BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3669
Length=172
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610805|ref|NP_218186.1| transmembrane protein [Mycobacteriu... 339 1e-91
gi|340628641|ref|YP_004747093.1| hypothetical protein MCAN_36891... 337 3e-91
gi|254820843|ref|ZP_05225844.1| hypothetical protein MintA_12993... 258 3e-67
gi|118467139|ref|YP_879742.1| hypothetical protein MAV_0460 [Myc... 256 9e-67
gi|41406503|ref|NP_959339.1| hypothetical protein MAP0405c [Myco... 256 1e-66
gi|240172673|ref|ZP_04751332.1| hypothetical protein MkanA1_2538... 251 2e-65
gi|342861994|ref|ZP_08718638.1| hypothetical protein MCOL_24005 ... 251 3e-65
gi|15828228|ref|NP_302491.1| hypothetical protein ML2296 [Mycoba... 246 8e-64
gi|118472398|ref|YP_890402.1| hypothetical protein MSMEG_6182 [M... 246 9e-64
gi|183985127|ref|YP_001853418.1| hypothetical protein MMAR_5157 ... 244 3e-63
gi|118619411|ref|YP_907743.1| hypothetical protein MUL_4243 [Myc... 243 9e-63
gi|296166726|ref|ZP_06849150.1| conserved hypothetical protein [... 236 8e-61
gi|108801774|ref|YP_641971.1| hypothetical protein Mmcs_4811 [My... 223 8e-57
gi|126437762|ref|YP_001073453.1| hypothetical protein Mjls_5198 ... 223 1e-56
gi|120406375|ref|YP_956204.1| hypothetical protein Mvan_5428 [My... 221 2e-56
gi|145221970|ref|YP_001132648.1| hypothetical protein Mflv_1378 ... 219 8e-56
gi|315446291|ref|YP_004079170.1| hypothetical protein Mspyr1_479... 219 8e-56
gi|333992587|ref|YP_004525201.1| transmembrane protein [Mycobact... 203 7e-51
gi|169627527|ref|YP_001701176.1| hypothetical protein MAB_0423c ... 177 5e-43
gi|226303976|ref|YP_002763934.1| hypothetical protein RER_04870 ... 159 1e-37
gi|229494788|ref|ZP_04388544.1| conserved hypothetical protein [... 159 2e-37
gi|226363648|ref|YP_002781430.1| hypothetical protein ROP_42380 ... 155 2e-36
gi|111021304|ref|YP_704276.1| hypothetical protein RHA1_ro04328 ... 143 7e-33
gi|325675278|ref|ZP_08154963.1| hypothetical protein HMPREF0724_... 143 1e-32
gi|296141593|ref|YP_003648836.1| hypothetical protein Tpau_3925 ... 143 1e-32
gi|333917950|ref|YP_004491531.1| hypothetical protein AS9A_0272 ... 141 3e-32
gi|312137996|ref|YP_004005332.1| integral membrane protein [Rhod... 140 5e-32
gi|300790627|ref|YP_003770918.1| hypothetical protein AMED_8823 ... 138 2e-31
gi|343926480|ref|ZP_08765985.1| hypothetical protein GOALK_060_0... 138 4e-31
gi|291010074|ref|ZP_06568047.1| hypothetical protein SeryN2_3664... 134 4e-30
gi|134096949|ref|YP_001102610.1| hypothetical protein SACE_0335 ... 134 4e-30
gi|324997486|ref|ZP_08118598.1| hypothetical protein PseP1_01916... 132 2e-29
gi|302530864|ref|ZP_07283206.1| predicted protein [Streptomyces ... 130 9e-29
gi|227502470|ref|ZP_03932519.1| integral membrane protein [Coryn... 129 1e-28
gi|68537061|ref|YP_251766.1| hypothetical protein jk1966 [Coryne... 125 3e-27
gi|260579405|ref|ZP_05847287.1| membrane protein [Corynebacteriu... 124 4e-27
gi|54022317|ref|YP_116559.1| hypothetical protein nfa3530 [Nocar... 124 6e-27
gi|331694301|ref|YP_004330540.1| integral membrane protein [Pseu... 119 1e-25
gi|258650971|ref|YP_003200127.1| hypothetical protein Namu_0724 ... 118 3e-25
gi|213966017|ref|ZP_03394206.1| conserved hypothetical protein [... 117 4e-25
gi|227505655|ref|ZP_03935704.1| transmembrane protein [Corynebac... 117 5e-25
gi|227832047|ref|YP_002833754.1| hypothetical protein cauri_0217... 117 5e-25
gi|256374415|ref|YP_003098075.1| hypothetical protein Amir_0260 ... 112 2e-23
gi|255324186|ref|ZP_05365308.1| conserved hypothetical protein [... 111 3e-23
gi|300857629|ref|YP_003782612.1| hypothetical protein cpfrc_0021... 110 7e-23
gi|296118082|ref|ZP_06836664.1| putative membrane protein [Coryn... 110 8e-23
gi|334563451|ref|ZP_08516442.1| hypothetical protein CbovD2_0266... 109 2e-22
gi|19551548|ref|NP_599550.1| hypothetical protein NCgl0293 [Cory... 108 2e-22
gi|145294429|ref|YP_001137250.1| hypothetical protein cgR_0384 [... 108 3e-22
gi|237786545|ref|YP_002907250.1| hypothetical protein ckrop_1999... 108 3e-22
>gi|15610805|ref|NP_218186.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|31794839|ref|NP_857332.1| transmembrane protein [Mycobacterium bovis AF2122/97]
gi|121639582|ref|YP_979806.1| putative transmembrane protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
76 more sequence titles
Length=172
Score = 339 bits (869), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/172 (99%), Positives = 172/172 (100%), Gaps = 0/172 (0%)
Query 1 VSKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
+SKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD
Sbjct 1 MSKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
Query 61 VKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALL 120
VKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALL
Sbjct 61 VKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALL 120
Query 121 GFLKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTSDRATPVDPSGW 172
GFLKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTSDRATPVDPSGW
Sbjct 121 GFLKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTSDRATPVDPSGW 172
>gi|340628641|ref|YP_004747093.1| hypothetical protein MCAN_36891 [Mycobacterium canettii CIPT
140010059]
gi|340006831|emb|CCC46020.1| putative conserved transmembrane protein [Mycobacterium canettii
CIPT 140010059]
Length=172
Score = 337 bits (865), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/172 (99%), Positives = 172/172 (100%), Gaps = 0/172 (0%)
Query 1 VSKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
+SKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD
Sbjct 1 MSKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
Query 61 VKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALL 120
VKKGLTGSVFFISSLVVGFYSTFFFFFF+AELLDTWIWRWVAFLLVFAIMVVVTAVLALL
Sbjct 61 VKKGLTGSVFFISSLVVGFYSTFFFFFFLAELLDTWIWRWVAFLLVFAIMVVVTAVLALL 120
Query 121 GFLKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTSDRATPVDPSGW 172
GFLKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKP+TSDRATPVDPSGW
Sbjct 121 GFLKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPITSDRATPVDPSGW 172
>gi|254820843|ref|ZP_05225844.1| hypothetical protein MintA_12993 [Mycobacterium intracellulare
ATCC 13950]
Length=172
Score = 258 bits (658), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 139/171 (82%), Positives = 148/171 (87%), Gaps = 0/171 (0%)
Query 1 VSKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
+SK D KNGVPSTLTTIPL DPHA PAE SIGDLIKDATTQ+STLVRAEVELARAEITRD
Sbjct 1 MSKADGKNGVPSTLTTIPLTDPHAKPAESSIGDLIKDATTQVSTLVRAEVELARAEITRD 60
Query 61 VKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALL 120
VKKGLTGSVFFI++LVV FYSTFFFFFFVAELLDTW+WRWVA+L+VF IMVVV AVLALL
Sbjct 61 VKKGLTGSVFFIAALVVLFYSTFFFFFFVAELLDTWLWRWVAYLIVFGIMVVVGAVLALL 120
Query 121 GFLKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTSDRATPVDPSG 171
GFLKVRRIRGPR+TI SVKETRTALTPGHDK + R DPSG
Sbjct 121 GFLKVRRIRGPRETIESVKETRTALTPGHDKQLTGSHGRHAKRDAAADPSG 171
>gi|118467139|ref|YP_879742.1| hypothetical protein MAV_0460 [Mycobacterium avium 104]
gi|254773466|ref|ZP_05214982.1| hypothetical protein MaviaA2_02145 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118168426|gb|ABK69323.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=179
Score = 256 bits (654), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 140/179 (79%), Positives = 150/179 (84%), Gaps = 7/179 (3%)
Query 1 VSKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
+SK++ KNGVPSTLTTIPL DPHA PAEP+IGDLIKDATTQ+STLVRAEVELARAEITRD
Sbjct 1 MSKVEGKNGVPSTLTTIPLTDPHAKPAEPTIGDLIKDATTQVSTLVRAEVELARAEITRD 60
Query 61 VKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALL 120
VKKGLTGSVFFI++LVV FYSTFFFFFFVAELLDTW+WRWVAFL+VF + VVV AVLALL
Sbjct 61 VKKGLTGSVFFIAALVVLFYSTFFFFFFVAELLDTWLWRWVAFLIVFGVQVVVGAVLALL 120
Query 121 GFLKVRRIRGPRQTIASVKETRTALTPGHDK-------TPVTPKPVTSDRATPVDPSGW 172
GFLKVRRIRGPRQTI SVKETRTALTPGHDK T K DPSGW
Sbjct 121 GFLKVRRIRGPRQTIESVKETRTALTPGHDKAAGARALTESHGKHAKPGDGAAADPSGW 179
>gi|41406503|ref|NP_959339.1| hypothetical protein MAP0405c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41394852|gb|AAS02722.1| hypothetical protein MAP_0405c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336460819|gb|EGO39704.1| Protein of unknown function (DUF1469) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=179
Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 140/179 (79%), Positives = 150/179 (84%), Gaps = 7/179 (3%)
Query 1 VSKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
+SK++ KNGVPSTLTTIPL DPHA PAEP+IGDLIKDATTQ+STLVRAEVELARAEITRD
Sbjct 1 MSKVEGKNGVPSTLTTIPLTDPHAKPAEPTIGDLIKDATTQVSTLVRAEVELARAEITRD 60
Query 61 VKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALL 120
VKKGLTGSVFFI++LVV FYSTFFFFFFVAELLDTW+WRWVAFL+VF + VVV AVLALL
Sbjct 61 VKKGLTGSVFFIAALVVLFYSTFFFFFFVAELLDTWLWRWVAFLIVFGVQVVVGAVLALL 120
Query 121 GFLKVRRIRGPRQTIASVKETRTALTPGHDK-------TPVTPKPVTSDRATPVDPSGW 172
GFLKVRRIRGPRQTI SVKETRTALTPGHDK T K DPSGW
Sbjct 121 GFLKVRRIRGPRQTIESVKETRTALTPGHDKAGGARALTESHGKHAKPGDGAAADPSGW 179
>gi|240172673|ref|ZP_04751332.1| hypothetical protein MkanA1_25385 [Mycobacterium kansasii ATCC
12478]
Length=172
Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/172 (82%), Positives = 153/172 (89%), Gaps = 0/172 (0%)
Query 1 VSKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
+SK DR+ GVPSTLTTIPLADPHA P EPSIGDLIKDATTQMSTLVRAEVELARAEITRD
Sbjct 1 MSKPDRQTGVPSTLTTIPLADPHARPGEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
Query 61 VKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALL 120
VK+GLTGSVFFI++LVV FYSTFF FFF+AELLD+W+WRWVAFL+VFA+MVV T VLALL
Sbjct 61 VKRGLTGSVFFIAALVVLFYSTFFLFFFLAELLDSWLWRWVAFLIVFALMVVTTVVLALL 120
Query 121 GFLKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTSDRATPVDPSGW 172
GFLKVRRIRGP+QTI SVKETRTAL PGHDKTP +P + TP DPSGW
Sbjct 121 GFLKVRRIRGPQQTIESVKETRTALMPGHDKTPAVTRPAAPEGTTPTDPSGW 172
>gi|342861994|ref|ZP_08718638.1| hypothetical protein MCOL_24005 [Mycobacterium colombiense CECT
3035]
gi|342130534|gb|EGT83843.1| hypothetical protein MCOL_24005 [Mycobacterium colombiense CECT
3035]
Length=179
Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 141/180 (79%), Positives = 152/180 (85%), Gaps = 9/180 (5%)
Query 1 VSKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
+SK D K GVPSTLTTIPL DPHA PAEPSIGDLIKDATTQ+STLVRAEVELARAEITRD
Sbjct 1 MSKADGKTGVPSTLTTIPLTDPHAKPAEPSIGDLIKDATTQVSTLVRAEVELARAEITRD 60
Query 61 VKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALL 120
VKKGLTGSVFFI++LVV FYSTFFFFFF+AELLDTW+WRWV+FL+VF IMVVV AVLAL
Sbjct 61 VKKGLTGSVFFIAALVVLFYSTFFFFFFLAELLDTWLWRWVSFLIVFGIMVVVGAVLALF 120
Query 121 GFLKVRRIRGPRQTIASVKETRTALTPGHDKTP----VTPKPVTSDRATP----VDPSGW 172
GFLKVRRIRGPR+TI SVKETR+ALTPGHDK P P+P A P DPSGW
Sbjct 121 GFLKVRRIRGPRETIESVKETRSALTPGHDKAPGGAKALPEP-HGRHAKPGSDAGDPSGW 179
>gi|15828228|ref|NP_302491.1| hypothetical protein ML2296 [Mycobacterium leprae TN]
gi|221230705|ref|YP_002504121.1| hypothetical protein MLBr_02296 [Mycobacterium leprae Br4923]
gi|13093921|emb|CAC31812.1| putative membrane protein [Mycobacterium leprae]
gi|219933812|emb|CAR72394.1| putative membrane protein [Mycobacterium leprae Br4923]
Length=181
Score = 246 bits (628), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 140/181 (78%), Positives = 153/181 (85%), Gaps = 9/181 (4%)
Query 1 VSKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
+SK DRKNGVPSTLTTIPL DPHA P EPSIGDLIKDATTQ+STLVRAEVELARAEI RD
Sbjct 1 MSKGDRKNGVPSTLTTIPLVDPHAEPTEPSIGDLIKDATTQVSTLVRAEVELARAEIIRD 60
Query 61 VKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALL 120
VKKGLTGSVFFI++LVV FYSTFFFF F+AELLDTW+WRWVA L+VFAIMV+VTA LALL
Sbjct 61 VKKGLTGSVFFIAALVVLFYSTFFFFLFLAELLDTWLWRWVALLIVFAIMVMVTAALALL 120
Query 121 GFLKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTS---------DRATPVDPSG 171
G++K+RRIRGP QTI SVKETRTALTPGHDK P+ +T DR TP DPSG
Sbjct 121 GYVKIRRIRGPHQTIESVKETRTALTPGHDKAQARPRKLTGSGTNPENNPDRRTPADPSG 180
Query 172 W 172
W
Sbjct 181 W 181
>gi|118472398|ref|YP_890402.1| hypothetical protein MSMEG_6182 [Mycobacterium smegmatis str.
MC2 155]
gi|118173685|gb|ABK74581.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=169
Score = 246 bits (628), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 131/168 (78%), Positives = 146/168 (87%), Gaps = 3/168 (1%)
Query 5 DRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKG 64
DR+NGVP+T+T+IPL DPHA +PSIGDL+KDAT Q+STLVRAEVELA+AEITRDVKKG
Sbjct 5 DRRNGVPATVTSIPLVDPHAPKPDPSIGDLVKDATAQVSTLVRAEVELAKAEITRDVKKG 64
Query 65 LTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLK 124
LTGSVFFI++LVV FYSTFFFFFF+AELLDTW+WRWVAFL+VFAIM+VVT LAL GFLK
Sbjct 65 LTGSVFFIAALVVLFYSTFFFFFFLAELLDTWLWRWVAFLIVFAIMLVVTGALALFGFLK 124
Query 125 VRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTSDRATPVDPSGW 172
VRRIRGPRQTI SVKETR ALTPGHDKTP V +D DPSGW
Sbjct 125 VRRIRGPRQTIESVKETREALTPGHDKTPAQ---VDADAKPASDPSGW 169
>gi|183985127|ref|YP_001853418.1| hypothetical protein MMAR_5157 [Mycobacterium marinum M]
gi|183178453|gb|ACC43563.1| conserved membrane protein [Mycobacterium marinum M]
Length=172
Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 142/173 (83%), Positives = 153/173 (89%), Gaps = 2/173 (1%)
Query 1 VSKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
+SK DRKNGVPSTLTTIPLADPHA PAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD
Sbjct 1 MSKPDRKNGVPSTLTTIPLADPHAMPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
Query 61 VKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALL 120
VKKGLTGSVFFI++LVV FYSTFF FFF+AELLDTW+WRWVAFL+VF +MV+ T +LALL
Sbjct 61 VKKGLTGSVFFIAALVVLFYSTFFLFFFLAELLDTWLWRWVAFLIVFGLMVLTTGMLALL 120
Query 121 GFLKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTSDRATPV-DPSGW 172
GFLKVRRIRGPRQTI SVKETRTAL PGHDK+ +P S PV DPSGW
Sbjct 121 GFLKVRRIRGPRQTIESVKETRTALIPGHDKSTAV-EPSASAPGKPVTDPSGW 172
>gi|118619411|ref|YP_907743.1| hypothetical protein MUL_4243 [Mycobacterium ulcerans Agy99]
gi|118571521|gb|ABL06272.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=172
Score = 243 bits (619), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 143/179 (80%), Positives = 153/179 (86%), Gaps = 14/179 (7%)
Query 1 VSKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
+SK DRKNGVPSTLTTIPLADPHA PAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD
Sbjct 1 MSKPDRKNGVPSTLTTIPLADPHAMPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
Query 61 VKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALL 120
VKKGLTGSVFFI++LVV FYSTFF FFF+AELLDTW+WRWVAFL+VF +MV+ T +LALL
Sbjct 61 VKKGLTGSVFFIAALVVLFYSTFFLFFFLAELLDTWLWRWVAFLIVFGLMVLTTGMLALL 120
Query 121 GFLKVRRIRGPRQTIASVKETRTALTPGHDKT-------PVTPKPVTSDRATPVDPSGW 172
GFLKVRRIRGPRQTI SVKETRTAL PGHDK+ P KPVT DPSGW
Sbjct 121 GFLKVRRIRGPRQTIESVKETRTALIPGHDKSTAVEPSAPAPGKPVT-------DPSGW 172
>gi|296166726|ref|ZP_06849150.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897896|gb|EFG77478.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=175
Score = 236 bits (602), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 139/175 (80%), Positives = 148/175 (85%), Gaps = 3/175 (1%)
Query 1 VSKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
+SK D KNGVPSTLTTIPLADPHA PAEPSIGDLIKDATTQ+STLVRAEVELARAEITRD
Sbjct 1 MSKPDGKNGVPSTLTTIPLADPHARPAEPSIGDLIKDATTQVSTLVRAEVELARAEITRD 60
Query 61 VKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALL 120
VKKGLTGSVFFI++LVV FYSTFFFFFFVAELLDTW+WRW AFL+VF VVV A+LALL
Sbjct 61 VKKGLTGSVFFIAALVVLFYSTFFFFFFVAELLDTWLWRWAAFLIVFGAQVVVGALLALL 120
Query 121 GFLKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTS---DRATPVDPSGW 172
GFLKVRRIRGPR+TI SVKETRTALTPGHDK P + DPSGW
Sbjct 121 GFLKVRRIRGPRETIESVKETRTALTPGHDKAPGQANQLAERGKHEKPDTDPSGW 175
>gi|108801774|ref|YP_641971.1| hypothetical protein Mmcs_4811 [Mycobacterium sp. MCS]
gi|119870925|ref|YP_940877.1| hypothetical protein Mkms_4897 [Mycobacterium sp. KMS]
gi|108772193|gb|ABG10915.1| protein of unknown function DUF1469 [Mycobacterium sp. MCS]
gi|119697014|gb|ABL94087.1| protein of unknown function DUF1469 [Mycobacterium sp. KMS]
Length=170
Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 128/173 (74%), Positives = 150/173 (87%), Gaps = 4/173 (2%)
Query 1 VSKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
+S+ DRKNGVP+T+T+IPL DPHA +PSIGDL+KDAT+Q+STLVRAEVELA+AEITRD
Sbjct 1 MSRGDRKNGVPTTVTSIPLVDPHAPKPDPSIGDLVKDATSQVSTLVRAEVELAKAEITRD 60
Query 61 VKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALL 120
VKKGLTGSVFFI++LVV FYSTFFFFFF AELLDTW+WRW +FL+VF +MV+VTA+LALL
Sbjct 61 VKKGLTGSVFFIAALVVLFYSTFFFFFFAAELLDTWLWRWASFLIVFGVMVLVTALLALL 120
Query 121 GFLKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVT-SDRATPVDPSGW 172
G+LKVRRIRGP++TI SVKETR ALTPGHDK PK V +D DPSGW
Sbjct 121 GYLKVRRIRGPQKTIESVKETREALTPGHDK---APKAVAITDGQKTGDPSGW 170
>gi|126437762|ref|YP_001073453.1| hypothetical protein Mjls_5198 [Mycobacterium sp. JLS]
gi|126237562|gb|ABO00963.1| protein of unknown function DUF1469 [Mycobacterium sp. JLS]
Length=170
Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/173 (74%), Positives = 150/173 (87%), Gaps = 4/173 (2%)
Query 1 VSKIDRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
+S+ DRKNGVP+T+T+IPL DPHA +PSIGDL+KDAT+Q+STLVRAEVELA+AEITRD
Sbjct 1 MSRGDRKNGVPTTVTSIPLVDPHAPKPDPSIGDLVKDATSQVSTLVRAEVELAKAEITRD 60
Query 61 VKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALL 120
VKKGLTGS+FFI++LVV FYSTFFFFFF AELLDTW+WRW +FL+VF +MV+VTA+LALL
Sbjct 61 VKKGLTGSIFFIAALVVLFYSTFFFFFFAAELLDTWLWRWASFLIVFGVMVLVTALLALL 120
Query 121 GFLKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVT-SDRATPVDPSGW 172
G+LKVRRIRGP++TI SVKETR ALTPGHDK PK V +D DPSGW
Sbjct 121 GYLKVRRIRGPQKTIESVKETREALTPGHDK---APKAVAITDGQKTGDPSGW 170
>gi|120406375|ref|YP_956204.1| hypothetical protein Mvan_5428 [Mycobacterium vanbaalenii PYR-1]
gi|119959193|gb|ABM16198.1| protein of unknown function DUF1469 [Mycobacterium vanbaalenii
PYR-1]
Length=175
Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/168 (70%), Positives = 139/168 (83%), Gaps = 2/168 (1%)
Query 5 DRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKG 64
DR+NGVP+T+T+IPL DPHA +PSIGDL+KDAT Q+STLVRAEVELA+AEITRDVKKG
Sbjct 10 DRRNGVPNTVTSIPLVDPHAPKPDPSIGDLVKDATAQVSTLVRAEVELAKAEITRDVKKG 69
Query 65 LTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLK 124
LTGSVFFI +LVV FYSTFFFFFF+AELLD W+W+W ++L+VF IMVV+T +LAL G+LK
Sbjct 70 LTGSVFFIGALVVLFYSTFFFFFFLAELLDNWLWKWASYLIVFGIMVVLTGLLALFGYLK 129
Query 125 VRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTSDRATPVDPSGW 172
VRRIRGP++TI +V+E A TPG DK V D+A P DPSGW
Sbjct 130 VRRIRGPQKTIETVREIPEAFTPGPDKRSVA--TTNGDQAPPKDPSGW 175
>gi|145221970|ref|YP_001132648.1| hypothetical protein Mflv_1378 [Mycobacterium gilvum PYR-GCK]
gi|145214456|gb|ABP43860.1| protein of unknown function DUF1469 [Mycobacterium gilvum PYR-GCK]
Length=169
Score = 219 bits (559), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 119/170 (70%), Positives = 140/170 (83%), Gaps = 5/170 (2%)
Query 5 DRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKG 64
DRKN VP+T+T+IPL DPHA +PSIGDL+KDAT Q+STLVRAEVELA+AEITRDVKKG
Sbjct 3 DRKNDVPNTVTSIPLVDPHAPKPDPSIGDLVKDATAQVSTLVRAEVELAKAEITRDVKKG 62
Query 65 LTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLK 124
LTGSVFFI++LVV FYSTFFFFFF+AELLD W+W+W A+L+VF IMVV+TA+LAL G+LK
Sbjct 63 LTGSVFFIAALVVLFYSTFFFFFFLAELLDNWLWKWAAYLIVFGIMVVLTALLALFGYLK 122
Query 125 VRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTSDR--ATPVDPSGW 172
VRRIRGP++TI +VKE A TPG DK V + D AT DPSGW
Sbjct 123 VRRIRGPQKTIETVKELPDAFTPGPDKRAVA---ASKDNLPATQKDPSGW 169
>gi|315446291|ref|YP_004079170.1| hypothetical protein Mspyr1_47950 [Mycobacterium sp. Spyr1]
gi|315264594|gb|ADU01336.1| Protein of unknown function (DUF1469) [Mycobacterium sp. Spyr1]
Length=183
Score = 219 bits (559), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 119/170 (70%), Positives = 140/170 (83%), Gaps = 5/170 (2%)
Query 5 DRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKG 64
DRKN VP+T+T+IPL DPHA +PSIGDL+KDAT Q+STLVRAEVELA+AEITRDVKKG
Sbjct 17 DRKNDVPNTVTSIPLVDPHAPKPDPSIGDLVKDATAQVSTLVRAEVELAKAEITRDVKKG 76
Query 65 LTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLK 124
LTGSVFFI++LVV FYSTFFFFFF+AELLD W+W+W A+L+VF IMVV+TA+LAL G+LK
Sbjct 77 LTGSVFFIAALVVLFYSTFFFFFFLAELLDNWLWKWAAYLIVFGIMVVLTALLALFGYLK 136
Query 125 VRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTSDR--ATPVDPSGW 172
VRRIRGP++TI +VKE A TPG DK V + D AT DPSGW
Sbjct 137 VRRIRGPQKTIETVKELPDAFTPGPDKRAVA---ASKDNLPATQKDPSGW 183
>gi|333992587|ref|YP_004525201.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333488555|gb|AEF37947.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=165
Score = 203 bits (517), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 110/165 (67%), Positives = 134/165 (82%), Gaps = 2/165 (1%)
Query 10 VPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTGSV 69
+P+TL TIPL DPHA PA+PS+G+L+KDAT QMSTLVRAEVELARAEITRDVKKGLTGSV
Sbjct 1 MPNTLATIPLTDPHALPADPSLGELVKDATAQMSTLVRAEVELARAEITRDVKKGLTGSV 60
Query 70 FFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRRIR 129
FFI++LVV FYSTFFFFFF+AE+L+ W+ W A+L+VF +M+ V + LAL GFL+VRRIR
Sbjct 61 FFIAALVVLFYSTFFFFFFLAEVLNIWLQDWAAYLIVFGVMLTVASGLALFGFLRVRRIR 120
Query 130 GPRQTIASVKETRTALTPGHDKTPVT-PKPVTSDRATPV-DPSGW 172
GPRQTI SV+ETR AL P D+ + P+ + + P DPSGW
Sbjct 121 GPRQTIESVRETREALRPDPDRLHSSGPQSLKAHDGKPATDPSGW 165
>gi|169627527|ref|YP_001701176.1| hypothetical protein MAB_0423c [Mycobacterium abscessus ATCC
19977]
gi|169239494|emb|CAM60522.1| Conserved hypothetical membrane protein [Mycobacterium abscessus]
Length=173
Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/166 (60%), Positives = 124/166 (75%), Gaps = 7/166 (4%)
Query 8 NGVPSTLTTIPLADPHA-GPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLT 66
NGVP T+ IPL+DP+A G EP+IG+L++DATTQ+S LVRAEVELARAE+ RDVKKG+
Sbjct 14 NGVPITVAAIPLSDPNATGTGEPTIGNLVRDATTQVSALVRAEVELARAEVIRDVKKGVA 73
Query 67 GSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVR 126
GS+FFI++LVV FYSTFFFFFF AE+L W+ W A+L++FA MV V + L+G+L+VR
Sbjct 74 GSIFFIAALVVLFYSTFFFFFFAAEVLKIWLPAWAAYLIIFAAMVFVAVLAVLIGYLQVR 133
Query 127 RIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTSDRATPVDPSGW 172
RIRGP+ TI SVKET + D+ P K + PVDPSGW
Sbjct 134 RIRGPQATIESVKETANVFS-REDEAPSDTKAI-----KPVDPSGW 173
>gi|226303976|ref|YP_002763934.1| hypothetical protein RER_04870 [Rhodococcus erythropolis PR4]
gi|226183091|dbj|BAH31195.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=169
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/144 (62%), Positives = 116/144 (81%), Gaps = 1/144 (0%)
Query 8 NGVPSTLTTIPLADPHA-GPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLT 66
+GVP+T+++IPL D A P E +IG L+KDAT Q+STLVRAEVELA+AE+T +VKKGL
Sbjct 14 DGVPNTVSSIPLTDVDARTPGEATIGALVKDATAQVSTLVRAEVELAKAEVTGEVKKGLQ 73
Query 67 GSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVR 126
GSVFFI + V +S+FFFFFF+AE+LDTW+ RW+AFL+VF IMVV TA+LALLG+L+VR
Sbjct 74 GSVFFILAFTVLLFSSFFFFFFLAEMLDTWVPRWLAFLIVFLIMVVTTAILALLGYLRVR 133
Query 127 RIRGPRQTIASVKETRTALTPGHD 150
++R P +TI S+K+ + L HD
Sbjct 134 KLRAPEKTIESLKQAKNVLPGSHD 157
>gi|229494788|ref|ZP_04388544.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229318284|gb|EEN84149.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=169
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/144 (61%), Positives = 116/144 (81%), Gaps = 1/144 (0%)
Query 8 NGVPSTLTTIPLADPHA-GPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLT 66
+GVP+T+++IPL D A P E +IG L+KDAT Q+STLVRAEVELA+AE+T +VKKGL
Sbjct 14 DGVPNTVSSIPLTDVDARAPGEATIGALVKDATAQVSTLVRAEVELAKAEVTGEVKKGLQ 73
Query 67 GSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVR 126
GSVFFI + V +S+FFFFFF+AE+LDTW+ RW+AFL+VF IMVV TA+LALLG+L+VR
Sbjct 74 GSVFFILAFTVLLFSSFFFFFFLAEMLDTWVPRWLAFLIVFLIMVVTTAILALLGYLRVR 133
Query 127 RIRGPRQTIASVKETRTALTPGHD 150
++R P +TI S+K+ + + HD
Sbjct 134 KLRAPEKTIESLKQAKNVIPGSHD 157
>gi|226363648|ref|YP_002781430.1| hypothetical protein ROP_42380 [Rhodococcus opacus B4]
gi|226242137|dbj|BAH52485.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=175
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/139 (63%), Positives = 114/139 (83%), Gaps = 1/139 (0%)
Query 8 NGVPSTLTTIPLADPHAG-PAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLT 66
+GVP+T+++IPL D A P E S+G L+K AT Q+STLVRAEVELA+AE+T +VKKGL
Sbjct 16 DGVPNTVSSIPLTDVDAQTPGEASLGTLVKHATAQVSTLVRAEVELAKAEVTGEVKKGLQ 75
Query 67 GSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVR 126
GS+FFI + V +S+FFFFFF+AELLD WI RW+AFL+VF IMVVVTA+LALLG+L+VR
Sbjct 76 GSLFFILAFTVLLFSSFFFFFFLAELLDVWIARWLAFLIVFLIMVVVTAILALLGYLRVR 135
Query 127 RIRGPRQTIASVKETRTAL 145
++R P +TI S+K+ +T L
Sbjct 136 KLRAPEKTIDSLKQAKTVL 154
>gi|111021304|ref|YP_704276.1| hypothetical protein RHA1_ro04328 [Rhodococcus jostii RHA1]
gi|110820834|gb|ABG96118.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=153
Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/133 (62%), Positives = 107/133 (81%), Gaps = 1/133 (0%)
Query 14 LTTIPLADPHAG-PAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTGSVFFI 72
+++IPL D A P E S+G L+K AT Q+STL RAEVELA+AE+T +VKKGL GS+FFI
Sbjct 1 MSSIPLTDVDAQTPGEASLGTLVKHATAQVSTLFRAEVELAKAEVTGEVKKGLQGSLFFI 60
Query 73 SSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRRIRGPR 132
+ V +S+FFFFFF+AELLD WI RW+AFL+VF IMVVVTA+LALLG+L+VR++R P
Sbjct 61 LAFTVLLFSSFFFFFFLAELLDVWIARWLAFLIVFLIMVVVTALLALLGYLRVRKLRAPE 120
Query 133 QTIASVKETRTAL 145
+TI S+K+ +T L
Sbjct 121 KTIDSLKQAKTVL 133
>gi|325675278|ref|ZP_08154963.1| hypothetical protein HMPREF0724_12745 [Rhodococcus equi ATCC
33707]
gi|325553984|gb|EGD23661.1| hypothetical protein HMPREF0724_12745 [Rhodococcus equi ATCC
33707]
Length=174
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/149 (59%), Positives = 115/149 (78%), Gaps = 2/149 (1%)
Query 8 NGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTG 67
+GVP+T+++IPL DPH P SIG L++DAT Q+STL RAEVELA+AE+T +VKKGL G
Sbjct 19 DGVPTTISSIPLTDPH-NPETASIGTLVRDATAQVSTLFRAEVELAKAEVTSEVKKGLQG 77
Query 68 SVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRR 127
S+FFI +L V +S FFFFFF+AELL W+ RW +FL+VFA+M+VVT VLALLG+L+VR+
Sbjct 78 SLFFILALSVLVFSAFFFFFFLAELLSVWLDRWASFLIVFALMLVVTGVLALLGYLRVRK 137
Query 128 IRGPRQTIASVKETRTALTPGHDKTPVTP 156
+R P +TI S+K+ T L PG +P
Sbjct 138 LRAPNKTIDSLKQAATVL-PGQRPEAGSP 165
>gi|296141593|ref|YP_003648836.1| hypothetical protein Tpau_3925 [Tsukamurella paurometabola DSM
20162]
gi|296029727|gb|ADG80497.1| protein of unknown function DUF1469 [Tsukamurella paurometabola
DSM 20162]
Length=171
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/161 (51%), Positives = 115/161 (72%), Gaps = 4/161 (2%)
Query 8 NGVPSTLTTIPLADPH-AGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLT 66
G P TL+ IPL DP+ +P+IG L++DATTQ+S+LVRAEVELA+AE D+KKG+T
Sbjct 9 TGTPQTLSAIPLTDPNVTSTGDPTIGSLVRDATTQVSSLVRAEVELAKAETVADLKKGVT 68
Query 67 GSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVR 126
GSVFFI + VV YS+FFFFFF+A +++ W+ W +F +VF +MV + V A++GFL+VR
Sbjct 69 GSVFFILAGVVLLYSSFFFFFFLAYVINIWLPTWASFGIVFLLMVFIAVVAAVIGFLQVR 128
Query 127 RIRGPRQTIASVKETRTALTPGHDKTPVTPKPV---TSDRA 164
RIRGP++TI S+KE+++ L D +P TS R+
Sbjct 129 RIRGPKKTIESLKESQSLLKGDIDPATALKQPAGATTSSRS 169
>gi|333917950|ref|YP_004491531.1| hypothetical protein AS9A_0272 [Amycolicicoccus subflavus DQS3-9A1]
gi|333480171|gb|AEF38731.1| hypothetical protein AS9A_0272 [Amycolicicoccus subflavus DQS3-9A1]
Length=172
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/167 (53%), Positives = 114/167 (69%), Gaps = 9/167 (5%)
Query 5 DRKNG------VPSTLTTIPLADPHA-GPAEP-SIGDLIKDATTQMSTLVRAEVELARAE 56
DR NG VP T+ +IPL+D A P + SIG+L+K+ATT +STL RAEVELA++E
Sbjct 5 DRSNGRFTGDGVPRTVASIPLSDADARQPGQHVSIGELVKEATTHVSTLFRAEVELAKSE 64
Query 57 ITRDVKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAV 116
+T +VKKG+ GS+FF+ + V+ +S FFFFFFVAELLDTW+ RW AFL+VF IMV+ AV
Sbjct 65 VTSEVKKGVKGSIFFVVAGVILLFSLFFFFFFVAELLDTWVSRWAAFLIVFGIMVLAAAV 124
Query 117 LALLGFLKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTSDR 163
LLG+L+VR IR P TI SVK L PG + V + + R
Sbjct 125 FGLLGYLRVRAIRKPEHTIESVKGLSEVL-PGSASSSVDRQLTAAKR 170
>gi|312137996|ref|YP_004005332.1| integral membrane protein [Rhodococcus equi 103S]
gi|311887335|emb|CBH46646.1| putative integral membrane protein [Rhodococcus equi 103S]
Length=158
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/142 (60%), Positives = 113/142 (80%), Gaps = 2/142 (1%)
Query 8 NGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTG 67
+GVP+T+++IPL DPH P SIG L++DAT Q+STL RAEVELA+AE+T +VKKG+ G
Sbjct 3 DGVPTTISSIPLTDPH-NPETASIGTLVRDATAQVSTLFRAEVELAKAEVTSEVKKGVQG 61
Query 68 SVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRR 127
S+FFI +L V +S FFFFFF+AELL W+ RW +FL+VFA+M+VVT VLALLG+L+VR+
Sbjct 62 SLFFILALSVLVFSAFFFFFFLAELLSVWLDRWASFLIVFALMLVVTGVLALLGYLRVRK 121
Query 128 IRGPRQTIASVKETRTALTPGH 149
+R P +TI S+K+ T L PG
Sbjct 122 LRAPNKTIDSLKQAATVL-PGQ 142
>gi|300790627|ref|YP_003770918.1| hypothetical protein AMED_8823 [Amycolatopsis mediterranei U32]
gi|299800141|gb|ADJ50516.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340532316|gb|AEK47521.1| hypothetical protein RAM_45270 [Amycolatopsis mediterranei S699]
Length=163
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/132 (52%), Positives = 94/132 (72%), Gaps = 1/132 (0%)
Query 17 IPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTGSVFFISSLV 76
+PL+ P + S+G L+ DAT +STLVRAE+ELA++E+ +VKKGL G+VFF+ +L
Sbjct 20 LPLSSASDIPGDQSLGRLVGDATQHISTLVRAEMELAKSELVGEVKKGLKGAVFFLIALT 79
Query 77 VGFYSTFFFFFFVAELLDTWI-WRWVAFLLVFAIMVVVTAVLALLGFLKVRRIRGPRQTI 135
V YSTFF FFF AE L W+ +RW+AF +VF +M++V V LG+ KV++ + P +TI
Sbjct 80 VFLYSTFFLFFFAAEGLAEWVRYRWIAFGIVFVLMLIVAGVAGFLGYRKVKKFKAPERTI 139
Query 136 ASVKETRTALTP 147
ASVKET AL P
Sbjct 140 ASVKETAAALKP 151
>gi|343926480|ref|ZP_08765985.1| hypothetical protein GOALK_060_01440 [Gordonia alkanivorans NBRC
16433]
gi|343763718|dbj|GAA12911.1| hypothetical protein GOALK_060_01440 [Gordonia alkanivorans NBRC
16433]
Length=170
Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/160 (48%), Positives = 112/160 (70%), Gaps = 8/160 (5%)
Query 6 RKNGVPS----TLTTIPLADPHAGP-AEPSIGDLIKDATTQMSTLVRAEVELARAEITRD 60
++G+P ++ +IPL+D +AGP EPSIG L+KDAT +STL R+EV LA+AE+ +
Sbjct 4 NEHGLPEAGRDSVPSIPLSDANAGPNGEPSIGSLVKDATASVSTLFRSEVALAKAELVGE 63
Query 61 VKKGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALL 120
KK G+ I + V+ YS+FFFFFF+AELLD ++WRW+AFL+VF I+VVVT + A +
Sbjct 64 AKKAGAGTGLLIVAGVMALYSSFFFFFFLAELLDEFVWRWLAFLIVFLILVVVTCIAAFV 123
Query 121 GFLKVRRIRGPRQTIASVKETRTAL---TPGHDKTPVTPK 157
G++ +++RGP++T+ SV E T L PGH + P P+
Sbjct 124 GYIFFKKVRGPKKTMESVNELSTVLPHRGPGHPQAPAHPR 163
>gi|291010074|ref|ZP_06568047.1| hypothetical protein SeryN2_36645 [Saccharopolyspora erythraea
NRRL 2338]
Length=167
Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/148 (49%), Positives = 102/148 (69%), Gaps = 3/148 (2%)
Query 12 STLTTIPLADPHAGPAE-PSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTGSVF 70
S +T+IPL++ GP SIG L++DATT +STLVR+E+ELA+AE+ +VKKG+ GSV+
Sbjct 18 SAVTSIPLSEEGTGPDNGQSIGALVRDATTHLSTLVRSEMELAKAELAGEVKKGVKGSVY 77
Query 71 FISSLVVGFYSTFFFFFFVAE-LLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRRIR 129
FI +L V +S FF FF +AE L +WRW AF +VF M++V V ALLG+ +VR+IR
Sbjct 78 FILALSVLGFSMFFLFFTLAEGLAQLGLWRWAAFGIVFLFMLLVAGVFALLGYRRVRKIR 137
Query 130 GPRQTIASVKETRTALTPGHDKTPVTPK 157
P++TI S+K+T +T H + K
Sbjct 138 APKRTIESLKDT-AQITRRHGEDKAVEK 164
>gi|134096949|ref|YP_001102610.1| hypothetical protein SACE_0335 [Saccharopolyspora erythraea NRRL
2338]
gi|133909572|emb|CAL99684.1| protein of unknown function DUF1469 [Saccharopolyspora erythraea
NRRL 2338]
Length=170
Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/148 (49%), Positives = 102/148 (69%), Gaps = 3/148 (2%)
Query 12 STLTTIPLADPHAGPAE-PSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTGSVF 70
S +T+IPL++ GP SIG L++DATT +STLVR+E+ELA+AE+ +VKKG+ GSV+
Sbjct 21 SAVTSIPLSEEGTGPDNGQSIGALVRDATTHLSTLVRSEMELAKAELAGEVKKGVKGSVY 80
Query 71 FISSLVVGFYSTFFFFFFVAE-LLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRRIR 129
FI +L V +S FF FF +AE L +WRW AF +VF M++V V ALLG+ +VR+IR
Sbjct 81 FILALSVLGFSMFFLFFTLAEGLAQLGLWRWAAFGIVFLFMLLVAGVFALLGYRRVRKIR 140
Query 130 GPRQTIASVKETRTALTPGHDKTPVTPK 157
P++TI S+K+T +T H + K
Sbjct 141 APKRTIESLKDT-AQITRRHGEDKAVEK 167
>gi|324997486|ref|ZP_08118598.1| hypothetical protein PseP1_01916 [Pseudonocardia sp. P1]
Length=172
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/137 (47%), Positives = 93/137 (68%), Gaps = 1/137 (0%)
Query 10 VPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTGSV 69
VP L +IPL P GP + S+G L KD TT +STLVR+EVELA+AE++ +VKKG+ GSV
Sbjct 14 VPPVLPSIPLT-PEPGPRDASLGALAKDVTTHLSTLVRSEVELAKAEVSAEVKKGVQGSV 72
Query 70 FFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRRIR 129
FF+ + +G +S F+ FF +AE L W+ R F + F +M++ + LG+L+VR+IR
Sbjct 73 FFVIAAAIGLFSLFYLFFTLAEFLSLWLNRAAGFGITFLVMLLTAGLFGFLGYLRVRKIR 132
Query 130 GPRQTIASVKETRTALT 146
P +TI S+K++ LT
Sbjct 133 KPERTIDSLKDSAQVLT 149
>gi|302530864|ref|ZP_07283206.1| predicted protein [Streptomyces sp. AA4]
gi|302439759|gb|EFL11575.1| predicted protein [Streptomyces sp. AA4]
Length=172
Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/138 (52%), Positives = 92/138 (67%), Gaps = 4/138 (2%)
Query 17 IPLA-DPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTGSVFFISSL 75
+PL+ D A +E SIG L+ DAT +STLVRAE+ELA+AE+ ++ KK L G+VFF+ +L
Sbjct 27 LPLSSDEEAAASEQSIGKLVGDATQHLSTLVRAEIELAKAELAQEAKKALKGTVFFLIAL 86
Query 76 VVGFYSTFFFFFFVAE-LLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRRIRGPRQT 134
V YSTFF F +AE L D W RW AF VF +M+V TA A LG+ KV+++R P +T
Sbjct 87 TVFLYSTFFLFLLIAEGLSDWWGIRWPAFATVFGLMLVTTAATAFLGWRKVKKLRAPERT 146
Query 135 IASVKETRTAL--TPGHD 150
I SVKET A P D
Sbjct 147 ITSVKETAEAFKRKPAED 164
>gi|227502470|ref|ZP_03932519.1| integral membrane protein [Corynebacterium accolens ATCC 49725]
gi|306835041|ref|ZP_07468087.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49726]
gi|227076839|gb|EEI14802.1| integral membrane protein [Corynebacterium accolens ATCC 49725]
gi|304569099|gb|EFM44618.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49726]
Length=167
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/144 (47%), Positives = 96/144 (67%), Gaps = 1/144 (0%)
Query 14 LTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTGSVFFIS 73
+ +IPL+D A +E SIG L+ +AT QMS LVR+EVELA+ E+ + KKG G+ FF +
Sbjct 18 VNSIPLSDVDASSSETSIGKLVSNATEQMSQLVRSEVELAKTELAQSAKKGGIGAGFFGA 77
Query 74 SLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRRIRGPRQ 133
+ + YS+FFFF FVAELL W+ RW A+L+VF +M+V LALLG V++++ P++
Sbjct 78 AGTIALYSSFFFFIFVAELLALWLDRWAAYLIVFLVMIVAAGALALLGVKNVKKVKAPQK 137
Query 134 TIASVKETRTALTPGHDKTPVTPK 157
TI S KE + L PG + + K
Sbjct 138 TIDSTKELKN-LIPGKAQKSLDRK 160
>gi|68537061|ref|YP_251766.1| hypothetical protein jk1966 [Corynebacterium jeikeium K411]
gi|68264660|emb|CAI38148.1| hypothetical protein jk1966 [Corynebacterium jeikeium K411]
Length=169
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/156 (43%), Positives = 99/156 (64%), Gaps = 4/156 (2%)
Query 5 DRKNGVPSTLTTIPLAD--PHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVK 62
DR + P + IPL+D HA + SI DL+KDA+ Q+S+LVR+EVELA+ EI K
Sbjct 12 DRDSFNPK-VNAIPLSDVDTHA-KGQASISDLVKDASAQVSSLVRSEVELAKTEIATSAK 69
Query 63 KGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGF 122
K G F ++ ++ YS+FF FF +AE LDT++WRW AFL+VF M+V+ A+LAL+G
Sbjct 70 KAGIGVGLFGAAAIILAYSSFFLFFTIAEALDTFMWRWAAFLVVFLFMLVLVAILALVGL 129
Query 123 LKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKP 158
+V+ ++ P +TI SV E +T + + +P
Sbjct 130 KQVKGVKKPEKTIESVGELKTVIPQKGKNSSSARRP 165
>gi|260579405|ref|ZP_05847287.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
gi|258602534|gb|EEW15829.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
Length=161
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/156 (43%), Positives = 99/156 (64%), Gaps = 4/156 (2%)
Query 5 DRKNGVPSTLTTIPLAD--PHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVK 62
DR + P + IPL+D HA + SI DL+KDA+ Q+S+LVR+EVELA+ EI K
Sbjct 4 DRDSFNPK-VNAIPLSDVDTHA-KGQASISDLVKDASAQVSSLVRSEVELAKTEIATSAK 61
Query 63 KGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGF 122
K G F ++ ++ YS+FF FF +AE LDT++WRW AFL+VF M+V+ A+LAL+G
Sbjct 62 KAGIGVGLFGAAAIILAYSSFFLFFTIAEALDTFMWRWAAFLVVFLFMLVLVAILALVGL 121
Query 123 LKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKP 158
+V+ ++ P +TI SV E +T + + +P
Sbjct 122 KQVKGVKKPEKTIESVGELKTVIPQKGKNSSSARRP 157
>gi|54022317|ref|YP_116559.1| hypothetical protein nfa3530 [Nocardia farcinica IFM 10152]
gi|54013825|dbj|BAD55195.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=168
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/161 (51%), Positives = 110/161 (69%), Gaps = 7/161 (4%)
Query 5 DRKNGVPSTLTTIPL--ADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVK 62
D ++G ST+++IPL A+P + G L++DA QMSTLVRAEVELA+AE+T ++K
Sbjct 11 DARSG--STVSSIPLTDANPPGSAS---FGALVRDAAEQMSTLVRAEVELAKAEVTGEIK 65
Query 63 KGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGF 122
KGL GSVFFI +L V +STFFFFFF+ ELLD W+ RW AFL+VF +M+ TAVL LG+
Sbjct 66 KGLQGSVFFILALTVLLFSTFFFFFFLGELLDVWLARWAAFLIVFLLMIAATAVLGFLGY 125
Query 123 LKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTSDR 163
+V+++R P +TI S+K+ RT L G + V R
Sbjct 126 RRVKKLRAPEKTIDSLKQARTVLPSGFGQAAHEDHLVLEKR 166
>gi|331694301|ref|YP_004330540.1| integral membrane protein [Pseudonocardia dioxanivorans CB1190]
gi|326948990|gb|AEA22687.1| integral membrane protein [Pseudonocardia dioxanivorans CB1190]
Length=161
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/150 (50%), Positives = 105/150 (70%), Gaps = 4/150 (2%)
Query 10 VPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTGSV 69
VP L +IPL+ P + S+G L+KD TT +S+LVR+EVELA+AE+T +VKKG+ GS+
Sbjct 12 VPPVLPSIPLSADPVRPEDQSVGGLVKDVTTHLSSLVRSEVELAKAEVTSEVKKGVQGSI 71
Query 70 FFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRRIR 129
FFI +L + +S FFFFF +AELL W+ R AF +VF +M++V + ALLG+L+VRRIR
Sbjct 72 FFIVALTIVLFSLFFFFFALAELLAIWLNRAAAFAIVFGLMILVAGLFALLGYLRVRRIR 131
Query 130 GPRQTIASVKETRTALT----PGHDKTPVT 155
P +TI+S+K+T L PG + +T
Sbjct 132 KPERTISSLKDTAQVLGSRGRPGENTPELT 161
>gi|258650971|ref|YP_003200127.1| hypothetical protein Namu_0724 [Nakamurella multipartita DSM
44233]
gi|258554196|gb|ACV77138.1| protein of unknown function DUF1469 [Nakamurella multipartita
DSM 44233]
Length=158
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/128 (48%), Positives = 85/128 (67%), Gaps = 0/128 (0%)
Query 12 STLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTGSVFF 71
ST IPL S+G+L+KD TT MSTLVR+E+ELA+ EIT+ VK G TG FF
Sbjct 18 STGAQIPLVTEPTIDRNASMGELVKDVTTHMSTLVRSEIELAKLEITQTVKTGATGGAFF 77
Query 72 ISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRRIRGP 131
+ V+G +S FFF+F VA +L W+ W AF +VF +MV++ + A LG KV+++R P
Sbjct 78 AVAGVIGAFSMFFFWFMVAWILAIWLPVWAAFTIVFVVMVLMAGLFAFLGLRKVKKVRKP 137
Query 132 RQTIASVK 139
+TIAS++
Sbjct 138 EKTIASLE 145
>gi|213966017|ref|ZP_03394206.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
gi|213951312|gb|EEB62705.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
Length=166
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/151 (45%), Positives = 97/151 (65%), Gaps = 1/151 (0%)
Query 8 NGVPSTLTTIPLADPHAGPA-EPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLT 66
+G +T IPL+D + + + S+G L+ +A++Q+S LVR+E+ELA+AEI + KKG
Sbjct 12 DGTEPRVTAIPLSDVDSNASGDASVGQLVSNASSQISALVRSEIELAKAEIAGEAKKGAV 71
Query 67 GSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVR 126
G FF + VV YS+FFFFFF+ LLD W+ W AFL+VF +M+V+ V ALLG KV+
Sbjct 72 GGGFFAVAGVVALYSSFFFFFFLGWLLDVWLPTWAAFLIVFVLMLVIAGVAALLGLKKVK 131
Query 127 RIRGPRQTIASVKETRTALTPGHDKTPVTPK 157
IR P +TI S++E + + G K P
Sbjct 132 SIRKPEKTIESMQELKGVVPSGSAKKSSQPN 162
>gi|227505655|ref|ZP_03935704.1| transmembrane protein [Corynebacterium striatum ATCC 6940]
gi|227197808|gb|EEI77856.1| transmembrane protein [Corynebacterium striatum ATCC 6940]
Length=164
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/137 (47%), Positives = 92/137 (68%), Gaps = 2/137 (1%)
Query 14 LTTIPLADPHAG-PAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTGSVFFI 72
+ IPL+D P E S+G L+ +AT QMS LVR+EVELA+ E+ + KKG G+ F
Sbjct 18 VNAIPLSDADTSRPGEVSVGQLVSNATEQMSQLVRSEVELAKTELAQSAKKGGIGAGMFG 77
Query 73 SSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRRIRGPR 132
+ + YS+FFFFFF+AELLD W+ RW AFL+VF IM+V+ A++ +GF +++++ P
Sbjct 78 VAGTIALYSSFFFFFFLAELLDLWLDRWAAFLIVFLIMLVLAAIVGFIGFKNIKKVKAPE 137
Query 133 QTIASVKETRTALTPGH 149
+TI S KE + L PG
Sbjct 138 KTIQSTKELKK-LVPGK 153
>gi|227832047|ref|YP_002833754.1| hypothetical protein cauri_0217 [Corynebacterium aurimucosum
ATCC 700975]
gi|262184099|ref|ZP_06043520.1| hypothetical protein CaurA7_08916 [Corynebacterium aurimucosum
ATCC 700975]
gi|227453063|gb|ACP31816.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
Length=164
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/151 (47%), Positives = 96/151 (64%), Gaps = 2/151 (1%)
Query 5 DRKNGVPSTLTTIPLADPHAGP-AEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKK 63
D N + IPL+D + E SIG L+ +AT QMS LVR+EVELA+ E+ KK
Sbjct 9 DGSNKFAPKVDGIPLSDANTSRRGEASIGQLVSNATEQMSQLVRSEVELAKTELAASAKK 68
Query 64 GLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFL 123
G G+ F + V YS+FFFFFF+AELL W+ RW AFL+VF IMVV+ AV+A +GF
Sbjct 69 GGIGAGMFGVAGTVALYSSFFFFFFLAELLAVWLDRWAAFLIVFLIMVVLAAVVAFIGFK 128
Query 124 KVRRIRGPRQTIASVKETRTALTPGHDKTPV 154
+V++++ P +TI S KE + L PG + +
Sbjct 129 QVKQVKAPEKTIQSTKELKK-LVPGKAEKSI 158
>gi|256374415|ref|YP_003098075.1| hypothetical protein Amir_0260 [Actinosynnema mirum DSM 43827]
gi|255918718|gb|ACU34229.1| protein of unknown function DUF1469 [Actinosynnema mirum DSM
43827]
Length=155
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/146 (49%), Positives = 98/146 (68%), Gaps = 2/146 (1%)
Query 8 NGVPSTLTTIPLADPHAG--PAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGL 65
P + +IPL +A E SIG L++DAT +STL+RAEVELA+AE+T +VK+GL
Sbjct 6 ENTPPPIPSIPLTAENASTIAGETSIGGLVRDATAHVSTLLRAEVELAKAEVTHEVKRGL 65
Query 66 TGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKV 125
GSVFFI +LVV +S FFFF FVAEL+ W+ W +L+VF +M+ +T +L LLG+ K+
Sbjct 66 KGSVFFILALVVLSFSLFFFFMFVAELIAVWLPVWAGYLIVFGLMIGITVLLGLLGYRKM 125
Query 126 RRIRGPRQTIASVKETRTALTPGHDK 151
+ +R P +TI S KET L D+
Sbjct 126 KTLRAPTRTIESAKETVAVLRRRDDQ 151
>gi|255324186|ref|ZP_05365308.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
gi|311741051|ref|ZP_07714876.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
ATCC 33035]
gi|255298702|gb|EET77997.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
gi|311303853|gb|EFQ79931.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
ATCC 33035]
Length=167
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/144 (45%), Positives = 94/144 (66%), Gaps = 1/144 (0%)
Query 14 LTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTGSVFFIS 73
+ +IPL+D +E S+G L+ +AT QMS LVR+EVELA+ E+ KKG G+ F
Sbjct 18 VNSIPLSDVDTSSSETSVGQLVSNATEQMSQLVRSEVELAKTELAESAKKGGIGAGLFGG 77
Query 74 SLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRRIRGPRQ 133
+ + YS+FFFFFF+AELL W+ RW AFL+VF IM+V+ +LA +G V++++ P++
Sbjct 78 AGTIALYSSFFFFFFLAELLAVWLDRWAAFLIVFLIMIVLAGILAFVGLKNVKQVKAPQK 137
Query 134 TIASVKETRTALTPGHDKTPVTPK 157
TI S KE + L PG + + K
Sbjct 138 TIDSTKELKN-LVPGKAQKSLDRK 160
>gi|300857629|ref|YP_003782612.1| hypothetical protein cpfrc_00212 [Corynebacterium pseudotuberculosis
FRC41]
gi|300685083|gb|ADK28005.1| hypothetical protein cpfrc_00212 [Corynebacterium pseudotuberculosis
FRC41]
gi|302205367|gb|ADL09709.1| Hypothetical protein CpC231_0215 [Corynebacterium pseudotuberculosis
C231]
gi|302329921|gb|ADL20115.1| Hypothetical protein Cp1002_0212 [Corynebacterium pseudotuberculosis
1002]
gi|308275605|gb|ADO25504.1| Transmembrane protein [Corynebacterium pseudotuberculosis I19]
gi|341824032|gb|AEK91553.1| Hypothetical protein CpPAT10_0218 [Corynebacterium pseudotuberculosis
PAT10]
Length=166
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/154 (48%), Positives = 99/154 (65%), Gaps = 2/154 (1%)
Query 5 DRKNGVPSTLTTIPLADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKG 64
D + + + IPL D A + SIG L+ DAT QMS+L RAEVELA+ E+ + KKG
Sbjct 10 DGADQFDAKVNGIPLTDVDA-TNKGSIGSLVSDATAQMSSLFRAEVELAKTELAAEAKKG 68
Query 65 LTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLK 124
+ G F + + YS+FFFFFF+AELL W+ RW AFL+VF IM+V+ A+LAL+GF K
Sbjct 69 VIGGGLFGVAGTIALYSSFFFFFFLAELLSVWLDRWAAFLIVFLIMIVLAALLALVGFKK 128
Query 125 VRRIRGPRQTIASVKETRTALTPGHDKTPVTPKP 158
V++I P+QTI SV E + L PG + + K
Sbjct 129 VKKIGKPKQTIQSVTELKN-LVPGKAQANLEAKQ 161
>gi|296118082|ref|ZP_06836664.1| putative membrane protein [Corynebacterium ammoniagenes DSM 20306]
gi|295968968|gb|EFG82211.1| putative membrane protein [Corynebacterium ammoniagenes DSM 20306]
Length=168
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/146 (45%), Positives = 97/146 (67%), Gaps = 3/146 (2%)
Query 14 LTTIPLAD-PHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTGSVFFI 72
+ +IPL+D + P E SIG L+ +AT Q+STLVR+E+ELA+ E+ KKG G+ F
Sbjct 18 VNSIPLSDVDTSKPGETSIGTLVSNATEQISTLVRSEIELAKTELAASAKKGGIGAGLFG 77
Query 73 SSLVVGFYSTFFFFFFVAELL-DTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRRIRGP 131
++ + YS+FFFFFF+AELL W RW A+L+VF IM+V+ +LA +GF ++++++ P
Sbjct 78 AAGTIALYSSFFFFFFLAELLTHLWFDRWAAYLIVFLIMLVIAGLLAAVGFSQIKKVKKP 137
Query 132 RQTIASVKETRTALTPGHDKTPVTPK 157
+TI SV E + L PG K V +
Sbjct 138 EKTIQSVGELKH-LKPGKAKDAVEKR 162
>gi|334563451|ref|ZP_08516442.1| hypothetical protein CbovD2_02665 [Corynebacterium bovis DSM
20582]
Length=169
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/135 (44%), Positives = 92/135 (69%), Gaps = 2/135 (1%)
Query 5 DRKNGVPSTLTTIPLADPHA-GPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKK 63
DR + P + IPL+D G + SIG L+KDA+ Q+STL+R+E+ELA+ E+ KK
Sbjct 12 DRDSFNPQ-VNAIPLSDVDTHGKGQGSIGRLVKDASAQVSTLIRSEIELAKTEVAGAAKK 70
Query 64 GLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFL 123
F ++ V+ YS+FF FF +AE+LDTW+ RW+AFL+VF +M+V+ AVLA++G
Sbjct 71 AGIAVGLFGAAGVILAYSSFFLFFTIAEVLDTWMPRWLAFLIVFLVMIVLVAVLAVIGIS 130
Query 124 KVRRIRGPRQTIASV 138
+++ ++ P +TI S+
Sbjct 131 QLKGVKKPEKTIDSL 145
>gi|19551548|ref|NP_599550.1| hypothetical protein NCgl0293 [Corynebacterium glutamicum ATCC
13032]
gi|21323062|dbj|BAB97691.1| Hypothetical membrane protein [Corynebacterium glutamicum ATCC
13032]
Length=183
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/135 (49%), Positives = 87/135 (65%), Gaps = 2/135 (1%)
Query 16 TIPLADPHAG-PAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTGSVFFISS 74
+IPL+D E SIG LI +AT+QMS+L RAEVELA+ E+ + KK G F +
Sbjct 21 SIPLSDVDTSVSGEASIGTLISNATSQMSSLFRAEVELAKTELAGEAKKAAIGGGAFSVA 80
Query 75 LVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRRIRGPRQT 134
V+ YS+FFFFFFVA LL WI W AFL+VF M+V+ A LAL G+ KV+++ P+ T
Sbjct 81 GVIALYSSFFFFFFVAALLSEWIKPWAAFLIVFLFMLVIAAALALFGWRKVKKMGAPKNT 140
Query 135 IASVKETRTALTPGH 149
I SV + + L PG
Sbjct 141 IQSVNQLKN-LVPGQ 154
>gi|145294429|ref|YP_001137250.1| hypothetical protein cgR_0384 [Corynebacterium glutamicum R]
gi|140844349|dbj|BAF53348.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045220|gb|EGV40893.1| hypothetical protein CgS9114_06022 [Corynebacterium glutamicum
S9114]
Length=183
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/135 (49%), Positives = 87/135 (65%), Gaps = 2/135 (1%)
Query 16 TIPLADPHAG-PAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVKKGLTGSVFFISS 74
+IPL+D E SIG LI +AT+QMS+L RAEVELA+ E+ + KK G F +
Sbjct 21 SIPLSDVDTSVSGEASIGTLISNATSQMSSLFRAEVELAKTELAGEAKKAAIGGGAFSVA 80
Query 75 LVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGFLKVRRIRGPRQT 134
V+ YS+FFFFFFVA LL WI W AFL+VF M+V+ A LAL G+ KV+++ P+ T
Sbjct 81 GVIALYSSFFFFFFVAALLSEWIKPWAAFLIVFLFMLVIAAALALFGWRKVKKMGAPKNT 140
Query 135 IASVKETRTALTPGH 149
I SV + + L PG
Sbjct 141 IQSVNQLKN-LVPGQ 154
>gi|237786545|ref|YP_002907250.1| hypothetical protein ckrop_1999 [Corynebacterium kroppenstedtii
DSM 44385]
gi|237759457|gb|ACR18707.1| hypothetical protein ckrop_1999 [Corynebacterium kroppenstedtii
DSM 44385]
Length=174
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/160 (41%), Positives = 100/160 (63%), Gaps = 3/160 (1%)
Query 5 DRKNGVPSTLTTIPL--ADPHAGPAEPSIGDLIKDATTQMSTLVRAEVELARAEITRDVK 62
D N V + +IPL AD HA + SI L+KDA+ Q++TLVR E+ELA+AE+T+ VK
Sbjct 12 DSSNSVFPEVGSIPLRDADTHA-AGQGSINRLVKDASGQITTLVRTEIELAKAELTQSVK 70
Query 63 KGLTGSVFFISSLVVGFYSTFFFFFFVAELLDTWIWRWVAFLLVFAIMVVVTAVLALLGF 122
KG G F + ++ F+S FF FF +AE+LD W++RW AF +VFA M+++ + AL+G
Sbjct 71 KGAIGGAMFAVAGIIAFFSAFFLFFTLAEVLDIWLYRWAAFAIVFAGMLLLAGIFALIGL 130
Query 123 LKVRRIRGPRQTIASVKETRTALTPGHDKTPVTPKPVTSD 162
+V++++ P TI S + + G KT + T++
Sbjct 131 KQVKQVKKPEATIDSFGKIPEVVPSGSSKTASSKNVETAE 170
Lambda K H
0.323 0.137 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 139975636738
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40