BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3660c
Length=350
Score E
Sequences producing significant alignments: (Bits) Value
gi|167970805|ref|ZP_02553082.1| hypothetical protein MtubH3_2330... 658 0.0
gi|15610796|ref|NP_218177.1| hypothetical protein Rv3660c [Mycob... 658 0.0
gi|306801289|ref|ZP_07437957.1| hypothetical protein TMHG_02720 ... 656 0.0
gi|306778015|ref|ZP_07416352.1| hypothetical protein TMAG_00149 ... 656 0.0
gi|253800701|ref|YP_003033702.1| hypothetical protein TBMG_03700... 656 0.0
gi|340628632|ref|YP_004747084.1| hypothetical protein MCAN_36801... 655 0.0
gi|289555921|ref|ZP_06445131.1| conserved hypothetical protein [... 655 0.0
gi|289445254|ref|ZP_06434998.1| conserved hypothetical protein [... 655 0.0
gi|289755785|ref|ZP_06515163.1| conserved hypothetical protein [... 654 0.0
gi|31794830|ref|NP_857323.1| hypothetical protein Mb3684c [Mycob... 654 0.0
gi|289572306|ref|ZP_06452533.1| conserved hypothetical protein [... 651 0.0
gi|254233156|ref|ZP_04926482.1| conserved hypothetical protein [... 550 2e-154
gi|240173380|ref|ZP_04752038.1| hypothetical protein MkanA1_2896... 497 1e-138
gi|15843273|ref|NP_338310.1| hypothetical protein MT3760 [Mycoba... 489 4e-136
gi|183985117|ref|YP_001853408.1| hypothetical protein MMAR_5148 ... 447 1e-123
gi|289441090|ref|ZP_06430834.1| conserved hypothetical protein [... 435 4e-120
gi|118619401|ref|YP_907733.1| hypothetical protein MUL_4233 [Myc... 416 3e-114
gi|118466891|ref|YP_879752.1| hypothetical protein MAV_0470 [Myc... 378 6e-103
gi|333992582|ref|YP_004525196.1| hypothetical protein JDM601_394... 374 1e-101
gi|342862005|ref|ZP_08718649.1| hypothetical protein MCOL_24060 ... 370 2e-100
gi|336460809|gb|EGO39694.1| helicase/secretion neighborhood CpaE... 365 6e-99
gi|41406513|ref|NP_959349.1| hypothetical protein MAP0415 [Mycob... 354 1e-95
gi|296166715|ref|ZP_06849139.1| conserved hypothetical protein [... 332 5e-89
gi|120406369|ref|YP_956198.1| hypothetical protein Mvan_5422 [My... 320 3e-85
gi|315446286|ref|YP_004079165.1| ATPase involved in chromosome p... 298 6e-79
gi|145221975|ref|YP_001132653.1| hypothetical protein Mflv_1383 ... 298 1e-78
gi|254822026|ref|ZP_05227027.1| hypothetical protein MintA_18982... 285 6e-75
gi|118472134|ref|YP_890391.1| hypothetical protein MSMEG_6171 [M... 284 1e-74
gi|108801769|ref|YP_641966.1| hypothetical protein Mmcs_4806 [My... 280 4e-73
gi|126437757|ref|YP_001073448.1| hypothetical protein Mjls_5193 ... 279 5e-73
gi|169627536|ref|YP_001701185.1| hypothetical protein MAB_0432 [... 247 2e-63
gi|157144133|dbj|BAF80050.1| smmB [Rhodococcus rhodochrous] 214 2e-53
gi|343926483|ref|ZP_08765988.1| hypothetical protein GOALK_060_0... 194 2e-47
gi|229494816|ref|ZP_04388572.1| conserved hypothetical protein [... 190 3e-46
gi|226303992|ref|YP_002763950.1| hypothetical protein RER_05030 ... 189 9e-46
gi|296394992|ref|YP_003659876.1| hypothetical protein Srot_2610 ... 188 1e-45
gi|331694290|ref|YP_004330529.1| helicase/secretion neighborhood... 184 2e-44
gi|296141577|ref|YP_003648820.1| hypothetical protein Tpau_3909 ... 182 1e-43
gi|258650975|ref|YP_003200131.1| hypothetical protein Namu_0728 ... 180 3e-43
gi|111021315|ref|YP_704287.1| hypothetical protein RHA1_ro04339 ... 176 4e-42
gi|226363659|ref|YP_002781441.1| hypothetical protein ROP_42490 ... 174 1e-41
gi|325675228|ref|ZP_08154913.1| hypothetical protein HMPREF0724_... 168 1e-39
gi|312138009|ref|YP_004005345.1| membrane protein [Rhodococcus e... 168 1e-39
gi|262200532|ref|YP_003271740.1| hypothetical protein Gbro_0517 ... 159 5e-37
gi|257057543|ref|YP_003135375.1| hypothetical protein Svir_35930... 155 7e-36
gi|54022322|ref|YP_116564.1| hypothetical protein nfa3580 [Nocar... 147 2e-33
gi|269129024|ref|YP_003302394.1| hypothetical protein Tcur_4839 ... 141 2e-31
gi|300790610|ref|YP_003770901.1| hypothetical protein AMED_8806 ... 141 2e-31
gi|326383475|ref|ZP_08205162.1| hypothetical protein SCNU_11081 ... 135 1e-29
gi|256374430|ref|YP_003098090.1| hypothetical protein Amir_0275 ... 134 2e-29
>gi|167970805|ref|ZP_02553082.1| hypothetical protein MtubH3_23300 [Mycobacterium tuberculosis
H37Ra]
gi|254552771|ref|ZP_05143218.1| hypothetical protein Mtube_20367 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|294992920|ref|ZP_06798611.1| hypothetical protein Mtub2_00035 [Mycobacterium tuberculosis
210]
17 more sequence titles
Length=357
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/350 (100%), Positives = 350/350 (100%), Gaps = 0/350 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct 8 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 67
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct 68 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 127
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct 128 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 187
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct 188 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 247
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct 248 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 307
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct 308 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 357
>gi|15610796|ref|NP_218177.1| hypothetical protein Rv3660c [Mycobacterium tuberculosis H37Rv]
gi|148663522|ref|YP_001285045.1| hypothetical protein MRA_3694 [Mycobacterium tuberculosis H37Ra]
gi|148824863|ref|YP_001289617.1| hypothetical protein TBFG_13690 [Mycobacterium tuberculosis F11]
20 more sequence titles
Length=350
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/350 (100%), Positives = 350/350 (100%), Gaps = 0/350 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
>gi|306801289|ref|ZP_07437957.1| hypothetical protein TMHG_02720 [Mycobacterium tuberculosis SUMu008]
gi|308351903|gb|EFP40754.1| hypothetical protein TMHG_02720 [Mycobacterium tuberculosis SUMu008]
Length=357
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct 8 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 67
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
THVSVLTGTE ATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct 68 THVSVLTGTEGATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 127
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct 128 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 187
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct 188 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 247
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct 248 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 307
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct 308 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 357
>gi|306778015|ref|ZP_07416352.1| hypothetical protein TMAG_00149 [Mycobacterium tuberculosis SUMu001]
gi|306974132|ref|ZP_07486793.1| hypothetical protein TMJG_00909 [Mycobacterium tuberculosis SUMu010]
gi|307081841|ref|ZP_07491011.1| hypothetical protein TMKG_00899 [Mycobacterium tuberculosis SUMu011]
gi|308213544|gb|EFO72943.1| hypothetical protein TMAG_00149 [Mycobacterium tuberculosis SUMu001]
gi|308356404|gb|EFP45255.1| hypothetical protein TMJG_00909 [Mycobacterium tuberculosis SUMu010]
gi|308360495|gb|EFP49346.1| hypothetical protein TMKG_00899 [Mycobacterium tuberculosis SUMu011]
Length=357
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct 8 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 67
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
THVSVLTGTEAATATWAA ITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct 68 THVSVLTGTEAATATWAAVITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 127
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct 128 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 187
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct 188 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 247
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct 248 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 307
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct 308 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 357
>gi|253800701|ref|YP_003033702.1| hypothetical protein TBMG_03700 [Mycobacterium tuberculosis KZN
1435]
gi|297636336|ref|ZP_06954116.1| hypothetical protein MtubK4_19520 [Mycobacterium tuberculosis
KZN 4207]
gi|297733329|ref|ZP_06962447.1| hypothetical protein MtubKR_19655 [Mycobacterium tuberculosis
KZN R506]
gi|313660661|ref|ZP_07817541.1| hypothetical protein MtubKV_19655 [Mycobacterium tuberculosis
KZN V2475]
gi|253322204|gb|ACT26807.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
Length=357
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct 8 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 67
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct 68 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 127
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct 128 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 187
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct 188 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 247
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRG SPGGLRAAEVADVAGVPL
Sbjct 248 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGSSPGGLRAAEVADVAGVPL 307
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct 308 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 357
>gi|340628632|ref|YP_004747084.1| hypothetical protein MCAN_36801 [Mycobacterium canettii CIPT
140010059]
gi|340006822|emb|CCC46011.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=350
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
THVSVLTGTEA TATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct 61 THVSVLTGTEAPTATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
>gi|289555921|ref|ZP_06445131.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|289440553|gb|EFD23046.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|328460430|gb|AEB05853.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length=350
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRG SPGGLRAAEVADVAGVPL
Sbjct 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGSSPGGLRAAEVADVAGVPL 300
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
>gi|289445254|ref|ZP_06434998.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289418212|gb|EFD15413.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=350
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LASMRAQPRLAEQ EHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct 301 LASMRAQPRLAEQPEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
>gi|289755785|ref|ZP_06515163.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289696372|gb|EFD63801.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=350
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCG LALPRR
Sbjct 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGWLALPRR 60
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
>gi|31794830|ref|NP_857323.1| hypothetical protein Mb3684c [Mycobacterium bovis AF2122/97]
gi|121639573|ref|YP_979797.1| hypothetical protein BCG_3718c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224992070|ref|YP_002646759.1| hypothetical protein JTY_3719 [Mycobacterium bovis BCG str. Tokyo
172]
gi|31620427|emb|CAD95870.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121495221|emb|CAL73707.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224775185|dbj|BAH27991.1| hypothetical protein JTY_3719 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341603594|emb|CCC66275.1| conserved hypothetical protein [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=350
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 0/350 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
MLTDPGLRDELDRVAAAVGVRVVHLGGRH VSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHLVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
>gi|289572306|ref|ZP_06452533.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339633651|ref|YP_004725293.1| hypothetical protein MAF_36670 [Mycobacterium africanum GM041182]
gi|289536737|gb|EFD41315.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339333007|emb|CCC28736.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=350
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/350 (99%), Positives = 348/350 (99%), Gaps = 0/350 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
MLTDPGLRDELDRVAAAVGVRVVHLGGRH VSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHLVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
WSAVRAALPRPRGISVLSGTRRGYELDAGPV AVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVGAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
>gi|254233156|ref|ZP_04926482.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|124602949|gb|EAY61224.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=349
Score = 550 bits (1416), Expect = 2e-154, Method: Compositional matrix adjust.
Identities = 349/350 (99%), Positives = 349/350 (99%), Gaps = 1/350 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAA VVLDHAAADRCGRLALPRR
Sbjct 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAA-VVLDHAAADRCGRLALPRR 59
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct 60 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 119
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct 120 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 179
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA
Sbjct 180 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 239
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL
Sbjct 240 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 299
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA
Sbjct 300 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 349
>gi|240173380|ref|ZP_04752038.1| hypothetical protein MkanA1_28966 [Mycobacterium kansasii ATCC
12478]
Length=347
Score = 497 bits (1280), Expect = 1e-138, Method: Compositional matrix adjust.
Identities = 280/350 (80%), Positives = 304/350 (87%), Gaps = 3/350 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
M+T LRDELDR+AAAVGVRVVH G V+RKTWSAAAAVVLD AAA+RCGR+ALPRR
Sbjct 1 MMTAGELRDELDRIAAAVGVRVVHSGS---VTRKTWSAAAAVVLDQAAAERCGRIALPRR 57
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
HVSVLTG+E TATW AI VGA+ VLRMP+QE EL+RELA+AA SARD+GI G VVAV
Sbjct 58 AHVSVLTGSEPVTATWTVAIAVGAERVLRMPDQENELIRELADAAASARDEGIRGKVVAV 117
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGG GGAGASLFAVALA +AA ALLVDLDPW GGIDLLVGGE+APG+RWPDLALQGGRL+
Sbjct 118 IGGCGGAGASLFAVALAHSAAQALLVDLDPWGGGIDLLVGGESAPGVRWPDLALQGGRLH 177
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
WSAV ALPR RGIS+LSGTRRG ELDA PV+AV+DAGRRGGVTVVCDLPRR+TDA+ AA
Sbjct 178 WSAVSEALPRHRGISMLSGTRRGCELDAAPVEAVVDAGRRGGVTVVCDLPRRVTDASHAA 237
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
LD ADLVVLV P DVRACAA A + PVLTAINPNLGLVVRGPSPGGLRAAEVAD+AGVPL
Sbjct 238 LDCADLVVLVCPSDVRACAATAAIVPVLTAINPNLGLVVRGPSPGGLRAAEVADIAGVPL 297
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LASMRAQPRLA QLEHGGLRLRRRS LA+AARRVL L G +GRAA
Sbjct 298 LASMRAQPRLAGQLEHGGLRLRRRSTLAAAARRVLAALGHPQGGLNGRAA 347
>gi|15843273|ref|NP_338310.1| hypothetical protein MT3760 [Mycobacterium tuberculosis CDC1551]
gi|13883631|gb|AAK48124.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
Length=261
Score = 489 bits (1258), Expect = 4e-136, Method: Compositional matrix adjust.
Identities = 261/261 (100%), Positives = 261/261 (100%), Gaps = 0/261 (0%)
Query 90 MPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAADALLVDLD 149
MPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAADALLVDLD
Sbjct 1 MPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAADALLVDLD 60
Query 150 PWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGTRRGYELDAG 209
PWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGTRRGYELDAG
Sbjct 61 PWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGTRRGYELDAG 120
Query 210 PVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLT 269
PVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLT
Sbjct 121 PVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLT 180
Query 270 AINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLAS 329
AINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLAS
Sbjct 181 AINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLAS 240
Query 330 AARRVLGVLPRAGSGRHGRAA 350
AARRVLGVLPRAGSGRHGRAA
Sbjct 241 AARRVLGVLPRAGSGRHGRAA 261
>gi|183985117|ref|YP_001853408.1| hypothetical protein MMAR_5148 [Mycobacterium marinum M]
gi|183178443|gb|ACC43553.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=369
Score = 447 bits (1150), Expect = 1e-123, Method: Compositional matrix adjust.
Identities = 268/353 (76%), Positives = 293/353 (84%), Gaps = 3/353 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
ML DP LRDELDRVAAAVGVR+VH GR PV+RK WSAA AVVLD AAA + ALPRR
Sbjct 17 MLVDPKLRDELDRVAAAVGVRIVHGDGRKPVTRKAWSAAGAVVLDPAAARGLSQAALPRR 76
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGI---CGAV 117
HV +LTG EA T TWA A+ +GA VL+MPEQEGEL+RELAEA E+ARD+G+ G V
Sbjct 77 AHVCLLTGAEAGTDTWATAVAIGAGAVLQMPEQEGELIRELAEAVEAARDEGLGGEVGQV 136
Query 118 VAVIGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGG 177
+AVIGG GGAG SLFA ALAQ+AADALLVDLDPW GGIDLL+G E PGLRWPDL+LQGG
Sbjct 137 IAVIGGSGGAGVSLFAAALAQSAADALLVDLDPWGGGIDLLMGCENLPGLRWPDLSLQGG 196
Query 178 RLNWSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDAT 237
RL WSAVR LPR RGIS+LSGTRRG ELD G V A+IDAGRRG VTVVCDLPRRLTDA
Sbjct 197 RLAWSAVRDGLPRHRGISLLSGTRRGQELDCGAVGALIDAGRRGAVTVVCDLPRRLTDAV 256
Query 238 QAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAG 297
Q ALD ADLVVLV PCDVR+CAA AT+ PVL AINP+LGLVVRGPSPGGLRAAEVAD+AG
Sbjct 257 QVALDRADLVVLVCPCDVRSCAATATIVPVLAAINPHLGLVVRGPSPGGLRAAEVADIAG 316
Query 298 VPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
VPLLASMR QPRL EQLEHGGLRLRRRS LA+AARRVL +LP + + GRAA
Sbjct 317 VPLLASMRVQPRLVEQLEHGGLRLRRRSPLAAAARRVLALLPNSTAVPGGRAA 369
>gi|289441090|ref|ZP_06430834.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289414009|gb|EFD11249.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=347
Score = 435 bits (1119), Expect = 4e-120, Method: Compositional matrix adjust.
Identities = 229/229 (100%), Positives = 229/229 (100%), Gaps = 0/229 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR
Sbjct 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV
Sbjct 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN
Sbjct 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDL 229
WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDL
Sbjct 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDL 229
>gi|118619401|ref|YP_907733.1| hypothetical protein MUL_4233 [Mycobacterium ulcerans Agy99]
gi|118571511|gb|ABL06262.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=331
Score = 416 bits (1069), Expect = 3e-114, Method: Compositional matrix adjust.
Identities = 238/315 (76%), Positives = 260/315 (83%), Gaps = 3/315 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
ML DP LRDELDRVAAAVGVR+VH GR PV+RK WSAA AVVLD AAA + ALPRR
Sbjct 17 MLVDPKLRDELDRVAAAVGVRIVHGDGRKPVTRKAWSAAGAVVLDPAAARGLTQAALPRR 76
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGI---CGAV 117
HV +LTG EA T TW A+ +GA VL+MPEQEGEL+RELAEA E+ARD+G+ G V
Sbjct 77 AHVCLLTGAEAGTDTWVTAVAIGAGAVLQMPEQEGELIRELAEAVEAARDEGLGGEVGQV 136
Query 118 VAVIGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGG 177
++VIGG GGAG SLFA ALAQ+AADALLVDLDPW GGIDLL+G E PGLRWP L+LQGG
Sbjct 137 ISVIGGSGGAGVSLFAAALAQSAADALLVDLDPWGGGIDLLMGCENLPGLRWPGLSLQGG 196
Query 178 RLNWSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDAT 237
RL WSAVR LPR RGIS+LSGTRRG ELD G V A+IDAGRRG VTVVCDLPRRLTDA
Sbjct 197 RLAWSAVRDGLPRHRGISLLSGTRRGQELDCGAVGALIDAGRRGAVTVVCDLPRRLTDAV 256
Query 238 QAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAG 297
Q ALD ADLVVLV PCDVR+CAA AT+ PVL AINP+LGLVVRGPSPGGLRAAEVAD+AG
Sbjct 257 QVALDRADLVVLVCPCDVRSCAATATIVPVLAAINPHLGLVVRGPSPGGLRAAEVADIAG 316
Query 298 VPLLASMRAQPRLAE 312
VPLLASMR QPRL E
Sbjct 317 VPLLASMRVQPRLVE 331
>gi|118466891|ref|YP_879752.1| hypothetical protein MAV_0470 [Mycobacterium avium 104]
gi|118168178|gb|ABK69075.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=350
Score = 378 bits (971), Expect = 6e-103, Method: Compositional matrix adjust.
Identities = 261/350 (75%), Positives = 293/350 (84%), Gaps = 0/350 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
ML +P LR ELDRVAAA GVRVVH G VSRKTW+AAAAVVLD AAA RCGR ALPRR
Sbjct 1 MLAEPELRAELDRVAAAAGVRVVHAGDAAAVSRKTWAAAAAVVLDAAAAARCGRWALPRR 60
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
HV+VLT E AT TWAAA+ +GA VLR+PE E +LV ELAEAAES+RDDG G VAV
Sbjct 61 DHVTVLTAAEPATTTWAAAVRIGAARVLRLPEHEADLVGELAEAAESSRDDGQRGHAVAV 120
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGG GGAGASL AVALAQAA DALLVDLDPW GGI+LL+GGE PGLRWPDLALQGGRLN
Sbjct 121 IGGCGGAGASLLAVALAQAAGDALLVDLDPWGGGIELLLGGENTPGLRWPDLALQGGRLN 180
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
W+AVR ALPR RG+SVLSGTRRG+E+DAGPV AV+DAGRRG V+V+CDLPRR TDA QAA
Sbjct 181 WAAVRDALPRHRGVSVLSGTRRGHEVDAGPVHAVVDAGRRGAVSVICDLPRRFTDAAQAA 240
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
L AADLVV+VS CDVRACAA +APVL A+NPN+GLVVRGPSPGGLRAAE+A + G+PL
Sbjct 241 LGAADLVVVVSRCDVRACAATGALAPVLAAVNPNVGLVVRGPSPGGLRAAEIAGITGLPL 300
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LA+++AQP+L Q+E GLRL RRS LA AAR+VLGVLP AG+ R G+AA
Sbjct 301 LAAIKAQPQLGAQVERVGLRLGRRSALAVAARQVLGVLPPAGARRKGKAA 350
>gi|333992582|ref|YP_004525196.1| hypothetical protein JDM601_3942 [Mycobacterium sp. JDM601]
gi|333488550|gb|AEF37942.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=358
Score = 374 bits (960), Expect = 1e-101, Method: Compositional matrix adjust.
Identities = 222/342 (65%), Positives = 259/342 (76%), Gaps = 3/342 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
++ P +RDEL RVAAAVGVRV+ L SRK W+AAAA+V+D AAA RC LPRR
Sbjct 10 LVAQPAMRDELARVAAAVGVRVIQLDATSVPSRKAWTAAAAIVVDEAAAARCSAARLPRR 69
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
HV V+TG + A+W A+ VGAQ VL +P ELV ELAEAA + RD G G V+AV
Sbjct 70 AHVIVVTGAQPGPASWQGAVAVGAQRVLTLPIDGDELVAELAEAAAAVRDGGRRGEVIAV 129
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IG RGGAGASL A ALAQ A +ALLVDLDPW GGIDLL G E A GLRW DL Q GRL
Sbjct 130 IGARGGAGASLLATALAQRAGEALLVDLDPWGGGIDLLAGTENATGLRWCDLTAQTGRLT 189
Query 181 WSAVRAALPRPRGISVLSGTRRGYE---LDAGPVDAVIDAGRRGGVTVVCDLPRRLTDAT 237
W A+R ALPR RG+SVLSG RRG + ++AG VDAV++AGRRGG+TVVCDLPR LTD
Sbjct 190 WPALRDALPRQRGVSVLSGARRGQQPGDVEAGTVDAVVEAGRRGGITVVCDLPRALTDPV 249
Query 238 QAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAG 297
+ L AADLVV+VSPCDVR+CAA A +AP L A NPN+GLVVRGP+PGGLRA EVA++ G
Sbjct 250 ETVLAAADLVVVVSPCDVRSCAAGAAIAPRLRAANPNVGLVVRGPAPGGLRAVEVAEITG 309
Query 298 VPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLP 339
+PLLA++RA+PRLAE+LEH LRL RRS LA+AA RVL VLP
Sbjct 310 LPLLATLRAEPRLAERLEHAALRLHRRSALAAAAGRVLDVLP 351
>gi|342862005|ref|ZP_08718649.1| hypothetical protein MCOL_24060 [Mycobacterium colombiense CECT
3035]
gi|342130545|gb|EGT83854.1| hypothetical protein MCOL_24060 [Mycobacterium colombiense CECT
3035]
Length=357
Score = 370 bits (950), Expect = 2e-100, Method: Compositional matrix adjust.
Identities = 267/354 (76%), Positives = 298/354 (85%), Gaps = 4/354 (1%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
ML +P LR ELDRVAAA GVRVVH G PVSRKTW+AAAAVVLD AA RCGR LPRR
Sbjct 4 MLAEPDLRAELDRVAAAAGVRVVHAGDGSPVSRKTWAAAAAVVLDARAAARCGRRVLPRR 63
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
HV+VLT E TATWAAA+ VGA HVLR+P QE +LVR LAEAAES+RDDG G VAV
Sbjct 64 DHVTVLTAAEPETATWAAAVGVGAAHVLRLPGQEADLVRALAEAAESSRDDGARGHAVAV 123
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGG GGAGASL AVALAQAA DALLVDLDPW GG+DLL+GGE+APGLRWPDLALQGGRLN
Sbjct 124 IGGCGGAGASLLAVALAQAATDALLVDLDPWGGGLDLLLGGESAPGLRWPDLALQGGRLN 183
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
W AVR ALPR RG+SVLSGTRRGYELDAGPV AV+DAGRRG +V+CDLPRRLTDA QAA
Sbjct 184 WPAVRDALPRHRGVSVLSGTRRGYELDAGPVHAVVDAGRRGAASVICDLPRRLTDAAQAA 243
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
L AADLVV+VS CDVRACAA +AP L +INPN+GLVVRGPSP GLR AE+A++AG+PL
Sbjct 244 LSAADLVVVVSRCDVRACAATGALAPDLASINPNVGLVVRGPSPAGLRPAEIAEIAGLPL 303
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGS----GRHGRAA 350
LAS++AQP+LAEQ++ GGLRL RRS LA+ AR+VLGVLP AGS GR+G+AA
Sbjct 304 LASIKAQPQLAEQVDRGGLRLGRRSALATGARQVLGVLPSAGSRRRAGRNGKAA 357
>gi|336460809|gb|EGO39694.1| helicase/secretion neighborhood CpaE-like protein [Mycobacterium
avium subsp. paratuberculosis S397]
Length=371
Score = 365 bits (937), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 261/350 (75%), Positives = 294/350 (84%), Gaps = 0/350 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
ML +P LR ELDRVAAA GVRVVH G VSRKTW+AAAAVVLD AAA RCGR ALPRR
Sbjct 22 MLAEPELRAELDRVAAAAGVRVVHAGDAAAVSRKTWAAAAAVVLDAAAAARCGRWALPRR 81
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
HV+VLT E AT TWAAA+ +GA VLR+PE E +LV ELAEAAES+RDDG G VAV
Sbjct 82 DHVTVLTAAEPATTTWAAAVRIGAARVLRLPEHEADLVGELAEAAESSRDDGQRGHAVAV 141
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
+GG GGAGASL AVALAQAA DALLVDLDPW GGI+LL+GGE PGLRWPDLALQGGRLN
Sbjct 142 VGGCGGAGASLLAVALAQAAGDALLVDLDPWGGGIELLLGGENTPGLRWPDLALQGGRLN 201
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
W+AVR ALPR RG+SVLSGTRRG+E+DAGPV AV+DAGRRG V+V+CDLPRR TDA QAA
Sbjct 202 WAAVRDALPRHRGVSVLSGTRRGHEVDAGPVHAVVDAGRRGAVSVICDLPRRFTDAAQAA 261
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
L AADLVV+VS CDVRACAA +APVL A+NPN+GLVVRGPSPGGLRAAE+A + G+PL
Sbjct 262 LGAADLVVVVSRCDVRACAATGALAPVLAAVNPNVGLVVRGPSPGGLRAAEIAGITGLPL 321
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LA+++AQP+L Q+E GGLRL RRS LA AAR+VLGVLP AG+ R G+AA
Sbjct 322 LAAIKAQPQLGAQVERGGLRLGRRSALAVAARQVLGVLPPAGARRKGKAA 371
>gi|41406513|ref|NP_959349.1| hypothetical protein MAP0415 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41394862|gb|AAS02732.1| hypothetical protein MAP_0415 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=351
Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 254/351 (73%), Positives = 288/351 (83%), Gaps = 1/351 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
ML +P LR ELDRVAAA GVRVVH G VSRKTW+AAAAVVLD AAA RCGR ALPRR
Sbjct 1 MLAEPELRAELDRVAAAAGVRVVHAGDAAAVSRKTWAAAAAVVLDAAAAARCGRWALPRR 60
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
HV+VLT E AT TWAAA+ +GA VLR+PE E +LV ELAEAAES+RDDG G VAV
Sbjct 61 DHVTVLTAAEPATTTWAAAVRIGAARVLRLPEHEADLVGELAEAAESSRDDGQRGHAVAV 120
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
+GG GGAGASL AVALAQAA DALLVDLDPW GGI+LL+GGE PGLRWPDLALQGGRLN
Sbjct 121 VGGCGGAGASLLAVALAQAAGDALLVDLDPWGGGIELLLGGENTPGLRWPDLALQGGRLN 180
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLT-DATQA 239
W+AVR ALPR RG+SVLSGTRRG+E+DAGPV AV+DAGRRG V+V+CDLPRR T A A
Sbjct 181 WAAVRDALPRHRGVSVLSGTRRGHEVDAGPVHAVVDAGRRGAVSVICDLPRRFTDAAQAA 240
Query 240 ALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVP 299
A +VV+VS CDVRACAA +APVL A+NPN+GLVVRGPSPGGLRAAE+A + G+P
Sbjct 241 LGAADLVVVVVSRCDVRACAATGALAPVLAAVNPNVGLVVRGPSPGGLRAAEIAGITGLP 300
Query 300 LLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LLA+++AQP+L Q+E GGLRL RRS LA AAR+VLGVLP AG+ R G+AA
Sbjct 301 LLAAIKAQPQLGAQVERGGLRLGRRSALAVAARQVLGVLPPAGARRKGKAA 351
>gi|296166715|ref|ZP_06849139.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897885|gb|EFG77467.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=449
Score = 332 bits (852), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 266/350 (76%), Positives = 294/350 (84%), Gaps = 3/350 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
+L DP LR ELDRVAAAVGVRVVH GG SRKTWSAAAAVVLD A+ADRC R LPRR
Sbjct 103 VLADPELRRELDRVAAAVGVRVVHAGGAP--SRKTWSAAAAVVLDEASADRCARGGLPRR 160
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
THVSVLT T+ ATATWAAA+ VGA HVLR+PE+E +LVR LAEAAES+R DG G VVAV
Sbjct 161 THVSVLTPTDPATATWAAAVAVGAAHVLRLPERERDLVRALAEAAESSRGDGARGDVVAV 220
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
IGG GGAGAS AVALAQAA DALLVDLDPW GG+DLL+G E APGLRWPDLALQGGRL+
Sbjct 221 IGGCGGAGASALAVALAQAADDALLVDLDPWGGGLDLLLGAEDAPGLRWPDLALQGGRLD 280
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
W AVRAALPR RG+S LSGTRRGYE AGPV A++DAGRRG VTVVCDLPRRLT A QAA
Sbjct 281 WPAVRAALPRHRGVSALSGTRRGYEPAAGPVHAIVDAGRRGAVTVVCDLPRRLTGAAQAA 340
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
LDAADLVV+VS CDV ACAA +APVL +NPN+GLVVRGPSPGGLRAAE+AD+ G+PL
Sbjct 341 LDAADLVVVVSRCDVPACAATGALAPVLAGVNPNVGLVVRGPSPGGLRAAEIADITGLPL 400
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGRHGRAA 350
LASM+A+PR+AEQLE GGLR RRS LA+AAR+VL V+ R G R+G AA
Sbjct 401 LASMKAEPRVAEQLERGGLRPGRRSALAAAARQVLAVMAR-GPARNGGAA 449
>gi|120406369|ref|YP_956198.1| hypothetical protein Mvan_5422 [Mycobacterium vanbaalenii PYR-1]
gi|119959187|gb|ABM16192.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=365
Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 186/347 (54%), Positives = 242/347 (70%), Gaps = 8/347 (2%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
++ D L ++DRV AA GVR+V P S + W+ A+AV+LD AAA RC LPRR
Sbjct 10 LVDDRALSADIDRVVAAAGVRIVR--ATDPSSHRVWTGASAVLLDTAAAQRCAARGLPRR 67
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
V +++G W AA+ VGAQ V+ +P + EL+ ELA+A E+AR G+ G VVAV
Sbjct 68 PRVLLISGDAPGPDEWEAAVAVGAQQVVTLPSGDHELMAELADATEAARHTGLRGPVVAV 127
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
+ GRGG GAS+FA A+A+ A +ALL+D DPW GG+DL++G ET PGLRWPDL+L GGR+
Sbjct 128 LAGRGGGGASVFATAVAKVATEALLIDGDPWGGGLDLVLGSETEPGLRWPDLSLAGGRVG 187
Query 181 WSAVRAALPRPRGISVLSGTR------RGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLT 234
+SA+R ALP G+ VLSG+R ++DA + AVIDAG RGGVTVVCD+ RR T
Sbjct 188 FSALRDALPTRHGVYVLSGSRALSGTHSSNDIDAAALGAVIDAGSRGGVTVVCDVARRPT 247
Query 235 DATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVAD 294
A++ A+ +ADLVVLV+P DVR+CAAAA A + NPN G+VVRGPSPGGLR+ +VA
Sbjct 248 PASETAVASADLVVLVTPADVRSCAAAAATAQWVAGGNPNAGVVVRGPSPGGLRSVDVAR 307
Query 295 VAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRA 341
+ G+P+LASMR QP + LE GGLR+R S LA AAR VL VL ++
Sbjct 308 IVGLPVLASMRPQPGIDTLLERGGLRVRPHSPLARAAREVLAVLSQS 354
>gi|315446286|ref|YP_004079165.1| ATPase involved in chromosome partitioning [Mycobacterium sp.
Spyr1]
gi|315264589|gb|ADU01331.1| ATPase involved in chromosome partitioning [Mycobacterium sp.
Spyr1]
Length=365
Score = 298 bits (764), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 181/344 (53%), Positives = 245/344 (72%), Gaps = 8/344 (2%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
++ DP L ++RVAAA G+R+V P SR+ W+ AAAV++D AAA RC LPRR
Sbjct 10 LVEDPTLNSHVERVAAAAGLRMVRTD--DPSSRRVWTGAAAVLVDGAAARRCAARGLPRR 67
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
+ V +++ W AA+ VGAQ ++ +P ++ +L+ L++AAE+ARD G +VAV
Sbjct 68 SRVLLISAEAPGADDWEAAVAVGAQQIVTLPAEDRDLMAALSDAAEAARDPRRRGPIVAV 127
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
+ GRGG GAS+FA A+AQ+A ++LL+D DPW GG+DL++G ET PGLRWPDL+L GGR+
Sbjct 128 LAGRGGGGASVFATAVAQSATESLLIDGDPWGGGLDLVLGSETEPGLRWPDLSLAGGRVG 187
Query 181 WSAVRAALPRPRGISVLSGT------RRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLT 234
++A+R ALPR G++VLSG+ R ++D P+ AVIDAG RGGVTVVCD+ RR
Sbjct 188 YAALRDALPRRHGVAVLSGSRVLSGDRSSNDIDPAPLGAVIDAGSRGGVTVVCDVARRPG 247
Query 235 DATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVAD 294
A + A+ AADLVVLV+P D+R+CAA+A A +TA NPN G+VVRGP+PGGLR A+VA
Sbjct 248 AAAETAVAAADLVVLVTPADLRSCAASAATAQWVTAANPNTGVVVRGPAPGGLRPADVAR 307
Query 295 VAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVL 338
+ G+P+L +MR QP + LE GGLR+R RS LA AAR VL VL
Sbjct 308 IVGLPVLTAMRPQPGIESALERGGLRVRSRSPLARAAREVLSVL 351
>gi|145221975|ref|YP_001132653.1| hypothetical protein Mflv_1383 [Mycobacterium gilvum PYR-GCK]
gi|145214461|gb|ABP43865.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=365
Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 181/344 (53%), Positives = 245/344 (72%), Gaps = 8/344 (2%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
++ DP L ++RVAAA G+R+V P SR+ W+ AAAV++D AAA RC LPRR
Sbjct 10 LVEDPTLNSHVERVAAAAGLRMVRTD--DPSSRRVWTGAAAVLVDGAAARRCAARGLPRR 67
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
+ V +++ W AA+ VGAQ ++ +P ++ +L+ L++AAE+ARD G +VAV
Sbjct 68 SRVLLISADAPGADDWEAAVAVGAQQIVTLPAEDRDLMAALSDAAEAARDPRRRGPIVAV 127
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
+ GRGG GAS+FA A+AQ+A ++LL+D DPW GG+DL++G ET PGLRWPDL+L GGR+
Sbjct 128 LAGRGGGGASVFATAVAQSAPESLLIDGDPWGGGLDLVLGSETEPGLRWPDLSLAGGRVG 187
Query 181 WSAVRAALPRPRGISVLSGT------RRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLT 234
++A+R ALPR G++VLSG+ R ++D P+ AVIDAG RGGVTVVCD+ RR
Sbjct 188 YAALRDALPRRHGVAVLSGSRVLSGDRSSNDIDPAPLGAVIDAGSRGGVTVVCDVARRPG 247
Query 235 DATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVAD 294
A + A+ AADLVVLV+P D+R+CAA+A A +TA NPN G+VVRGP+PGGLR A+VA
Sbjct 248 AAAETAVAAADLVVLVTPADLRSCAASAATAQWVTAANPNTGVVVRGPAPGGLRPADVAR 307
Query 295 VAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVL 338
+ G+P+L +MR QP + LE GGLR+R RS LA AAR VL VL
Sbjct 308 IVGLPVLTAMRPQPGIESALERGGLRVRARSPLARAAREVLSVL 351
>gi|254822026|ref|ZP_05227027.1| hypothetical protein MintA_18982 [Mycobacterium intracellulare
ATCC 13950]
Length=207
Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 154/196 (79%), Positives = 173/196 (89%), Gaps = 0/196 (0%)
Query 144 LLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGTRRG 203
+LVDLDPW GGI+LL+GGE APGLRWPDLALQ GRL WSAVR ALPR RGISVLSGTRRG
Sbjct 1 MLVDLDPWGGGIELLLGGENAPGLRWPDLALQAGRLTWSAVRDALPRHRGISVLSGTRRG 60
Query 204 YELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAAT 263
YE+DAGPV A+++AGRRG VTV+CDLPRR TDATQAAL AADLVV+VS CDVRACAA
Sbjct 61 YEVDAGPVHAIVEAGRRGAVTVICDLPRRFTDATQAALSAADLVVVVSRCDVRACAATTA 120
Query 264 MAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRR 323
MAPVL A NPN+GLVVRGPSPGGLRA E+A++AG+PLLA+++AQP+L EQ+E GGLR RR
Sbjct 121 MAPVLAATNPNVGLVVRGPSPGGLRAVEIAEIAGLPLLAAIKAQPQLGEQVERGGLRYRR 180
Query 324 RSVLASAARRVLGVLP 339
RS LA AAR VLGVLP
Sbjct 181 RSALAVAAREVLGVLP 196
>gi|118472134|ref|YP_890391.1| hypothetical protein MSMEG_6171 [Mycobacterium smegmatis str.
MC2 155]
gi|118173421|gb|ABK74317.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=316
Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 189/309 (62%), Positives = 223/309 (73%), Gaps = 3/309 (0%)
Query 30 PVSRKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHVLR 89
P SRK W +AAAV+LD +AA RC LPRR V V+ E A W AAI VGAQHV+
Sbjct 2 PSSRKAWLSAAAVLLDASAARRCADRGLPRRDRVLVIGCDEPGPADWQAAIAVGAQHVVT 61
Query 90 MPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAADALLVDLD 149
+P Q+ +LV L+ E G G VVAV+ +GGAGAS+FA ALA +A ALLVD D
Sbjct 62 LPRQDTDLVAALSVVDEGG---GHRGPVVAVVAAKGGAGASVFAAALALSAPGALLVDAD 118
Query 150 PWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGTRRGYELDAG 209
PW+GGIDL++G E PGLRW DLALQGGRL + A+R ALPR ISVLSG R G ++ A
Sbjct 119 PWSGGIDLVLGSEDQPGLRWADLALQGGRLGYGALRDALPRRGEISVLSGGRAGVDITAA 178
Query 210 PVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLT 269
+ AVIDAG RG VVCD+PRR TDA +AAL+AADLVV+V+ DVR+CAAAA +
Sbjct 179 ALHAVIDAGCRGATLVVCDVPRRSTDAAEAALEAADLVVVVARADVRSCAAAAAAGSWIA 238
Query 270 AINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLAS 329
NPN+G+VVRGP+PGGLRAAEVAD+ +PLLASMR QP L E LE GGLRL RRS LA+
Sbjct 239 TCNPNIGVVVRGPAPGGLRAAEVADIVDLPLLASMRPQPGLDEALERGGLRLTRRSPLAT 298
Query 330 AARRVLGVL 338
AARRVLGVL
Sbjct 299 AARRVLGVL 307
>gi|108801769|ref|YP_641966.1| hypothetical protein Mmcs_4806 [Mycobacterium sp. MCS]
gi|119870920|ref|YP_940872.1| hypothetical protein Mkms_4892 [Mycobacterium sp. KMS]
gi|108772188|gb|ABG10910.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119697009|gb|ABL94082.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=353
Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 204/340 (60%), Positives = 250/340 (74%), Gaps = 2/340 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
+L+ P LRD++DRVAAA V VVH P SRK W+AAAA++LD AA RC ALPRR
Sbjct 9 LLSGPTLRDDVDRVAAAAAVVVVHA--AEPSSRKAWTAAAAILLDGQAARRCAAQALPRR 66
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
V ++ W AAI VGAQ VL +PEQEG+LV LA+AAES RDD G V AV
Sbjct 67 DRVVLIGQAPLGEEQWHAAIAVGAQRVLTLPEQEGDLVVLLADAAESVRDDVRRGPVAAV 126
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
+ GRGGAGAS+ A ALA + DALLVD+DPW+GG+DLL+G ET GLRWPDLAL+ GR+
Sbjct 127 VAGRGGAGASVLAAALALSVTDALLVDVDPWSGGLDLLLGVETTAGLRWPDLALRAGRVG 186
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
+ A+R ALPR G+++L+ R G E+D + AV++AG RGG TV+CD+PRR T A + A
Sbjct 187 YPALRDALPRHGGVTLLANGRGGGEIDPTALAAVVEAGSRGGATVICDVPRRSTAAAENA 246
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
LDAADLV++V +VRACAAA M P L+AINPN+GLVVRGP+PGGLRAAEVA G+PL
Sbjct 247 LDAADLVIMVVTAEVRACAAAGAMVPWLSAINPNVGLVVRGPAPGGLRAAEVAASVGLPL 306
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPR 340
LA+MR QP +A LE GGLR+ RR+ LA+AARRVL VL R
Sbjct 307 LAAMRPQPGVAAALERGGLRIARRAPLAAAARRVLDVLQR 346
>gi|126437757|ref|YP_001073448.1| hypothetical protein Mjls_5193 [Mycobacterium sp. JLS]
gi|126237557|gb|ABO00958.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=353
Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 204/340 (60%), Positives = 250/340 (74%), Gaps = 2/340 (0%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
+L+ P LRD++DRVAAA V VVH P SRK W+AAAA++LD AA RC ALPRR
Sbjct 9 LLSGPTLRDDVDRVAAAAAVVVVHA--AEPSSRKAWTAAAAILLDDQAARRCAAQALPRR 66
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
V ++ W AAI VGAQ V+ +PEQE +LV LA+AAES RDD G V AV
Sbjct 67 DRVVLVGQAPLGEEQWHAAIAVGAQRVMALPEQESDLVVLLADAAESVRDDVRRGPVAAV 126
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
+ GRGGAGAS+ A ALA + DALLVD+DPW+GG+DLL+G ET GLRWPDLAL+ GR+
Sbjct 127 VAGRGGAGASVLAAALALSVTDALLVDVDPWSGGLDLLLGVETTAGLRWPDLALRAGRVG 186
Query 181 WSAVRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAA 240
+ A+R ALPR G+++L+ R G E+D + AV++AG RGG TVVCD+PRR T A + A
Sbjct 187 YPALRDALPRRGGVTLLANGRGGGEIDPTALAAVVEAGSRGGTTVVCDVPRRSTAAAENA 246
Query 241 LDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPL 300
LDAADLV++V +VRACAAA M P L+AINPN+GLVVRGP+PGGLRAAEVA G+PL
Sbjct 247 LDAADLVIMVVTAEVRACAAAGAMVPWLSAINPNVGLVVRGPAPGGLRAAEVAASVGLPL 306
Query 301 LASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPR 340
LA+MR QP +AE LE GGLR+ RR+ LA+AARRVL VL R
Sbjct 307 LAAMRPQPGVAEALERGGLRVARRAPLAAAARRVLEVLQR 346
>gi|169627536|ref|YP_001701185.1| hypothetical protein MAB_0432 [Mycobacterium abscessus ATCC 19977]
gi|169239503|emb|CAM60531.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=357
Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 156/340 (46%), Positives = 214/340 (63%), Gaps = 1/340 (0%)
Query 4 DPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRRTHV 63
D L +E++R+ AA G +V +SR+ W+ A AVVLD A LPRR+ V
Sbjct 15 DRQLSNEIERIVAAAGKPLVLATDAGSISRQAWTRAGAVVLDGADTSMAALAQLPRRSRV 74
Query 64 SVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAVIGG 123
++ E W A+ VGA+ VL +PE E LV L+ A S G +V V G
Sbjct 75 LLICRDEPTNEVWRRAVEVGAEQVLALPEDEATLVAALS-AMPSTASAGRAPVIVVVGGC 133
Query 124 RGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSA 183
G + L A +A + A++VD DP+ GG+DLL+G E PGLRWPD+ ++GGR+++ A
Sbjct 134 GGAGASVLCAAIGLRAPSGAMIVDADPYGGGMDLLLGWEDIPGLRWPDVDMRGGRVSFDA 193
Query 184 VRAALPRPRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDA 243
+R ALP RG+ VLSG R G + + VID+ R GV VV DLPRRL + AAL+
Sbjct 194 LRRALPHRRGLVVLSGDRTGGGGNVETIAGVIDSAREAGVAVVVDLPRRLGASGVAALER 253
Query 244 ADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLAS 303
ADLVV+V+ +VRACAA+A +A + NPN+G+VVRGP+P GLRA EVA++ GVPL+A+
Sbjct 254 ADLVVVVTTAEVRACAASALVARAVRTTNPNVGVVVRGPAPSGLRAPEVAEIVGVPLIAA 313
Query 304 MRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGS 343
MR +P LA +L+ GGLRL RRS LA+AA+ VL ++ + G
Sbjct 314 MRPEPNLASRLDKGGLRLSRRSPLAAAAQSVLSLVSQDGK 353
>gi|157144133|dbj|BAF80050.1| smmB [Rhodococcus rhodochrous]
Length=356
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 158/342 (47%), Positives = 201/342 (59%), Gaps = 13/342 (3%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
++ DP L +L RV AA R +H PV R+ W+ A VVLD AAA C PRR
Sbjct 7 LVDDPALIADLRRVVAAAD-RTLH-EMSVPVPRRAWTDAPIVVLDAAAAVSCAG-GYPRR 63
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
V ++ A W AA TVGA+HVL +P +E EL+ +A A E + G+ V+A+
Sbjct 64 PGVILVCSGTADLTEWQAAATVGAEHVLALPSEEVELLSIIAAAGEPSSGAGV---VLAI 120
Query 121 IGGRGGAGASLFAVALAQAAA-----DALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQ 175
+GG GGAGAS FA ALA AA D LLVD DP+ G+D+L G E PG+RW L +
Sbjct 121 VGGCGGAGASTFAAALAWAAGHDERRDTLLVDADPFGAGLDVLTGLEEHPGVRWSGLTVD 180
Query 176 GGRLNWSAVRAALPR-PRGISVLSGTRRGYE-LDAGPVDAVIDAGRRGGVTVVCDLPRRL 233
GGR++ A+R A+P G+ VLS R E L AG +V++A R G TVVCD+ R
Sbjct 181 GGRISARALRDAVPVWSSGVGVLSTDRENNERLTAGATGSVVEAARGAGTTVVCDVGRSF 240
Query 234 TDATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVA 293
A + ADL VLV P + A +AA +A L A G+VVRGP+PGGLRA +VA
Sbjct 241 DPVADAVITLADLTVLVVPARIGAVLSAARVARTLAARGEPAGVVVRGPAPGGLRAVDVA 300
Query 294 DVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVL 335
D G+ +L SMR +P L E+LE GGLRLR RS L AA VL
Sbjct 301 DAVGLDVLTSMRPEPGLTERLERGGLRLRPRSPLLGAAHDVL 342
>gi|343926483|ref|ZP_08765988.1| hypothetical protein GOALK_060_01470 [Gordonia alkanivorans NBRC
16433]
gi|343763721|dbj|GAA12914.1| hypothetical protein GOALK_060_01470 [Gordonia alkanivorans NBRC
16433]
Length=372
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 156/353 (45%), Positives = 197/353 (56%), Gaps = 17/353 (4%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
+L DP L D++ R AAA G R V R R+ W + AVV D AA + PRR
Sbjct 27 VLVDPDLYDDVARCAAAAGYRTV--AARPDDCRREWLTSRAVVADPAAIAVLTLIHPPRR 84
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
+ +++ E TW A+ +GA +P E LVR L + R V+AV
Sbjct 85 DGLILVSAEEPRADTWRMAMDLGATDAAALPSDENRLVRSLTDVRVPRRRPA---GVLAV 141
Query 121 IGGRGGAGASLFAVALAQAA----ADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQG 176
IG GGAGAS A A+A + + LL+DLD A G DLL+G E PGLRW DL+L G
Sbjct 142 IGAHGGAGASTLAAAVALTSVGNGSSTLLLDLDDVAPGTDLLLGIEQRPGLRWQDLSLDG 201
Query 177 GRLNWSAVRAALPRP-RGISVLSGTR---RGYELDAGPVDAVIDAGRRGGVTVVCDLPRR 232
G + +A+ ALPR G++VL+ R R DA V AVIDAG+ G VV DLPR
Sbjct 202 GVVGGTALHHALPRAGSGLAVLTSERLPTRAPGSDA--VAAVIDAGQAHGDLVVVDLPRA 259
Query 233 LTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEV 292
T + A+ +ADLVVLVS V CAAA + L ++ LVVRGPSPGGLR A+V
Sbjct 260 DTPVVRTAIASADLVVLVSAPSVGGCAAARRVVGRLIGDEVSVELVVRGPSPGGLRPAQV 319
Query 293 ADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVLPRAGSGR 345
AD GVPL+A+ R PRL +LE G LR+R RS L AA+ V + AG GR
Sbjct 320 ADAIGVPLIAAYRPDPRLPVRLEGGPLRVRPRSPLGRAAQAVHSRV--AGQGR 370
>gi|229494816|ref|ZP_04388572.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229318312|gb|EEN84177.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=364
Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 147/340 (44%), Positives = 198/340 (59%), Gaps = 11/340 (3%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
++ D + + RVAAAV R+ HPVSR+ W+ A+AVVLD +AA R P+R
Sbjct 17 LVDDAKILASVRRVAAAVDRRLDE--AEHPVSRQQWNRASAVVLDASAA-RDALARSPKR 73
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
T V ++ W +A +GA VL +PE+E LV LA+ + + D + V
Sbjct 74 TRVFLVCDGTPTVDDWKSATAIGADSVLSLPEEENALVAVLADHVDVSGDGTVVSVVGGC 133
Query 121 IGGRGGAGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLN 180
GG A A+ A+ A LLVD+D G D+L+G ETAPGLRW L ++GGRL+
Sbjct 134 GGGGASATAAAVALTSAARHVPTLLVDVDALGSGADVLLGIETAPGLRWGALTVEGGRLS 193
Query 181 WSAVRAALP-RPRGISVLSGTRRGYELDAGP----VDAVIDAGRRGGVTVVCDLPRRLTD 235
A+R ALP + + + VL+ +RR E+D GP V AV+DAGR G VVCD+PR ++
Sbjct 194 PDALRDALPAKGKFLRVLASSRR--EID-GPTVTAVRAVLDAGRSSGGLVVCDVPRHPSE 250
Query 236 ATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADV 295
QA L+ +D V++V P V AC AA + + N N+GLVVRGP+PGGLR A+VAD+
Sbjct 251 VGQAVLEMSDSVLVVVPATVAACVAAEKVGAWVVRHNSNVGLVVRGPAPGGLRGADVADM 310
Query 296 AGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVL 335
G+PL A MR LA LE GGL L R L+ AA VL
Sbjct 311 LGLPLTAVMRGHRSLAPMLERGGLELTRGCPLSVAATAVL 350
>gi|226303992|ref|YP_002763950.1| hypothetical protein RER_05030 [Rhodococcus erythropolis PR4]
gi|226183107|dbj|BAH31211.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=364
Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 139/313 (45%), Positives = 185/313 (60%), Gaps = 9/313 (2%)
Query 28 RHPVSRKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHV 87
HPVSR+ W+ A+AVVLD +AA R P+RT V ++ W +A +GA V
Sbjct 42 EHPVSRQQWNRASAVVLDASAA-RDALTRSPKRTRVFLVCDGTPTVDDWKSATAIGADSV 100
Query 88 LRMPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAADALLVD 147
L +PE+E LV LA+ + + D + V GG A A+ A+ A LLVD
Sbjct 101 LSLPEEENALVAVLADHVDVSGDGTVVSVVGGCGGGGASATAAAVALTSAARHVPTLLVD 160
Query 148 LDPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALP-RPRGISVLSGTRRGYEL 206
+D G D+L+G ET PGLRW L ++GGRL A+R ALP + + + VL+ +RR E+
Sbjct 161 VDALGSGADVLLGIETTPGLRWGALTVEGGRLAPDALRDALPAKGKFLRVLASSRR--EI 218
Query 207 DAGP----VDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAA 262
D GP V AV+DAGR G VVCD+PR ++ QAAL+ +DLV++V P V AC AA
Sbjct 219 D-GPTVTAVRAVLDAGRSSGGLVVCDVPRHPSEVGQAALEMSDLVLVVVPATVAACVAAE 277
Query 263 TMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLR 322
+ + N N+GLVVRGP+PGGLR A+VAD+ G+PL A MR LA LE GGL L
Sbjct 278 KVGAWVVRHNSNVGLVVRGPAPGGLRGADVADMLGLPLTAVMRGHRSLAPMLERGGLELT 337
Query 323 RRSVLASAARRVL 335
R L++ A VL
Sbjct 338 RGCPLSAVATAVL 350
>gi|296394992|ref|YP_003659876.1| hypothetical protein Srot_2610 [Segniliparus rotundus DSM 44985]
gi|296182139|gb|ADG99045.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=380
Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 144/345 (42%), Positives = 193/345 (56%), Gaps = 15/345 (4%)
Query 2 LTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRRT 61
+ DP L + + V AA G +V + R+ W +A V+LD A C L R
Sbjct 32 IADPVLMEHVRHVVAASGRGLVESPPQR--DRRVWRSAGMVLLDEQTARACAGERLARDG 89
Query 62 HVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAVI 121
+++ A+ A W A+ V A HVL +PEQE +LVR + EA E R G G ++AVI
Sbjct 90 ATALVCTGPASPAAWQLAVRVKADHVLALPEQERDLVRVVGEAVE--RRVG-AGRIIAVI 146
Query 122 GGRGGAGASLFAVALA----QAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGG 177
G RGGAG S A A ++ +L VDLDP GG+D+++G E PGLRW DLAL GG
Sbjct 147 GARGGAGVSTLVAATALVAARSGLRSLAVDLDPLGGGLDVVLGMEREPGLRWGDLALVGG 206
Query 178 RLNWSAVRAALP-RPRGISVLSGTRRGYELDAGPVD-----AVIDAGRRGGVTVVCDLPR 231
R++ +A+ ALP R +SVL G ++ AV+D+ R G VV DLPR
Sbjct 207 RVSAAALHEALPSRSGNLSVLGAGSADLSAPRGAIEPEAALAVLDSTRSAGDAVVVDLPR 266
Query 232 RLTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAE 291
D QA + AD +LV P ++RA AA ++A L ++G VVRGPSPGGLR +
Sbjct 267 HWGDLQQAVVATADSTILVLPAELRAIAAGRSLALALCRECASVGAVVRGPSPGGLRLSR 326
Query 292 VADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLG 336
A+ AGVPL+A+M +P +A LE GL LR RS + AA VLG
Sbjct 327 AAEHAGVPLIATMHDEPPIALSLERHGLVLRARSSVLRAAAAVLG 371
>gi|331694290|ref|YP_004330529.1| helicase/secretion neighborhood CpaE-like protein [Pseudonocardia
dioxanivorans CB1190]
gi|326948979|gb|AEA22676.1| helicase/secretion neighborhood CpaE-like protein [Pseudonocardia
dioxanivorans CB1190]
Length=359
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 148/323 (46%), Positives = 190/323 (59%), Gaps = 11/323 (3%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
M+ DP L D + R+AAA G V H +R+ W+AA+ VV+D AAA+RC R PRR
Sbjct 9 MVDDPDLLDAVLRLAAAAGAEV-HRAIDPTDARRQWAAASMVVVDVAAAERCARFPFPRR 67
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
+ ++T W + GA +++ +PE E +V EA E G GAV+AV
Sbjct 68 DGIVLVTAGTPPPHAWQLGLRAGAANIVELPEGELWMVTAFTEACEGG---GPPGAVLAV 124
Query 121 IGGRGGAGASLFAVALAQAAAD----ALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQG 176
GG GGAGAS A A+A AA LL+D DP GG+DLL+G E G+RWP+L++
Sbjct 125 TGGCGGAGASTLAAAVALRAARDGRRTLLLDCDPLGGGLDLLLGAEDVLGVRWPELSVMD 184
Query 177 GRLNWSAVRAALPR--PRGISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLT 234
GR+ +A+ ALP R +SVLS R G A + AVIDAGRR G TVVCD+PR+ T
Sbjct 185 GRVPAAALHEALPAMGDRTLSVLSCDRTGPGPGAAGLRAVIDAGRRAGDTVVCDVPRQPT 244
Query 235 DATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVAD 294
+A AL ADL VLV P DVRACAAA+ + VL +GLVVRGPS G+ +VA
Sbjct 245 EAGATALARADLTVLVVPADVRACAAASRVTAVLAEHACAVGLVVRGPS-QGITPDDVAR 303
Query 295 VAGVPLLASMRAQPRLAEQLEHG 317
VPLL +MR Q L +LE G
Sbjct 304 TLDVPLLVAMRTQNDLDRRLERG 326
>gi|296141577|ref|YP_003648820.1| hypothetical protein Tpau_3909 [Tsukamurella paurometabola DSM
20162]
gi|296029711|gb|ADG80481.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=355
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 157/316 (50%), Positives = 191/316 (61%), Gaps = 20/316 (6%)
Query 33 RKTWSAAAAVVLD------HAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQH 86
R W++A+ +VLD A A R G LPRR V+ L T A +AA+ VGA
Sbjct 39 RAAWASASGLVLDLESARVMADAARAG--GLPRREGVA-LVATRAGLPELSAAVDVGASQ 95
Query 87 VLRMPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAA----D 142
V +PEQ EL R LA DDG VVAV+GG GGAGAS+ A A+A AA
Sbjct 96 VFELPEQVRELARFLAAREP---DDGARSRVVAVLGGHGGAGASVLAAAVAVAAPGRGIT 152
Query 143 ALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALP-RPRGISVLSGT- 200
AL VD DPW GGIDLL+G PGLRW DLAL+GG L A+ AALP R ++VLS +
Sbjct 153 ALAVDADPWGGGIDLLLGCADLPGLRWGDLALRGGHLPSEALVAALPGRADAVAVLSASG 212
Query 201 RRGYELDAGPVDAVIDAGRRG-GVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACA 259
E+ + + AV+DAGRR G+TVV DLPRR A A LD AD+V+LV VR CA
Sbjct 213 ATAPEIPSEALLAVLDAGRRSVGITVV-DLPRRADPAVTACLDVADVVLLVCAATVRGCA 271
Query 260 AAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGL 319
AA +++ + + LVVRGPSPGGL A +V G+PLL SMR QP L QL+ GL
Sbjct 272 AARSLSDGVLRRARSARLVVRGPSPGGLSARDVERAVGLPLLTSMRPQPGLDAQLDGNGL 331
Query 320 RLRRRSVLASAARRVL 335
RLR+ S LA+AA RVL
Sbjct 332 RLRKGSPLAAAAGRVL 347
>gi|258650975|ref|YP_003200131.1| hypothetical protein Namu_0728 [Nakamurella multipartita DSM
44233]
gi|258554200|gb|ACV77142.1| hypothetical protein Namu_0728 [Nakamurella multipartita DSM
44233]
Length=359
Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 152/347 (44%), Positives = 192/347 (56%), Gaps = 15/347 (4%)
Query 4 DPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRRTHV 63
D GL DE+ R+AAA GV + H R P SR W A ++LD A RR +
Sbjct 16 DEGLLDEVLRIAAAAGVEMAHC--REPTSRTLWRTAPVILLDAAQVRAAAEARPARRPGI 73
Query 64 SVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAVIGG 123
V+ + A W + +G L + E EL+ LA++ DG C VAV+G
Sbjct 74 VVIVDADPPEAMWELCVRLGVDRTLHVHRDEVELIELLADSVRDGPADGRC---VAVVGA 130
Query 124 RGGAGASLFAVALA----QAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRL 179
GGAGAS+FA A+A ++ ALL+D DPW G+D+++G E +PGLRW DL+ GRL
Sbjct 131 CGGAGASVFAGAVAFAGARSGRPALLLDCDPWGAGLDVILGVEHSPGLRWSDLSATAGRL 190
Query 180 NWSAVRAALPR----PRGISVLSGTRR-GYELDAGPVDAVIDAGRRGGVTVVCDLPRRLT 234
+ ALPR P GISVL+ R ++LD VD VIDAGRR G V DLPR
Sbjct 191 PVGELVRALPRIRLGPAGISVLAHDRETVHDLDPDVVDVVIDAGRRSGAVTVVDLPRPPG 250
Query 235 DATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVAD 294
A L+ DLVVLV P DVR C AA + L+ + +GLVVRGPSP G+ A +VA
Sbjct 251 PAADRVLERCDLVVLVVPADVRGCWAADRICRRLSGFDVAVGLVVRGPSPCGIGADDVAG 310
Query 295 VAGVPLLASMRAQPRLAEQLEHG-GLRLRRRSVLASAARRVLGVLPR 340
G+PLLA MRA+ LA +LE G L R L AARRVL L R
Sbjct 311 SLGLPLLAQMRAESGLANELEFGLSLASGGRRPLLKAARRVLAELDR 357
>gi|111021315|ref|YP_704287.1| hypothetical protein RHA1_ro04339 [Rhodococcus jostii RHA1]
gi|110820845|gb|ABG96129.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=393
Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 140/310 (46%), Positives = 179/310 (58%), Gaps = 9/310 (2%)
Query 32 SRKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHVLRMP 91
+R W +A +VLD AA C RR V + G W A VGA+HVL +P
Sbjct 73 ARHVWGSAPIIVLDARAAAACRNRLPRRRRVVLLCDGP-PGIDEWRIATAVGAEHVLAVP 131
Query 92 EQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAAD-ALLVDLDP 150
E E LV L E + DG AVV GG G + + A + ALL+D D
Sbjct 132 EDESALVAVLGEQPQRPDADGTVVAVVGGCGGAGASTLAAATALTAASRPQPALLLDTDS 191
Query 151 WAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALP-RPRGISVLSGTRRGYELDAG 209
W G+D+L+G E PGLRW L+++GGR++ A+R ALP R + VL+ +R G+ AG
Sbjct 192 WGSGLDVLLGIEDVPGLRWSGLSIEGGRISSGALRDALPARGERLRVLACSRTGH--GAG 249
Query 210 PVDA----VIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMA 265
P +A V DAGR G VVCD+ R T+ L+ ADLVVLV P VRAC AA ++
Sbjct 250 PTEAAVRAVTDAGRHAGDLVVCDVSRFPGPVTETVLELADLVVLVVPATVRACIAAGKVS 309
Query 266 PVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRS 325
+T NPN GLVVRGP+PGGLR A++A+V +PL+ASMRA+ L LEHGGLR RRS
Sbjct 310 QWITERNPNQGLVVRGPAPGGLRGADIAEVLDLPLIASMRAERALTGMLEHGGLRPGRRS 369
Query 326 VLASAARRVL 335
L +AA VL
Sbjct 370 PLGAAAEAVL 379
>gi|226363659|ref|YP_002781441.1| hypothetical protein ROP_42490 [Rhodococcus opacus B4]
gi|226242148|dbj|BAH52496.1| hypothetical protein [Rhodococcus opacus B4]
Length=361
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 140/310 (46%), Positives = 179/310 (58%), Gaps = 9/310 (2%)
Query 32 SRKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHVLRMP 91
+R +W +A VVLD AA C RR V + G W A VGA+HVL +P
Sbjct 41 ARHSWGSAPIVVLDARAAAACRNRLPRRRRVVLLCDGPPGID-EWRIATAVGAEHVLAVP 99
Query 92 EQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAAD-ALLVDLDP 150
+ E LV L E + DG AVV GG G + + A LL+D D
Sbjct 100 DDESALVAVLGEQPQRPEADGTVVAVVGGCGGAGASTLAAATALTAATRPQPTLLLDTDS 159
Query 151 WAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALP-RPRGISVLSGTRRGYELDAG 209
W G+DLL+G E PGLRW L+++GGR++ +A+R ALP R + VL+ +R G+ AG
Sbjct 160 WGSGLDLLLGIEDVPGLRWSGLSIEGGRISSAALRDALPARGEHLRVLACSRTGH--GAG 217
Query 210 P----VDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMA 265
P V AV DAGR G VVCD+ R +A ++ ADLVVLV P VRAC AA ++
Sbjct 218 PTAAAVRAVTDAGRHAGDLVVCDVSRFPGPVAEAVVELADLVVLVVPATVRACIAAGKVS 277
Query 266 PVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRS 325
+T NPN GLVVRGP+PGGLR A+VA+V +PL+ASMRA+ + LEHGGLR RRS
Sbjct 278 HWITERNPNQGLVVRGPAPGGLRGADVAEVLDLPLIASMRAERAITGMLEHGGLRPGRRS 337
Query 326 VLASAARRVL 335
L +AA VL
Sbjct 338 PLGAAAEAVL 347
>gi|325675228|ref|ZP_08154913.1| hypothetical protein HMPREF0724_12695 [Rhodococcus equi ATCC
33707]
gi|325553934|gb|EGD23611.1| hypothetical protein HMPREF0724_12695 [Rhodococcus equi ATCC
33707]
Length=372
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 147/327 (45%), Positives = 189/327 (58%), Gaps = 18/327 (5%)
Query 30 PVSRKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHVLR 89
PV R W +A VVLD AAA C LPRR V ++ A W AA VGA VL
Sbjct 46 PVGRSVWMSADLVVLDAAAAREC-AAGLPRRDRVVIVCSGVPGIADWQAAAEVGADRVLG 104
Query 90 MPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQA---------A 140
+P E LV A+ + R+ G GAVV+V+ G GGAGAS A A+A A A
Sbjct 105 LPADEDVLVAVFADR-NTRREAG--GAVVSVVAGSGGAGASTMAAAIALAGARARKTDRA 161
Query 141 ADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGT 200
LL+D DP G+DLL+G E APGLRW LA++GGR+ A+ AALP G+SVL+
Sbjct 162 PGVLLLDADPLGSGLDLLLGVERAPGLRWSGLAVEGGRVLADALHAALPAQAGVSVLACD 221
Query 201 R--RGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRAC 258
R R L AV++AGRR G VVCD+ R + ++ ++ +DLVV+V P VR
Sbjct 222 RDSRTGGLTPAAATAVVEAGRRAGCLVVCDVARHPGEVGESVVELSDLVVVVVPATVRGG 281
Query 259 AAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGG 318
A+ + +T NP+ G+VVRGP+PGGLR ++A+ P++A MR PRL LE GG
Sbjct 282 VASGRVLSWITQRNPHRGIVVRGPAPGGLRGTDLAETLDAPVIAVMRPAPRLDAMLERGG 341
Query 319 LRLRRRSVLASAARRVLGVL---PRAG 342
L RS LA+AAR VL VL PR+G
Sbjct 342 LDPGERSPLAAAARSVLDVLAARPRSG 368
>gi|312138009|ref|YP_004005345.1| membrane protein [Rhodococcus equi 103S]
gi|311887348|emb|CBH46659.1| putative membrane protein [Rhodococcus equi 103S]
Length=372
Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 147/327 (45%), Positives = 189/327 (58%), Gaps = 18/327 (5%)
Query 30 PVSRKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHVLR 89
PV R W +A VVLD AAA C LPRR V ++ A W AA VGA VL
Sbjct 46 PVGRSVWMSADLVVLDAAAAREC-AAGLPRRDRVVIVCSGVPGIADWQAAAEVGADRVLG 104
Query 90 MPEQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQA---------A 140
+P E LV A+ + R+ G GAVV+V+ G GGAGAS A A+A A A
Sbjct 105 LPADEDVLVAVFADR-NTRREAG--GAVVSVVAGSGGAGASTMAAAIALAGARARKTDRA 161
Query 141 ADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGT 200
LL+D DP G+DLL+G E APGLRW LA++GGR+ A+ AALP G+SVL+
Sbjct 162 PGVLLLDADPLGSGLDLLLGVERAPGLRWSGLAVEGGRVLADALHAALPAQAGVSVLACD 221
Query 201 R--RGYELDAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRAC 258
R R L AV++AGRR G VVCD+ R + ++ ++ +DLVV+V P VR
Sbjct 222 RDSRMGGLTPAAATAVVEAGRRAGCLVVCDVARHPGEVGESVVELSDLVVVVVPATVRGG 281
Query 259 AAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGG 318
A+ + +T NP+ G+VVRGP+PGGLR ++A+ P++A MR PRL LE GG
Sbjct 282 VASGRVLSWITQRNPHRGIVVRGPAPGGLRGTDLAETLDAPVIAVMRPAPRLDAMLERGG 341
Query 319 LRLRRRSVLASAARRVLGVL---PRAG 342
L RS LA+AAR VL VL PR+G
Sbjct 342 LDPGERSPLAAAARSVLDVLAARPRSG 368
>gi|262200532|ref|YP_003271740.1| hypothetical protein Gbro_0517 [Gordonia bronchialis DSM 43247]
gi|262083879|gb|ACY19847.1| hypothetical protein Gbro_0517 [Gordonia bronchialis DSM 43247]
Length=352
Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 144/339 (43%), Positives = 190/339 (57%), Gaps = 18/339 (5%)
Query 2 LTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRRT 61
L P L D+ R AAA G R++ R+ W + AV++D AA D PRR
Sbjct 8 LVGPDLLDDAARCAAAAGYRMIVADAAD--CRRAWLTSRAVLVDPAALDLLTAARPPRRD 65
Query 62 HVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAVI 121
V ++TG E +W A+ +GA VL +P +G LVR L+E R VA++
Sbjct 66 GVILVTGGEPPPRSWRLALDLGAADVLTLPGDDGRLVRLLSELRAPRRSPA---GAVALM 122
Query 122 GGRGGAGASLFAVAL----AQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGG 177
GGAGAS+ AVA+ A+AA LL+DLD G DLL+G E GLRW DL+L+GG
Sbjct 123 SAHGGAGASVLAVAVGLTAARAATRTLLLDLDDLGPGADLLLGIEDRSGLRWGDLSLEGG 182
Query 178 RLNWSAVRAALPRPRGISVLSGTR----RGYELDAGPVDAVIDAGRRGGVTVVCDLPRRL 233
+ A+ ALP+ + + +R R DA V AVIDAGR G VV DLPR
Sbjct 183 VVVGGALHHALPKAEEMLSVLASRGDDPRPPRADA--VTAVIDAGRGNGDLVVIDLPRTE 240
Query 234 TDATQAALDAADLVVLVSPCDVRACAAAA-TMAPVLTAINPNLGLVVRGPSPGGLRAAEV 292
T+AA+++ DLVVLV+ V CAAA T+ +L + + L +RGPSPGGLRA +V
Sbjct 241 GAVTRAAIESVDLVVLVTTPTVLGCAAARRTVGRLLDGVR--VELCIRGPSPGGLRAGQV 298
Query 293 ADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAA 331
AD G+PLLAS R PR+A +LE G R+ R+ L AA
Sbjct 299 ADAVGLPLLASYRPDPRMAARLESGRPRVTPRNPLGRAA 337
>gi|257057543|ref|YP_003135375.1| hypothetical protein Svir_35930 [Saccharomonospora viridis DSM
43017]
gi|256587415|gb|ACU98548.1| hypothetical protein Svir_35930 [Saccharomonospora viridis DSM
43017]
Length=364
Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 127/332 (39%), Positives = 181/332 (55%), Gaps = 15/332 (4%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
++TD +R+ + R+AAAVG + H+ +R WS A V++DH + +PRR
Sbjct 25 LMTDDTVREHVVRLAAAVGCELHHVTD-SAAARPRWSDAPLVLIDHVP----DVIDVPRR 79
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
+ V ++ W AA+ +G V +P E +V LA+ AE D G V+AV
Sbjct 80 SGVLLVRTDTPTPEQWKAAVALGVDGVAVLPADEDVVVTALADVAEKPSDRE--GRVLAV 137
Query 121 IGGRGGAGASLFAVALAQAAAD----ALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQG 176
IGGRGGAGAS+ A ++ AAA ALLVD DP GG+DL++G E GLRW D+ +
Sbjct 138 IGGRGGAGASVLAASVGLAAARSGGAALLVDCDPLGGGLDLVLGAEADEGLRWSDVRVSS 197
Query 177 GRLNWSAVRAALP-RPRG---ISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRR 232
GR++ + + A LP R RG +S+LS R G + AV+DAGRR G TVVCD+PR
Sbjct 198 GRVSMAELDAVLPFRRRGRGRMSILSCDRTGPGPTEAALAAVVDAGRRAGRTVVCDVPRH 257
Query 233 LTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEV 292
+ A L ADL VLV P DVR C +AA + L+ + +VVR + L A+V
Sbjct 258 PSPAADEVLRRADLAVLVVPADVRGCVSAARVRHRLSERIARIAVVVRASAATSLSEADV 317
Query 293 ADVAGVPLLASMRAQPRLAEQLEHGGLRLRRR 324
+ G P+L +R + + ++ G RR
Sbjct 318 VEAVGAPVLGWLRDERSMVRAMDRGRFDPGRR 349
>gi|54022322|ref|YP_116564.1| hypothetical protein nfa3580 [Nocardia farcinica IFM 10152]
gi|54013830|dbj|BAD55200.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=369
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 148/347 (43%), Positives = 195/347 (57%), Gaps = 11/347 (3%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
++ D LR+E+ RVAAA +V PV R +W+ A V+LD A+A C RR
Sbjct 17 LIRDVRLREEVRRVAAAAERELVE--AEPPVGRHSWAGAPLVILDTASALECAAADHQRR 74
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
V ++T E A W AA VGA+ V+ +P L+ + AE E G+ AVV
Sbjct 75 MGVVLVTEGEPGLAAWQAAAAVGAERVIALPGAAVGLIEKFAEHGEPRAGGGVVVAVVGA 134
Query 121 IGGRGG---AGASLFAVALAQAAADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGG 177
GG G AG + A LLVD P GG+DLL+G E+APGLRW DL ++ G
Sbjct 135 CGGAGASVLAGVTALRAAAVGFRRHTLLVDGAPLGGGLDLLLGLESAPGLRWSDLVVEDG 194
Query 178 RLNWSAVRAALPRP-RGISVLSGTRRGYELDAGPV-----DAVIDAGRRGGVTVVCDLPR 231
R+ A+ ALP G+ VLS R G G + AV++AGR G V+CD+
Sbjct 195 RVAAGALHEALPTAGSGLVVLSCGRAGAGRLPGRIGPAAAHAVLEAGRAAGDLVICDVSG 254
Query 232 RLTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAE 291
A + LD+ADLVVLV P +RA AAA ++ + NPN GL+VRGP+PGGLR E
Sbjct 255 ERGPAAEQMLDSADLVVLVVPARLRAAAAAEAVSAYVGTRNPNQGLIVRGPAPGGLRGQE 314
Query 292 VADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGVL 338
+A++ +PLLA++RAQP L +LE GGLRL RR L +AA VL VL
Sbjct 315 IAEILDLPLLAAVRAQPDLPGRLERGGLRLPRRGPLVTAADAVLAVL 361
>gi|269129024|ref|YP_003302394.1| hypothetical protein Tcur_4839 [Thermomonospora curvata DSM 43183]
gi|268313982|gb|ACZ00357.1| hypothetical protein Tcur_4839 [Thermomonospora curvata DSM 43183]
Length=359
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 139/313 (45%), Positives = 176/313 (57%), Gaps = 9/313 (2%)
Query 32 SRKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHVLRMP 91
+R W V++ AD + RR+ V ++T A + AA+ VGAQ + +P
Sbjct 38 ARAQWRRPPLVLVGADLADGLAAGGIARRSGVVLVTTETDAPENFRAAVGVGAQDLATLP 97
Query 92 EQEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAAD----ALLVD 147
E E LV LA AAE G A V V GGRGGAGAS+ A L+ A A LLVD
Sbjct 98 EDEPWLVDALAAAAEPG---GGRAATVCVAGGRGGAGASVLAAMLSLAGARGGLRVLLVD 154
Query 148 LDPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGTRRGYE-L 206
DP GGIDLL+G E APG RWPDLA + GRL + +R ALP G+ +LS R E +
Sbjct 155 GDPLGGGIDLLLGQENAPGCRWPDLAGRRGRLGAATLRRALPAVHGVVMLSWGRTEAEPV 214
Query 207 DAGPVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMAP 266
DA + AV+DA RRG +V DL RR DA +AAL AD +LV P ++RA AAA +A
Sbjct 215 DAETMRAVLDAARRGFDLIVVDLSRRPADADRAALRVADRTLLVVPAELRATAAADKVAA 274
Query 267 VLTAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGL-RLRRRS 325
L ++GL+VRGPSPGGL +A+ G+PLL + RL LEHG L RL RR
Sbjct 275 ALHRDTDDIGLIVRGPSPGGLPGEAMAEALGLPLLGAFEDDRRLPAALEHGDLVRLSRRG 334
Query 326 VLASAARRVLGVL 338
L R++ L
Sbjct 335 SLPDLCDRLIAEL 347
>gi|300790610|ref|YP_003770901.1| hypothetical protein AMED_8806 [Amycolatopsis mediterranei U32]
gi|299800124|gb|ADJ50499.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340532299|gb|AEK47504.1| hypothetical protein RAM_45185 [Amycolatopsis mediterranei S699]
Length=355
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 129/345 (38%), Positives = 185/345 (54%), Gaps = 22/345 (6%)
Query 4 DPGLRDELDRVAAAVGVRVVHLGGRHP---VSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
D + DE+ RVAA G + R P + WS A VVLD A ALPRR
Sbjct 12 DETVLDEILRVAAVAGCEL----DRAPDLTAASGHWSRAPLVVLDEEAVRHPP--ALPRR 65
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
+ + ++ ATW A G + V+ +P++E L A+ E+ + V+ V
Sbjct 66 SGILLVCKGSPGPATWEHAFHSGVERVIALPDEESALAGAFADVVETPAEQPG--LVLGV 123
Query 121 IGGRGGAGASLFAVALAQAAAD----ALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQG 176
+GGRGGAGAS+FA LA AA ALLVD DP +GG+D+L+G E PG RWPD+ L G
Sbjct 124 VGGRGGAGASVFAATLALAADSDPGGALLVDCDPLSGGLDVLLGLEKTPGARWPDVHLSG 183
Query 177 GRLNWSAVRAALPRPR----GISVLSGTRRGYELDAGPVDAVIDAGRRGGVTVVCDLPRR 232
R++ S++ A LP+ R + VL+ G + + A++ AGRR G TVVCDLPR
Sbjct 184 -RVSVSSLAADLPQRRHRGGSLPVLASGPDGDGPEVESLSAILSAGRRAGRTVVCDLPRA 242
Query 233 LTDATQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEV 292
L +A++ A+ ADLV+L+ P ++RAC AA + L+ + +G+V G S A
Sbjct 243 LGEASEEAVLRADLVLLMVPLEIRACLAARKVLNRLSKLTARIGVVTCGHSKDP--AVRT 300
Query 293 ADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRVLGV 337
A + G PL+ASM + L + LE + + LA A +L +
Sbjct 301 AALIGPPLMASMPPERGLWQALERAEFPTKPKGPLAKTAAEILAI 345
>gi|326383475|ref|ZP_08205162.1| hypothetical protein SCNU_11081 [Gordonia neofelifaecis NRRL
B-59395]
gi|326197881|gb|EGD55068.1| hypothetical protein SCNU_11081 [Gordonia neofelifaecis NRRL
B-59395]
Length=347
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 132/338 (40%), Positives = 177/338 (53%), Gaps = 10/338 (2%)
Query 1 MLTDPGLRDELDRVAAAVGVRVVHLGGRHPVSRKTWSAAAAVVLDHAAADRCGRLALPRR 60
+L D L D+L R +AA G +V R R W A AVV D A L LP+R
Sbjct 7 VLADESLHDDLARCSAAAGYTMVLGDPRQ--CRHQWLRAGAVVADSDALGVLAHLDLPQR 64
Query 61 THVSVLTGTEAATATWAAAITVGAQHVLRMPEQEGELVRELAEAAESARDDGICGAVVAV 120
+ + ++ W + +T+GA +P+ E LV L+ A E R VAV
Sbjct 65 GGLLAVGSSDGDARLWRSGLTLGADGGFLLPDDEAGLVAMLSRAREPRRHPA---RAVAV 121
Query 121 IGGRGGAGASLFAVALAQA---AADALLVDLDPWAGGIDLLVGGETAPGLRWPDLALQGG 177
+ G GGAGAS A A+A ++ LL+D+D G DL++G E PGLRW D+ + G
Sbjct 122 VPGHGGAGASTLAAAVALVAAQTSNVLLLDVDQAGPGADLMLGVEAEPGLRWSDVNGETG 181
Query 178 RLNWSAVRAALPRPRGISVLSGTRRGYE-LDAGPVDAVIDAGRRGGVTVVCDLPRRLTDA 236
+ +A+R+A+PR RG+ VL+ R G L + V AV+DAGR G VV D+ R
Sbjct 182 SIGGAALRSAVPRTRGVGVLACDRSGRTPLRSDTVLAVLDAGRGAGDVVVADVGREPGPV 241
Query 237 TQAALDAADLVVLVSPCDVRACAAAATMAPVLTAINPNLGLVVRGPSPGGLRAAEVADVA 296
T +D+ DLVV+V+ V AA + +L L+VRGPSP GL A +VA
Sbjct 242 TAGIVDSVDLVVVVTTATVPGVAATRRTVARMLHERSSL-LMVRGPSPSGLTAEQVASSI 300
Query 297 GVPLLASMRAQPRLAEQLEHGGLRLRRRSVLASAARRV 334
GV LL S RA L + E GGL LR R+ LA AAR V
Sbjct 301 GVELLGSYRADAALPGRCEAGGLVLRSRAPLARAARSV 338
>gi|256374430|ref|YP_003098090.1| hypothetical protein Amir_0275 [Actinosynnema mirum DSM 43827]
gi|255918733|gb|ACU34244.1| hypothetical protein Amir_0275 [Actinosynnema mirum DSM 43827]
Length=371
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 142/314 (46%), Positives = 176/314 (57%), Gaps = 12/314 (3%)
Query 33 RKTWSAAAAVVLDHAAADRCGRLALPRRTHVSVLTGTEAATATWAAAITVGAQHVLRMPE 92
R W A V+LD A C LPRR V +++ TW A+ +G + +
Sbjct 66 RGRWHDAPVVLLDERAVVACAEAGLPRRPGVLLVSTGPPGELTWPRAVELGVERAVSADA 125
Query 93 QEGELVRELAEAAESARDDGICGAVVAVIGGRGGAGASLFAVALAQAAAD----ALLVDL 148
L+R+ E A A G V+AV+GGRGGAGAS+ A A+A+A A +LLVD
Sbjct 126 GLVALLRDATEVAPEA------GRVLAVLGGRGGAGASVLAAAVARAVAASGGPSLLVDC 179
Query 149 DPWAGGIDLLVGGETAPGLRWPDLALQGGRLNWSAVRAALPRPRGISVLSGTRRGYELDA 208
DP GG+DL +G ET+ G+RW DL L G R+ +A+R LP G+ VLS R G A
Sbjct 180 DPLGGGLDLALGAETSAGMRWSDLDLSG-RVPAAALRQVLPACGGVRVLSCGRDGEGPGA 238
Query 209 GPVDAVIDAGRRGGVTVVCDLPRRLTDATQAALDAADLVVLVSPCDVRACAAAATMAPVL 268
G V +V++AGRR G VVCDLPR+ T A AALD ADL VLV P +VRACAAA +A L
Sbjct 239 GAVASVVEAGRRSGQVVVCDLPRQRTPAADAALDRADLAVLVVPAEVRACAAARGVARRL 298
Query 269 TAINPNLGLVVRGPSPGGLRAAEVADVAGVPLLASMRAQPRLAEQLEHGGLRLRRRSVLA 328
+VR + GGL A EVA GVPLL MR Q +LA L+ G R LA
Sbjct 299 AERGARTRALVRVRASGGLSAQEVAAAVGVPLLTRMRGQRQLASALDRGRFPTSTRGPLA 358
Query 329 SAARRVLGVLPRAG 342
AA VL VL RAG
Sbjct 359 KAATTVLEVL-RAG 371
Lambda K H
0.320 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 648422222280
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40