BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3664c
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610800|ref|NP_218181.1| peptide ABC transporter transmembra... 511 3e-143
gi|167970810|ref|ZP_02553087.1| dipeptide-transport integral mem... 510 1e-142
gi|326905498|gb|EGE52431.1| dipeptide-transport membrane protein... 509 1e-142
gi|308406207|ref|ZP_07495571.2| dipeptide-transport membrane pro... 509 2e-142
gi|240172664|ref|ZP_04751323.1| dipeptide-transport integral mem... 476 1e-132
gi|183985122|ref|YP_001853413.1| dipeptide-transport integral me... 460 8e-128
gi|41406509|ref|NP_959345.1| hypothetical protein MAP0411 [Mycob... 458 3e-127
gi|118464640|ref|YP_879748.1| ABC transporter permease [Mycobact... 458 4e-127
gi|118619406|ref|YP_907738.1| dipeptide-transport integral membr... 456 2e-126
gi|254820850|ref|ZP_05225851.1| ABC transporter, permease protei... 456 2e-126
gi|342862001|ref|ZP_08718645.1| hypothetical protein MCOL_24040 ... 438 4e-121
gi|296166719|ref|ZP_06849143.1| oligopeptide ABC superfamily ATP... 429 2e-118
gi|289571902|ref|ZP_06452129.1| dipeptide-transport membrane pro... 426 2e-117
gi|226303988|ref|YP_002763946.1| ABC transporter permease protei... 339 2e-91
gi|229494782|ref|ZP_04388538.1| oligopeptide transport system pe... 337 1e-90
gi|226363655|ref|YP_002781437.1| ABC transporter permease protei... 332 3e-89
gi|312138005|ref|YP_004005341.1| oligopeptide/dipeptide ABC tran... 327 1e-87
gi|325675232|ref|ZP_08154917.1| oligopeptide ABC superfamily ATP... 326 2e-87
gi|111021311|ref|YP_704283.1| peptide ABC transporter permease [... 318 5e-85
gi|315654659|ref|ZP_07907565.1| oligopeptide ABC superfamily ATP... 318 5e-85
gi|304390164|ref|ZP_07372118.1| dipeptide ABC superfamily ATP bi... 317 1e-84
gi|298346077|ref|YP_003718764.1| oligopeptide ABC transporter me... 315 4e-84
gi|296141581|ref|YP_003648824.1| binding-protein-dependent trans... 314 7e-84
gi|227874799|ref|ZP_03992952.1| dipeptide ABC superfamily ATP bi... 310 1e-82
gi|269976782|ref|ZP_06183757.1| oligopeptide ABC transporter, pe... 310 2e-82
gi|317506677|ref|ZP_07964465.1| inner membrane transporter [Segn... 306 1e-81
gi|213965411|ref|ZP_03393607.1| oligopeptide transport system pe... 305 7e-81
gi|340793518|ref|YP_004758981.1| hypothetical protein CVAR_0558 ... 304 1e-80
gi|269795898|ref|YP_003315353.1| peptide ABC transporter permeas... 302 4e-80
gi|237784726|ref|YP_002905431.1| ABC transporter permease [Coryn... 301 6e-80
gi|296393541|ref|YP_003658425.1| binding-protein-dependent trans... 300 1e-79
gi|296118078|ref|ZP_06836660.1| oligopeptide ABC transporter, pe... 298 6e-79
gi|154508414|ref|ZP_02044056.1| hypothetical protein ACTODO_0091... 298 8e-79
gi|325964028|ref|YP_004241934.1| ABC-type dipeptide/oligopeptide... 297 1e-78
gi|308176766|ref|YP_003916172.1| dipeptide/oligopeptide ABC tran... 296 3e-78
gi|227487768|ref|ZP_03918084.1| oligopeptide ABC superfamily ATP... 296 3e-78
gi|315605335|ref|ZP_07880378.1| oligopeptide ABC superfamily ATP... 295 3e-78
gi|116671366|ref|YP_832299.1| binding-protein-dependent transpor... 295 6e-78
gi|334336455|ref|YP_004541607.1| ABC-type transporter, integral ... 293 1e-77
gi|227505661|ref|ZP_03935710.1| oligopeptide ABC superfamily ATP... 293 2e-77
gi|334564086|ref|ZP_08517077.1| ABC transporter permease [Coryne... 292 3e-77
gi|294787038|ref|ZP_06752292.1| oligopeptide ABC transporter, pe... 291 7e-77
gi|25028442|ref|NP_738496.1| putative peptide ABC transporter pe... 291 7e-77
gi|38233554|ref|NP_939321.1| putative peptide transport system m... 290 1e-76
gi|227548449|ref|ZP_03978498.1| dipeptide ABC superfamily ATP bi... 290 2e-76
gi|257068290|ref|YP_003154545.1| ABC-type dipeptide/oligopeptide... 290 2e-76
gi|337290430|ref|YP_004629451.1| hypothetical protein CULC22_008... 290 2e-76
gi|322689437|ref|YP_004209171.1| dipeptide ABC transporter perme... 288 5e-76
gi|227547627|ref|ZP_03977676.1| peptide ABC superfamily ATP bind... 288 5e-76
gi|213691816|ref|YP_002322402.1| binding-protein-dependent trans... 288 6e-76
>gi|15610800|ref|NP_218181.1| peptide ABC transporter transmembrane protein [Mycobacterium
tuberculosis H37Rv]
gi|15843278|ref|NP_338315.1| peptide ABC transporter, permease protein [Mycobacterium tuberculosis
CDC1551]
gi|31794834|ref|NP_857327.1| peptide ABC transporter transmembrane protein [Mycobacterium
bovis AF2122/97]
41 more sequence titles
Length=266
Score = 511 bits (1317), Expect = 3e-143, Method: Compositional matrix adjust.
Identities = 265/266 (99%), Positives = 266/266 (100%), Gaps = 0/266 (0%)
Query 1 VIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 60
+IAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA
Sbjct 1 MIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 60
Query 61 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 120
RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH
Sbjct 61 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 120
Query 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG
Sbjct 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA
Sbjct 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
Query 241 ITVLAFMMMGDALRDALDPASRAWRA 266
ITVLAFMMMGDALRDALDPASRAWRA
Sbjct 241 ITVLAFMMMGDALRDALDPASRAWRA 266
>gi|167970810|ref|ZP_02553087.1| dipeptide-transport integral membrane protein ABC transporter
dppC [Mycobacterium tuberculosis H37Ra]
gi|253800705|ref|YP_003033706.1| hypothetical protein TBMG_03704 [Mycobacterium tuberculosis KZN
1435]
gi|254233160|ref|ZP_04926486.1| dipeptide-transport integral membrane protein ABC transporter
dppC [Mycobacterium tuberculosis C]
31 more sequence titles
Length=287
Score = 510 bits (1313), Expect = 1e-142, Method: Compositional matrix adjust.
Identities = 266/266 (100%), Positives = 266/266 (100%), Gaps = 0/266 (0%)
Query 1 VIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 60
VIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA
Sbjct 22 VIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 81
Query 61 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 120
RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH
Sbjct 82 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 141
Query 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG
Sbjct 142 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 201
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA
Sbjct 202 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 261
Query 241 ITVLAFMMMGDALRDALDPASRAWRA 266
ITVLAFMMMGDALRDALDPASRAWRA
Sbjct 262 ITVLAFMMMGDALRDALDPASRAWRA 287
>gi|326905498|gb|EGE52431.1| dipeptide-transport membrane protein ABC transporter dppC [Mycobacterium
tuberculosis W-148]
Length=266
Score = 509 bits (1312), Expect = 1e-142, Method: Compositional matrix adjust.
Identities = 264/266 (99%), Positives = 265/266 (99%), Gaps = 0/266 (0%)
Query 1 VIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 60
+IAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA
Sbjct 1 MIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 60
Query 61 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 120
RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH
Sbjct 61 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 120
Query 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAV
Sbjct 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVA 180
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA
Sbjct 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
Query 241 ITVLAFMMMGDALRDALDPASRAWRA 266
ITVLAFMMMGDALRDALDPASRAWRA
Sbjct 241 ITVLAFMMMGDALRDALDPASRAWRA 266
>gi|308406207|ref|ZP_07495571.2| dipeptide-transport membrane protein ABC transporter dppC [Mycobacterium
tuberculosis SUMu012]
gi|308364053|gb|EFP52904.1| dipeptide-transport membrane protein ABC transporter dppC [Mycobacterium
tuberculosis SUMu012]
Length=296
Score = 509 bits (1311), Expect = 2e-142, Method: Compositional matrix adjust.
Identities = 266/266 (100%), Positives = 266/266 (100%), Gaps = 0/266 (0%)
Query 1 VIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 60
VIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA
Sbjct 31 VIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 90
Query 61 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 120
RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH
Sbjct 91 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 150
Query 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG
Sbjct 151 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 210
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA
Sbjct 211 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 270
Query 241 ITVLAFMMMGDALRDALDPASRAWRA 266
ITVLAFMMMGDALRDALDPASRAWRA
Sbjct 271 ITVLAFMMMGDALRDALDPASRAWRA 296
>gi|240172664|ref|ZP_04751323.1| dipeptide-transport integral membrane protein ABC transporter
DppC [Mycobacterium kansasii ATCC 12478]
Length=287
Score = 476 bits (1226), Expect = 1e-132, Method: Compositional matrix adjust.
Identities = 243/266 (92%), Positives = 255/266 (96%), Gaps = 0/266 (0%)
Query 1 VIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 60
V+AAALILLILVVAAFP LFT ADPTYADPSQSMLAPSAAHWFGTDLQGHDIY+RTVYGA
Sbjct 22 VVAAALILLILVVAAFPGLFTGADPTYADPSQSMLAPSAAHWFGTDLQGHDIYARTVYGA 81
Query 61 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 120
RASV VGLGAT AVF VG ALGALAGFYG W+DAV+SR+TDVF GLPLLLAAIVLMQVMH
Sbjct 82 RASVMVGLGATFAVFGVGTALGALAGFYGGWLDAVISRITDVFFGLPLLLAAIVLMQVMH 141
Query 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
HRTVWTVIAILALFGWPQ+AR+ARG+VLEVR SDYVLAAKALGL+RFQILLRHALPNAVG
Sbjct 142 HRTVWTVIAILALFGWPQIARVARGSVLEVRDSDYVLAAKALGLSRFQILLRHALPNAVG 201
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
PVIAVATVALG+FIVTEATLSYLGVGLPTSVVSWGGDINVAQ RLR+GSPILFYPAGAL
Sbjct 202 PVIAVATVALGVFIVTEATLSYLGVGLPTSVVSWGGDINVAQMRLRAGSPILFYPAGALG 261
Query 241 ITVLAFMMMGDALRDALDPASRAWRA 266
+TVLAFMMMGDALRDALDPASRAWRA
Sbjct 262 MTVLAFMMMGDALRDALDPASRAWRA 287
>gi|183985122|ref|YP_001853413.1| dipeptide-transport integral membrane protein ABC transporter
DppC [Mycobacterium marinum M]
gi|183178448|gb|ACC43558.1| dipeptide-transport integral membrane protein ABC transporter
DppC [Mycobacterium marinum M]
Length=287
Score = 460 bits (1184), Expect = 8e-128, Method: Compositional matrix adjust.
Identities = 231/266 (87%), Positives = 249/266 (94%), Gaps = 0/266 (0%)
Query 1 VIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 60
VIAA LI+ ILVVAAFPSLFT DP+YADPSQSML+PS AHWFGTDLQGHDIY+RTVYGA
Sbjct 22 VIAAVLIVFILVVAAFPSLFTGIDPSYADPSQSMLSPSTAHWFGTDLQGHDIYARTVYGA 81
Query 61 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 120
RASV VGLGAT A F+ G LGALAG+YG W+DAVVSR+TD+F GLPLLLAAIVLMQVMH
Sbjct 82 RASVVVGLGATAAAFIAGVTLGALAGYYGGWLDAVVSRITDIFFGLPLLLAAIVLMQVMH 141
Query 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
HRTVWTVIAILALFGWPQ+ARIAR +VLEVR SD+VLAAKALG++RFQILLRHALPNA+G
Sbjct 142 HRTVWTVIAILALFGWPQIARIARSSVLEVRGSDFVLAAKALGMSRFQILLRHALPNAIG 201
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
PVIAVATVALGIFIVTEATLSYLGVGLP +VVSWGGDINVAQ RLR+GSPILFYPAGALA
Sbjct 202 PVIAVATVALGIFIVTEATLSYLGVGLPPTVVSWGGDINVAQMRLRAGSPILFYPAGALA 261
Query 241 ITVLAFMMMGDALRDALDPASRAWRA 266
+TVLAFMMMGDALRDALDPASRAWRA
Sbjct 262 VTVLAFMMMGDALRDALDPASRAWRA 287
>gi|41406509|ref|NP_959345.1| hypothetical protein MAP0411 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41394858|gb|AAS02728.1| DppC [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336460813|gb|EGO39698.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease
component [Mycobacterium avium subsp. paratuberculosis
S397]
Length=291
Score = 458 bits (1179), Expect = 3e-127, Method: Compositional matrix adjust.
Identities = 234/264 (89%), Positives = 248/264 (94%), Gaps = 0/264 (0%)
Query 3 AAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARA 62
A LIL+IL VA FP+LFTAADPTYADP+QSML PS HWFGTDLQGHD+Y+RTVYGARA
Sbjct 28 AGLLILVILAVALFPALFTAADPTYADPAQSMLPPSRTHWFGTDLQGHDVYARTVYGARA 87
Query 63 SVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHR 122
SVTVGLGA VFVVGGALGALAGFYG WIDAVVSRVTDVF GLPLLL AIVLMQV+HHR
Sbjct 88 SVTVGLGAAAIVFVVGGALGALAGFYGGWIDAVVSRVTDVFFGLPLLLVAIVLMQVLHHR 147
Query 123 TVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPV 182
TVWTVIAILALFGWPQVARIARGAVL VRASDYVLAAKALG++RFQIL+RHALPNA+GPV
Sbjct 148 TVWTVIAILALFGWPQVARIARGAVLAVRASDYVLAAKALGMSRFQILIRHALPNALGPV 207
Query 183 IAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAIT 242
IAVAT+ALG+FIVTEATLSYLGVGLP SVVSWGGDIN+AQTRLR+GSPILFYPAGALA T
Sbjct 208 IAVATIALGLFIVTEATLSYLGVGLPPSVVSWGGDINLAQTRLRAGSPILFYPAGALAAT 267
Query 243 VLAFMMMGDALRDALDPASRAWRA 266
VLAFMMMGDALRDALDPASRAWRA
Sbjct 268 VLAFMMMGDALRDALDPASRAWRA 291
>gi|118464640|ref|YP_879748.1| ABC transporter permease [Mycobacterium avium 104]
gi|254773472|ref|ZP_05214988.1| ABC transporter, permease protein DppC [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118165927|gb|ABK66824.1| ABC transporter, permease protein DppC [Mycobacterium avium 104]
Length=291
Score = 458 bits (1179), Expect = 4e-127, Method: Compositional matrix adjust.
Identities = 234/264 (89%), Positives = 249/264 (95%), Gaps = 0/264 (0%)
Query 3 AAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARA 62
A LIL+IL VA FP+LFTAADPTYADP+QS+L PS HWFGTDLQGHD+Y+RTVYGARA
Sbjct 28 AGLLILVILAVALFPALFTAADPTYADPAQSLLPPSRTHWFGTDLQGHDVYARTVYGARA 87
Query 63 SVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHR 122
SVTVGLGA VFVVGGALGALAGFYG WIDAVVSRVTDVF GLPLLLAAIVLMQV+HHR
Sbjct 88 SVTVGLGAAAIVFVVGGALGALAGFYGGWIDAVVSRVTDVFFGLPLLLAAIVLMQVLHHR 147
Query 123 TVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPV 182
TVWTVIAILALFGWPQVARIARGAVL VRASDYVLAAKALG++RFQIL+RHALPNA+GPV
Sbjct 148 TVWTVIAILALFGWPQVARIARGAVLAVRASDYVLAAKALGMSRFQILIRHALPNALGPV 207
Query 183 IAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAIT 242
IAVAT+ALG+FIVTEATLSYLGVGLP SVVSWGGDIN+AQTRLR+GSPILFYPAGALA T
Sbjct 208 IAVATIALGLFIVTEATLSYLGVGLPPSVVSWGGDINLAQTRLRAGSPILFYPAGALAAT 267
Query 243 VLAFMMMGDALRDALDPASRAWRA 266
VLAFMMMGDALRDALDPASRAWRA
Sbjct 268 VLAFMMMGDALRDALDPASRAWRA 291
>gi|118619406|ref|YP_907738.1| dipeptide-transport integral membrane protein ABC transporter
DppC [Mycobacterium ulcerans Agy99]
gi|118571516|gb|ABL06267.1| dipeptide-transport integral membrane protein ABC transporter
DppC [Mycobacterium ulcerans Agy99]
Length=287
Score = 456 bits (1173), Expect = 2e-126, Method: Compositional matrix adjust.
Identities = 229/266 (87%), Positives = 247/266 (93%), Gaps = 0/266 (0%)
Query 1 VIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 60
VIAA LI+ IL VAAFPSLFT DP+YADPSQSML+PS AHWFGTDLQGHDIY+RTVYGA
Sbjct 22 VIAAVLIVFILFVAAFPSLFTGIDPSYADPSQSMLSPSTAHWFGTDLQGHDIYARTVYGA 81
Query 61 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 120
RASV VGLGAT A F+ G LGALAG+YG W+DAVVSR+TD+F GLPLLLAAIVLMQVMH
Sbjct 82 RASVVVGLGATAAAFIAGVTLGALAGYYGGWLDAVVSRITDIFFGLPLLLAAIVLMQVMH 141
Query 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
HRTVWTVIAILALFGWPQ+ARIAR +VLEVR SD+VLAAKALG++RFQILLRHALPNA+G
Sbjct 142 HRTVWTVIAILALFGWPQIARIARSSVLEVRGSDFVLAAKALGMSRFQILLRHALPNAIG 201
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
PVIAVATVALGIFIVTEATLSYLGVGLP +VVSWG DINVAQ RLR+GSPILFYPAGALA
Sbjct 202 PVIAVATVALGIFIVTEATLSYLGVGLPPTVVSWGDDINVAQMRLRAGSPILFYPAGALA 261
Query 241 ITVLAFMMMGDALRDALDPASRAWRA 266
+TVLAFMMMGDALRDALDPASRAWRA
Sbjct 262 VTVLAFMMMGDALRDALDPASRAWRA 287
>gi|254820850|ref|ZP_05225851.1| ABC transporter, permease protein DppC [Mycobacterium intracellulare
ATCC 13950]
Length=291
Score = 456 bits (1172), Expect = 2e-126, Method: Compositional matrix adjust.
Identities = 233/264 (89%), Positives = 247/264 (94%), Gaps = 0/264 (0%)
Query 3 AAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARA 62
AA LI I+ VA FP+LFT DPTYADP QS+L S AHWFGTDLQGHD+Y+RTVYGARA
Sbjct 28 AALLIAFIVAVAMFPALFTTVDPTYADPGQSLLPASRAHWFGTDLQGHDVYARTVYGARA 87
Query 63 SVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHR 122
SVTVGLGA VFVVGGALGALAGFYG WIDAVVSRVTDVF GLPLLLAAIVLMQV+HHR
Sbjct 88 SVTVGLGAAAIVFVVGGALGALAGFYGGWIDAVVSRVTDVFFGLPLLLAAIVLMQVLHHR 147
Query 123 TVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPV 182
TVWTVIAILALFGWPQVARIARGAVL VRASDYVLAAKALG++RFQILLRHALPNA+GPV
Sbjct 148 TVWTVIAILALFGWPQVARIARGAVLAVRASDYVLAAKALGMSRFQILLRHALPNALGPV 207
Query 183 IAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAIT 242
IAVAT+ALG+FIVTEATLSYLGVGLPTSVVSWGGDIN+AQTRLR+GSPILFYPAGALA+T
Sbjct 208 IAVATIALGLFIVTEATLSYLGVGLPTSVVSWGGDINLAQTRLRAGSPILFYPAGALAMT 267
Query 243 VLAFMMMGDALRDALDPASRAWRA 266
VLAFMMMGDALRDALDPASRAWRA
Sbjct 268 VLAFMMMGDALRDALDPASRAWRA 291
>gi|342862001|ref|ZP_08718645.1| hypothetical protein MCOL_24040 [Mycobacterium colombiense CECT
3035]
gi|342130541|gb|EGT83850.1| hypothetical protein MCOL_24040 [Mycobacterium colombiense CECT
3035]
Length=285
Score = 438 bits (1127), Expect = 4e-121, Method: Compositional matrix adjust.
Identities = 218/251 (87%), Positives = 236/251 (95%), Gaps = 0/251 (0%)
Query 16 FPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVF 75
FP+LFT ADP YADP QS+ +PSA HWFGTDLQGHDIY+RTVYGARASVTVGLGATL VF
Sbjct 35 FPALFTHADPGYADPGQSLRSPSAEHWFGTDLQGHDIYARTVYGARASVTVGLGATLLVF 94
Query 76 VVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRTVWTVIAILALFG 135
VGG +GALAGFYG W+DAV+SRVTD+F GLPLLLAAIVLMQV+HHRTVWTVIAILALFG
Sbjct 95 AVGGVVGALAGFYGGWLDAVISRVTDIFFGLPLLLAAIVLMQVLHHRTVWTVIAILALFG 154
Query 136 WPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVALGIFIV 195
WPQ+ARIARGAVLEVR SDYVLAAKALG++RFQ LLRHALPNAVGPVIA++T+ALG FIV
Sbjct 155 WPQIARIARGAVLEVRGSDYVLAAKALGMSRFQTLLRHALPNAVGPVIAMSTIALGAFIV 214
Query 196 TEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALRD 255
TEATLSYLGVGLP+SVVSWGGDIN+AQTRLR+GSPILFYPAGALA TVLAFMMMGDALRD
Sbjct 215 TEATLSYLGVGLPSSVVSWGGDINLAQTRLRAGSPILFYPAGALATTVLAFMMMGDALRD 274
Query 256 ALDPASRAWRA 266
ALDPASRA RA
Sbjct 275 ALDPASRARRA 285
>gi|296166719|ref|ZP_06849143.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295897889|gb|EFG77471.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=290
Score = 429 bits (1102), Expect = 2e-118, Method: Compositional matrix adjust.
Identities = 231/265 (88%), Positives = 245/265 (93%), Gaps = 0/265 (0%)
Query 1 VIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 60
VIA LIL I VA FP+LFTAADP YADP+QS+L PS AHWFGTDLQGHD+Y+RTVYGA
Sbjct 25 VIAGLLILFIAAVALFPALFTAADPAYADPAQSLLPPSRAHWFGTDLQGHDVYARTVYGA 84
Query 61 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 120
RASVTVG+GA LAVFVVGGALGALAGFYG WIDAVVSRV DVF GLPLLLAAIVLMQVM
Sbjct 85 RASVTVGVGAALAVFVVGGALGALAGFYGGWIDAVVSRVGDVFFGLPLLLAAIVLMQVMR 144
Query 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
HRTVWTVIA+LALFGWPQVARIARG+VL VR SDYVLAAKALGL+RFQILLRHALPNA+G
Sbjct 145 HRTVWTVIAVLALFGWPQVARIARGSVLAVRGSDYVLAAKALGLSRFQILLRHALPNALG 204
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
PVIA+AT+ALG FIVTEATLSYLGVGLP SVVSWGGDIN+AQTRLR+GSPILFYPAGALA
Sbjct 205 PVIAMATIALGAFIVTEATLSYLGVGLPPSVVSWGGDINLAQTRLRAGSPILFYPAGALA 264
Query 241 ITVLAFMMMGDALRDALDPASRAWR 265
TVLAFMMMGDALRDALDPASR WR
Sbjct 265 TTVLAFMMMGDALRDALDPASRVWR 289
>gi|289571902|ref|ZP_06452129.1| dipeptide-transport membrane protein ABC transporter dppC [Mycobacterium
tuberculosis T17]
gi|289545656|gb|EFD49304.1| dipeptide-transport membrane protein ABC transporter dppC [Mycobacterium
tuberculosis T17]
Length=292
Score = 426 bits (1095), Expect = 2e-117, Method: Compositional matrix adjust.
Identities = 226/256 (89%), Positives = 233/256 (92%), Gaps = 5/256 (1%)
Query 16 FPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVF 75
FPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVF
Sbjct 37 FPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVF 96
Query 76 VVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRTVWTVIAILALFG 135
VVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRTVWTVIAILALFG
Sbjct 97 VVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRTVWTVIAILALFG 156
Query 136 WPQVARIARGAVLEVRASDYV-----LAAKALGLNRFQILLRHALPNAVGPVIAVATVAL 190
WPQVARIARGA R+S + + G + ++L+ PNAVGPVIAVATVAL
Sbjct 157 WPQVARIARGAAKGYRSSWPIERLTMFSDHDSGSHLSMMVLKALGPNAVGPVIAVATVAL 216
Query 191 GIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMG 250
GIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMG
Sbjct 217 GIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMG 276
Query 251 DALRDALDPASRAWRA 266
DALRDALDPASRAWRA
Sbjct 277 DALRDALDPASRAWRA 292
>gi|226303988|ref|YP_002763946.1| ABC transporter permease protein [Rhodococcus erythropolis PR4]
gi|226183103|dbj|BAH31207.1| putative ABC transporter permease protein [Rhodococcus erythropolis
PR4]
Length=318
Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 156/248 (63%), Positives = 202/248 (82%), Gaps = 0/248 (0%)
Query 16 FPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVF 75
FPSLFT+ DP + D + SM P++ HWFG D QG D+YSRT+YGARASV VG+G T +V
Sbjct 70 FPSLFTSTDPRFCDLTYSMQGPTSGHWFGFDRQGCDVYSRTIYGARASVLVGVGVTASVL 129
Query 76 VVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRTVWTVIAILALFG 135
V+G GAL+GFYG W D+++SRV D+F G+PL+LAAIVLMQ+ RT+WTV+ +LALFG
Sbjct 130 VIGVIFGALSGFYGGWTDSILSRVADIFFGIPLILAAIVLMQLFTDRTIWTVVGVLALFG 189
Query 136 WPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVALGIFIV 195
WPQ+ARIARGAV+ + +DYV+A++ALG+++ + L+RH +PN++ P+I VAT++LG +IV
Sbjct 190 WPQMARIARGAVISAKNNDYVMASEALGVSKLKTLIRHVIPNSLAPIIVVATISLGTYIV 249
Query 196 TEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALRD 255
EATLS+LG+GLP++ VSWGGDI+ AQ LR GS ILFYPA ALAITVL F+MMGDALRD
Sbjct 250 AEATLSFLGIGLPSTEVSWGGDISNAQVTLRQGSTILFYPATALAITVLGFIMMGDALRD 309
Query 256 ALDPASRA 263
ALDP SR
Sbjct 310 ALDPKSRK 317
>gi|229494782|ref|ZP_04388538.1| oligopeptide transport system permease protein OppC [Rhodococcus
erythropolis SK121]
gi|229318278|gb|EEN84143.1| oligopeptide transport system permease protein OppC [Rhodococcus
erythropolis SK121]
Length=318
Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 155/248 (63%), Positives = 201/248 (82%), Gaps = 0/248 (0%)
Query 16 FPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVF 75
FP LFT+ DP + D + SM P++ HWFG D QG D+YSRT+YGARASV VG+G T +V
Sbjct 70 FPGLFTSTDPRFCDLTYSMQGPTSGHWFGFDRQGCDVYSRTIYGARASVLVGVGVTASVL 129
Query 76 VVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRTVWTVIAILALFG 135
V+G GAL+GFYG W D+++SRV D+F G+PL+LAAIVLMQ+ RT+WTV+ +LALFG
Sbjct 130 VIGVIFGALSGFYGGWTDSILSRVADIFFGIPLILAAIVLMQLFTDRTIWTVVGVLALFG 189
Query 136 WPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVALGIFIV 195
WPQ+ARIARGAV+ + +DYV+A++ALG+++ + L+RH +PN++ P+I VAT++LG +IV
Sbjct 190 WPQMARIARGAVISAKNNDYVMASEALGVSKLKTLIRHVIPNSLAPIIVVATISLGTYIV 249
Query 196 TEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALRD 255
EATLS+LG+GLP++ VSWGGDI+ AQ LR GS ILFYPA ALAITVL F+MMGDALRD
Sbjct 250 AEATLSFLGIGLPSTEVSWGGDISNAQVTLRQGSTILFYPATALAITVLGFIMMGDALRD 309
Query 256 ALDPASRA 263
ALDP SR
Sbjct 310 ALDPKSRK 317
>gi|226363655|ref|YP_002781437.1| ABC transporter permease protein [Rhodococcus opacus B4]
gi|226242144|dbj|BAH52492.1| putative ABC transporter permease protein [Rhodococcus opacus
B4]
Length=324
Score = 332 bits (852), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 156/247 (64%), Positives = 203/247 (83%), Gaps = 0/247 (0%)
Query 16 FPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVF 75
FP LFT+ DP + D + SM PSA HWFG D QG DIYSRT++GARASV VG+G T V
Sbjct 76 FPDLFTSTDPRFCDLAFSMQGPSAGHWFGFDKQGCDIYSRTIHGARASVLVGVGVTSIVL 135
Query 76 VVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRTVWTVIAILALFG 135
VVG G++AGFYG +D+++SRV D+F G+PL+LAAIVLMQ+ +RT+WT+I +LALFG
Sbjct 136 VVGVVFGSVAGFYGGAVDSLLSRVADIFFGIPLILAAIVLMQLFTNRTIWTLIVVLALFG 195
Query 136 WPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVALGIFIV 195
WPQ+ARIARGAV+ +++DYV+A++ALG++ + L+RH LPN++ P+I +AT++LGI+IV
Sbjct 196 WPQMARIARGAVISAKSNDYVMASRALGVSNVRTLVRHVLPNSLAPIIVIATISLGIYIV 255
Query 196 TEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALRD 255
EATLS+LG+GLP++ +SWGGDI+ AQ LR GSPILFYPA ALAITVL F+MMGDALRD
Sbjct 256 AEATLSFLGIGLPSTEISWGGDISTAQVTLRQGSPILFYPATALAITVLGFIMMGDALRD 315
Query 256 ALDPASR 262
ALDP +R
Sbjct 316 ALDPRAR 322
>gi|312138005|ref|YP_004005341.1| oligopeptide/dipeptide ABC transporter transmembrane protein
[Rhodococcus equi 103S]
gi|311887344|emb|CBH46655.1| putative oligopeptide/dipeptide ABC transporter integral membrane
subunit [Rhodococcus equi 103S]
Length=280
Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 155/244 (64%), Positives = 200/244 (82%), Gaps = 0/244 (0%)
Query 16 FPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVF 75
FPS+FT+ DP Y + + S+ P + HWFG D QG D+Y+RTVYGAR SVTVG+ T +V
Sbjct 31 FPSVFTSVDPRYCNIADSLAPPRSGHWFGFDRQGCDVYARTVYGARPSVTVGVCVTASVL 90
Query 76 VVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRTVWTVIAILALFG 135
+G GAL+G+YG W D+++SRVTD+F G+PL+LAAIVLMQ+ RT+WTV+A+LALFG
Sbjct 91 AIGVLFGALSGYYGGWADSLLSRVTDIFFGIPLILAAIVLMQLFAQRTIWTVVAVLALFG 150
Query 136 WPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVALGIFIV 195
WPQ+ARIARGAV+ ++ D+VLAA+A+G++ IL+RH LPNA+ P+I VAT++LG FIV
Sbjct 151 WPQMARIARGAVISAKSRDFVLAARAVGMSGPSILVRHVLPNALAPIIVVATMSLGTFIV 210
Query 196 TEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALRD 255
TEATLS+LG+GLP++ VSWGGDI+ AQ LR GS ILFYPAGALAITVL F+++GDALRD
Sbjct 211 TEATLSFLGIGLPSTTVSWGGDISTAQVTLRRGSTILFYPAGALAITVLGFVLLGDALRD 270
Query 256 ALDP 259
ALDP
Sbjct 271 ALDP 274
>gi|325675232|ref|ZP_08154917.1| oligopeptide ABC superfamily ATP binding cassette transporter,
permease protein [Rhodococcus equi ATCC 33707]
gi|325553938|gb|EGD23615.1| oligopeptide ABC superfamily ATP binding cassette transporter,
permease protein [Rhodococcus equi ATCC 33707]
Length=280
Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 154/244 (64%), Positives = 200/244 (82%), Gaps = 0/244 (0%)
Query 16 FPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVF 75
FPS+FT+ DP Y + + S+ P + HWFG D QG D+Y+RTVYGAR S+TVG+ T +V
Sbjct 31 FPSVFTSVDPRYCNIADSLAPPRSGHWFGFDRQGCDVYARTVYGARPSITVGVCVTASVL 90
Query 76 VVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRTVWTVIAILALFG 135
+G GAL+G+YG W D+++SRVTD+F G+PL+LAAIVLMQ+ RT+WTV+A+LALFG
Sbjct 91 AIGVLFGALSGYYGGWADSLLSRVTDIFFGIPLILAAIVLMQLFAQRTIWTVVAVLALFG 150
Query 136 WPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVALGIFIV 195
WPQ+ARIARGAV+ ++ D+VLAA+A+G++ IL+RH LPNA+ P+I VAT++LG FIV
Sbjct 151 WPQMARIARGAVISAKSRDFVLAARAVGMSGPSILVRHVLPNALAPIIVVATMSLGTFIV 210
Query 196 TEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALRD 255
TEATLS+LG+GLP++ VSWGGDI+ AQ LR GS ILFYPAGALAITVL F+++GDALRD
Sbjct 211 TEATLSFLGIGLPSTTVSWGGDISTAQVTLRRGSTILFYPAGALAITVLGFVLLGDALRD 270
Query 256 ALDP 259
ALDP
Sbjct 271 ALDP 274
>gi|111021311|ref|YP_704283.1| peptide ABC transporter permease [Rhodococcus jostii RHA1]
gi|110820841|gb|ABG96125.1| ABC peptide transporter, permease component [Rhodococcus jostii
RHA1]
Length=324
Score = 318 bits (815), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 157/248 (64%), Positives = 201/248 (82%), Gaps = 0/248 (0%)
Query 16 FPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVF 75
FP LFT DP + D + SM PS+ HWFG D QG DIYSRT+YGARASV VG+G T V
Sbjct 76 FPGLFTGTDPRFCDLAFSMQGPSSGHWFGFDKQGCDIYSRTIYGARASVLVGVGVTSIVL 135
Query 76 VVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRTVWTVIAILALFG 135
VVG GA+AG+YG W D+++SRV D+F G+PL+LAAIVLMQ+ +RT+WT+I +LALFG
Sbjct 136 VVGVVFGAVAGYYGGWADSLLSRVADIFFGIPLILAAIVLMQLFANRTIWTLIVVLALFG 195
Query 136 WPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVALGIFIV 195
WPQ+ARIARGAV+ + +DYV+A++ALG++ + L+RH LPN++ P+I +AT++LGI+IV
Sbjct 196 WPQMARIARGAVISAKNNDYVMASRALGVSNMRTLVRHVLPNSLAPIIVIATISLGIYIV 255
Query 196 TEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALRD 255
EATLS+LG+GLP++ +SWGGDI+ AQ LR GSPILFYPA ALAITVL F+MMGDALRD
Sbjct 256 AEATLSFLGIGLPSTEISWGGDISTAQVTLRQGSPILFYPATALAITVLGFIMMGDALRD 315
Query 256 ALDPASRA 263
ALDP +R
Sbjct 316 ALDPKARK 323
>gi|315654659|ref|ZP_07907565.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Mobiluncus curtisii ATCC 51333]
gi|315657424|ref|ZP_07910306.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|315491123|gb|EFU80742.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Mobiluncus curtisii ATCC 51333]
gi|315491896|gb|EFU81505.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length=322
Score = 318 bits (815), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 153/262 (59%), Positives = 205/262 (79%), Gaps = 1/262 (0%)
Query 2 IAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGAR 61
+AAA+IL +++AAFPSLFT+ DP + + S PS H FG D QG DI +RTVYGAR
Sbjct 60 VAAAIILFAIMLAAFPSLFTSVDPKFCELKNSYGKPSMGHPFGFDRQGCDIMARTVYGAR 119
Query 62 ASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVM-H 120
ASV VG+ T+ V ++GG G LAGF+G W+D+ +SR+TD+ +P LLAAIV+MQ+
Sbjct 120 ASVIVGILTTVVVVLIGGTFGTLAGFFGGWLDSFLSRITDIVFAVPFLLAAIVVMQMFRE 179
Query 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
+RT++TV+ +LA+FGWPQ+ARI RGAV++ + ++V AAKALG ++ +I+LRH +PNA+
Sbjct 180 NRTIFTVVLVLAVFGWPQIARITRGAVMQTKNEEFVNAAKALGESKIRIILRHIVPNAIA 239
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
P+I ATVALG FIV+EATLS+LGVGLP+ VVSWGGDI+ AQ+ LR +LFYPAGALA
Sbjct 240 PMIVYATVALGTFIVSEATLSFLGVGLPSDVVSWGGDISRAQSALRQNPSVLFYPAGALA 299
Query 241 ITVLAFMMMGDALRDALDPASR 262
+TVL+F+MMGD +RDALDP +R
Sbjct 300 LTVLSFIMMGDVVRDALDPKAR 321
>gi|304390164|ref|ZP_07372118.1| dipeptide ABC superfamily ATP binding cassette transporter, membrane
protein DppC [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|304326646|gb|EFL93890.1| dipeptide ABC superfamily ATP binding cassette transporter, membrane
protein DppC [Mobiluncus curtisii subsp. curtisii ATCC
35241]
Length=337
Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 153/262 (59%), Positives = 204/262 (78%), Gaps = 1/262 (0%)
Query 2 IAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGAR 61
+AAA+IL +++AAFPSLFT+ DP + + S PS H FG D QG DI +RTVYGAR
Sbjct 75 VAAAIILFAILLAAFPSLFTSVDPKFCELKNSYGKPSMGHPFGFDRQGCDIMARTVYGAR 134
Query 62 ASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVM-H 120
ASV VG+ T+ V ++GG G LAGF+G W+D+ +SR+TD+ +P LLAAIV+MQ+
Sbjct 135 ASVIVGILTTVVVVLIGGTFGTLAGFFGGWLDSFLSRITDIVFAVPFLLAAIVVMQMFRE 194
Query 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
+RT++TV+ +LA+FGWPQ+ARI RGAV++ + ++V AAKALG ++ +I+LRH +PNA
Sbjct 195 NRTIFTVVLVLAVFGWPQIARITRGAVMQTKNEEFVNAAKALGESKIRIILRHIVPNATA 254
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
P+I ATVALG FIV+EATLS+LGVGLP+ VVSWGGDI+ AQ+ LR +LFYPAGALA
Sbjct 255 PMIVYATVALGTFIVSEATLSFLGVGLPSDVVSWGGDISRAQSALRQNPSVLFYPAGALA 314
Query 241 ITVLAFMMMGDALRDALDPASR 262
+TVL+F+MMGD +RDALDP +R
Sbjct 315 LTVLSFIMMGDVVRDALDPKAR 336
>gi|298346077|ref|YP_003718764.1| oligopeptide ABC transporter membrane protein [Mobiluncus curtisii
ATCC 43063]
gi|298236138|gb|ADI67270.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Mobiluncus curtisii ATCC 43063]
Length=337
Score = 315 bits (808), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 152/262 (59%), Positives = 204/262 (78%), Gaps = 1/262 (0%)
Query 2 IAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGAR 61
+AAA+IL +++AAFPSLFT+ DP + + S PS H FG D QG DI +RTVYGA
Sbjct 75 VAAAIILFAIMLAAFPSLFTSVDPKFCELKNSYGKPSMGHPFGFDRQGCDIMARTVYGAH 134
Query 62 ASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVM-H 120
ASV VG+ T+ V ++GG G LAGF+G W+D+ +SR+TD+ +P LLAAIV+MQ+
Sbjct 135 ASVIVGILTTVVVVLIGGTFGTLAGFFGGWLDSFLSRITDIVFAVPFLLAAIVVMQMFRE 194
Query 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
+RT++TV+ +LA+FGWPQ+ARI RGAV++ + ++V AAKALG ++ +I+LRH +PNA+
Sbjct 195 NRTIFTVVLVLAVFGWPQIARITRGAVMQTKNEEFVNAAKALGESKIRIILRHIVPNAIA 254
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
P+I ATVALG FIV+EATLS+LGVGLP+ VVSWGGDI+ AQ+ LR +LFYPAGALA
Sbjct 255 PMIVYATVALGTFIVSEATLSFLGVGLPSDVVSWGGDISRAQSALRQNPSVLFYPAGALA 314
Query 241 ITVLAFMMMGDALRDALDPASR 262
+TVL+F+MMGD +RDALDP +R
Sbjct 315 LTVLSFIMMGDVVRDALDPKAR 336
>gi|296141581|ref|YP_003648824.1| binding-protein-dependent transporters inner membrane component
[Tsukamurella paurometabola DSM 20162]
gi|296029715|gb|ADG80485.1| binding-protein-dependent transport systems inner membrane component
[Tsukamurella paurometabola DSM 20162]
Length=316
Score = 314 bits (805), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 150/248 (61%), Positives = 196/248 (80%), Gaps = 1/248 (0%)
Query 16 FPSLFT-AADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAV 74
FP +F DP A +S+L PS HWFGTDLQG+DIY+RT+YGARASV VG+ TLAV
Sbjct 67 FPGVFAFGKDPHEASLDRSLLPPSGEHWFGTDLQGYDIYARTIYGARASVLVGVLTTLAV 126
Query 75 FVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRTVWTVIAILALF 134
V+GG LGA AGF+G W+D+V++R++DVF G+PL+LAA+V+MQ++ RTV +V+ +L +F
Sbjct 127 VVIGGLLGATAGFFGGWLDSVIARLSDVFFGVPLMLAAVVVMQMVTERTVLSVVFVLTIF 186
Query 135 GWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVALGIFI 194
WPQ+ARIAR A + VR +++ A+K+LG ++ + L H +PN +GPVI VATVALGI+I
Sbjct 187 SWPQIARIARSAAISVRNEEFITASKSLGASKIRTLFTHVIPNCLGPVIVVATVALGIYI 246
Query 195 VTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALR 254
VTEATLSYLG+GLP+S VSWG DI+ QT LR G+PILF+PA ALA+TVL FMM+GD L
Sbjct 247 VTEATLSYLGIGLPSSTVSWGMDISDGQTLLREGTPILFFPASALALTVLTFMMLGDVLS 306
Query 255 DALDPASR 262
DALDP +R
Sbjct 307 DALDPKAR 314
>gi|227874799|ref|ZP_03992952.1| dipeptide ABC superfamily ATP binding cassette transporter, membrane
protein DppC [Mobiluncus mulieris ATCC 35243]
gi|306818091|ref|ZP_07451822.1| dipeptide ABC superfamily ATP binding cassette transporter, membrane
protein DppC [Mobiluncus mulieris ATCC 35239]
gi|227844574|gb|EEJ54730.1| dipeptide ABC superfamily ATP binding cassette transporter, membrane
protein DppC [Mobiluncus mulieris ATCC 35243]
gi|304649055|gb|EFM46349.1| dipeptide ABC superfamily ATP binding cassette transporter, membrane
protein DppC [Mobiluncus mulieris ATCC 35239]
Length=340
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 149/253 (59%), Positives = 198/253 (79%), Gaps = 1/253 (0%)
Query 11 LVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGA 70
+V+AAFP LFT DP + + S S P A H FG D QG DI++RT++GARASV VGL
Sbjct 86 IVMAAFPQLFTRIDPNFCELSNSYAPPKAGHPFGYDRQGCDIFARTIHGARASVIVGLLT 145
Query 71 TLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH-HRTVWTVIA 129
T V ++GGA G LAGF+G ++DA +SR+ D+ +P +LAAIV+MQ+ +RTV+TV+
Sbjct 146 TFMVVIIGGAFGTLAGFFGGFVDAFLSRIIDIIFAVPFILAAIVVMQMFRDNRTVFTVVL 205
Query 130 ILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVA 189
+LA+FGWP +ARI RGAV++ + ++V AAKALG N+++I+LRH +PNA+ P+I ATVA
Sbjct 206 VLAVFGWPSIARITRGAVMQTKNEEFVTAAKALGENKWKIILRHIVPNAIAPMIVYATVA 265
Query 190 LGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMM 249
LG FIV+EATLS+LGVGLP++VVSWGGDI+ AQT LR +LFYPAGALA+TVL+F+MM
Sbjct 266 LGTFIVSEATLSFLGVGLPSNVVSWGGDISRAQTALRQAPQVLFYPAGALALTVLSFIMM 325
Query 250 GDALRDALDPASR 262
GD +RDALDP +R
Sbjct 326 GDVVRDALDPKAR 338
>gi|269976782|ref|ZP_06183757.1| oligopeptide ABC transporter, permease protein OppC [Mobiluncus
mulieris 28-1]
gi|307700667|ref|ZP_07637695.1| putative oligopeptide ABC transporter, permease protein OppC
[Mobiluncus mulieris FB024-16]
gi|269934979|gb|EEZ91538.1| oligopeptide ABC transporter, permease protein OppC [Mobiluncus
mulieris 28-1]
gi|307614197|gb|EFN93438.1| putative oligopeptide ABC transporter, permease protein OppC
[Mobiluncus mulieris FB024-16]
Length=325
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/253 (59%), Positives = 198/253 (79%), Gaps = 1/253 (0%)
Query 11 LVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGA 70
+V+AAFP LFT DP + + S S P A H FG D QG DI++RT++GARASV VGL
Sbjct 71 IVMAAFPQLFTRIDPNFCELSNSYAPPKAGHPFGYDRQGCDIFARTIHGARASVIVGLLT 130
Query 71 TLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH-HRTVWTVIA 129
T V ++GGA G LAGF+G ++DA +SR+ D+ +P +LAAIV+MQ+ +RTV+TV+
Sbjct 131 TFMVVIIGGAFGTLAGFFGGFVDAFLSRIIDIIFAVPFILAAIVVMQMFRDNRTVFTVVL 190
Query 130 ILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVA 189
+LA+FGWP +ARI RGAV++ + ++V AAKALG N+++I+LRH +PNA+ P+I ATVA
Sbjct 191 VLAVFGWPSIARITRGAVMQTKNEEFVTAAKALGENKWKIILRHIVPNAIAPMIVYATVA 250
Query 190 LGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMM 249
LG FIV+EATLS+LGVGLP++VVSWGGDI+ AQT LR +LFYPAGALA+TVL+F+MM
Sbjct 251 LGTFIVSEATLSFLGVGLPSNVVSWGGDISRAQTALRQAPQVLFYPAGALALTVLSFIMM 310
Query 250 GDALRDALDPASR 262
GD +RDALDP +R
Sbjct 311 GDVVRDALDPKAR 323
>gi|317506677|ref|ZP_07964465.1| inner membrane transporter [Segniliparus rugosus ATCC BAA-974]
gi|316255027|gb|EFV14309.1| inner membrane transporter [Segniliparus rugosus ATCC BAA-974]
Length=304
Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 147/261 (57%), Positives = 196/261 (76%), Gaps = 0/261 (0%)
Query 2 IAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGAR 61
IA A ++L+ +VA P LFT +DP D QS P H FG DLQG D++SRTV+GA
Sbjct 42 IALAALVLVFLVALAPGLFTGSDPRDCDLGQSQAPPGPGHPFGFDLQGCDVFSRTVHGAG 101
Query 62 ASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHH 121
ASV VG+G + VF++G G +AG+ G +D+++SR ++F G+PL+LAA+VL+++M
Sbjct 102 ASVAVGVGTAIGVFLIGSVAGVIAGYAGGLVDSLISRAIEIFAGIPLILAAVVLLKLMPE 161
Query 122 RTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGP 181
R VWTV+ IL FGWPQ+ARIARGA +E+R+ D+V AA+ALG+ + +LRH +PN + P
Sbjct 162 RNVWTVVVILTAFGWPQIARIARGATVEIRSRDFVTAARALGVTHPRTVLRHIVPNVLAP 221
Query 182 VIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAI 241
VI T+ LG+FIV EATLSYLG+GLP SVVSWGGDIN +Q RL GSP++FYPA AL +
Sbjct 222 VIVTTTITLGVFIVAEATLSYLGIGLPPSVVSWGGDINTSQGRLLEGSPVMFYPAAALGV 281
Query 242 TVLAFMMMGDALRDALDPASR 262
TVLAF+++GDALRDALDP +R
Sbjct 282 TVLAFILLGDALRDALDPKAR 302
>gi|213965411|ref|ZP_03393607.1| oligopeptide transport system permease protein OppC [Corynebacterium
amycolatum SK46]
gi|213952027|gb|EEB63413.1| oligopeptide transport system permease protein OppC [Corynebacterium
amycolatum SK46]
Length=322
Score = 305 bits (780), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 151/261 (58%), Positives = 197/261 (76%), Gaps = 0/261 (0%)
Query 2 IAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGAR 61
++A +ILL + VAAFPSLFT+ DP+ A+ S+ H G QG+D+Y+R +YGAR
Sbjct 60 VSAVIILLSIAVAAFPSLFTSVDPSAANLRDSLAPARDGHPMGFTQQGYDVYARVIYGAR 119
Query 62 ASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHH 121
ASV VG+G TLAV VVG LGA+AG+ G W+DAV+SR+TD+F +PL+LA IVLMQ+
Sbjct 120 ASVIVGIGVTLAVTVVGIILGAIAGYLGGWVDAVLSRITDMFFAIPLILAGIVLMQLFTE 179
Query 122 RTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGP 181
RT+W+V+ +LA FGWPQ+AR+ R +V+ V+ +YV A+KALGL+ IL RH LPN + P
Sbjct 180 RTIWSVVFVLAAFGWPQMARVVRSSVISVKNEEYVTASKALGLSNTGILFRHVLPNCLAP 239
Query 182 VIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAI 241
VI +AT +LGI+IV EATLSYLG+GLPT+ VSWG DI+VAQ LR LF+PA ALAI
Sbjct 240 VIVMATTSLGIYIVAEATLSYLGIGLPTTTVSWGNDISVAQQVLRQAPSNLFWPALALAI 299
Query 242 TVLAFMMMGDALRDALDPASR 262
TVL F++MGDAL+D+LDP R
Sbjct 300 TVLGFILMGDALKDSLDPKER 320
>gi|340793518|ref|YP_004758981.1| hypothetical protein CVAR_0558 [Corynebacterium variabile DSM
44702]
gi|340533428|gb|AEK35908.1| putative membrane protein [Corynebacterium variabile DSM 44702]
Length=266
Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 146/261 (56%), Positives = 194/261 (75%), Gaps = 0/261 (0%)
Query 2 IAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGAR 61
++ +I L L+VA FP LF+ DP A+ S+ + H FG QG+D+Y+RT+YGAR
Sbjct 4 VSVVIIALFLLVALFPGLFSGTDPRAANLEDSLEGARSGHPFGFTQQGYDVYARTIYGAR 63
Query 62 ASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHH 121
AS+ G+ TLAV V+G +GA+AG++G W+DAV+SR+TD+F +PLLLA IVLMQ
Sbjct 64 ASIATGVLTTLAVTVLGIIVGAVAGYFGGWVDAVLSRLTDIFFAIPLLLAGIVLMQAFDV 123
Query 122 RTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGP 181
RT WTV+ +L+LFGWPQ+AR+ RGAV++ + +DYV A++ALGL+R IL++H LPN + P
Sbjct 124 RTTWTVVLVLSLFGWPQMARMVRGAVMQTKNNDYVQASRALGLSRTGILVKHILPNCLAP 183
Query 182 VIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAI 241
+I + T LGI+IV EATLSYLG+GLP VSWG DI+ AQ+ LR ILFYPAGALAI
Sbjct 184 IIVMTTTNLGIYIVAEATLSYLGIGLPPETVSWGNDISTAQSTLRVAPEILFYPAGALAI 243
Query 242 TVLAFMMMGDALRDALDPASR 262
TVL FM++GD L+DALDP R
Sbjct 244 TVLGFMLLGDTLKDALDPKER 264
>gi|269795898|ref|YP_003315353.1| peptide ABC transporter permease [Sanguibacter keddieii DSM 10542]
gi|269098083|gb|ACZ22519.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease
component [Sanguibacter keddieii DSM 10542]
Length=331
Score = 302 bits (773), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 151/248 (61%), Positives = 190/248 (77%), Gaps = 1/248 (0%)
Query 16 FPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVF 75
FP LFT+ DP + + S+ P A H FG D QG D+YSR +YGARASV+VG+ T+ V
Sbjct 82 FPGLFTSVDPRFCELRNSLGNPQAGHPFGFDRQGCDVYSRVIYGARASVSVGVLTTIGVV 141
Query 76 VVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHH-RTVWTVIAILALF 134
++GG +GALAGFYG W D+V+SRVTD+F +PL+LAAIVL QV RTV V+A+L +F
Sbjct 142 LLGGLMGALAGFYGRWFDSVLSRVTDIFFAIPLVLAAIVLGQVFTEGRTVLNVVAVLTVF 201
Query 135 GWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVALGIFI 194
GWPQVARI RGAV+ V+ +DYV A+KALG +R IL RH LPNA P+I VATV+LG FI
Sbjct 202 GWPQVARITRGAVMSVKNNDYVTASKALGASRLSILGRHVLPNAAAPIIVVATVSLGTFI 261
Query 195 VTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALR 254
V EATLS+LG+GLP SV+SWG DI AQ+ LR+ +L YP+ ALA+TVL+F+MMGDA+R
Sbjct 262 VAEATLSFLGLGLPQSVLSWGHDIATAQSSLRTNPSVLLYPSVALALTVLSFIMMGDAVR 321
Query 255 DALDPASR 262
DALDP +R
Sbjct 322 DALDPKAR 329
>gi|237784726|ref|YP_002905431.1| ABC transporter permease [Corynebacterium kroppenstedtii DSM
44385]
gi|237757638|gb|ACR16888.1| ABC-type transport system, permease protein [Corynebacterium
kroppenstedtii DSM 44385]
Length=361
Score = 301 bits (771), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 147/261 (57%), Positives = 200/261 (77%), Gaps = 0/261 (0%)
Query 2 IAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGAR 61
++ +IL +L+V FP LFT+ DP AD S+S+ P A+H FG QG+D+YSRT+YGAR
Sbjct 98 VSMVIILAVLLVTFFPGLFTSTDPKTADLSKSLEGPEASHPFGFTRQGYDVYSRTLYGAR 157
Query 62 ASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHH 121
ASV G+ T+ + ++G +G++AG+ G W+DAV+SR+TD+F +PL+LA IVLMQ+
Sbjct 158 ASVVTGVSVTVVITILGTIIGSVAGYVGGWLDAVLSRLTDIFFAIPLILAGIVLMQLFSE 217
Query 122 RTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGP 181
R TVI +L+ FGWPQ+ARI RGAV+ V+ +DYV+A++ALGL++++ILLRH +PN + P
Sbjct 218 RNTLTVILVLSAFGWPQMARIVRGAVMTVKNNDYVMASRALGLSQWKILLRHIIPNCLAP 277
Query 182 VIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAI 241
+I +AT +LGI+IV EATLSYLG+GLP VSWG DI+ AQ LR+ LFYPAGALAI
Sbjct 278 IIVMATTSLGIYIVAEATLSYLGIGLPPQTVSWGNDISTAQNTLRAAPSTLFYPAGALAI 337
Query 242 TVLAFMMMGDALRDALDPASR 262
TVL F+M+GDAL+DALDP R
Sbjct 338 TVLGFIMLGDALKDALDPKER 358
>gi|296393541|ref|YP_003658425.1| binding-protein-dependent transporter inner membrane component
[Segniliparus rotundus DSM 44985]
gi|296180688|gb|ADG97594.1| binding-protein-dependent transport systems inner membrane component
[Segniliparus rotundus DSM 44985]
Length=303
Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 151/261 (58%), Positives = 202/261 (78%), Gaps = 0/261 (0%)
Query 2 IAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGAR 61
++AA++L +L + A P F+ DP D QS PSAAH FG D QG DIYSRTV+GAR
Sbjct 41 VSAAVLLFVLALVAAPDFFSGTDPRSCDLEQSKSPPSAAHPFGVDFQGCDIYSRTVHGAR 100
Query 62 ASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHH 121
ASV VG+G LAVF+VGG +G LAG++G W D V+SR +++F G+PL+LAA+VL++++
Sbjct 101 ASVEVGVGTALAVFLVGGFVGVLAGYFGGWADGVLSRASEIFAGVPLILAAVVLLKILPQ 160
Query 122 RTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGP 181
R V+T+IAILA+F WPQ+AR+AR A R+ DYVLAA++LG++ +ILLRH LPN++GP
Sbjct 161 RGVFTIIAILAVFSWPQIARVARAAAAMARSKDYVLAARSLGVSTPKILLRHILPNSLGP 220
Query 182 VIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAI 241
+IA T++LG+FIV E+TLSY+G+GLP SVVSWG DI+ Q RL GS ++FYPA AL
Sbjct 221 IIATTTISLGVFIVAESTLSYMGIGLPPSVVSWGADISSGQARLLEGSAMMFYPAAALGT 280
Query 242 TVLAFMMMGDALRDALDPASR 262
TVLAF+++GDALRDA DP +R
Sbjct 281 TVLAFILLGDALRDATDPKAR 301
>gi|296118078|ref|ZP_06836660.1| oligopeptide ABC transporter, permease protein OppC [Corynebacterium
ammoniagenes DSM 20306]
gi|295968964|gb|EFG82207.1| oligopeptide ABC transporter, permease protein OppC [Corynebacterium
ammoniagenes DSM 20306]
Length=332
Score = 298 bits (762), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 146/262 (56%), Positives = 199/262 (76%), Gaps = 1/262 (0%)
Query 2 IAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGAR 61
+A+ +IL+ L++A FPSLFT+ DP D +S+ A H FG D QG DIYSR +YGAR
Sbjct 69 VASVMILIALLLAIFPSLFTSVDPRACDLGRSLNPSEAGHIFGFDRQGCDIYSRVIYGAR 128
Query 62 ASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVM-H 120
ASV VG+ T V VVG +G++AGF+G W+D ++SR+TD+F +PL+LAAIV+MQ+
Sbjct 129 ASVLVGVLTTALVTVVGALIGSIAGFFGGWVDTILSRITDIFFAIPLVLAAIVVMQMFKE 188
Query 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
+RT+ TV+ +L LFGW +ARI RGAV+ ++ ++V AA+++G +R++IL H LPNA
Sbjct 189 YRTIVTVVLVLGLFGWVSIARITRGAVMSIKNEEFVQAARSIGASRWRILFSHVLPNAAA 248
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
P+I+ ATVALG FIV EATLS+LG+GLP ++VSWGGDI+ AQ LR +LFYPAGALA
Sbjct 249 PIISYATVALGTFIVAEATLSFLGIGLPPTIVSWGGDISQAQASLRQQPLVLFYPAGALA 308
Query 241 ITVLAFMMMGDALRDALDPASR 262
+TVL+F+MMGD +RDALDP +R
Sbjct 309 LTVLSFIMMGDVVRDALDPKAR 330
>gi|154508414|ref|ZP_02044056.1| hypothetical protein ACTODO_00911 [Actinomyces odontolyticus
ATCC 17982]
gi|293194677|ref|ZP_06610045.1| oligopeptide ABC transporter, permease protein OppC [Actinomyces
odontolyticus F0309]
gi|153798048|gb|EDN80468.1| hypothetical protein ACTODO_00911 [Actinomyces odontolyticus
ATCC 17982]
gi|292819656|gb|EFF78675.1| oligopeptide ABC transporter, permease protein OppC [Actinomyces
odontolyticus F0309]
Length=322
Score = 298 bits (762), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 144/247 (59%), Positives = 192/247 (78%), Gaps = 1/247 (0%)
Query 17 PSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVFV 76
PSLFTA DP + + S S+ PSA H FG D QG DIY+R VYGARASV+VG+ TLAV +
Sbjct 75 PSLFTATDPKFCELSSSLAGPSAGHPFGFDKQGCDIYARVVYGARASVSVGILTTLAVVL 134
Query 77 VGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH-HRTVWTVIAILALFG 135
+GG +GALAG++G W DA++SR+TDVF +PLLLAAIV MQ+ R++ V+ +L++FG
Sbjct 135 IGGTIGALAGYFGGWFDALLSRITDVFFAIPLLLAAIVFMQMFKGSRSIAMVVIVLSMFG 194
Query 136 WPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVALGIFIV 195
W +ARI RG+VL + ++V AA+A G +R +ILL H +PN++ P+I ATVALG FIV
Sbjct 195 WTSIARITRGSVLSAKNEEFVTAARATGASRARILLSHIIPNSMAPIIVYATVALGTFIV 254
Query 196 TEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALRD 255
+EA+LS++G+GLPTSVVSWG DI+ AQT LR+ +LFYP ALA+TVL+F+MMGDA+R+
Sbjct 255 SEASLSFMGIGLPTSVVSWGADISSAQTSLRTNPMVLFYPGAALALTVLSFIMMGDAVRE 314
Query 256 ALDPASR 262
ALDP +R
Sbjct 315 ALDPKAR 321
>gi|325964028|ref|YP_004241934.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease
[Arthrobacter phenanthrenivorans Sphe3]
gi|323470115|gb|ADX73800.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease
component [Arthrobacter phenanthrenivorans Sphe3]
Length=316
Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/266 (55%), Positives = 201/266 (76%), Gaps = 4/266 (1%)
Query 1 VIAAALILLILVVAAFPSLFTAADPT-YADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYG 59
+++A +IL+IL+VA FP LFT P + S APSA H FG QG D+Y+R +YG
Sbjct 49 IVSAVMILVILIVAFFPGLFTQTAPNDNCQLANSDGAPSAGHPFGFTFQGCDVYARVIYG 108
Query 60 ARASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQV- 118
+ASV VG+ A + V +VG LGALAGFYG WIDAV++R+ D+F LPL+L A+V+ Q+
Sbjct 109 TQASVMVGVFAVIGVLLVGVTLGALAGFYGGWIDAVIARLGDIFFALPLVLGALVVTQLP 168
Query 119 --MHHRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALP 176
+++VWTVI I+ L WPQ+AR+ RGAV+EVR +D++ AA++LG++R Q L+RH LP
Sbjct 169 FFRENKSVWTVIMIIVLLAWPQMARLTRGAVIEVRNADFITAARSLGVSRIQTLIRHVLP 228
Query 177 NAVGPVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPA 236
NA+ P+I +AT+ LG+FIV EATLS+LG+GLP S++SWG DI+ AQ+ +R+ +L YPA
Sbjct 229 NALAPIIVLATMELGVFIVLEATLSFLGIGLPGSIMSWGNDISAAQSSIRTNPAVLLYPA 288
Query 237 GALAITVLAFMMMGDALRDALDPASR 262
AL+ITVL+F+M+GDALRDALDP SR
Sbjct 289 AALSITVLSFIMLGDALRDALDPKSR 314
>gi|308176766|ref|YP_003916172.1| dipeptide/oligopeptide ABC transporter inner membrane subunit
[Arthrobacter arilaitensis Re117]
gi|307744229|emb|CBT75201.1| dipeptide/oligopeptide ABC transporter, inner membrane subunit
[Arthrobacter arilaitensis Re117]
Length=340
Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 144/269 (54%), Positives = 203/269 (76%), Gaps = 6/269 (2%)
Query 1 VIAAALILLILVVAAFPSLFTAADPTYADP---SQSMLAPSAAHWFGTDLQGHDIYSRTV 57
+I+ +IL +++VAAFP LFT+ DP S A H+ G +LQG DIY+RT+
Sbjct 70 IISTVMILAVVIVAAFPQLFTSIDPNGNQACLLENSNEPGRAGHFMGFNLQGCDIYARTI 129
Query 58 YGARASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQ 117
YG RAS+ VGL T+ V ++GGA+GALAG+YG WID +++R+ D+F LPL+L AI++MQ
Sbjct 130 YGTRASLLVGLFTTIIVVLLGGAIGALAGYYGGWIDIILARLGDIFFALPLILGAIIVMQ 189
Query 118 V---MHHRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHA 174
+ +R+VWTVI L++FGWPQ+ARI RGAV+E R +D+V A++ALGL++F L++H
Sbjct 190 LPAFRENRSVWTVIVTLSIFGWPQLARITRGAVIEARNADFVKASRALGLSKFSALVKHV 249
Query 175 LPNAVGPVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFY 234
+PN++ P+I VATV LG++IV EATLS+LGVGLP V+SWG DI+ AQT+LR+ +L +
Sbjct 250 IPNSLAPIIVVATVNLGVYIVAEATLSFLGVGLPPDVMSWGNDISSAQTQLRNNPTMLMW 309
Query 235 PAGALAITVLAFMMMGDALRDALDPASRA 263
PA L+ITVL+F+M+GDA+RDALDP +R
Sbjct 310 PALFLSITVLSFIMLGDAVRDALDPKARK 338
>gi|227487768|ref|ZP_03918084.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Corynebacterium glucuronolyticum ATCC 51867]
gi|227542411|ref|ZP_03972460.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Corynebacterium glucuronolyticum ATCC 51866]
gi|227092270|gb|EEI27582.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Corynebacterium glucuronolyticum ATCC 51867]
gi|227181609|gb|EEI62581.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Corynebacterium glucuronolyticum ATCC 51866]
Length=368
Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 144/261 (56%), Positives = 197/261 (76%), Gaps = 1/261 (0%)
Query 3 AAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARA 62
+A LIL +++A FP +FT+ DP + + S S+ P + H FG D QG DIYSR +YGARA
Sbjct 105 SAVLILCAVLLALFPQMFTSTDPRFCELSNSLAGPESGHPFGFDRQGCDIYSRVIYGARA 164
Query 63 SVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVM-HH 121
SVTVG+ T+AV ++G +G++AG++G D + SR+TD+F +PL+LAAIV+MQ+
Sbjct 165 SVTVGILTTVAVTILGTIIGSIAGYFGGIWDTIFSRLTDIFFAVPLVLAAIVVMQMFKEQ 224
Query 122 RTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGP 181
RT+WTV+ L++FGW +ARI RGAV+ V+ ++V AA+A+G ++F IL H LPNA P
Sbjct 225 RTIWTVVIALSIFGWTNIARITRGAVMSVKNEEFVTAARAVGASKFTILTSHILPNAAAP 284
Query 182 VIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAI 241
+I ATVALG FIV EATLS+LG+GLP++VVSWGGDI+ AQ LR+ +LFYPA ALA+
Sbjct 285 IIVYATVALGTFIVAEATLSFLGIGLPSTVVSWGGDISAAQASLRTQPMVLFYPAIALAL 344
Query 242 TVLAFMMMGDALRDALDPASR 262
TVL+F+MMGD +RDALDP +R
Sbjct 345 TVLSFIMMGDVVRDALDPKAR 365
>gi|315605335|ref|ZP_07880378.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Actinomyces sp. oral taxon 180 str. F0310]
gi|315312904|gb|EFU60978.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Actinomyces sp. oral taxon 180 str. F0310]
Length=322
Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 144/262 (55%), Positives = 200/262 (77%), Gaps = 1/262 (0%)
Query 2 IAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGAR 61
IAA +I ++A FP LFT+ DP + + S S+ P++ H FG D QG DIY+R VYGAR
Sbjct 60 IAAFIITCAALLAIFPWLFTSTDPKFCELSSSLAGPTSGHPFGFDKQGCDIYARVVYGAR 119
Query 62 ASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH- 120
ASV+VG+ T+AV ++GG +GALAG++G W DA++SR+TDVF +PLLLAAIV MQ+
Sbjct 120 ASVSVGILTTIAVSLIGGTIGALAGYFGGWFDALLSRITDVFFAIPLLLAAIVFMQMFKG 179
Query 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
R++ V+ +L++FGW +ARI RG+VL + ++V AA+A G +R +IL+ H +PN++
Sbjct 180 SRSIAMVVVVLSMFGWTSIARITRGSVLSAKNEEFVTAARATGASRARILMTHIIPNSMA 239
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
P+I ATVALG FIV+EA+LS++G+GLP SVVSWG DI+ AQT LR+ +LFYPA ALA
Sbjct 240 PIIVYATVALGTFIVSEASLSFMGIGLPPSVVSWGADISAAQTALRTNPMVLFYPASALA 299
Query 241 ITVLAFMMMGDALRDALDPASR 262
+TVL+F+MMGDA+R+ALDP +R
Sbjct 300 LTVLSFIMMGDAVREALDPKAR 321
>gi|116671366|ref|YP_832299.1| binding-protein-dependent transport systems inner membrane component
[Arthrobacter sp. FB24]
gi|116611475|gb|ABK04199.1| binding-protein-dependent transport systems inner membrane component
[Arthrobacter sp. FB24]
Length=330
Score = 295 bits (754), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 143/267 (54%), Positives = 200/267 (75%), Gaps = 5/267 (1%)
Query 1 VIAAALILLILVVAAFPSLFTAADPTY--ADPSQSMLAPSAAHWFGTDLQGHDIYSRTVY 58
+I+A LIL+++ V+ FPSLF+ DP + S P+A H G QG D+Y+R ++
Sbjct 62 LISAFLILVVVAVSLFPSLFSGIDPASEACQLANSDAGPAAGHPLGFTQQGCDVYARVIF 121
Query 59 GARASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQV 118
G R+SVTVGL T+ V ++GG +GALAG+YG W+D++++R+ D+F LPL+L AIV+MQ+
Sbjct 122 GTRSSVTVGLFTTIGVLLIGGIMGALAGYYGGWVDSILARINDIFFALPLILGAIVMMQL 181
Query 119 ---MHHRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHAL 175
+RT WT++ IL FGWPQ+ARI RGAV+EVR +D+V AA++LG+++F L+RH +
Sbjct 182 PVFRANRTAWTLVLILVTFGWPQIARITRGAVIEVRNADFVTAARSLGVSKFGALMRHVM 241
Query 176 PNAVGPVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYP 235
PN++ P+I VAT++LG FIV E+TLS+LG+GLP SV+SWG DI AQ LRS L YP
Sbjct 242 PNSLAPIIVVATISLGTFIVAESTLSFLGIGLPPSVMSWGNDIQAAQASLRSNPMPLLYP 301
Query 236 AGALAITVLAFMMMGDALRDALDPASR 262
A AL+ITVL+F+M+GDALRDALDP +R
Sbjct 302 AIALSITVLSFIMLGDALRDALDPKAR 328
>gi|334336455|ref|YP_004541607.1| ABC-type transporter, integral membrane subunit [Isoptericola
variabilis 225]
gi|334106823|gb|AEG43713.1| ABC-type transporter, integral membrane subunit [Isoptericola
variabilis 225]
Length=324
Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 146/247 (60%), Positives = 184/247 (75%), Gaps = 0/247 (0%)
Query 16 FPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVF 75
FP LFT+ P +QS+ P H FG D QG DIY+RTVYGARASV VG+ AT V
Sbjct 76 FPGLFTSLGPRQCTLAQSLAGPQPGHPFGFDFQGCDIYARTVYGARASVVVGVLATGLVI 135
Query 76 VVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRTVWTVIAILALFG 135
++G A+GA+AG+YG W D ++SR+TDVF +PL+LAAIV+M VM RT +TV +LALFG
Sbjct 136 ILGTAIGAIAGYYGGWFDTILSRITDVFFAVPLVLAAIVIMSVMPQRTSFTVALVLALFG 195
Query 136 WPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVALGIFIV 195
W +ARI RG V+ V+ +++V AAK+LG+ R IL++H LPNA P+I ATVALG FIV
Sbjct 196 WTSIARITRGTVMSVKNNEFVTAAKSLGMGRAAILVKHVLPNAAAPIIVYATVALGTFIV 255
Query 196 TEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALRD 255
EATLS+LG+GLP +VVSWGGDI+ AQ +R ILFYPAG LA+TVL F+MMGD +RD
Sbjct 256 AEATLSFLGIGLPPNVVSWGGDISAAQRSIRVAPEILFYPAGGLALTVLGFIMMGDVVRD 315
Query 256 ALDPASR 262
ALDP +R
Sbjct 316 ALDPKAR 322
>gi|227505661|ref|ZP_03935710.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Corynebacterium striatum ATCC 6940]
gi|227197735|gb|EEI77783.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Corynebacterium striatum ATCC 6940]
Length=319
Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 141/262 (54%), Positives = 197/262 (76%), Gaps = 1/262 (0%)
Query 2 IAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGAR 61
+AA +I++ +++A FP LFT DP + S+S+ + H FG + QG DIY+R +YGAR
Sbjct 56 VAATMIVIAVLLALFPGLFTNTDPRMCELSKSLAPAESGHPFGFNRQGCDIYARVIYGAR 115
Query 62 ASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVM-H 120
ASVTVG+ T+ V ++G +GA+AGF+G WID+V+SR+TD+F +PL+LAAIV+MQ+
Sbjct 116 ASVTVGVLTTILVVIIGALVGAVAGFFGGWIDSVLSRITDIFFAIPLVLAAIVVMQMFKE 175
Query 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
HRT+ TV+ +L LFGW +ARI RGAV+ ++ +YV +A+++G + IL H LPNA
Sbjct 176 HRTIITVVLVLGLFGWVSIARITRGAVVSIKNEEYVQSARSIGASNIHILFSHILPNAAA 235
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
P+I+ ATVALG +IV EATLS+LG+GLP++ VSWGGDI+ AQ LR +LFYPAGAL
Sbjct 236 PIISYATVALGTYIVAEATLSFLGIGLPSTFVSWGGDISDAQASLRVNPAVLFYPAGALG 295
Query 241 ITVLAFMMMGDALRDALDPASR 262
+TVL+F+MMGD +RDALDP +R
Sbjct 296 LTVLSFIMMGDVVRDALDPKAR 317
>gi|334564086|ref|ZP_08517077.1| ABC transporter permease [Corynebacterium bovis DSM 20582]
Length=273
Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 143/246 (59%), Positives = 185/246 (76%), Gaps = 0/246 (0%)
Query 17 PSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVFV 76
P LF DP AD S+ + H FG QG+D+Y+RTVYGARASV G+ T+A+ V
Sbjct 26 PGLFAHTDPRAADLHDSLEPARSGHPFGFTQQGYDVYARTVYGARASVVTGVLTTVAITV 85
Query 77 VGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRTVWTVIAILALFGW 136
+G +GA+AG+ G W+DAV+SRVTD+F +PLLLA IVLMQ+ RT WTV+ +L+ FGW
Sbjct 86 LGVLVGAVAGYLGGWVDAVLSRVTDIFFAIPLLLAGIVLMQMFTVRTTWTVVLVLSAFGW 145
Query 137 PQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVALGIFIVT 196
PQ+ARI RGAVL + +DYVLA++ALGL+R +IL RH LPN + P+I +AT +LGI+IV
Sbjct 146 PQMARIVRGAVLSAKTNDYVLASRALGLSRTRILTRHILPNCLAPIIVMATTSLGIYIVA 205
Query 197 EATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALRDA 256
EATLSYLG+GLP + VSWG DI+ AQ+ LR ILFYPAGALA+TVL F+++GD L+D+
Sbjct 206 EATLSYLGIGLPPTTVSWGNDISTAQSTLRIAPQILFYPAGALAVTVLGFILLGDTLKDS 265
Query 257 LDPASR 262
LDP R
Sbjct 266 LDPKER 271
>gi|294787038|ref|ZP_06752292.1| oligopeptide ABC transporter, permease protein OppC [Parascardovia
denticolens F0305]
gi|315226685|ref|ZP_07868473.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Parascardovia denticolens DSM 10105]
gi|294485871|gb|EFG33505.1| oligopeptide ABC transporter, permease protein OppC [Parascardovia
denticolens F0305]
gi|315120817|gb|EFT83949.1| oligopeptide ABC superfamily ATP binding cassette transporter,
membrane protein [Parascardovia denticolens DSM 10105]
Length=355
Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 149/263 (57%), Positives = 194/263 (74%), Gaps = 2/263 (0%)
Query 2 IAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGAR 61
I+ ALIL I+VVA FP LFT DP Y + S+ A H FG DLQG DIY+R +YG R
Sbjct 91 ISTALILFIVVVALFPRLFTHTDPIYCELGNSLQPARAGHPFGFDLQGCDIYARVIYGTR 150
Query 62 ASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHH 121
SV++G+ ATL V ++GG +GALAGF+G W+DA++SRVTDVF +PLLL AIV++Q+ +
Sbjct 151 TSVSIGVLATLLVVLIGGVIGALAGFFGGWVDALLSRVTDVFFAIPLLLGAIVVLQMFKN 210
Query 122 R-TVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
++W +I ++A+FGW VARIARGAV+E + ++ AA ALG +R + L+ H +PNA+
Sbjct 211 NGSIWKIILVMAIFGWVSVARIARGAVMEAKNLEFNTAATALGSSRTRNLVHHIIPNALA 270
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPI-LFYPAGAL 239
PVI V T +LG +IV EATLS+LG+GLP S VSWG DI AQ L + + I L YP+ AL
Sbjct 271 PVIVVGTTSLGTYIVLEATLSFLGLGLPISTVSWGADIATAQQLLSTSNAIVLVYPSAAL 330
Query 240 AITVLAFMMMGDALRDALDPASR 262
AITVLAF+MMGDA+RDALDP SR
Sbjct 331 AITVLAFIMMGDAVRDALDPKSR 353
>gi|25028442|ref|NP_738496.1| putative peptide ABC transporter permease protein [Corynebacterium
efficiens YS-314]
gi|259507501|ref|ZP_05750401.1| dipeptide/oligopeptide ABC superfamily ATP binding cassette transporter,
permease protein [Corynebacterium efficiens YS-314]
gi|23493727|dbj|BAC18696.1| putative peptide ABC transporter permease protein [Corynebacterium
efficiens YS-314]
gi|259164886|gb|EEW49440.1| dipeptide/oligopeptide ABC superfamily ATP binding cassette transporter,
permease protein [Corynebacterium efficiens YS-314]
Length=345
Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 145/247 (59%), Positives = 185/247 (75%), Gaps = 1/247 (0%)
Query 17 PSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARASVTVGLGATLAVFV 76
P LFT+ DP Y + S+ P + H FG D QG DI++RTVYGARASV VG+ TL V V
Sbjct 97 PQLFTSTDPQYCVLANSLDGPRSGHPFGFDRQGCDIFARTVYGARASVAVGVLTTLLVVV 156
Query 77 VGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVM-HHRTVWTVIAILALFG 135
+G GALAGF+G W+D ++SRVTD+F +PL+LAAIV+MQ+ HRT+ TV+ +L LFG
Sbjct 157 IGTVFGALAGFFGGWVDTILSRVTDMFFAIPLVLAAIVVMQMFKEHRTIVTVVLVLGLFG 216
Query 136 WPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGPVIAVATVALGIFIV 195
W +ARI RGAVL V+ +YV +A+ALG ++ + LL H +PNA P+I ATVALG FIV
Sbjct 217 WTNIARITRGAVLSVKNEEYVTSARALGASKVKQLLSHIMPNAAAPIIVYATVALGTFIV 276
Query 196 TEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALRD 255
EATLS+LG+GLP S+VSWG DI AQT LR+ +LFYPA ALA+TVL+F+MMGD +RD
Sbjct 277 AEATLSFLGIGLPPSIVSWGADIAKAQTSLRTQPMVLFYPAMALALTVLSFIMMGDVVRD 336
Query 256 ALDPASR 262
ALDP +R
Sbjct 337 ALDPKAR 343
>gi|38233554|ref|NP_939321.1| putative peptide transport system membrane protein [Corynebacterium
diphtheriae NCTC 13129]
gi|38199814|emb|CAE49477.1| Putative peptide transport system membrane protein [Corynebacterium
diphtheriae]
Length=317
Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 144/262 (55%), Positives = 197/262 (76%), Gaps = 1/262 (0%)
Query 2 IAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGAR 61
++AALI L L++A P LFT+ DP + + +S+ P+ H FG D QG DIYSR +YGAR
Sbjct 54 VSAALIFLALLMAIVPQLFTSTDPQFCELGKSLAKPAPGHPFGFDRQGCDIYSRMIYGAR 113
Query 62 ASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHH 121
ASV VG+ T+AV ++G A+G+ AG+ G ++D ++SR+TD+F +PL+LAAIV+MQ+
Sbjct 114 ASVAVGVLTTIAVVLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVPLVLAAIVVMQMFKE 173
Query 122 -RTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
R++ TV+ +LALFGW +ARI RGAVL + ++V AA+A+G ++++IL H LPN+
Sbjct 174 SRSIITVVVVLALFGWTNIARITRGAVLSTKNEEFVTAARAVGASKWRILTTHVLPNSAA 233
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
P+I ATVALG FIV EATLS+LG+GLP S+VSWGGDI AQ LR+ +LFYPA AL
Sbjct 234 PIIVYATVALGTFIVAEATLSFLGIGLPPSIVSWGGDIAKAQASLRTQPMVLFYPAVALG 293
Query 241 ITVLAFMMMGDALRDALDPASR 262
+TVL+F+MMGDA+RDALDP SR
Sbjct 294 LTVLSFIMMGDAVRDALDPKSR 315
>gi|227548449|ref|ZP_03978498.1| dipeptide ABC superfamily ATP binding cassette transporter, membrane
protein DppC [Corynebacterium lipophiloflavum DSM 44291]
gi|227079493|gb|EEI17456.1| dipeptide ABC superfamily ATP binding cassette transporter, membrane
protein DppC [Corynebacterium lipophiloflavum DSM 44291]
Length=321
Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 149/262 (57%), Positives = 198/262 (76%), Gaps = 1/262 (0%)
Query 2 IAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGAR 61
++A LIL+ L +A PSLFT+ DP S+S+ P + H FG D QG DIYSRT+YGAR
Sbjct 58 VSALLILVALAMALVPSLFTSVDPRECMLSRSLGGPESGHPFGFDRQGCDIYSRTIYGAR 117
Query 62 ASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHH 121
ASVTVG+ TL V +VG +GA+AGFYG D ++SR+TD+F +PL+LAAIV+M + +
Sbjct 118 ASVTVGVLTTLIVTLVGSLVGAIAGFYGGIWDTILSRITDIFFAVPLVLAAIVVMSMFQN 177
Query 122 R-TVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
R ++W V+ LA+FGW Q+ARI RGAV+ ++ ++V AA+ALG + +I+ H +PNA
Sbjct 178 RRSIWMVVFALAMFGWTQIARITRGAVMGIKNDEFVTAARALGASDARIISSHIMPNAAA 237
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
P+I ATVALG FIV EATLS+LG+GLPT+VVSWGGDI+ AQ LR+ +LFYPA ALA
Sbjct 238 PIIVYATVALGTFIVAEATLSFLGIGLPTTVVSWGGDISAAQASLRTQPMVLFYPAIALA 297
Query 241 ITVLAFMMMGDALRDALDPASR 262
+TVL+F+MMGDA+RDALDP +R
Sbjct 298 LTVLSFIMMGDAVRDALDPKAR 319
>gi|257068290|ref|YP_003154545.1| ABC-type dipeptide/oligopeptide/nickel transporter permease [Brachybacterium
faecium DSM 4810]
gi|256559108|gb|ACU84955.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease
component [Brachybacterium faecium DSM 4810]
Length=318
Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 144/262 (55%), Positives = 193/262 (74%), Gaps = 0/262 (0%)
Query 1 VIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 60
V++A LIL +L VAAFP +FT+ DP YAD + + P A H FGT G+DI +RT +GA
Sbjct 55 VVSALLILFVLFVAAFPQVFTSQDPRYADLTTANQPPGAGHPFGTSRLGYDIMARTFWGA 114
Query 61 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 120
R SV +G A + ++GG +GALAG+ G W D V+SRVTDVF +PL+L AIV+ +
Sbjct 115 RTSVVIGFFAMIGSTLIGGTIGALAGYLGGWFDEVISRVTDVFFAIPLILGAIVVYTRLG 174
Query 121 HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVG 180
+WTVIA+L++FGW VARI RGAV+ ++ D+V ++ ALG + +LL+H +PNA+
Sbjct 175 EMNLWTVIAVLSVFGWTNVARIMRGAVISTKSQDFVTSSIALGASSPTVLLKHVIPNAIA 234
Query 181 PVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALA 240
PVI ATV LG+FIV EATLS+LGVGLPTS VSWGGDI+ A+ LR+ +LFYP+ ALA
Sbjct 235 PVIVTATVNLGVFIVAEATLSFLGVGLPTSAVSWGGDISAARDALRTQPSMLFYPSVALA 294
Query 241 ITVLAFMMMGDALRDALDPASR 262
+TVL+F+M+GDA+RDALDP +R
Sbjct 295 VTVLSFIMLGDAVRDALDPKAR 316
>gi|337290430|ref|YP_004629451.1| hypothetical protein CULC22_00819 [Corynebacterium ulcerans BR-AD22]
gi|334696543|gb|AEG81340.1| putative membrane protein [Corynebacterium ulcerans 809]
gi|334698736|gb|AEG83532.1| putative membrane protein [Corynebacterium ulcerans BR-AD22]
Length=319
Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 145/261 (56%), Positives = 195/261 (75%), Gaps = 1/261 (0%)
Query 3 AAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGARA 62
+AALIL +++A P +FT+ DP + + S+S+ P+ H FG D QG DIY+R +YGARA
Sbjct 57 SAALILTAVLLAVIPQMFTSTDPGFCELSKSLADPTEGHPFGFDRQGCDIYARMIYGARA 116
Query 63 SVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVM-HH 121
SV VG+ TLAV ++G +GA AGF+G +D ++SR+TD+F +PL+LAAIV+MQ+
Sbjct 117 SVAVGVFTTLAVVIIGTVIGAAAGFFGGILDTLLSRLTDIFFAVPLVLAAIVVMQMFKQE 176
Query 122 RTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAVGP 181
RTV TV+ +LA+FGW +ARI RGAVL V+ ++V AA+A+G ++++IL H LPNA P
Sbjct 177 RTVMTVVVVLAMFGWTNIARITRGAVLSVKNEEFVTAARAVGASKWKILSSHILPNAAAP 236
Query 182 VIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGALAI 241
+I ATVALG FIV EATLS+LG+GLP ++VSWGGDI AQ LR+ +LFYPA AL
Sbjct 237 IIVYATVALGTFIVAEATLSFLGIGLPPNIVSWGGDIAKAQVSLRTQPMVLFYPAVALGA 296
Query 242 TVLAFMMMGDALRDALDPASR 262
TVL+F+MMGD +RDALDP SR
Sbjct 297 TVLSFIMMGDVVRDALDPKSR 317
>gi|322689437|ref|YP_004209171.1| dipeptide ABC transporter permease [Bifidobacterium longum subsp.
infantis 157F]
gi|320460773|dbj|BAJ71393.1| dipeptide ABC transporter permease component [Bifidobacterium
longum subsp. infantis 157F]
Length=334
Score = 288 bits (738), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 143/263 (55%), Positives = 192/263 (74%), Gaps = 1/263 (0%)
Query 1 VIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 60
+I+ LIL I+VVA P LFT DP D S+ SA H FG DLQG D+Y+R VYG
Sbjct 70 IISGLLILFIIVVAIAPGLFTKQDPNACDLGNSLSPASAGHPFGYDLQGCDVYTRVVYGT 129
Query 61 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 120
R S++VG+ +TL V +VG +GA+AGF+G W+DAV+SR+TD+F LP+LL AIV++Q+
Sbjct 130 RTSLSVGVLSTLLVVIVGTLIGAVAGFFGGWVDAVLSRITDIFFALPMLLGAIVVLQMFK 189
Query 121 -HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAV 179
+++W ++ +L LFGW V RIAR AVLE + ++ A+ ALG + L RH LPN++
Sbjct 190 TSKSIWKIVLVLTLFGWVGVCRIARSAVLESKNLEFNTASTALGSTPARNLFRHILPNSL 249
Query 180 GPVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGAL 239
P+I +AT +L +IV EATLS+LGVGLPT+ VSWGGDI+ AQT L++ +LFYP+ AL
Sbjct 250 APIIVIATTSLASYIVAEATLSFLGVGLPTTTVSWGGDISSAQTNLQTDPMVLFYPSAAL 309
Query 240 AITVLAFMMMGDALRDALDPASR 262
AITVLAF+MMGDA++DALDP SR
Sbjct 310 AITVLAFIMMGDAVKDALDPKSR 332
>gi|227547627|ref|ZP_03977676.1| peptide ABC superfamily ATP binding cassette transporter permease
[Bifidobacterium longum subsp. infantis ATCC 55813]
gi|322691404|ref|YP_004220974.1| dipeptide ABC transporter permease [Bifidobacterium longum subsp.
longum JCM 1217]
gi|227211882|gb|EEI79778.1| peptide ABC superfamily ATP binding cassette transporter permease
[Bifidobacterium longum subsp. infantis ATCC 55813]
gi|320456260|dbj|BAJ66882.1| dipeptide ABC transporter permease component [Bifidobacterium
longum subsp. longum JCM 1217]
gi|338754308|gb|AEI97297.1| dipeptide ABC transporter permease [Bifidobacterium longum subsp.
longum KACC 91563]
Length=334
Score = 288 bits (738), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 143/263 (55%), Positives = 192/263 (74%), Gaps = 1/263 (0%)
Query 1 VIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 60
+I+ LIL I+VVA P LFT DP D S+ SA H FG DLQG D+Y+R VYG
Sbjct 70 IISGLLILFIIVVAIAPGLFTKQDPNACDLGNSLSPASAGHPFGYDLQGCDVYTRVVYGT 129
Query 61 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 120
R S++VG+ +TL V +VG +GA+AGF+G W+DAV+SR+TD+F LP+LL AIV++Q+
Sbjct 130 RTSLSVGVLSTLLVVIVGTLIGAVAGFFGGWVDAVLSRITDIFFALPMLLGAIVVLQMFK 189
Query 121 -HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAV 179
+++W ++ +L LFGW V RIAR AVLE + ++ A+ ALG + L RH LPN++
Sbjct 190 TSKSIWKIVLVLTLFGWVGVCRIARSAVLESKNLEFNTASTALGSTPARNLFRHILPNSL 249
Query 180 GPVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGAL 239
P+I +AT +L +IV EATLS+LGVGLPT+ VSWGGDI+ AQT L++ +LFYP+ AL
Sbjct 250 APIIVIATTSLASYIVAEATLSFLGVGLPTTTVSWGGDISSAQTNLQTDPMVLFYPSAAL 309
Query 240 AITVLAFMMMGDALRDALDPASR 262
AITVLAF+MMGDA++DALDP SR
Sbjct 310 AITVLAFIMMGDAVKDALDPKSR 332
>gi|213691816|ref|YP_002322402.1| binding-protein-dependent transport systems inner membrane component
[Bifidobacterium longum subsp. infantis ATCC 15697]
gi|213523277|gb|ACJ52024.1| binding-protein-dependent transport systems inner membrane component
[Bifidobacterium longum subsp. infantis ATCC 15697]
gi|320457910|dbj|BAJ68531.1| dipeptide ABC transporter permease component [Bifidobacterium
longum subsp. infantis ATCC 15697]
Length=334
Score = 288 bits (737), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 142/263 (54%), Positives = 192/263 (74%), Gaps = 1/263 (0%)
Query 1 VIAAALILLILVVAAFPSLFTAADPTYADPSQSMLAPSAAHWFGTDLQGHDIYSRTVYGA 60
+I+ LIL I+VVA P LFT DP D S+ +A H FG DLQG D+Y+R +YG
Sbjct 70 IISGLLILFIIVVAIAPGLFTKQDPNACDLGNSLSPSTAGHPFGFDLQGCDVYTRVIYGT 129
Query 61 RASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMH 120
R S++VG+ +TL V +VG +GA+AGF+G WIDAV+SR+TD+F LP+LL AIV++Q+
Sbjct 130 RTSLSVGVLSTLLVVIVGTLIGAVAGFFGGWIDAVLSRITDIFFALPMLLGAIVVLQMFK 189
Query 121 -HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAKALGLNRFQILLRHALPNAV 179
+++W ++ +L LFGW V RIAR AVLE + ++ A+ ALG + L RH LPN++
Sbjct 190 TSKSIWKIVLVLTLFGWVGVCRIARSAVLESKNLEFNTASTALGSTPARNLFRHILPNSL 249
Query 180 GPVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINVAQTRLRSGSPILFYPAGAL 239
P+I +AT +L +IV EATLS+LGVGLPT+ VSWGGDI+ AQT L++ +LFYP+ AL
Sbjct 250 APIIVIATTSLASYIVAEATLSFLGVGLPTTTVSWGGDISSAQTNLQTDPMVLFYPSAAL 309
Query 240 AITVLAFMMMGDALRDALDPASR 262
AITVLAF+MMGDA++DALDP SR
Sbjct 310 AITVLAFIMMGDAVKDALDPKSR 332
Lambda K H
0.327 0.138 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 404210254038
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40