E AT TWAAA+ +GA  VLR+PE E +LV ELAEAAES+RDDG  G  VAV
Sbjct  61   DHVTVLTAAEPATTTWAAAVRIGAARVLRLPEHEADLVGELAEAAESSRDDGQRGHAVAV  120

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGG GGAGASL AVALAQAA DALLVDLDPW GGI+LL+GGE  PGLRWPDLALQGGRLN
Sbjct  121  IGGCGGAGASLLAVALAQAAGDALLVDLDPWGGGIELLLGGENTPGLRWPDLALQGGRLN  180

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            W+AVR ALPR RG+SVLSGTRRG+E+DAGPV AV+DAGRRG V+V+CDLPRR TDA QAA
Sbjct  181  WAAVRDALPRHRGVSVLSGTRRGHEVDAGPVHAVVDAGRRGAVSVICDLPRRFTDAAQAA  240

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            L AADLVV+VS CDVRACAA   +APVL A+NPN+GLVVRGPSPGGLRAAE+A + G+PL
Sbjct  241  LGAADLVVVVSRCDVRACAATGALAPVLAAVNPNVGLVVRGPSPGGLRAAEIAGITGLPL  300

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LA+++AQP+L  Q+E  GLRL RRS LA AAR+VLGVLP AG+ R G+AA
Sbjct  301  LAAIKAQPQLGAQVERVGLRLGRRSALAVAARQVLGVLPPAGARRKGKAA  350


>gi|333992582|ref|YP_004525196.1| hypothetical protein JDM601_3942 [Mycobacterium sp. JDM601]
 gi|333488550|gb|AEF37942.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=358

 Score =  374 bits (960),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 222/342 (65%), Positives = 259/342 (76%), Gaps = 3/342 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            ++  P +RDEL RVAAAVGVRV+ L      SRK W+AAAA+V+D AAA RC    LPRR
Sbjct  10   LVAQPAMRDELARVAAAVGVRVIQLDATSVPSRKAWTAAAAIVVDEAAAARCSAARLPRR  69

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
             HV V+TG +   A+W  A+ VGAQ VL +P    ELV ELAEAA + RD G  G V+AV
Sbjct  70   AHVIVVTGAQPGPASWQGAVAVGAQRVLTLPIDGDELVAELAEAAAAVRDGGRRGEVIAV  129

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IG RGGAGASL A ALAQ A +ALLVDLDPW GGIDLL G E A GLRW DL  Q GRL 
Sbjct  130  IGARGGAGASLLATALAQRAGEALLVDLDPWGGGIDLLAGTENATGLRWCDLTAQTGRLT  189

Query  181  WSAVRAALPRPRGISVLSGTRRGYE---LDAGPVDAVIDAGRRGGVTVVCDLPRRLTDAT  237
            W A+R ALPR RG+SVLSG RRG +   ++AG VDAV++AGRRGG+TVVCDLPR LTD  
Sbjct  190  WPALRDALPRQRGVSVLSGARRGQQPGDVEAGTVDAVVEAGRRGGITVVCDLPRALTDPV  249

Query  238  QAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAG  297
            +  L AADLVV+VSPCDVR+CAA A +AP L A NPN+GLVVRGP+PGGLRA EVA++ G
Sbjct  250  ETVLAAADLVVVVSPCDVRSCAAGAAIAPRLRAANPNVGLVVRGPAPGGLRAVEVAEITG  309

Query  298  VPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLP  339
            +PLLA++RA+PRLAE+LEH  LRL RRS LA+AA RVL VLP
Sbjct  310  LPLLATLRAEPRLAERLEHAALRLHRRSALAAAAGRVLDVLP  351


>gi|342862005|ref|ZP_08718649.1| hypothetical protein MCOL_24060 [Mycobacterium colombiense CECT 
3035]
 gi|342130545|gb|EGT83854.1| hypothetical protein MCOL_24060 [Mycobacterium colombiense CECT 
3035]
Length=357

 Score =  370 bits (950),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 267/354 (76%), Positives = 298/354 (85%), Gaps = 4/354 (1%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            ML +P LR ELDRVAAA GVRVVH G   PVSRKTW+AAAAVVLD  AA RCGR  LPRR
Sbjct  4    MLAEPDLRAELDRVAAAAGVRVVHAGDGSPVSRKTWAAAAAVVLDARAAARCGRRVLPRR  63

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
             HV+VLT  E  TATWAAA+ VGA HVLR+P QE +LVR LAEAAES+RDDG  G  VAV
Sbjct  64   DHVTVLTAAEPETATWAAAVGVGAAHVLRLPGQEADLVRALAEAAESSRDDGARGHAVAV  123

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGG GGAGASL AVALAQAA DALLVDLDPW GG+DLL+GGE+APGLRWPDLALQGGRLN
Sbjct  124  IGGCGGAGASLLAVALAQAATDALLVDLDPWGGGLDLLLGGESAPGLRWPDLALQGGRLN  183

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            W AVR ALPR RG+SVLSGTRRGYELDAGPV AV+DAGRRG  +V+CDLPRRLTDA QAA
Sbjct  184  WPAVRDALPRHRGVSVLSGTRRGYELDAGPVHAVVDAGRRGAASVICDLPRRLTDAAQAA  243

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            L AADLVV+VS CDVRACAA   +AP L +INPN+GLVVRGPSP GLR AE+A++AG+PL
Sbjct  244  LSAADLVVVVSRCDVRACAATGALAPDLASINPNVGLVVRGPSPAGLRPAEIAEIAGLPL  303

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGS----GRHGRAA  350
            LAS++AQP+LAEQ++ GGLRL RRS LA+ AR+VLGVLP AGS    GR+G+AA
Sbjct  304  LASIKAQPQLAEQVDRGGLRLGRRSALATGARQVLGVLPSAGSRRRAGRNGKAA  357


>gi|336460809|gb|EGO39694.1| helicase/secretion neighborhood CpaE-like protein [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=371

 Score =  365 bits (937),  Expect = 6e-99, Method: Compositional matrix adjust.
 Identities = 261/350 (75%), Positives = 294/350 (84%), Gaps = 0/350 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            ML +P LR ELDRVAAA GVRVVH G    VSRKTW+AAAAVVLD AAA RCGR ALPRR
Sbjct  22   MLAEPELRAELDRVAAAAGVRVVHAGDAAAVSRKTWAAAAAVVLDAAAAARCGRWALPRR  81

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
             HV+VLT  E AT TWAAA+ +GA  VLR+PE E +LV ELAEAAES+RDDG  G  VAV
Sbjct  82   DHVTVLTAAEPATTTWAAAVRIGAARVLRLPEHEADLVGELAEAAESSRDDGQRGHAVAV  141

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            +GG GGAGASL AVALAQAA DALLVDLDPW GGI+LL+GGE  PGLRWPDLALQGGRLN
Sbjct  142  VGGCGGAGASLLAVALAQAAGDALLVDLDPWGGGIELLLGGENTPGLRWPDLALQGGRLN  201

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            W+AVR ALPR RG+SVLSGTRRG+E+DAGPV AV+DAGRRG V+V+CDLPRR TDA QAA
Sbjct  202  WAAVRDALPRHRGVSVLSGTRRGHEVDAGPVHAVVDAGRRGAVSVICDLPRRFTDAAQAA  261

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            L AADLVV+VS CDVRACAA   +APVL A+NPN+GLVVRGPSPGGLRAAE+A + G+PL
Sbjct  262  LGAADLVVVVSRCDVRACAATGALAPVLAAVNPNVGLVVRGPSPGGLRAAEIAGITGLPL  321

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LA+++AQP+L  Q+E GGLRL RRS LA AAR+VLGVLP AG+ R G+AA
Sbjct  322  LAAIKAQPQLGAQVERGGLRLGRRSALAVAARQVLGVLPPAGARRKGKAA  371


>gi|41406513|ref|NP_959349.1| hypothetical protein MAP0415 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41394862|gb|AAS02732.1| hypothetical protein MAP_0415 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=351

 Score =  354 bits (908),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 254/351 (73%), Positives = 288/351 (83%), Gaps = 1/351 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            ML +P LR ELDRVAAA GVRVVH G    VSRKTW+AAAAVVLD AAA RCGR ALPRR
Sbjct  1    MLAEPELRAELDRVAAAAGVRVVHAGDAAAVSRKTWAAAAAVVLDAAAAARCGRWALPRR  60

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
             HV+VLT  E AT TWAAA+ +GA  VLR+PE E +LV ELAEAAES+RDDG  G  VAV
Sbjct  61   DHVTVLTAAEPATTTWAAAVRIGAARVLRLPEHEADLVGELAEAAESSRDDGQRGHAVAV  120

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            +GG GGAGASL AVALAQAA DALLVDLDPW GGI+LL+GGE  PGLRWPDLALQGGRLN
Sbjct  121  VGGCGGAGASLLAVALAQAAGDALLVDLDPWGGGIELLLGGENTPGLRWPDLALQGGRLN  180

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLT-DATQA  239
            W+AVR ALPR RG+SVLSGTRRG+E+DAGPV AV+DAGRRG V+V+CDLPRR T  A  A
Sbjct  181  WAAVRDALPRHRGVSVLSGTRRGHEVDAGPVHAVVDAGRRGAVSVICDLPRRFTDAAQAA  240

Query  240  ALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVP  299
               A  +VV+VS CDVRACAA   +APVL A+NPN+GLVVRGPSPGGLRAAE+A + G+P
Sbjct  241  LGAADLVVVVVSRCDVRACAATGALAPVLAAVNPNVGLVVRGPSPGGLRAAEIAGITGLP  300

Query  300  LLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LLA+++AQP+L  Q+E GGLRL RRS LA AAR+VLGVLP AG+ R G+AA
Sbjct  301  LLAAIKAQPQLGAQVERGGLRLGRRSALAVAARQVLGVLPPAGARRKGKAA  351


>gi|296166715|ref|ZP_06849139.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897885|gb|EFG77467.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=449

 Score =  332 bits (852),  Expect = 5e-89, Method: Compositional matrix adjust.
 Identities = 266/350 (76%), Positives = 294/350 (84%), Gaps = 3/350 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            +L DP LR ELDRVAAAVGVRVVH GG    SRKTWSAAAAVVLD A+ADRC R  LPRR
Sbjct  103  VLADPELRRELDRVAAAVGVRVVHAGGAP--SRKTWSAAAAVVLDEASADRCARGGLPRR  160

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            THVSVLT T+ ATATWAAA+ VGA HVLR+PE+E +LVR LAEAAES+R DG  G VVAV
Sbjct  161  THVSVLTPTDPATATWAAAVAVGAAHVLRLPERERDLVRALAEAAESSRGDGARGDVVAV  220

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            IGG GGAGAS  AVALAQAA DALLVDLDPW GG+DLL+G E APGLRWPDLALQGGRL+
Sbjct  221  IGGCGGAGASALAVALAQAADDALLVDLDPWGGGLDLLLGAEDAPGLRWPDLALQGGRLD  280

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            W AVRAALPR RG+S LSGTRRGYE  AGPV A++DAGRRG VTVVCDLPRRLT A QAA
Sbjct  281  WPAVRAALPRHRGVSALSGTRRGYEPAAGPVHAIVDAGRRGAVTVVCDLPRRLTGAAQAA  340

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            LDAADLVV+VS CDV ACAA   +APVL  +NPN+GLVVRGPSPGGLRAAE+AD+ G+PL
Sbjct  341  LDAADLVVVVSRCDVPACAATGALAPVLAGVNPNVGLVVRGPSPGGLRAAEIADITGLPL  400

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA  350
            LASM+A+PR+AEQLE GGLR  RRS LA+AAR+VL V+ R G  R+G AA
Sbjct  401  LASMKAEPRVAEQLERGGLRPGRRSALAAAARQVLAVMAR-GPARNGGAA  449


>gi|120406369|ref|YP_956198.1| hypothetical protein Mvan_5422 [Mycobacterium vanbaalenii PYR-1]
 gi|119959187|gb|ABM16192.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=365

 Score =  320 bits (819),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 186/347 (54%), Positives = 242/347 (70%), Gaps = 8/347 (2%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            ++ D  L  ++DRV AA GVR+V      P S + W+ A+AV+LD AAA RC    LPRR
Sbjct  10   LVDDRALSADIDRVVAAAGVRIVR--ATDPSSHRVWTGASAVLLDTAAAQRCAARGLPRR  67

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
              V +++G       W AA+ VGAQ V+ +P  + EL+ ELA+A E+AR  G+ G VVAV
Sbjct  68   PRVLLISGDAPGPDEWEAAVAVGAQQVVTLPSGDHELMAELADATEAARHTGLRGPVVAV  127

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            + GRGG GAS+FA A+A+ A +ALL+D DPW GG+DL++G ET PGLRWPDL+L GGR+ 
Sbjct  128  LAGRGGGGASVFATAVAKVATEALLIDGDPWGGGLDLVLGSETEPGLRWPDLSLAGGRVG  187

Query  181  WSAVRAALPRPRGISVLSGTR------RGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLT  234
            +SA+R ALP   G+ VLSG+R         ++DA  + AVIDAG RGGVTVVCD+ RR T
Sbjct  188  FSALRDALPTRHGVYVLSGSRALSGTHSSNDIDAAALGAVIDAGSRGGVTVVCDVARRPT  247

Query  235  DATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVAD  294
             A++ A+ +ADLVVLV+P DVR+CAAAA  A  +   NPN G+VVRGPSPGGLR+ +VA 
Sbjct  248  PASETAVASADLVVLVTPADVRSCAAAAATAQWVAGGNPNAGVVVRGPSPGGLRSVDVAR  307

Query  295  VAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRA  341
            + G+P+LASMR QP +   LE GGLR+R  S LA AAR VL VL ++
Sbjct  308  IVGLPVLASMRPQPGIDTLLERGGLRVRPHSPLARAAREVLAVLSQS  354


>gi|315446286|ref|YP_004079165.1| ATPase involved in chromosome partitioning [Mycobacterium sp. 
Spyr1]
 gi|315264589|gb|ADU01331.1| ATPase involved in chromosome partitioning [Mycobacterium sp. 
Spyr1]
Length=365

 Score =  298 bits (764),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 181/344 (53%), Positives = 245/344 (72%), Gaps = 8/344 (2%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            ++ DP L   ++RVAAA G+R+V      P SR+ W+ AAAV++D AAA RC    LPRR
Sbjct  10   LVEDPTLNSHVERVAAAAGLRMVRTD--DPSSRRVWTGAAAVLVDGAAARRCAARGLPRR  67

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            + V +++        W AA+ VGAQ ++ +P ++ +L+  L++AAE+ARD    G +VAV
Sbjct  68   SRVLLISAEAPGADDWEAAVAVGAQQIVTLPAEDRDLMAALSDAAEAARDPRRRGPIVAV  127

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            + GRGG GAS+FA A+AQ+A ++LL+D DPW GG+DL++G ET PGLRWPDL+L GGR+ 
Sbjct  128  LAGRGGGGASVFATAVAQSATESLLIDGDPWGGGLDLVLGSETEPGLRWPDLSLAGGRVG  187

Query  181  WSAVRAALPRPRGISVLSGT------RRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLT  234
            ++A+R ALPR  G++VLSG+      R   ++D  P+ AVIDAG RGGVTVVCD+ RR  
Sbjct  188  YAALRDALPRRHGVAVLSGSRVLSGDRSSNDIDPAPLGAVIDAGSRGGVTVVCDVARRPG  247

Query  235  DATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVAD  294
             A + A+ AADLVVLV+P D+R+CAA+A  A  +TA NPN G+VVRGP+PGGLR A+VA 
Sbjct  248  AAAETAVAAADLVVLVTPADLRSCAASAATAQWVTAANPNTGVVVRGPAPGGLRPADVAR  307

Query  295  VAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVL  338
            + G+P+L +MR QP +   LE GGLR+R RS LA AAR VL VL
Sbjct  308  IVGLPVLTAMRPQPGIESALERGGLRVRSRSPLARAAREVLSVL  351


>gi|145221975|ref|YP_001132653.1| hypothetical protein Mflv_1383 [Mycobacterium gilvum PYR-GCK]
 gi|145214461|gb|ABP43865.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=365

 Score =  298 bits (762),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 181/344 (53%), Positives = 245/344 (72%), Gaps = 8/344 (2%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            ++ DP L   ++RVAAA G+R+V      P SR+ W+ AAAV++D AAA RC    LPRR
Sbjct  10   LVEDPTLNSHVERVAAAAGLRMVRTD--DPSSRRVWTGAAAVLVDGAAARRCAARGLPRR  67

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            + V +++        W AA+ VGAQ ++ +P ++ +L+  L++AAE+ARD    G +VAV
Sbjct  68   SRVLLISADAPGADDWEAAVAVGAQQIVTLPAEDRDLMAALSDAAEAARDPRRRGPIVAV  127

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            + GRGG GAS+FA A+AQ+A ++LL+D DPW GG+DL++G ET PGLRWPDL+L GGR+ 
Sbjct  128  LAGRGGGGASVFATAVAQSAPESLLIDGDPWGGGLDLVLGSETEPGLRWPDLSLAGGRVG  187

Query  181  WSAVRAALPRPRGISVLSGT------RRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLT  234
            ++A+R ALPR  G++VLSG+      R   ++D  P+ AVIDAG RGGVTVVCD+ RR  
Sbjct  188  YAALRDALPRRHGVAVLSGSRVLSGDRSSNDIDPAPLGAVIDAGSRGGVTVVCDVARRPG  247

Query  235  DATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVAD  294
             A + A+ AADLVVLV+P D+R+CAA+A  A  +TA NPN G+VVRGP+PGGLR A+VA 
Sbjct  248  AAAETAVAAADLVVLVTPADLRSCAASAATAQWVTAANPNTGVVVRGPAPGGLRPADVAR  307

Query  295  VAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVL  338
            + G+P+L +MR QP +   LE GGLR+R RS LA AAR VL VL
Sbjct  308  IVGLPVLTAMRPQPGIESALERGGLRVRARSPLARAAREVLSVL  351


>gi|254822026|ref|ZP_05227027.1| hypothetical protein MintA_18982 [Mycobacterium intracellulare 
ATCC 13950]
Length=207

 Score =  285 bits (730),  Expect = 6e-75, Method: Compositional matrix adjust.
 Identities = 154/196 (79%), Positives = 173/196 (89%), Gaps = 0/196 (0%)

Query  144  LLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGTRRG  203
            +LVDLDPW GGI+LL+GGE APGLRWPDLALQ GRL WSAVR ALPR RGISVLSGTRRG
Sbjct  1    MLVDLDPWGGGIELLLGGENAPGLRWPDLALQAGRLTWSAVRDALPRHRGISVLSGTRRG  60

Query  204  YELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAAT  263
            YE+DAGPV A+++AGRRG VTV+CDLPRR TDATQAAL AADLVV+VS CDVRACAA   
Sbjct  61   YEVDAGPVHAIVEAGRRGAVTVICDLPRRFTDATQAALSAADLVVVVSRCDVRACAATTA  120

Query  264  MAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRR  323
            MAPVL A NPN+GLVVRGPSPGGLRA E+A++AG+PLLA+++AQP+L EQ+E GGLR RR
Sbjct  121  MAPVLAATNPNVGLVVRGPSPGGLRAVEIAEIAGLPLLAAIKAQPQLGEQVERGGLRYRR  180

Query  324  RSVLASAARRVLGVLP  339
            RS LA AAR VLGVLP
Sbjct  181  RSALAVAAREVLGVLP  196


>gi|118472134|ref|YP_890391.1| hypothetical protein MSMEG_6171 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118173421|gb|ABK74317.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=316

 Score =  284 bits (727),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 189/309 (62%), Positives = 223/309 (73%), Gaps = 3/309 (0%)

Query  30   PVSRKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHVLR  89
            P SRK W +AAAV+LD +AA RC    LPRR  V V+   E   A W AAI VGAQHV+ 
Sbjct  2    PSSRKAWLSAAAVLLDASAARRCADRGLPRRDRVLVIGCDEPGPADWQAAIAVGAQHVVT  61

Query  90   MPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAADALLVDLD  149
            +P Q+ +LV  L+   E     G  G VVAV+  +GGAGAS+FA ALA +A  ALLVD D
Sbjct  62   LPRQDTDLVAALSVVDEGG---GHRGPVVAVVAAKGGAGASVFAAALALSAPGALLVDAD  118

Query  150  PWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGTRRGYELDAG  209
            PW+GGIDL++G E  PGLRW DLALQGGRL + A+R ALPR   ISVLSG R G ++ A 
Sbjct  119  PWSGGIDLVLGSEDQPGLRWADLALQGGRLGYGALRDALPRRGEISVLSGGRAGVDITAA  178

Query  210  PVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLT  269
             + AVIDAG RG   VVCD+PRR TDA +AAL+AADLVV+V+  DVR+CAAAA     + 
Sbjct  179  ALHAVIDAGCRGATLVVCDVPRRSTDAAEAALEAADLVVVVARADVRSCAAAAAAGSWIA  238

Query  270  AINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLAS  329
              NPN+G+VVRGP+PGGLRAAEVAD+  +PLLASMR QP L E LE GGLRL RRS LA+
Sbjct  239  TCNPNIGVVVRGPAPGGLRAAEVADIVDLPLLASMRPQPGLDEALERGGLRLTRRSPLAT  298

Query  330  AARRVLGVL  338
            AARRVLGVL
Sbjct  299  AARRVLGVL  307


>gi|108801769|ref|YP_641966.1| hypothetical protein Mmcs_4806 [Mycobacterium sp. MCS]
 gi|119870920|ref|YP_940872.1| hypothetical protein Mkms_4892 [Mycobacterium sp. KMS]
 gi|108772188|gb|ABG10910.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119697009|gb|ABL94082.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=353

 Score =  280 bits (715),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 204/340 (60%), Positives = 250/340 (74%), Gaps = 2/340 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            +L+ P LRD++DRVAAA  V VVH     P SRK W+AAAA++LD  AA RC   ALPRR
Sbjct  9    LLSGPTLRDDVDRVAAAAAVVVVHA--AEPSSRKAWTAAAAILLDGQAARRCAAQALPRR  66

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
              V ++         W AAI VGAQ VL +PEQEG+LV  LA+AAES RDD   G V AV
Sbjct  67   DRVVLIGQAPLGEEQWHAAIAVGAQRVLTLPEQEGDLVVLLADAAESVRDDVRRGPVAAV  126

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            + GRGGAGAS+ A ALA +  DALLVD+DPW+GG+DLL+G ET  GLRWPDLAL+ GR+ 
Sbjct  127  VAGRGGAGASVLAAALALSVTDALLVDVDPWSGGLDLLLGVETTAGLRWPDLALRAGRVG  186

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            + A+R ALPR  G+++L+  R G E+D   + AV++AG RGG TV+CD+PRR T A + A
Sbjct  187  YPALRDALPRHGGVTLLANGRGGGEIDPTALAAVVEAGSRGGATVICDVPRRSTAAAENA  246

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            LDAADLV++V   +VRACAAA  M P L+AINPN+GLVVRGP+PGGLRAAEVA   G+PL
Sbjct  247  LDAADLVIMVVTAEVRACAAAGAMVPWLSAINPNVGLVVRGPAPGGLRAAEVAASVGLPL  306

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPR  340
            LA+MR QP +A  LE GGLR+ RR+ LA+AARRVL VL R
Sbjct  307  LAAMRPQPGVAAALERGGLRIARRAPLAAAARRVLDVLQR  346


>gi|126437757|ref|YP_001073448.1| hypothetical protein Mjls_5193 [Mycobacterium sp. JLS]
 gi|126237557|gb|ABO00958.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=353

 Score =  279 bits (714),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 204/340 (60%), Positives = 250/340 (74%), Gaps = 2/340 (0%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            +L+ P LRD++DRVAAA  V VVH     P SRK W+AAAA++LD  AA RC   ALPRR
Sbjct  9    LLSGPTLRDDVDRVAAAAAVVVVHA--AEPSSRKAWTAAAAILLDDQAARRCAAQALPRR  66

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
              V ++         W AAI VGAQ V+ +PEQE +LV  LA+AAES RDD   G V AV
Sbjct  67   DRVVLVGQAPLGEEQWHAAIAVGAQRVMALPEQESDLVVLLADAAESVRDDVRRGPVAAV  126

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
            + GRGGAGAS+ A ALA +  DALLVD+DPW+GG+DLL+G ET  GLRWPDLAL+ GR+ 
Sbjct  127  VAGRGGAGASVLAAALALSVTDALLVDVDPWSGGLDLLLGVETTAGLRWPDLALRAGRVG  186

Query  181  WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA  240
            + A+R ALPR  G+++L+  R G E+D   + AV++AG RGG TVVCD+PRR T A + A
Sbjct  187  YPALRDALPRRGGVTLLANGRGGGEIDPTALAAVVEAGSRGGTTVVCDVPRRSTAAAENA  246

Query  241  LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL  300
            LDAADLV++V   +VRACAAA  M P L+AINPN+GLVVRGP+PGGLRAAEVA   G+PL
Sbjct  247  LDAADLVIMVVTAEVRACAAAGAMVPWLSAINPNVGLVVRGPAPGGLRAAEVAASVGLPL  306

Query  301  LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPR  340
            LA+MR QP +AE LE GGLR+ RR+ LA+AARRVL VL R
Sbjct  307  LAAMRPQPGVAEALERGGLRVARRAPLAAAARRVLEVLQR  346


>gi|169627536|ref|YP_001701185.1| hypothetical protein MAB_0432 [Mycobacterium abscessus ATCC 19977]
 gi|169239503|emb|CAM60531.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=357

 Score =  247 bits (631),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 156/340 (46%), Positives = 214/340 (63%), Gaps = 1/340 (0%)

Query  4    DPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRRTHV  63
            D  L +E++R+ AA G  +V       +SR+ W+ A AVVLD A         LPRR+ V
Sbjct  15   DRQLSNEIERIVAAAGKPLVLATDAGSISRQAWTRAGAVVLDGADTSMAALAQLPRRSRV  74

Query  64   SVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAVIGG  123
             ++   E     W  A+ VGA+ VL +PE E  LV  L+ A  S    G    +V V G 
Sbjct  75   LLICRDEPTNEVWRRAVEVGAEQVLALPEDEATLVAALS-AMPSTASAGRAPVIVVVGGC  133

Query  124  RGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSA  183
             G   + L A    +A + A++VD DP+ GG+DLL+G E  PGLRWPD+ ++GGR+++ A
Sbjct  134  GGAGASVLCAAIGLRAPSGAMIVDADPYGGGMDLLLGWEDIPGLRWPDVDMRGGRVSFDA  193

Query  184  VRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDA  243
            +R ALP  RG+ VLSG R G   +   +  VID+ R  GV VV DLPRRL  +  AAL+ 
Sbjct  194  LRRALPHRRGLVVLSGDRTGGGGNVETIAGVIDSAREAGVAVVVDLPRRLGASGVAALER  253

Query  244  ADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLAS  303
            ADLVV+V+  +VRACAA+A +A  +   NPN+G+VVRGP+P GLRA EVA++ GVPL+A+
Sbjct  254  ADLVVVVTTAEVRACAASALVARAVRTTNPNVGVVVRGPAPSGLRAPEVAEIVGVPLIAA  313

Query  304  MRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGS  343
            MR +P LA +L+ GGLRL RRS LA+AA+ VL ++ + G 
Sbjct  314  MRPEPNLASRLDKGGLRLSRRSPLAAAAQSVLSLVSQDGK  353


>gi|157144133|dbj|BAF80050.1| smmB [Rhodococcus rhodochrous]
Length=356

 Score =  214 bits (545),  Expect = 2e-53, Method: Compositional matrix adjust.
 Identities = 158/342 (47%), Positives = 201/342 (59%), Gaps = 13/342 (3%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            ++ DP L  +L RV AA   R +H     PV R+ W+ A  VVLD AAA  C     PRR
Sbjct  7    LVDDPALIADLRRVVAAAD-RTLH-EMSVPVPRRAWTDAPIVVLDAAAAVSCAG-GYPRR  63

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
              V ++    A    W AA TVGA+HVL +P +E EL+  +A A E +   G+   V+A+
Sbjct  64   PGVILVCSGTADLTEWQAAATVGAEHVLALPSEEVELLSIIAAAGEPSSGAGV---VLAI  120

Query  121  IGGRGGAGASLFAVALAQAAA-----DALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQ  175
            +GG GGAGAS FA ALA AA      D LLVD DP+  G+D+L G E  PG+RW  L + 
Sbjct  121  VGGCGGAGASTFAAALAWAAGHDERRDTLLVDADPFGAGLDVLTGLEEHPGVRWSGLTVD  180

Query  176  GGRLNWSAVRAALPR-PRGISVLSGTRRGYE-LDAGPVDAVIDAGRRGGVTVVCDLPRRL  233
            GGR++  A+R A+P    G+ VLS  R   E L AG   +V++A R  G TVVCD+ R  
Sbjct  181  GGRISARALRDAVPVWSSGVGVLSTDRENNERLTAGATGSVVEAARGAGTTVVCDVGRSF  240

Query  234  TDATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVA  293
                 A +  ADL VLV P  + A  +AA +A  L A     G+VVRGP+PGGLRA +VA
Sbjct  241  DPVADAVITLADLTVLVVPARIGAVLSAARVARTLAARGEPAGVVVRGPAPGGLRAVDVA  300

Query  294  DVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVL  335
            D  G+ +L SMR +P L E+LE GGLRLR RS L  AA  VL
Sbjct  301  DAVGLDVLTSMRPEPGLTERLERGGLRLRPRSPLLGAAHDVL  342


>gi|343926483|ref|ZP_08765988.1| hypothetical protein GOALK_060_01470 [Gordonia alkanivorans NBRC 
16433]
 gi|343763721|dbj|GAA12914.1| hypothetical protein GOALK_060_01470 [Gordonia alkanivorans NBRC 
16433]
Length=372

 Score =  194 bits (494),  Expect = 2e-47, Method: Compositional matrix adjust.
 Identities = 156/353 (45%), Positives = 197/353 (56%), Gaps = 17/353 (4%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            +L DP L D++ R AAA G R V    R    R+ W  + AVV D AA      +  PRR
Sbjct  27   VLVDPDLYDDVARCAAAAGYRTV--AARPDDCRREWLTSRAVVADPAAIAVLTLIHPPRR  84

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
              + +++  E    TW  A+ +GA     +P  E  LVR L +     R       V+AV
Sbjct  85   DGLILVSAEEPRADTWRMAMDLGATDAAALPSDENRLVRSLTDVRVPRRRPA---GVLAV  141

Query  121  IGGRGGAGASLFAVALAQAA----ADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQG  176
            IG  GGAGAS  A A+A  +    +  LL+DLD  A G DLL+G E  PGLRW DL+L G
Sbjct  142  IGAHGGAGASTLAAAVALTSVGNGSSTLLLDLDDVAPGTDLLLGIEQRPGLRWQDLSLDG  201

Query  177  GRLNWSAVRAALPRP-RGISVLSGTR---RGYELDAGPVDAVIDAGRRGGVTVVCDLPRR  232
            G +  +A+  ALPR   G++VL+  R   R    DA  V AVIDAG+  G  VV DLPR 
Sbjct  202  GVVGGTALHHALPRAGSGLAVLTSERLPTRAPGSDA--VAAVIDAGQAHGDLVVVDLPRA  259

Query  233  LTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEV  292
             T   + A+ +ADLVVLVS   V  CAAA  +   L     ++ LVVRGPSPGGLR A+V
Sbjct  260  DTPVVRTAIASADLVVLVSAPSVGGCAAARRVVGRLIGDEVSVELVVRGPSPGGLRPAQV  319

Query  293  ADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGR  345
            AD  GVPL+A+ R  PRL  +LE G LR+R RS L  AA+ V   +  AG GR
Sbjct  320  ADAIGVPLIAAYRPDPRLPVRLEGGPLRVRPRSPLGRAAQAVHSRV--AGQGR  370


>gi|229494816|ref|ZP_04388572.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229318312|gb|EEN84177.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=364

 Score =  190 bits (482),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 147/340 (44%), Positives = 198/340 (59%), Gaps = 11/340 (3%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            ++ D  +   + RVAAAV  R+      HPVSR+ W+ A+AVVLD +AA R      P+R
Sbjct  17   LVDDAKILASVRRVAAAVDRRLDE--AEHPVSRQQWNRASAVVLDASAA-RDALARSPKR  73

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            T V ++         W +A  +GA  VL +PE+E  LV  LA+  + + D  +   V   
Sbjct  74   TRVFLVCDGTPTVDDWKSATAIGADSVLSLPEEENALVAVLADHVDVSGDGTVVSVVGGC  133

Query  121  IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN  180
             GG   A A+  A+  A      LLVD+D    G D+L+G ETAPGLRW  L ++GGRL+
Sbjct  134  GGGGASATAAAVALTSAARHVPTLLVDVDALGSGADVLLGIETAPGLRWGALTVEGGRLS  193

Query  181  WSAVRAALP-RPRGISVLSGTRRGYELDAGP----VDAVIDAGRRGGVTVVCDLPRRLTD  235
              A+R ALP + + + VL+ +RR  E+D GP    V AV+DAGR  G  VVCD+PR  ++
Sbjct  194  PDALRDALPAKGKFLRVLASSRR--EID-GPTVTAVRAVLDAGRSSGGLVVCDVPRHPSE  250

Query  236  ATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADV  295
              QA L+ +D V++V P  V AC AA  +   +   N N+GLVVRGP+PGGLR A+VAD+
Sbjct  251  VGQAVLEMSDSVLVVVPATVAACVAAEKVGAWVVRHNSNVGLVVRGPAPGGLRGADVADM  310

Query  296  AGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVL  335
             G+PL A MR    LA  LE GGL L R   L+ AA  VL
Sbjct  311  LGLPLTAVMRGHRSLAPMLERGGLELTRGCPLSVAATAVL  350


>gi|226303992|ref|YP_002763950.1| hypothetical protein RER_05030 [Rhodococcus erythropolis PR4]
 gi|226183107|dbj|BAH31211.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=364

 Score =  189 bits (479),  Expect = 9e-46, Method: Compositional matrix adjust.
 Identities = 139/313 (45%), Positives = 185/313 (60%), Gaps = 9/313 (2%)

Query  28   RHPVSRKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHV  87
             HPVSR+ W+ A+AVVLD +AA R      P+RT V ++         W +A  +GA  V
Sbjct  42   EHPVSRQQWNRASAVVLDASAA-RDALTRSPKRTRVFLVCDGTPTVDDWKSATAIGADSV  100

Query  88   LRMPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAADALLVD  147
            L +PE+E  LV  LA+  + + D  +   V    GG   A A+  A+  A      LLVD
Sbjct  101  LSLPEEENALVAVLADHVDVSGDGTVVSVVGGCGGGGASATAAAVALTSAARHVPTLLVD  160

Query  148  LDPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALP-RPRGISVLSGTRRGYEL  206
            +D    G D+L+G ET PGLRW  L ++GGRL   A+R ALP + + + VL+ +RR  E+
Sbjct  161  VDALGSGADVLLGIETTPGLRWGALTVEGGRLAPDALRDALPAKGKFLRVLASSRR--EI  218

Query  207  DAGP----VDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAA  262
            D GP    V AV+DAGR  G  VVCD+PR  ++  QAAL+ +DLV++V P  V AC AA 
Sbjct  219  D-GPTVTAVRAVLDAGRSSGGLVVCDVPRHPSEVGQAALEMSDLVLVVVPATVAACVAAE  277

Query  263  TMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLR  322
             +   +   N N+GLVVRGP+PGGLR A+VAD+ G+PL A MR    LA  LE GGL L 
Sbjct  278  KVGAWVVRHNSNVGLVVRGPAPGGLRGADVADMLGLPLTAVMRGHRSLAPMLERGGLELT  337

Query  323  RRSVLASAARRVL  335
            R   L++ A  VL
Sbjct  338  RGCPLSAVATAVL  350


>gi|296394992|ref|YP_003659876.1| hypothetical protein Srot_2610 [Segniliparus rotundus DSM 44985]
 gi|296182139|gb|ADG99045.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=380

 Score =  188 bits (477),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 144/345 (42%), Positives = 193/345 (56%), Gaps = 15/345 (4%)

Query  2    LTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRRT  61
            + DP L + +  V AA G  +V    +    R+ W +A  V+LD   A  C    L R  
Sbjct  32   IADPVLMEHVRHVVAASGRGLVESPPQR--DRRVWRSAGMVLLDEQTARACAGERLARDG  89

Query  62   HVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAVI  121
              +++    A+ A W  A+ V A HVL +PEQE +LVR + EA E  R  G  G ++AVI
Sbjct  90   ATALVCTGPASPAAWQLAVRVKADHVLALPEQERDLVRVVGEAVE--RRVG-AGRIIAVI  146

Query  122  GGRGGAGASLFAVALA----QAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGG  177
            G RGGAG S    A A    ++   +L VDLDP  GG+D+++G E  PGLRW DLAL GG
Sbjct  147  GARGGAGVSTLVAATALVAARSGLRSLAVDLDPLGGGLDVVLGMEREPGLRWGDLALVGG  206

Query  178  RLNWSAVRAALP-RPRGISVLSGTRRGYELDAGPVD-----AVIDAGRRGGVTVVCDLPR  231
            R++ +A+  ALP R   +SVL           G ++     AV+D+ R  G  VV DLPR
Sbjct  207  RVSAAALHEALPSRSGNLSVLGAGSADLSAPRGAIEPEAALAVLDSTRSAGDAVVVDLPR  266

Query  232  RLTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAE  291
               D  QA +  AD  +LV P ++RA AA  ++A  L     ++G VVRGPSPGGLR + 
Sbjct  267  HWGDLQQAVVATADSTILVLPAELRAIAAGRSLALALCRECASVGAVVRGPSPGGLRLSR  326

Query  292  VADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLG  336
             A+ AGVPL+A+M  +P +A  LE  GL LR RS +  AA  VLG
Sbjct  327  AAEHAGVPLIATMHDEPPIALSLERHGLVLRARSSVLRAAAAVLG  371


>gi|331694290|ref|YP_004330529.1| helicase/secretion neighborhood CpaE-like protein [Pseudonocardia 
dioxanivorans CB1190]
 gi|326948979|gb|AEA22676.1| helicase/secretion neighborhood CpaE-like protein [Pseudonocardia 
dioxanivorans CB1190]
Length=359

 Score =  184 bits (467),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 148/323 (46%), Positives = 190/323 (59%), Gaps = 11/323 (3%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            M+ DP L D + R+AAA G  V H       +R+ W+AA+ VV+D AAA+RC R   PRR
Sbjct  9    MVDDPDLLDAVLRLAAAAGAEV-HRAIDPTDARRQWAAASMVVVDVAAAERCARFPFPRR  67

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
              + ++T        W   +  GA +++ +PE E  +V    EA E     G  GAV+AV
Sbjct  68   DGIVLVTAGTPPPHAWQLGLRAGAANIVELPEGELWMVTAFTEACEGG---GPPGAVLAV  124

Query  121  IGGRGGAGASLFAVALAQAAAD----ALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQG  176
             GG GGAGAS  A A+A  AA      LL+D DP  GG+DLL+G E   G+RWP+L++  
Sbjct  125  TGGCGGAGASTLAAAVALRAARDGRRTLLLDCDPLGGGLDLLLGAEDVLGVRWPELSVMD  184

Query  177  GRLNWSAVRAALPR--PRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLT  234
            GR+  +A+  ALP    R +SVLS  R G    A  + AVIDAGRR G TVVCD+PR+ T
Sbjct  185  GRVPAAALHEALPAMGDRTLSVLSCDRTGPGPGAAGLRAVIDAGRRAGDTVVCDVPRQPT  244

Query  235  DATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVAD  294
            +A   AL  ADL VLV P DVRACAAA+ +  VL      +GLVVRGPS  G+   +VA 
Sbjct  245  EAGATALARADLTVLVVPADVRACAAASRVTAVLAEHACAVGLVVRGPS-QGITPDDVAR  303

Query  295  VAGVPLLASMRAQPRLAEQLEHG  317
               VPLL +MR Q  L  +LE G
Sbjct  304  TLDVPLLVAMRTQNDLDRRLERG  326


>gi|296141577|ref|YP_003648820.1| hypothetical protein Tpau_3909 [Tsukamurella paurometabola DSM 
20162]
 gi|296029711|gb|ADG80481.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 
20162]
Length=355

 Score =  182 bits (461),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 157/316 (50%), Positives = 191/316 (61%), Gaps = 20/316 (6%)

Query  33   RKTWSAAAAVVLD------HAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQH  86
            R  W++A+ +VLD       A A R G   LPRR  V+ L  T A     +AA+ VGA  
Sbjct  39   RAAWASASGLVLDLESARVMADAARAG--GLPRREGVA-LVATRAGLPELSAAVDVGASQ  95

Query  87   VLRMPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAA----D  142
            V  +PEQ  EL R LA       DDG    VVAV+GG GGAGAS+ A A+A AA      
Sbjct  96   VFELPEQVRELARFLAAREP---DDGARSRVVAVLGGHGGAGASVLAAAVAVAAPGRGIT  152

Query  143  ALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALP-RPRGISVLSGT-  200
            AL VD DPW GGIDLL+G    PGLRW DLAL+GG L   A+ AALP R   ++VLS + 
Sbjct  153  ALAVDADPWGGGIDLLLGCADLPGLRWGDLALRGGHLPSEALVAALPGRADAVAVLSASG  212

Query  201  RRGYELDAGPVDAVIDAGRRG-GVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACA  259
                E+ +  + AV+DAGRR  G+TVV DLPRR   A  A LD AD+V+LV    VR CA
Sbjct  213  ATAPEIPSEALLAVLDAGRRSVGITVV-DLPRRADPAVTACLDVADVVLLVCAATVRGCA  271

Query  260  AAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGL  319
            AA +++  +     +  LVVRGPSPGGL A +V    G+PLL SMR QP L  QL+  GL
Sbjct  272  AARSLSDGVLRRARSARLVVRGPSPGGLSARDVERAVGLPLLTSMRPQPGLDAQLDGNGL  331

Query  320  RLRRRSVLASAARRVL  335
            RLR+ S LA+AA RVL
Sbjct  332  RLRKGSPLAAAAGRVL  347


>gi|258650975|ref|YP_003200131.1| hypothetical protein Namu_0728 [Nakamurella multipartita DSM 
44233]
 gi|258554200|gb|ACV77142.1| hypothetical protein Namu_0728 [Nakamurella multipartita DSM 
44233]
Length=359

 Score =  180 bits (456),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 152/347 (44%), Positives = 192/347 (56%), Gaps = 15/347 (4%)

Query  4    DPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRRTHV  63
            D GL DE+ R+AAA GV + H   R P SR  W  A  ++LD A           RR  +
Sbjct  16   DEGLLDEVLRIAAAAGVEMAHC--REPTSRTLWRTAPVILLDAAQVRAAAEARPARRPGI  73

Query  64   SVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAVIGG  123
             V+   +   A W   + +G    L +   E EL+  LA++      DG C   VAV+G 
Sbjct  74   VVIVDADPPEAMWELCVRLGVDRTLHVHRDEVELIELLADSVRDGPADGRC---VAVVGA  130

Query  124  RGGAGASLFAVALA----QAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRL  179
             GGAGAS+FA A+A    ++   ALL+D DPW  G+D+++G E +PGLRW DL+   GRL
Sbjct  131  CGGAGASVFAGAVAFAGARSGRPALLLDCDPWGAGLDVILGVEHSPGLRWSDLSATAGRL  190

Query  180  NWSAVRAALPR----PRGISVLSGTRR-GYELDAGPVDAVIDAGRRGGVTVVCDLPRRLT  234
                +  ALPR    P GISVL+  R   ++LD   VD VIDAGRR G   V DLPR   
Sbjct  191  PVGELVRALPRIRLGPAGISVLAHDRETVHDLDPDVVDVVIDAGRRSGAVTVVDLPRPPG  250

Query  235  DATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVAD  294
             A    L+  DLVVLV P DVR C AA  +   L+  +  +GLVVRGPSP G+ A +VA 
Sbjct  251  PAADRVLERCDLVVLVVPADVRGCWAADRICRRLSGFDVAVGLVVRGPSPCGIGADDVAG  310

Query  295  VAGVPLLASMRAQPRLAEQLEHG-GLRLRRRSVLASAARRVLGVLPR  340
              G+PLLA MRA+  LA +LE G  L    R  L  AARRVL  L R
Sbjct  311  SLGLPLLAQMRAESGLANELEFGLSLASGGRRPLLKAARRVLAELDR  357


>gi|111021315|ref|YP_704287.1| hypothetical protein RHA1_ro04339 [Rhodococcus jostii RHA1]
 gi|110820845|gb|ABG96129.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=393

 Score =  176 bits (447),  Expect = 4e-42, Method: Compositional matrix adjust.
 Identities = 140/310 (46%), Positives = 179/310 (58%), Gaps = 9/310 (2%)

Query  32   SRKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHVLRMP  91
            +R  W +A  +VLD  AA  C      RR  V +  G       W  A  VGA+HVL +P
Sbjct  73   ARHVWGSAPIIVLDARAAAACRNRLPRRRRVVLLCDGP-PGIDEWRIATAVGAEHVLAVP  131

Query  92   EQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAAD-ALLVDLDP  150
            E E  LV  L E  +    DG   AVV   GG G +  +      A +    ALL+D D 
Sbjct  132  EDESALVAVLGEQPQRPDADGTVVAVVGGCGGAGASTLAAATALTAASRPQPALLLDTDS  191

Query  151  WAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALP-RPRGISVLSGTRRGYELDAG  209
            W  G+D+L+G E  PGLRW  L+++GGR++  A+R ALP R   + VL+ +R G+   AG
Sbjct  192  WGSGLDVLLGIEDVPGLRWSGLSIEGGRISSGALRDALPARGERLRVLACSRTGH--GAG  249

Query  210  PVDA----VIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMA  265
            P +A    V DAGR  G  VVCD+ R     T+  L+ ADLVVLV P  VRAC AA  ++
Sbjct  250  PTEAAVRAVTDAGRHAGDLVVCDVSRFPGPVTETVLELADLVVLVVPATVRACIAAGKVS  309

Query  266  PVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRS  325
              +T  NPN GLVVRGP+PGGLR A++A+V  +PL+ASMRA+  L   LEHGGLR  RRS
Sbjct  310  QWITERNPNQGLVVRGPAPGGLRGADIAEVLDLPLIASMRAERALTGMLEHGGLRPGRRS  369

Query  326  VLASAARRVL  335
             L +AA  VL
Sbjct  370  PLGAAAEAVL  379


>gi|226363659|ref|YP_002781441.1| hypothetical protein ROP_42490 [Rhodococcus opacus B4]
 gi|226242148|dbj|BAH52496.1| hypothetical protein [Rhodococcus opacus B4]
Length=361

 Score =  174 bits (442),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 140/310 (46%), Positives = 179/310 (58%), Gaps = 9/310 (2%)

Query  32   SRKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHVLRMP  91
            +R +W +A  VVLD  AA  C      RR  V +  G       W  A  VGA+HVL +P
Sbjct  41   ARHSWGSAPIVVLDARAAAACRNRLPRRRRVVLLCDGPPGID-EWRIATAVGAEHVLAVP  99

Query  92   EQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAAD-ALLVDLDP  150
            + E  LV  L E  +    DG   AVV   GG G +  +      A       LL+D D 
Sbjct  100  DDESALVAVLGEQPQRPEADGTVVAVVGGCGGAGASTLAAATALTAATRPQPTLLLDTDS  159

Query  151  WAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALP-RPRGISVLSGTRRGYELDAG  209
            W  G+DLL+G E  PGLRW  L+++GGR++ +A+R ALP R   + VL+ +R G+   AG
Sbjct  160  WGSGLDLLLGIEDVPGLRWSGLSIEGGRISSAALRDALPARGEHLRVLACSRTGH--GAG  217

Query  210  P----VDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMA  265
            P    V AV DAGR  G  VVCD+ R      +A ++ ADLVVLV P  VRAC AA  ++
Sbjct  218  PTAAAVRAVTDAGRHAGDLVVCDVSRFPGPVAEAVVELADLVVLVVPATVRACIAAGKVS  277

Query  266  PVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRS  325
              +T  NPN GLVVRGP+PGGLR A+VA+V  +PL+ASMRA+  +   LEHGGLR  RRS
Sbjct  278  HWITERNPNQGLVVRGPAPGGLRGADVAEVLDLPLIASMRAERAITGMLEHGGLRPGRRS  337

Query  326  VLASAARRVL  335
             L +AA  VL
Sbjct  338  PLGAAAEAVL  347


>gi|325675228|ref|ZP_08154913.1| hypothetical protein HMPREF0724_12695 [Rhodococcus equi ATCC 
33707]
 gi|325553934|gb|EGD23611.1| hypothetical protein HMPREF0724_12695 [Rhodococcus equi ATCC 
33707]
Length=372

 Score =  168 bits (426),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 147/327 (45%), Positives = 189/327 (58%), Gaps = 18/327 (5%)

Query  30   PVSRKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHVLR  89
            PV R  W +A  VVLD AAA  C    LPRR  V ++       A W AA  VGA  VL 
Sbjct  46   PVGRSVWMSADLVVLDAAAAREC-AAGLPRRDRVVIVCSGVPGIADWQAAAEVGADRVLG  104

Query  90   MPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQA---------A  140
            +P  E  LV   A+   + R+ G  GAVV+V+ G GGAGAS  A A+A A         A
Sbjct  105  LPADEDVLVAVFADR-NTRREAG--GAVVSVVAGSGGAGASTMAAAIALAGARARKTDRA  161

Query  141  ADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGT  200
               LL+D DP   G+DLL+G E APGLRW  LA++GGR+   A+ AALP   G+SVL+  
Sbjct  162  PGVLLLDADPLGSGLDLLLGVERAPGLRWSGLAVEGGRVLADALHAALPAQAGVSVLACD  221

Query  201  R--RGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRAC  258
            R  R   L      AV++AGRR G  VVCD+ R   +  ++ ++ +DLVV+V P  VR  
Sbjct  222  RDSRTGGLTPAAATAVVEAGRRAGCLVVCDVARHPGEVGESVVELSDLVVVVVPATVRGG  281

Query  259  AAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGG  318
             A+  +   +T  NP+ G+VVRGP+PGGLR  ++A+    P++A MR  PRL   LE GG
Sbjct  282  VASGRVLSWITQRNPHRGIVVRGPAPGGLRGTDLAETLDAPVIAVMRPAPRLDAMLERGG  341

Query  319  LRLRRRSVLASAARRVLGVL---PRAG  342
            L    RS LA+AAR VL VL   PR+G
Sbjct  342  LDPGERSPLAAAARSVLDVLAARPRSG  368


>gi|312138009|ref|YP_004005345.1| membrane protein [Rhodococcus equi 103S]
 gi|311887348|emb|CBH46659.1| putative membrane protein [Rhodococcus equi 103S]
Length=372

 Score =  168 bits (425),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 147/327 (45%), Positives = 189/327 (58%), Gaps = 18/327 (5%)

Query  30   PVSRKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHVLR  89
            PV R  W +A  VVLD AAA  C    LPRR  V ++       A W AA  VGA  VL 
Sbjct  46   PVGRSVWMSADLVVLDAAAAREC-AAGLPRRDRVVIVCSGVPGIADWQAAAEVGADRVLG  104

Query  90   MPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQA---------A  140
            +P  E  LV   A+   + R+ G  GAVV+V+ G GGAGAS  A A+A A         A
Sbjct  105  LPADEDVLVAVFADR-NTRREAG--GAVVSVVAGSGGAGASTMAAAIALAGARARKTDRA  161

Query  141  ADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGT  200
               LL+D DP   G+DLL+G E APGLRW  LA++GGR+   A+ AALP   G+SVL+  
Sbjct  162  PGVLLLDADPLGSGLDLLLGVERAPGLRWSGLAVEGGRVLADALHAALPAQAGVSVLACD  221

Query  201  R--RGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRAC  258
            R  R   L      AV++AGRR G  VVCD+ R   +  ++ ++ +DLVV+V P  VR  
Sbjct  222  RDSRMGGLTPAAATAVVEAGRRAGCLVVCDVARHPGEVGESVVELSDLVVVVVPATVRGG  281

Query  259  AAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGG  318
             A+  +   +T  NP+ G+VVRGP+PGGLR  ++A+    P++A MR  PRL   LE GG
Sbjct  282  VASGRVLSWITQRNPHRGIVVRGPAPGGLRGTDLAETLDAPVIAVMRPAPRLDAMLERGG  341

Query  319  LRLRRRSVLASAARRVLGVL---PRAG  342
            L    RS LA+AAR VL VL   PR+G
Sbjct  342  LDPGERSPLAAAARSVLDVLAARPRSG  368


>gi|262200532|ref|YP_003271740.1| hypothetical protein Gbro_0517 [Gordonia bronchialis DSM 43247]
 gi|262083879|gb|ACY19847.1| hypothetical protein Gbro_0517 [Gordonia bronchialis DSM 43247]
Length=352

 Score =  159 bits (403),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 144/339 (43%), Positives = 190/339 (57%), Gaps = 18/339 (5%)

Query  2    LTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRRT  61
            L  P L D+  R AAA G R++         R+ W  + AV++D AA D       PRR 
Sbjct  8    LVGPDLLDDAARCAAAAGYRMIVADAAD--CRRAWLTSRAVLVDPAALDLLTAARPPRRD  65

Query  62   HVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAVI  121
             V ++TG E    +W  A+ +GA  VL +P  +G LVR L+E     R        VA++
Sbjct  66   GVILVTGGEPPPRSWRLALDLGAADVLTLPGDDGRLVRLLSELRAPRRSPA---GAVALM  122

Query  122  GGRGGAGASLFAVAL----AQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGG  177
               GGAGAS+ AVA+    A+AA   LL+DLD    G DLL+G E   GLRW DL+L+GG
Sbjct  123  SAHGGAGASVLAVAVGLTAARAATRTLLLDLDDLGPGADLLLGIEDRSGLRWGDLSLEGG  182

Query  178  RLNWSAVRAALPRPRGISVLSGTR----RGYELDAGPVDAVIDAGRRGGVTVVCDLPRRL  233
             +   A+  ALP+   +  +  +R    R    DA  V AVIDAGR  G  VV DLPR  
Sbjct  183  VVVGGALHHALPKAEEMLSVLASRGDDPRPPRADA--VTAVIDAGRGNGDLVVIDLPRTE  240

Query  234  TDATQAALDAADLVVLVSPCDVRACAAAA-TMAPVLTAINPNLGLVVRGPSPGGLRAAEV  292
               T+AA+++ DLVVLV+   V  CAAA  T+  +L  +   + L +RGPSPGGLRA +V
Sbjct  241  GAVTRAAIESVDLVVLVTTPTVLGCAAARRTVGRLLDGVR--VELCIRGPSPGGLRAGQV  298

Query  293  ADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAA  331
            AD  G+PLLAS R  PR+A +LE G  R+  R+ L  AA
Sbjct  299  ADAVGLPLLASYRPDPRMAARLESGRPRVTPRNPLGRAA  337


>gi|257057543|ref|YP_003135375.1| hypothetical protein Svir_35930 [Saccharomonospora viridis DSM 
43017]
 gi|256587415|gb|ACU98548.1| hypothetical protein Svir_35930 [Saccharomonospora viridis DSM 
43017]
Length=364

 Score =  155 bits (393),  Expect = 7e-36, Method: Compositional matrix adjust.
 Identities = 127/332 (39%), Positives = 181/332 (55%), Gaps = 15/332 (4%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            ++TD  +R+ + R+AAAVG  + H+      +R  WS A  V++DH        + +PRR
Sbjct  25   LMTDDTVREHVVRLAAAVGCELHHVTD-SAAARPRWSDAPLVLIDHVP----DVIDVPRR  79

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            + V ++         W AA+ +G   V  +P  E  +V  LA+ AE   D    G V+AV
Sbjct  80   SGVLLVRTDTPTPEQWKAAVALGVDGVAVLPADEDVVVTALADVAEKPSDRE--GRVLAV  137

Query  121  IGGRGGAGASLFAVALAQAAAD----ALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQG  176
            IGGRGGAGAS+ A ++  AAA     ALLVD DP  GG+DL++G E   GLRW D+ +  
Sbjct  138  IGGRGGAGASVLAASVGLAAARSGGAALLVDCDPLGGGLDLVLGAEADEGLRWSDVRVSS  197

Query  177  GRLNWSAVRAALP-RPRG---ISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRR  232
            GR++ + + A LP R RG   +S+LS  R G       + AV+DAGRR G TVVCD+PR 
Sbjct  198  GRVSMAELDAVLPFRRRGRGRMSILSCDRTGPGPTEAALAAVVDAGRRAGRTVVCDVPRH  257

Query  233  LTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEV  292
             + A    L  ADL VLV P DVR C +AA +   L+     + +VVR  +   L  A+V
Sbjct  258  PSPAADEVLRRADLAVLVVPADVRGCVSAARVRHRLSERIARIAVVVRASAATSLSEADV  317

Query  293  ADVAGVPLLASMRAQPRLAEQLEHGGLRLRRR  324
             +  G P+L  +R +  +   ++ G     RR
Sbjct  318  VEAVGAPVLGWLRDERSMVRAMDRGRFDPGRR  349


>gi|54022322|ref|YP_116564.1| hypothetical protein nfa3580 [Nocardia farcinica IFM 10152]
 gi|54013830|dbj|BAD55200.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=369

 Score =  147 bits (371),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 148/347 (43%), Positives = 195/347 (57%), Gaps = 11/347 (3%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            ++ D  LR+E+ RVAAA    +V      PV R +W+ A  V+LD A+A  C      RR
Sbjct  17   LIRDVRLREEVRRVAAAAERELVE--AEPPVGRHSWAGAPLVILDTASALECAAADHQRR  74

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
              V ++T  E   A W AA  VGA+ V+ +P     L+ + AE  E     G+  AVV  
Sbjct  75   MGVVLVTEGEPGLAAWQAAAAVGAERVIALPGAAVGLIEKFAEHGEPRAGGGVVVAVVGA  134

Query  121  IGGRGG---AGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGG  177
             GG G    AG +    A        LLVD  P  GG+DLL+G E+APGLRW DL ++ G
Sbjct  135  CGGAGASVLAGVTALRAAAVGFRRHTLLVDGAPLGGGLDLLLGLESAPGLRWSDLVVEDG  194

Query  178  RLNWSAVRAALPRP-RGISVLSGTRRGYELDAGPV-----DAVIDAGRRGGVTVVCDLPR  231
            R+   A+  ALP    G+ VLS  R G     G +      AV++AGR  G  V+CD+  
Sbjct  195  RVAAGALHEALPTAGSGLVVLSCGRAGAGRLPGRIGPAAAHAVLEAGRAAGDLVICDVSG  254

Query  232  RLTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAE  291
                A +  LD+ADLVVLV P  +RA AAA  ++  +   NPN GL+VRGP+PGGLR  E
Sbjct  255  ERGPAAEQMLDSADLVVLVVPARLRAAAAAEAVSAYVGTRNPNQGLIVRGPAPGGLRGQE  314

Query  292  VADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVL  338
            +A++  +PLLA++RAQP L  +LE GGLRL RR  L +AA  VL VL
Sbjct  315  IAEILDLPLLAAVRAQPDLPGRLERGGLRLPRRGPLVTAADAVLAVL  361


>gi|269129024|ref|YP_003302394.1| hypothetical protein Tcur_4839 [Thermomonospora curvata DSM 43183]
 gi|268313982|gb|ACZ00357.1| hypothetical protein Tcur_4839 [Thermomonospora curvata DSM 43183]
Length=359

 Score =  141 bits (355),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 139/313 (45%), Positives = 176/313 (57%), Gaps = 9/313 (2%)

Query  32   SRKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHVLRMP  91
            +R  W     V++    AD      + RR+ V ++T    A   + AA+ VGAQ +  +P
Sbjct  38   ARAQWRRPPLVLVGADLADGLAAGGIARRSGVVLVTTETDAPENFRAAVGVGAQDLATLP  97

Query  92   EQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAAD----ALLVD  147
            E E  LV  LA AAE     G   A V V GGRGGAGAS+ A  L+ A A      LLVD
Sbjct  98   EDEPWLVDALAAAAEPG---GGRAATVCVAGGRGGAGASVLAAMLSLAGARGGLRVLLVD  154

Query  148  LDPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGTRRGYE-L  206
             DP  GGIDLL+G E APG RWPDLA + GRL  + +R ALP   G+ +LS  R   E +
Sbjct  155  GDPLGGGIDLLLGQENAPGCRWPDLAGRRGRLGAATLRRALPAVHGVVMLSWGRTEAEPV  214

Query  207  DAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMAP  266
            DA  + AV+DA RRG   +V DL RR  DA +AAL  AD  +LV P ++RA AAA  +A 
Sbjct  215  DAETMRAVLDAARRGFDLIVVDLSRRPADADRAALRVADRTLLVVPAELRATAAADKVAA  274

Query  267  VLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGL-RLRRRS  325
             L     ++GL+VRGPSPGGL    +A+  G+PLL +     RL   LEHG L RL RR 
Sbjct  275  ALHRDTDDIGLIVRGPSPGGLPGEAMAEALGLPLLGAFEDDRRLPAALEHGDLVRLSRRG  334

Query  326  VLASAARRVLGVL  338
             L     R++  L
Sbjct  335  SLPDLCDRLIAEL  347


>gi|300790610|ref|YP_003770901.1| hypothetical protein AMED_8806 [Amycolatopsis mediterranei U32]
 gi|299800124|gb|ADJ50499.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
 gi|340532299|gb|AEK47504.1| hypothetical protein RAM_45185 [Amycolatopsis mediterranei S699]
Length=355

 Score =  141 bits (355),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 129/345 (38%), Positives = 185/345 (54%), Gaps = 22/345 (6%)

Query  4    DPGLRDELDRVAAAVGVRVVHLGGRHP---VSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            D  + DE+ RVAA  G  +     R P    +   WS A  VVLD  A       ALPRR
Sbjct  12   DETVLDEILRVAAVAGCEL----DRAPDLTAASGHWSRAPLVVLDEEAVRHPP--ALPRR  65

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
            + + ++       ATW  A   G + V+ +P++E  L    A+  E+  +      V+ V
Sbjct  66   SGILLVCKGSPGPATWEHAFHSGVERVIALPDEESALAGAFADVVETPAEQPG--LVLGV  123

Query  121  IGGRGGAGASLFAVALAQAAAD----ALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQG  176
            +GGRGGAGAS+FA  LA AA      ALLVD DP +GG+D+L+G E  PG RWPD+ L G
Sbjct  124  VGGRGGAGASVFAATLALAADSDPGGALLVDCDPLSGGLDVLLGLEKTPGARWPDVHLSG  183

Query  177  GRLNWSAVRAALPRPR----GISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRR  232
             R++ S++ A LP+ R     + VL+    G   +   + A++ AGRR G TVVCDLPR 
Sbjct  184  -RVSVSSLAADLPQRRHRGGSLPVLASGPDGDGPEVESLSAILSAGRRAGRTVVCDLPRA  242

Query  233  LTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEV  292
            L +A++ A+  ADLV+L+ P ++RAC AA  +   L+ +   +G+V  G S     A   
Sbjct  243  LGEASEEAVLRADLVLLMVPLEIRACLAARKVLNRLSKLTARIGVVTCGHSKDP--AVRT  300

Query  293  ADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGV  337
            A + G PL+ASM  +  L + LE      + +  LA  A  +L +
Sbjct  301  AALIGPPLMASMPPERGLWQALERAEFPTKPKGPLAKTAAEILAI  345


>gi|326383475|ref|ZP_08205162.1| hypothetical protein SCNU_11081 [Gordonia neofelifaecis NRRL 
B-59395]
 gi|326197881|gb|EGD55068.1| hypothetical protein SCNU_11081 [Gordonia neofelifaecis NRRL 
B-59395]
Length=347

 Score =  135 bits (339),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 132/338 (40%), Positives = 177/338 (53%), Gaps = 10/338 (2%)

Query  1    MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR  60
            +L D  L D+L R +AA G  +V    R    R  W  A AVV D  A      L LP+R
Sbjct  7    VLADESLHDDLARCSAAAGYTMVLGDPRQ--CRHQWLRAGAVVADSDALGVLAHLDLPQR  64

Query  61   THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV  120
              +  +  ++     W + +T+GA     +P+ E  LV  L+ A E  R        VAV
Sbjct  65   GGLLAVGSSDGDARLWRSGLTLGADGGFLLPDDEAGLVAMLSRAREPRRHPA---RAVAV  121

Query  121  IGGRGGAGASLFAVALAQA---AADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGG  177
            + G GGAGAS  A A+A      ++ LL+D+D    G DL++G E  PGLRW D+  + G
Sbjct  122  VPGHGGAGASTLAAAVALVAAQTSNVLLLDVDQAGPGADLMLGVEAEPGLRWSDVNGETG  181

Query  178  RLNWSAVRAALPRPRGISVLSGTRRGYE-LDAGPVDAVIDAGRRGGVTVVCDLPRRLTDA  236
             +  +A+R+A+PR RG+ VL+  R G   L +  V AV+DAGR  G  VV D+ R     
Sbjct  182  SIGGAALRSAVPRTRGVGVLACDRSGRTPLRSDTVLAVLDAGRGAGDVVVADVGREPGPV  241

Query  237  TQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVA  296
            T   +D+ DLVV+V+   V   AA       +     +L L+VRGPSP GL A +VA   
Sbjct  242  TAGIVDSVDLVVVVTTATVPGVAATRRTVARMLHERSSL-LMVRGPSPSGLTAEQVASSI  300

Query  297  GVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRV  334
            GV LL S RA   L  + E GGL LR R+ LA AAR V
Sbjct  301  GVELLGSYRADAALPGRCEAGGLVLRSRAPLARAARSV  338


>gi|256374430|ref|YP_003098090.1| hypothetical protein Amir_0275 [Actinosynnema mirum DSM 43827]
 gi|255918733|gb|ACU34244.1| hypothetical protein Amir_0275 [Actinosynnema mirum DSM 43827]
Length=371

 Score =  134 bits (338),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 142/314 (46%), Positives = 176/314 (57%), Gaps = 12/314 (3%)

Query  33   RKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHVLRMPE  92
            R  W  A  V+LD  A   C    LPRR  V +++       TW  A+ +G +  +    
Sbjct  66   RGRWHDAPVVLLDERAVVACAEAGLPRRPGVLLVSTGPPGELTWPRAVELGVERAVSADA  125

Query  93   QEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAAD----ALLVDL  148
                L+R+  E A  A      G V+AV+GGRGGAGAS+ A A+A+A A     +LLVD 
Sbjct  126  GLVALLRDATEVAPEA------GRVLAVLGGRGGAGASVLAAAVARAVAASGGPSLLVDC  179

Query  149  DPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGTRRGYELDA  208
            DP  GG+DL +G ET+ G+RW DL L G R+  +A+R  LP   G+ VLS  R G    A
Sbjct  180  DPLGGGLDLALGAETSAGMRWSDLDLSG-RVPAAALRQVLPACGGVRVLSCGRDGEGPGA  238

Query  209  GPVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMAPVL  268
            G V +V++AGRR G  VVCDLPR+ T A  AALD ADL VLV P +VRACAAA  +A  L
Sbjct  239  GAVASVVEAGRRSGQVVVCDLPRQRTPAADAALDRADLAVLVVPAEVRACAAARGVARRL  298

Query  269  TAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLA  328
                     +VR  + GGL A EVA   GVPLL  MR Q +LA  L+ G      R  LA
Sbjct  299  AERGARTRALVRVRASGGLSAQEVAAAVGVPLLTRMRGQRQLASALDRGRFPTSTRGPLA  358

Query  329  SAARRVLGVLPRAG  342
             AA  VL VL RAG
Sbjct  359  KAATTVLEVL-RAG  371



Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 648422222280


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40