BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3674c
Length=245
Score E
Sequences producing significant alignments: (Bits) Value
gi|15843291|ref|NP_338328.1| ultraviolet N-glycosylase/AP lyase ... 499 2e-139
gi|31794844|ref|NP_857337.1| endonuclease III [Mycobacterium bov... 495 2e-138
gi|339633665|ref|YP_004725307.1| endonuclease III NTH (DNA-(apur... 494 5e-138
gi|289747510|ref|ZP_06506888.1| ultraviolet N-glycosylase/AP lya... 492 2e-137
gi|339296482|gb|AEJ48593.1| ultraviolet N-glycosylase/AP lyase [... 472 2e-131
gi|254552785|ref|ZP_05143232.1| ultraviolet N-glycosylase/AP lya... 461 4e-128
gi|183985132|ref|YP_001853423.1| endonuclease III Nth [Mycobacte... 453 1e-125
gi|339300081|gb|AEJ52191.1| ultraviolet N-glycosylase/AP lyase [... 451 3e-125
gi|240172235|ref|ZP_04750894.1| endonuclease III Nth [Mycobacter... 451 3e-125
gi|15213993|sp|Q9CB92.2|END3_MYCLE RecName: Full=Endonuclease II... 443 1e-122
gi|15828233|ref|NP_302496.1| endonuclease III [Mycobacterium lep... 442 1e-122
gi|118619415|ref|YP_907747.1| endonuclease III Nth [Mycobacteriu... 437 9e-121
gi|120406380|ref|YP_956209.1| endonuclease III [Mycobacterium va... 436 1e-120
gi|315446296|ref|YP_004079175.1| endonuclease III ;DNA-(apurinic... 435 3e-120
gi|145221965|ref|YP_001132643.1| endonuclease III [Mycobacterium... 434 7e-120
gi|118467497|ref|YP_890407.1| endonuclease III [Mycobacterium sm... 429 1e-118
gi|108801779|ref|YP_641976.1| DNA-(apurinic or apyrimidinic site... 429 2e-118
gi|126437767|ref|YP_001073458.1| DNA-(apurinic or apyrimidinic s... 429 3e-118
gi|333992592|ref|YP_004525206.1| endonuclease III Nth [Mycobacte... 415 3e-114
gi|169627522|ref|YP_001701171.1| endonuclease III protein [Mycob... 414 5e-114
gi|296166731|ref|ZP_06849155.1| endonuclease III [Mycobacterium ... 405 2e-111
gi|262200522|ref|YP_003271730.1| endonuclease III [Gordonia bron... 403 1e-110
gi|254820838|ref|ZP_05225839.1| hypothetical protein MintA_12968... 403 1e-110
gi|343926475|ref|ZP_08765980.1| endonuclease III [Gordonia alkan... 402 2e-110
gi|41406498|ref|NP_959334.1| hypothetical protein MAP0400 [Mycob... 402 3e-110
gi|342861989|ref|ZP_08718633.1| hypothetical protein MCOL_23980 ... 401 4e-110
gi|118464775|ref|YP_879737.1| endonuclease III [Mycobacterium av... 401 4e-110
gi|333917945|ref|YP_004491526.1| endonuclease III [Amycolicicocc... 399 2e-109
gi|54022312|ref|YP_116554.1| putative endonuclease III [Nocardia... 399 2e-109
gi|226303971|ref|YP_002763929.1| endonuclease III [Rhodococcus e... 397 6e-109
gi|336460824|gb|EGO39709.1| endonuclease III [Mycobacterium aviu... 394 6e-108
gi|254773460|ref|ZP_05214976.1| endonuclease III [Mycobacterium ... 393 1e-107
gi|326383486|ref|ZP_08205173.1| endonuclease III [Gordonia neofe... 390 9e-107
gi|111021299|ref|YP_704271.1| DNA-(apurinic or apyrimidinic site... 382 2e-104
gi|331700212|ref|YP_004336451.1| endonuclease III [Pseudonocardi... 381 5e-104
gi|226363643|ref|YP_002781425.1| endonuclease III [Rhodococcus o... 379 3e-103
gi|296141598|ref|YP_003648841.1| endonuclease III [Tsukamurella ... 376 1e-102
gi|325675283|ref|ZP_08154968.1| endonuclease III [Rhodococcus eq... 374 8e-102
gi|312137991|ref|YP_004005327.1| endonuclease iii [Rhodococcus e... 367 6e-100
gi|325001416|ref|ZP_08122528.1| putative endonuclease III [Pseud... 366 1e-99
gi|134096945|ref|YP_001102606.1| putative endonuclease III [Sacc... 359 2e-97
gi|302530869|ref|ZP_07283211.1| endonuclease III [Streptomyces s... 347 7e-94
gi|257057561|ref|YP_003135393.1| DNA-(apurinic or apyrimidinic s... 345 3e-93
gi|256374410|ref|YP_003098070.1| endonuclease III [Actinosynnema... 345 3e-93
gi|300790634|ref|YP_003770925.1| endonuclease III [Amycolatopsis... 343 1e-92
gi|260579410|ref|ZP_05847292.1| endonuclease III [Corynebacteriu... 338 4e-91
gi|238061480|ref|ZP_04606189.1| endonuclease III [Micromonospora... 337 1e-90
gi|68537066|ref|YP_251771.1| endonuclease III [Corynebacterium j... 334 9e-90
gi|296393534|ref|YP_003658418.1| endonuclease III [Segniliparus ... 330 8e-89
gi|317506667|ref|ZP_07964457.1| endonuclease III [Segniliparus r... 330 1e-88
>gi|15843291|ref|NP_338328.1| ultraviolet N-glycosylase/AP lyase [Mycobacterium tuberculosis
CDC1551]
gi|254233170|ref|ZP_04926496.1| endonuclease III nth [Mycobacterium tuberculosis C]
gi|308232527|ref|ZP_07664110.1| endonuclease III nth [Mycobacterium tuberculosis SUMu001]
26 more sequence titles
Length=262
Score = 499 bits (1284), Expect = 2e-139, Method: Compositional matrix adjust.
Identities = 245/245 (100%), Positives = 245/245 (100%), Gaps = 0/245 (0%)
Query 1 VPGRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNL 60
VPGRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNL
Sbjct 18 VPGRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNL 77
Query 61 TTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMD 120
TTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMD
Sbjct 78 TTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMD 137
Query 121 KLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIER 180
KLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIER
Sbjct 138 KLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIER 197
Query 181 KEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLL 240
KEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLL
Sbjct 198 KEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLL 257
Query 241 ALAGL 245
ALAGL
Sbjct 258 ALAGL 262
>gi|31794844|ref|NP_857337.1| endonuclease III [Mycobacterium bovis AF2122/97]
gi|57117142|ref|NP_218191.2| endonuclease III [Mycobacterium tuberculosis H37Rv]
gi|121639587|ref|YP_979811.1| putative endonuclease III nth [Mycobacterium bovis BCG str. Pasteur
1173P2]
42 more sequence titles
Length=245
Score = 495 bits (1275), Expect = 2e-138, Method: Compositional matrix adjust.
Identities = 244/245 (99%), Positives = 245/245 (100%), Gaps = 0/245 (0%)
Query 1 VPGRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNL 60
+PGRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNL
Sbjct 1 MPGRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNL 60
Query 61 TTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMD 120
TTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMD
Sbjct 61 TTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMD 120
Query 121 KLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIER 180
KLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIER
Sbjct 121 KLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIER 180
Query 181 KEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLL 240
KEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLL
Sbjct 181 KEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLL 240
Query 241 ALAGL 245
ALAGL
Sbjct 241 ALAGL 245
>gi|339633665|ref|YP_004725307.1| endonuclease III NTH (DNA-(apurinic or apyrimidinic site)lyase)
[Mycobacterium africanum GM041182]
gi|339333021|emb|CCC28750.1| putative endonuclease III NTH (DNA-(apurinic or apyrimidinic
site)lyase) [Mycobacterium africanum GM041182]
Length=245
Score = 494 bits (1272), Expect = 5e-138, Method: Compositional matrix adjust.
Identities = 243/245 (99%), Positives = 245/245 (100%), Gaps = 0/245 (0%)
Query 1 VPGRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNL 60
+PGRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPL+LAVATILSAQSTDKRVNL
Sbjct 1 MPGRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLDLAVATILSAQSTDKRVNL 60
Query 61 TTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMD 120
TTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMD
Sbjct 61 TTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMD 120
Query 121 KLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIER 180
KLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIER
Sbjct 121 KLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIER 180
Query 181 KEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLL 240
KEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLL
Sbjct 181 KEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLL 240
Query 241 ALAGL 245
ALAGL
Sbjct 241 ALAGL 245
>gi|289747510|ref|ZP_06506888.1| ultraviolet N-glycosylase/AP lyase [Mycobacterium tuberculosis
02_1987]
gi|294995420|ref|ZP_06801111.1| ultraviolet N-glycosylase/AP lyase [Mycobacterium tuberculosis
210]
gi|289688038|gb|EFD55526.1| ultraviolet N-glycosylase/AP lyase [Mycobacterium tuberculosis
02_1987]
gi|326905510|gb|EGE52443.1| endonuclease III nth [Mycobacterium tuberculosis W-148]
Length=245
Score = 492 bits (1267), Expect = 2e-137, Method: Compositional matrix adjust.
Identities = 243/243 (100%), Positives = 243/243 (100%), Gaps = 0/243 (0%)
Query 3 GRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTT 62
GRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTT
Sbjct 3 GRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTT 62
Query 63 PALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKL 122
PALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKL
Sbjct 63 PALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKL 122
Query 123 VTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKE 182
VTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKE
Sbjct 123 VTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKE 182
Query 183 WTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLAL 242
WTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLAL
Sbjct 183 WTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLAL 242
Query 243 AGL 245
AGL
Sbjct 243 AGL 245
>gi|339296482|gb|AEJ48593.1| ultraviolet N-glycosylase/AP lyase [Mycobacterium tuberculosis
CCDC5079]
Length=233
Score = 472 bits (1215), Expect = 2e-131, Method: Compositional matrix adjust.
Identities = 232/233 (99%), Positives = 233/233 (100%), Gaps = 0/233 (0%)
Query 13 LVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTA 72
+VRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTA
Sbjct 1 MVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTA 60
Query 73 RDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKT 132
RDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKT
Sbjct 61 RDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKT 120
Query 133 ANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIF 192
ANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIF
Sbjct 121 ANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIF 180
Query 193 HGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
HGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL
Sbjct 181 HGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 233
>gi|254552785|ref|ZP_05143232.1| ultraviolet N-glycosylase/AP lyase [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=226
Score = 461 bits (1186), Expect = 4e-128, Method: Compositional matrix adjust.
Identities = 226/226 (100%), Positives = 226/226 (100%), Gaps = 0/226 (0%)
Query 20 MNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQAD 79
MNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQAD
Sbjct 1 MNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQAD 60
Query 80 RTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGN 139
RTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGN
Sbjct 61 RTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGN 120
Query 140 AFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCH 199
AFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCH
Sbjct 121 AFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCH 180
Query 200 ARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
ARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL
Sbjct 181 ARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 226
>gi|183985132|ref|YP_001853423.1| endonuclease III Nth [Mycobacterium marinum M]
gi|183178458|gb|ACC43568.1| endonuclease III Nth [Mycobacterium marinum M]
Length=260
Score = 453 bits (1165), Expect = 1e-125, Method: Compositional matrix adjust.
Identities = 217/245 (89%), Positives = 230/245 (94%), Gaps = 0/245 (0%)
Query 1 VPGRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNL 60
+P RWS ETR ALVRRARRMNR LAQAFPHVYCELDFT+PLELAVATILSAQSTDKRVNL
Sbjct 16 LPKRWSEETRTALVRRARRMNRKLAQAFPHVYCELDFTSPLELAVATILSAQSTDKRVNL 75
Query 61 TTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMD 120
TTP LF +Y+TA DYAQADR ELE+LIRPTGFYRNKA SLIGLGQALVERF G+VPATM+
Sbjct 76 TTPDLFVKYQTALDYAQADRAELENLIRPTGFYRNKANSLIGLGQALVERFDGQVPATME 135
Query 121 KLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIER 180
+LVTLPGVGRKTANVILGNAF +PGITVDTHFGRL RRWRWT EDPVKVE AVGELIER
Sbjct 136 ELVTLPGVGRKTANVILGNAFDVPGITVDTHFGRLARRWRWTAEEDPVKVEHAVGELIER 195
Query 181 KEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLL 240
KEWTLLSHRVIFHGRRVCHAR+PACGVCVLAKDCPS+GLGPTEPLLAAPLVQGPET+HLL
Sbjct 196 KEWTLLSHRVIFHGRRVCHARKPACGVCVLAKDCPSYGLGPTEPLLAAPLVQGPETEHLL 255
Query 241 ALAGL 245
A+AGL
Sbjct 256 AMAGL 260
>gi|339300081|gb|AEJ52191.1| ultraviolet N-glycosylase/AP lyase [Mycobacterium tuberculosis
CCDC5180]
Length=222
Score = 451 bits (1161), Expect = 3e-125, Method: Compositional matrix adjust.
Identities = 221/222 (99%), Positives = 222/222 (100%), Gaps = 0/222 (0%)
Query 24 LAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQADRTEL 83
+AQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQADRTEL
Sbjct 1 MAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQADRTEL 60
Query 84 ESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGNAFGI 143
ESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGNAFGI
Sbjct 61 ESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGNAFGI 120
Query 144 PGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCHARRP 203
PGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCHARRP
Sbjct 121 PGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCHARRP 180
Query 204 ACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
ACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL
Sbjct 181 ACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 222
>gi|240172235|ref|ZP_04750894.1| endonuclease III Nth [Mycobacterium kansasii ATCC 12478]
Length=265
Score = 451 bits (1161), Expect = 3e-125, Method: Compositional matrix adjust.
Identities = 219/245 (90%), Positives = 230/245 (94%), Gaps = 0/245 (0%)
Query 1 VPGRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNL 60
V RWSAETR ALVRRARRMNR L QAFPHVYCELDFT PLELA+ATILSAQSTDKRVNL
Sbjct 21 VAKRWSAETRTALVRRARRMNRQLGQAFPHVYCELDFTNPLELALATILSAQSTDKRVNL 80
Query 61 TTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMD 120
TTPALFA+YRTA DYA+ADRTELE+LIRPTGF+RNKA +LIGLGQALVERF GEVPATM
Sbjct 81 TTPALFAKYRTALDYAKADRTELENLIRPTGFFRNKANALIGLGQALVERFDGEVPATMA 140
Query 121 KLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIER 180
+LVTLPG+GRKTANVILGNAFGIPGITVDTHFGRLVRRW WT DPVKVE AVGELIER
Sbjct 141 ELVTLPGIGRKTANVILGNAFGIPGITVDTHFGRLVRRWHWTAETDPVKVEHAVGELIER 200
Query 181 KEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLL 240
KEWT+LSHRVIFHGRRVCHAR+PACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPET+HLL
Sbjct 201 KEWTVLSHRVIFHGRRVCHARKPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETEHLL 260
Query 241 ALAGL 245
ALAGL
Sbjct 261 ALAGL 265
>gi|15213993|sp|Q9CB92.2|END3_MYCLE RecName: Full=Endonuclease III; AltName: Full=DNA-(apurinic or
apyrimidinic site) lyase
Length=245
Score = 443 bits (1139), Expect = 1e-122, Method: Compositional matrix adjust.
Identities = 216/242 (90%), Positives = 224/242 (93%), Gaps = 0/242 (0%)
Query 4 RWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTP 63
RWS ETRL LVRRARRMNRALAQAFPHVYCELDFT+PLEL VATILSAQSTDKRVNLTTP
Sbjct 4 RWSGETRLGLVRRARRMNRALAQAFPHVYCELDFTSPLELTVATILSAQSTDKRVNLTTP 63
Query 64 ALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLV 123
A+FARYR+A DY QADR ELE+ IRPTGF+RNKAASLI LGQALVERF GEVP+TM L
Sbjct 64 AVFARYRSALDYMQADRAELENFIRPTGFFRNKAASLIRLGQALVERFDGEVPSTMVDLF 123
Query 124 TLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEW 183
TLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWT EDPVKVE AVGELIER +W
Sbjct 124 TLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTAEEDPVKVEHAVGELIERDQW 183
Query 184 TLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALA 243
TLLSHRVIFHGRRVCHAR+PACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPE HLLALA
Sbjct 184 TLLSHRVIFHGRRVCHARKPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPEAGHLLALA 243
Query 244 GL 245
GL
Sbjct 244 GL 245
>gi|15828233|ref|NP_302496.1| endonuclease III [Mycobacterium leprae TN]
gi|221230710|ref|YP_002504126.1| putative endonuclease III [Mycobacterium leprae Br4923]
gi|13093926|emb|CAC31817.1| putative endonuclease III [Mycobacterium leprae]
gi|219933817|emb|CAR72399.1| putative endonuclease III [Mycobacterium leprae Br4923]
Length=253
Score = 442 bits (1138), Expect = 1e-122, Method: Compositional matrix adjust.
Identities = 216/242 (90%), Positives = 224/242 (93%), Gaps = 0/242 (0%)
Query 4 RWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTP 63
RWS ETRL LVRRARRMNRALAQAFPHVYCELDFT+PLEL VATILSAQSTDKRVNLTTP
Sbjct 12 RWSGETRLGLVRRARRMNRALAQAFPHVYCELDFTSPLELTVATILSAQSTDKRVNLTTP 71
Query 64 ALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLV 123
A+FARYR+A DY QADR ELE+ IRPTGF+RNKAASLI LGQALVERF GEVP+TM L
Sbjct 72 AVFARYRSALDYMQADRAELENFIRPTGFFRNKAASLIRLGQALVERFDGEVPSTMVDLF 131
Query 124 TLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEW 183
TLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWT EDPVKVE AVGELIER +W
Sbjct 132 TLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTAEEDPVKVEHAVGELIERDQW 191
Query 184 TLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALA 243
TLLSHRVIFHGRRVCHAR+PACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPE HLLALA
Sbjct 192 TLLSHRVIFHGRRVCHARKPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPEAGHLLALA 251
Query 244 GL 245
GL
Sbjct 252 GL 253
>gi|118619415|ref|YP_907747.1| endonuclease III Nth [Mycobacterium ulcerans Agy99]
gi|118571525|gb|ABL06276.1| endonuclease III Nth [Mycobacterium ulcerans Agy99]
Length=233
Score = 437 bits (1123), Expect = 9e-121, Method: Compositional matrix adjust.
Identities = 209/233 (90%), Positives = 222/233 (96%), Gaps = 0/233 (0%)
Query 13 LVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTA 72
+VRRARRMNR LAQAFPHVYCELDFT+PLELAVATILSAQSTDKRVNLTTP LFA+Y+TA
Sbjct 1 MVRRARRMNRKLAQAFPHVYCELDFTSPLELAVATILSAQSTDKRVNLTTPDLFAKYQTA 60
Query 73 RDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKT 132
DYAQADR ELE+LIRPTGFYRNKA SLIGLGQALVERF G+VPATM++LVTLPGVGRKT
Sbjct 61 LDYAQADRAELENLIRPTGFYRNKANSLIGLGQALVERFDGQVPATMEELVTLPGVGRKT 120
Query 133 ANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIF 192
ANVILGNAF +PGITVDTHFGRL RRWRWT EDPVKVE AVGELIERKEWTLLSHRVIF
Sbjct 121 ANVILGNAFDVPGITVDTHFGRLARRWRWTAEEDPVKVEHAVGELIERKEWTLLSHRVIF 180
Query 193 HGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
HGRRVCHAR+PACGVCVLAKDCPS+GLGPTEPLLAAPLVQGPET+HLLA+AGL
Sbjct 181 HGRRVCHARKPACGVCVLAKDCPSYGLGPTEPLLAAPLVQGPETEHLLAMAGL 233
>gi|120406380|ref|YP_956209.1| endonuclease III [Mycobacterium vanbaalenii PYR-1]
gi|119959198|gb|ABM16203.1| endonuclease III [Mycobacterium vanbaalenii PYR-1]
Length=258
Score = 436 bits (1121), Expect = 1e-120, Method: Compositional matrix adjust.
Identities = 210/242 (87%), Positives = 221/242 (92%), Gaps = 0/242 (0%)
Query 4 RWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTP 63
+W ET L LVRRARRMNR LAQAFPHVYCELDFT PLEL VATILSAQSTDKRVNLTTP
Sbjct 17 KWDEETHLGLVRRARRMNRTLAQAFPHVYCELDFTDPLELTVATILSAQSTDKRVNLTTP 76
Query 64 ALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLV 123
ALF +YRTARDYA ADRTELE LIRPTGFYRNKA SLIGLGQAL ERF G+VP T+D+LV
Sbjct 77 ALFKKYRTARDYATADRTELEELIRPTGFYRNKANSLIGLGQALEERFDGQVPRTLDELV 136
Query 124 TLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEW 183
TLPGVGRKTANVILGNAF IPGITVDTHFGRLVRRWRWT EDPVKVE VGELIER EW
Sbjct 137 TLPGVGRKTANVILGNAFDIPGITVDTHFGRLVRRWRWTAEEDPVKVEHIVGELIERSEW 196
Query 184 TLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALA 243
TLLSHRVIFHGRRVCHAR+PACGVCVLAKDCPS+G GPT+PL+AAPLV+GPET+HLLALA
Sbjct 197 TLLSHRVIFHGRRVCHARKPACGVCVLAKDCPSYGAGPTDPLIAAPLVKGPETEHLLALA 256
Query 244 GL 245
GL
Sbjct 257 GL 258
>gi|315446296|ref|YP_004079175.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase [Mycobacterium
sp. Spyr1]
gi|315264599|gb|ADU01341.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase [Mycobacterium
sp. Spyr1]
Length=260
Score = 435 bits (1118), Expect = 3e-120, Method: Compositional matrix adjust.
Identities = 208/242 (86%), Positives = 221/242 (92%), Gaps = 0/242 (0%)
Query 4 RWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTP 63
+W ET L LVRRARRMNR LAQAFPHVYCELDFT PLEL VATILSAQSTDKRVNLTTP
Sbjct 19 KWDRETHLGLVRRARRMNRTLAQAFPHVYCELDFTNPLELTVATILSAQSTDKRVNLTTP 78
Query 64 ALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLV 123
ALFA+YRTARDYA ADRTELE LIRPTGFYRNKA SLIGLGQAL ERF GEVP T+D+LV
Sbjct 79 ALFAKYRTARDYATADRTELEELIRPTGFYRNKATSLIGLGQALEERFDGEVPRTLDELV 138
Query 124 TLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEW 183
TLPG+GRKTANV+LGNAF IPGITVDTHFGRLVRRWRWT EDPVKVE VG+LIER EW
Sbjct 139 TLPGIGRKTANVVLGNAFDIPGITVDTHFGRLVRRWRWTAEEDPVKVEHIVGDLIERSEW 198
Query 184 TLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALA 243
TLLSHRVIFHGRRVCHAR+PACGVCVLAKDCPS+G GPT+PL+AA LV+GPET+HLLALA
Sbjct 199 TLLSHRVIFHGRRVCHARKPACGVCVLAKDCPSYGTGPTDPLIAAALVKGPETEHLLALA 258
Query 244 GL 245
GL
Sbjct 259 GL 260
>gi|145221965|ref|YP_001132643.1| endonuclease III [Mycobacterium gilvum PYR-GCK]
gi|145214451|gb|ABP43855.1| endonuclease III [Mycobacterium gilvum PYR-GCK]
Length=260
Score = 434 bits (1115), Expect = 7e-120, Method: Compositional matrix adjust.
Identities = 207/242 (86%), Positives = 220/242 (91%), Gaps = 0/242 (0%)
Query 4 RWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTP 63
+W ET L LVRRARRMNR L QAFPHVYCELDFT PLEL VATILSAQSTDKRVNLTTP
Sbjct 19 KWDRETHLGLVRRARRMNRTLTQAFPHVYCELDFTNPLELTVATILSAQSTDKRVNLTTP 78
Query 64 ALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLV 123
ALFA+YRTARDYA ADRTELE LIRPTGFYRNKA SLIGLGQAL ERF GEVP T+D+LV
Sbjct 79 ALFAKYRTARDYATADRTELEELIRPTGFYRNKATSLIGLGQALEERFDGEVPRTLDELV 138
Query 124 TLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEW 183
TLPG+GRKTANV+LGNAF IPGITVDTHFGRLVRRWRWT EDPVKVE VG+LIER EW
Sbjct 139 TLPGIGRKTANVVLGNAFDIPGITVDTHFGRLVRRWRWTAEEDPVKVEHIVGDLIERSEW 198
Query 184 TLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALA 243
TLLSHRVIFHGRRVCHAR+PACGVCVLAKDCPS+G GPT+PL+AA LV+GPET+HLLALA
Sbjct 199 TLLSHRVIFHGRRVCHARKPACGVCVLAKDCPSYGTGPTDPLIAAALVKGPETEHLLALA 258
Query 244 GL 245
GL
Sbjct 259 GL 260
>gi|118467497|ref|YP_890407.1| endonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|118168784|gb|ABK69680.1| endonuclease III [Mycobacterium smegmatis str. MC2 155]
Length=259
Score = 429 bits (1104), Expect = 1e-118, Method: Compositional matrix adjust.
Identities = 207/242 (86%), Positives = 219/242 (91%), Gaps = 0/242 (0%)
Query 4 RWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTP 63
+W +ET L LVRRARRMNR LA+AFPHVYCELDFT PLEL VATILSAQSTDKRVNLTTP
Sbjct 18 KWDSETHLGLVRRARRMNRTLAKAFPHVYCELDFTNPLELTVATILSAQSTDKRVNLTTP 77
Query 64 ALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLV 123
ALF +YRTA DYAQADRTELE LIRPTGFYRNKA SLI LGQ LVERF GEVP T+D+LV
Sbjct 78 ALFKKYRTALDYAQADRTELEELIRPTGFYRNKANSLIKLGQELVERFDGEVPKTLDELV 137
Query 124 TLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEW 183
TLPGVGRKTANVILGNAF IPGITVDTHFGRLVRRWRWT EDPVKVE AV ELIER EW
Sbjct 138 TLPGVGRKTANVILGNAFDIPGITVDTHFGRLVRRWRWTDHEDPVKVEFAVAELIERSEW 197
Query 184 TLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALA 243
TLLSHRVIFHGRRVCHAR+PACGVCVLAKDCPS+G+GPT+P AA LV+GPET+HLLALA
Sbjct 198 TLLSHRVIFHGRRVCHARKPACGVCVLAKDCPSYGIGPTDPPTAAALVKGPETEHLLALA 257
Query 244 GL 245
GL
Sbjct 258 GL 259
>gi|108801779|ref|YP_641976.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Mycobacterium sp. MCS]
gi|119870930|ref|YP_940882.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Mycobacterium sp. KMS]
gi|108772198|gb|ABG10920.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Mycobacterium sp. MCS]
gi|119697019|gb|ABL94092.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Mycobacterium sp. KMS]
Length=259
Score = 429 bits (1102), Expect = 2e-118, Method: Compositional matrix adjust.
Identities = 207/242 (86%), Positives = 220/242 (91%), Gaps = 0/242 (0%)
Query 4 RWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTP 63
+W ET+L LVRRARRMNRALAQAFPHVYCELDFT PLELAVATILSAQSTDKRVNLTTP
Sbjct 18 KWDNETQLGLVRRARRMNRALAQAFPHVYCELDFTNPLELAVATILSAQSTDKRVNLTTP 77
Query 64 ALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLV 123
ALF +YRTA DYAQADRTELE LIRPTGFYRNKA SLI LGQ LVERF G+VPA +D LV
Sbjct 78 ALFKKYRTALDYAQADRTELEELIRPTGFYRNKANSLIRLGQELVERFDGQVPADIDDLV 137
Query 124 TLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEW 183
TLPGVGRKTANVILGNAF +PGITVDTHFGRLVRRWRWT EDPVKVE A+G+LIER EW
Sbjct 138 TLPGVGRKTANVILGNAFEVPGITVDTHFGRLVRRWRWTAEEDPVKVEHAIGKLIERSEW 197
Query 184 TLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALA 243
TLLSHRVIFHGRRVCHAR+PACGVCVLAKDCPSFG+GPT+ AA LV+GPET+HLLALA
Sbjct 198 TLLSHRVIFHGRRVCHARKPACGVCVLAKDCPSFGIGPTDREAAAALVKGPETEHLLALA 257
Query 244 GL 245
GL
Sbjct 258 GL 259
>gi|126437767|ref|YP_001073458.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Mycobacterium sp. JLS]
gi|126237567|gb|ABO00968.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Mycobacterium sp. JLS]
Length=259
Score = 429 bits (1102), Expect = 3e-118, Method: Compositional matrix adjust.
Identities = 207/242 (86%), Positives = 220/242 (91%), Gaps = 0/242 (0%)
Query 4 RWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTP 63
+W ET+L LVRRARRMNRALAQAFPHVYCELDFT PLELAVATILSAQSTDKRVNLTTP
Sbjct 18 KWDNETQLGLVRRARRMNRALAQAFPHVYCELDFTDPLELAVATILSAQSTDKRVNLTTP 77
Query 64 ALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLV 123
ALF +YRTA DYAQADRTELE LIRPTGFYRNKA SLI LGQ LVERF G+VPA +D LV
Sbjct 78 ALFKKYRTALDYAQADRTELEELIRPTGFYRNKANSLIRLGQELVERFDGQVPADIDDLV 137
Query 124 TLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEW 183
TLPGVGRKTANVILGNAF +PGITVDTHFGRLVRRWRWT EDPVKVE A+G+LIER EW
Sbjct 138 TLPGVGRKTANVILGNAFDVPGITVDTHFGRLVRRWRWTAEEDPVKVEHAIGKLIERSEW 197
Query 184 TLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALA 243
TLLSHRVIFHGRRVCHAR+PACGVCVLAKDCPSFG+GPT+ AA LV+GPET+HLLALA
Sbjct 198 TLLSHRVIFHGRRVCHARKPACGVCVLAKDCPSFGIGPTDREAAAALVKGPETEHLLALA 257
Query 244 GL 245
GL
Sbjct 258 GL 259
>gi|333992592|ref|YP_004525206.1| endonuclease III Nth [Mycobacterium sp. JDM601]
gi|333488560|gb|AEF37952.1| endonuclease III Nth [Mycobacterium sp. JDM601]
Length=248
Score = 415 bits (1066), Expect = 3e-114, Method: Compositional matrix adjust.
Identities = 203/238 (86%), Positives = 216/238 (91%), Gaps = 0/238 (0%)
Query 8 ETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFA 67
ETR+ LVRRARRMNR LAQAFP +CELDFTTPLELAVAT+LSAQ TD RVNLTTPALFA
Sbjct 11 ETRIGLVRRARRMNRTLAQAFPDAHCELDFTTPLELAVATVLSAQCTDVRVNLTTPALFA 70
Query 68 RYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPG 127
RY A DYAQADRTELE LIRPTGFYRNKA SLI LGQALVER+ GE+P TMD+LV LPG
Sbjct 71 RYPAALDYAQADRTELEELIRPTGFYRNKATSLIKLGQALVERYDGELPDTMDELVRLPG 130
Query 128 VGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLS 187
VGRKTANVILGNAFG+PGITVDTHFGRLVRRW WT EDPVKVE AVGELIERKEWTLLS
Sbjct 131 VGRKTANVILGNAFGVPGITVDTHFGRLVRRWDWTAEEDPVKVEHAVGELIERKEWTLLS 190
Query 188 HRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
HRVIFHGRRVCH+R+PACGVCVLA+DCPSFGLGPT+ L AA LV+GPET+HLLALAGL
Sbjct 191 HRVIFHGRRVCHSRKPACGVCVLARDCPSFGLGPTDRLEAAALVRGPETEHLLALAGL 248
>gi|169627522|ref|YP_001701171.1| endonuclease III protein [Mycobacterium abscessus ATCC 19977]
gi|169239489|emb|CAM60517.1| Probable endonuclease III protein [Mycobacterium abscessus]
Length=265
Score = 414 bits (1065), Expect = 5e-114, Method: Compositional matrix adjust.
Identities = 198/241 (83%), Positives = 213/241 (89%), Gaps = 0/241 (0%)
Query 5 WSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPA 64
W ET LVRRARRMNR LAQAFPHVYCELDFT PLELAVATILSAQ TD RVN+ TPA
Sbjct 25 WKPETHTGLVRRARRMNRTLAQAFPHVYCELDFTNPLELAVATILSAQCTDVRVNMVTPA 84
Query 65 LFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVT 124
LFA+YRTA DYA A+R ELE +IR TGFYRNKA S++GLG LVERFGGE+P + LVT
Sbjct 85 LFAKYRTAEDYAGANRAELEEMIRTTGFYRNKANSIMGLGTQLVERFGGEIPPRLKDLVT 144
Query 125 LPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWT 184
LPG+GRKTANVILGNAF IPGITVDTHFGRLVRRWRWT EDPVKVE VGELIERKEWT
Sbjct 145 LPGIGRKTANVILGNAFDIPGITVDTHFGRLVRRWRWTEEEDPVKVEHLVGELIERKEWT 204
Query 185 LLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAG 244
LLSHRVIFHGRRVCHAR+PACGVCVLAKDCPS+GLGPT+P +AAPLV+GPET+HLLALAG
Sbjct 205 LLSHRVIFHGRRVCHARKPACGVCVLAKDCPSYGLGPTDPEVAAPLVKGPETEHLLALAG 264
Query 245 L 245
L
Sbjct 265 L 265
>gi|296166731|ref|ZP_06849155.1| endonuclease III [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295897901|gb|EFG77483.1| endonuclease III [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=226
Score = 405 bits (1042), Expect = 2e-111, Method: Compositional matrix adjust.
Identities = 194/226 (86%), Positives = 210/226 (93%), Gaps = 0/226 (0%)
Query 20 MNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQAD 79
MNRALAQAFP +CELDFTTPLEL VATILSAQSTDKRVNLTTPALF RY +A DYAQAD
Sbjct 1 MNRALAQAFPDAHCELDFTTPLELTVATILSAQSTDKRVNLTTPALFKRYPSALDYAQAD 60
Query 80 RTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGN 139
R ELE+LIRPTGF+RNKA SLIGLGQALVERF GEVP+TM+ LVTLPGVGRKTANVILGN
Sbjct 61 RGELENLIRPTGFFRNKATSLIGLGQALVERFDGEVPSTMEDLVTLPGVGRKTANVILGN 120
Query 140 AFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCH 199
AFG+PGITVDTHF RLV RWRWT +DPVK+E+A G+LIER EWT+LSHRVIFHGRRVCH
Sbjct 121 AFGVPGITVDTHFARLVHRWRWTADKDPVKIERAAGDLIERSEWTMLSHRVIFHGRRVCH 180
Query 200 ARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
AR+PACGVCV+AKDCPSFGLGPTEPLLAAPLV+GPET+HLLALAGL
Sbjct 181 ARKPACGVCVVAKDCPSFGLGPTEPLLAAPLVRGPETEHLLALAGL 226
>gi|262200522|ref|YP_003271730.1| endonuclease III [Gordonia bronchialis DSM 43247]
gi|262083869|gb|ACY19837.1| endonuclease III [Gordonia bronchialis DSM 43247]
Length=248
Score = 403 bits (1036), Expect = 1e-110, Method: Compositional matrix adjust.
Identities = 193/238 (82%), Positives = 209/238 (88%), Gaps = 0/238 (0%)
Query 8 ETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFA 67
ET L LVRRARRMNR L AFPHVYCELDFTTPLEL+VATILSAQ TD RVN TPALFA
Sbjct 9 ETHLGLVRRARRMNRTLQVAFPHVYCELDFTTPLELSVATILSAQCTDVRVNQVTPALFA 68
Query 68 RYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPG 127
RYRTA+DYA ADRTELE +IR TGFYRNKA S+IGLGQAL+ERF GEVP T+++LV+LPG
Sbjct 69 RYRTAQDYAGADRTELEEMIRTTGFYRNKANSIIGLGQALIERFDGEVPHTLNELVSLPG 128
Query 128 VGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLS 187
GRKTANV+LGNAFG+PGITVDTHFGRLVRRW WTT DPVKVE AVGELIERKEWT LS
Sbjct 129 FGRKTANVVLGNAFGVPGITVDTHFGRLVRRWEWTTETDPVKVEHAVGELIERKEWTDLS 188
Query 188 HRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
HRVIFHGRRVCHAR+PACGVC+LAKDCPS G GP + AA LV+GPETDHLL LAG+
Sbjct 189 HRVIFHGRRVCHARKPACGVCILAKDCPSVGTGPMDKAQAAALVKGPETDHLLELAGI 246
>gi|254820838|ref|ZP_05225839.1| hypothetical protein MintA_12968 [Mycobacterium intracellulare
ATCC 13950]
Length=226
Score = 403 bits (1036), Expect = 1e-110, Method: Compositional matrix adjust.
Identities = 194/226 (86%), Positives = 209/226 (93%), Gaps = 0/226 (0%)
Query 20 MNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQAD 79
MNRALAQAFP +CELDFTTPLEL VATILSAQSTDKRVNLTTPALF RY +A DYAQAD
Sbjct 1 MNRALAQAFPDAHCELDFTTPLELTVATILSAQSTDKRVNLTTPALFKRYPSALDYAQAD 60
Query 80 RTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGN 139
R ELE+LIRPTGF+RNKA+SLIGLGQALVERF GEVP TM +LVTLPGVGRKTANVILGN
Sbjct 61 RAELENLIRPTGFFRNKASSLIGLGQALVERFDGEVPPTMAELVTLPGVGRKTANVILGN 120
Query 140 AFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCH 199
AFGIPGITVDTHF RLV RWRWTT +DPVK+E +VGELIER EWT+LSHRVIFHGRRVCH
Sbjct 121 AFGIPGITVDTHFARLVHRWRWTTDKDPVKIEHSVGELIERSEWTMLSHRVIFHGRRVCH 180
Query 200 ARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
AR+PACGVC++AKDCPSFGLGPTE LAAPLV+GPET+HLLALAGL
Sbjct 181 ARKPACGVCLIAKDCPSFGLGPTEAPLAAPLVKGPETEHLLALAGL 226
>gi|343926475|ref|ZP_08765980.1| endonuclease III [Gordonia alkanivorans NBRC 16433]
gi|343763713|dbj|GAA12906.1| endonuclease III [Gordonia alkanivorans NBRC 16433]
Length=267
Score = 402 bits (1034), Expect = 2e-110, Method: Compositional matrix adjust.
Identities = 192/238 (81%), Positives = 208/238 (88%), Gaps = 0/238 (0%)
Query 8 ETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFA 67
ET L LVRRARRMNR L AFPHVYCELDFT PLEL+VATILSAQ TD RVN TTPALFA
Sbjct 27 ETHLGLVRRARRMNRTLKVAFPHVYCELDFTNPLELSVATILSAQCTDVRVNQTTPALFA 86
Query 68 RYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPG 127
+YRTARDYA+ADRTELE +IR TGFYRNKA S+IGLGQALVER+ GEVP + LV+LPG
Sbjct 87 KYRTARDYAEADRTELEEMIRSTGFYRNKANSIIGLGQALVERYDGEVPNKLKDLVSLPG 146
Query 128 VGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLS 187
GRKTANV+LGNAFG+PGITVDTHFGRLVRRW+WT EDPVKVE AVGELIERKEWT LS
Sbjct 147 FGRKTANVVLGNAFGVPGITVDTHFGRLVRRWQWTEEEDPVKVEHAVGELIERKEWTDLS 206
Query 188 HRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
HRVIFHGRRVCHAR+PACGVC+LAKDCPS G GP + AA LV+GPET+HLL LAGL
Sbjct 207 HRVIFHGRRVCHARKPACGVCILAKDCPSVGTGPMDKAEAAALVKGPETEHLLRLAGL 264
>gi|41406498|ref|NP_959334.1| hypothetical protein MAP0400 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41394847|gb|AAS02717.1| Nth [Mycobacterium avium subsp. paratuberculosis K-10]
Length=265
Score = 402 bits (1032), Expect = 3e-110, Method: Compositional matrix adjust.
Identities = 203/242 (84%), Positives = 221/242 (92%), Gaps = 0/242 (0%)
Query 4 RWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTP 63
RWS E+R+ALVRRARRMNR LAQAFP +CELDFTTPLEL VATILSAQSTDKRVNLTTP
Sbjct 24 RWSTESRVALVRRARRMNRILAQAFPEAHCELDFTTPLELTVATILSAQSTDKRVNLTTP 83
Query 64 ALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLV 123
ALF RY A DYA+ADR ELE+LIRPTGF+RNKA++LI LGQALVERF GEVPATM +LV
Sbjct 84 ALFKRYTCALDYARADRDELENLIRPTGFFRNKASALIRLGQALVERFDGEVPATMAELV 143
Query 124 TLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEW 183
TLPGVGRKTANVILGNAFG+PGITVDTHF RLV RWRWT +DPVK+E AVGELIER EW
Sbjct 144 TLPGVGRKTANVILGNAFGVPGITVDTHFARLVHRWRWTAEKDPVKIEHAVGELIERSEW 203
Query 184 TLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALA 243
T+LSHRVIFHGRRVCH+R+PACGVC+LAKDCPSFGLGPTEP LAA LV+GPET+HLLALA
Sbjct 204 TMLSHRVIFHGRRVCHSRKPACGVCLLAKDCPSFGLGPTEPPLAAQLVRGPETEHLLALA 263
Query 244 GL 245
GL
Sbjct 264 GL 265
>gi|342861989|ref|ZP_08718633.1| hypothetical protein MCOL_23980 [Mycobacterium colombiense CECT
3035]
gi|342130529|gb|EGT83838.1| hypothetical protein MCOL_23980 [Mycobacterium colombiense CECT
3035]
Length=226
Score = 401 bits (1031), Expect = 4e-110, Method: Compositional matrix adjust.
Identities = 191/226 (85%), Positives = 209/226 (93%), Gaps = 0/226 (0%)
Query 20 MNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQAD 79
MNRALAQAFP +CELDFTTPLEL VATILSAQSTDKRVNLTTPALF RY +A DYAQAD
Sbjct 1 MNRALAQAFPDAHCELDFTTPLELTVATILSAQSTDKRVNLTTPALFKRYPSALDYAQAD 60
Query 80 RTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGN 139
R ELE+LIRPTGF+RNKA+SLIGLGQALVERF G+VP+TM +LVTLPGVGRKTANVILGN
Sbjct 61 RDELENLIRPTGFFRNKASSLIGLGQALVERFDGDVPSTMAELVTLPGVGRKTANVILGN 120
Query 140 AFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCH 199
AFG+PGITVDTHF RLV RWRWT +D VK+E +VGELIER EWT+LSHRVIFHGRRVCH
Sbjct 121 AFGVPGITVDTHFTRLVHRWRWTADKDAVKIEHSVGELIERSEWTMLSHRVIFHGRRVCH 180
Query 200 ARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
AR+PACGVC++AKDCPSFGLGPTEP LAAPLV+GPET+HLLALAGL
Sbjct 181 ARKPACGVCLIAKDCPSFGLGPTEPALAAPLVKGPETEHLLALAGL 226
>gi|118464775|ref|YP_879737.1| endonuclease III [Mycobacterium avium 104]
gi|118166062|gb|ABK66959.1| endonuclease III [Mycobacterium avium 104]
Length=232
Score = 401 bits (1031), Expect = 4e-110, Method: Compositional matrix adjust.
Identities = 194/232 (84%), Positives = 211/232 (91%), Gaps = 0/232 (0%)
Query 14 VRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTAR 73
+RRARRMNR LAQAFP +CELDFTTPLEL VATILSAQSTDKRVNLTT ALF RY A
Sbjct 1 MRRARRMNRILAQAFPEAHCELDFTTPLELTVATILSAQSTDKRVNLTTRALFKRYTCAL 60
Query 74 DYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTA 133
DYAQADR ELE+LIRPTGF+RNKA++LI LGQALVERF GEVPATM +LVTLPGVGRKTA
Sbjct 61 DYAQADRDELENLIRPTGFFRNKASALIRLGQALVERFDGEVPATMAELVTLPGVGRKTA 120
Query 134 NVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFH 193
NVILGNAFG+PGITVDTHF RLV RWRWT +DPVK+E AVGELIER EWT+LSHRVIFH
Sbjct 121 NVILGNAFGVPGITVDTHFARLVHRWRWTAEKDPVKIEHAVGELIERSEWTMLSHRVIFH 180
Query 194 GRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
GRRVCH+R+PACGVC+LA+DCPSFGLGPTEP LAA LV+GPET+HLLALAGL
Sbjct 181 GRRVCHSRKPACGVCLLARDCPSFGLGPTEPPLAAQLVRGPETEHLLALAGL 232
>gi|333917945|ref|YP_004491526.1| endonuclease III [Amycolicicoccus subflavus DQS3-9A1]
gi|333480166|gb|AEF38726.1| Endonuclease III [Amycolicicoccus subflavus DQS3-9A1]
Length=472
Score = 399 bits (1024), Expect = 2e-109, Method: Compositional matrix adjust.
Identities = 191/236 (81%), Positives = 210/236 (89%), Gaps = 0/236 (0%)
Query 8 ETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFA 67
ETRL LVRRARRMNR L++AFP V+CELDF TPLELAVATILSAQ TDKRVN TPALFA
Sbjct 232 ETRLGLVRRARRMNRTLSEAFPEVWCELDFQTPLELAVATILSAQCTDKRVNEVTPALFA 291
Query 68 RYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPG 127
RY++ARDYA+A RTELE IRPTGFYRNKA SL+GLGQ LVE+F GEVP T+D+LVTLPG
Sbjct 292 RYQSARDYAEASRTELEEFIRPTGFYRNKATSLMGLGQGLVEKFDGEVPHTLDELVTLPG 351
Query 128 VGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLS 187
VGRKTANVILGNAFG+PG+TVDTHFGRLVRRW WT DPVKVE AV +LIE+KEWTLLS
Sbjct 352 VGRKTANVILGNAFGVPGLTVDTHFGRLVRRWGWTAETDPVKVEFAVADLIEKKEWTLLS 411
Query 188 HRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALA 243
HRVIFHGRRVCHARRPACG CVLA+DCPSFG GPT+ AA LV+GPET+HL+ALA
Sbjct 412 HRVIFHGRRVCHARRPACGACVLARDCPSFGEGPTDLEEAAALVRGPETEHLVALA 467
>gi|54022312|ref|YP_116554.1| putative endonuclease III [Nocardia farcinica IFM 10152]
gi|54013820|dbj|BAD55190.1| putative endonuclease III [Nocardia farcinica IFM 10152]
Length=280
Score = 399 bits (1024), Expect = 2e-109, Method: Compositional matrix adjust.
Identities = 191/240 (80%), Positives = 212/240 (89%), Gaps = 0/240 (0%)
Query 6 SAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPAL 65
AET+L LVRRARRMNR LA+AFP +CELDFTTPLELAVATILSAQ TD+RVN+TTPAL
Sbjct 41 QAETKLGLVRRARRMNRTLARAFPDAHCELDFTTPLELAVATILSAQCTDERVNMTTPAL 100
Query 66 FARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTL 125
FARY AR YA+A+RTELE IRPTGFYRNK +SLIGLGQALVE++ GEVP T+++LV L
Sbjct 101 FARYPDARAYAEANRTELEEYIRPTGFYRNKTSSLIGLGQALVEKYDGEVPHTLEELVQL 160
Query 126 PGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTL 185
PG+GRKTANVILGNAF +PGITVDTHFGRLVRRW WTT EDPVKVE AVGELIERK+WT+
Sbjct 161 PGIGRKTANVILGNAFDVPGITVDTHFGRLVRRWGWTTEEDPVKVEHAVGELIERKDWTM 220
Query 186 LSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
LSHRVIFHGRRVCH+RRPACG CVLAKDCPS GLGP EP AA LV+GPE +HLL + GL
Sbjct 221 LSHRVIFHGRRVCHSRRPACGACVLAKDCPSCGLGPVEPEAAAKLVKGPEREHLLGMVGL 280
>gi|226303971|ref|YP_002763929.1| endonuclease III [Rhodococcus erythropolis PR4]
gi|229492134|ref|ZP_04385943.1| endonuclease III [Rhodococcus erythropolis SK121]
gi|226183086|dbj|BAH31190.1| endonuclease III [Rhodococcus erythropolis PR4]
gi|229320922|gb|EEN86734.1| endonuclease III [Rhodococcus erythropolis SK121]
Length=261
Score = 397 bits (1021), Expect = 6e-109, Method: Compositional matrix adjust.
Identities = 193/243 (80%), Positives = 208/243 (86%), Gaps = 0/243 (0%)
Query 3 GRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTT 62
G E+ L LVRRARRMNR LA AFPHVYCELDFTTPLELAVATILSAQ TD RVN+ T
Sbjct 19 GARKEESHLGLVRRARRMNRELAVAFPHVYCELDFTTPLELAVATILSAQCTDVRVNMVT 78
Query 63 PALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKL 122
PALFARY A+ YA+ADRTELE IR TGFYRNK SLIGLGQAL+ER G+VP ++ L
Sbjct 79 PALFARYPDAKAYAEADRTELEEYIRSTGFYRNKTTSLIGLGQALLERHDGQVPNKLEDL 138
Query 123 VTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKE 182
V LPG+GRKTANV+LGNAF IPGITVDTHFGRLVRRW+WT ED VKVE AVG LIERKE
Sbjct 139 VKLPGIGRKTANVVLGNAFDIPGITVDTHFGRLVRRWKWTEEEDAVKVEHAVGALIERKE 198
Query 183 WTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLAL 242
WTLLSHRVIFHGRRVCHAR+PACGVCVLAKDCPS+GLGPT+ AA LV+GPETDHLLAL
Sbjct 199 WTLLSHRVIFHGRRVCHARKPACGVCVLAKDCPSYGLGPTDKTEAAALVKGPETDHLLAL 258
Query 243 AGL 245
AGL
Sbjct 259 AGL 261
>gi|336460824|gb|EGO39709.1| endonuclease III [Mycobacterium avium subsp. paratuberculosis
S397]
Length=226
Score = 394 bits (1012), Expect = 6e-108, Method: Compositional matrix adjust.
Identities = 190/226 (85%), Positives = 206/226 (92%), Gaps = 0/226 (0%)
Query 20 MNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQAD 79
MNR LAQAFP +CELDFTTPLEL VATILSAQSTDKRVNLTTPALF RY A DYA+AD
Sbjct 1 MNRILAQAFPEAHCELDFTTPLELTVATILSAQSTDKRVNLTTPALFKRYTCALDYARAD 60
Query 80 RTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGN 139
R ELE+LIRPTGF+RNKA++LI LGQALVERF GEVPATM +LVTLPGVGRKTANVILGN
Sbjct 61 RDELENLIRPTGFFRNKASALIRLGQALVERFDGEVPATMAELVTLPGVGRKTANVILGN 120
Query 140 AFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCH 199
AFG+PGITVDTHF RLV RWRWT +DPVK+E AVGELIER EWT+LSHRVIFHGRRVCH
Sbjct 121 AFGVPGITVDTHFARLVHRWRWTAEKDPVKIEHAVGELIERSEWTMLSHRVIFHGRRVCH 180
Query 200 ARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
+R+PACGVC+LAKDCPSFGLGPTEP LAA LV+GPET+HLLALAGL
Sbjct 181 SRKPACGVCLLAKDCPSFGLGPTEPPLAAQLVRGPETEHLLALAGL 226
>gi|254773460|ref|ZP_05214976.1| endonuclease III [Mycobacterium avium subsp. avium ATCC 25291]
Length=226
Score = 393 bits (1010), Expect = 1e-107, Method: Compositional matrix adjust.
Identities = 190/226 (85%), Positives = 205/226 (91%), Gaps = 0/226 (0%)
Query 20 MNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQAD 79
MNR LAQAFP +CELDFTTPLEL VATILSAQSTDKRVNLTT ALF RY A DYAQAD
Sbjct 1 MNRILAQAFPEAHCELDFTTPLELTVATILSAQSTDKRVNLTTRALFKRYTCALDYAQAD 60
Query 80 RTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGN 139
R ELE+LIRPTGF+RNKA++LI LGQALVERF GEVPATM +LVTLPGVGRKTANVILGN
Sbjct 61 RDELENLIRPTGFFRNKASALIRLGQALVERFDGEVPATMAELVTLPGVGRKTANVILGN 120
Query 140 AFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCH 199
AFG+PGITVDTHF RLV RWRWT +DPVK+E AVGELIER EWT+LSHRVIFHGRRVCH
Sbjct 121 AFGVPGITVDTHFARLVHRWRWTAEKDPVKIEHAVGELIERSEWTMLSHRVIFHGRRVCH 180
Query 200 ARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
+R+PACGVC+LAKDCPSFGLGPTEP LAA LV+GPET+HLLALAGL
Sbjct 181 SRKPACGVCLLAKDCPSFGLGPTEPPLAAQLVRGPETEHLLALAGL 226
>gi|326383486|ref|ZP_08205173.1| endonuclease III [Gordonia neofelifaecis NRRL B-59395]
gi|326197892|gb|EGD55079.1| endonuclease III [Gordonia neofelifaecis NRRL B-59395]
Length=250
Score = 390 bits (1002), Expect = 9e-107, Method: Compositional matrix adjust.
Identities = 185/238 (78%), Positives = 206/238 (87%), Gaps = 0/238 (0%)
Query 8 ETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFA 67
ETRL LVRRARRMNR+L AFPHVYCELDFTTPLEL+VATILSAQ TD RVN TPALFA
Sbjct 7 ETRLGLVRRARRMNRSLEAAFPHVYCELDFTTPLELSVATILSAQCTDVRVNQVTPALFA 66
Query 68 RYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPG 127
RY AR YA+ADRTELE +IR TGFYRNKA S+IGLGQALV R+GGEVP + LVTLPG
Sbjct 67 RYPDARSYAEADRTELEEMIRSTGFYRNKANSIIGLGQALVSRYGGEVPNRLKDLVTLPG 126
Query 128 VGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLS 187
GRKTANV+LGNAFG+PGITVDTHFGRLVRRW WT DPVKVE+ +GEL E+++WT LS
Sbjct 127 FGRKTANVVLGNAFGVPGITVDTHFGRLVRRWNWTQETDPVKVEREIGELFEKRDWTDLS 186
Query 188 HRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
HR+IFHGRRVCHAR+PACGVCVLAKDCPS+G GPT+ AA LV+GPET+HLL LAG+
Sbjct 187 HRIIFHGRRVCHARKPACGVCVLAKDCPSYGEGPTDKHQAAALVKGPETEHLLELAGV 244
>gi|111021299|ref|YP_704271.1| DNA-(apurinic or apyrimidinic site) lyase [Rhodococcus jostii
RHA1]
gi|110820829|gb|ABG96113.1| probable DNA-(apurinic or apyrimidinic site) lyase [Rhodococcus
jostii RHA1]
Length=281
Score = 382 bits (982), Expect = 2e-104, Method: Compositional matrix adjust.
Identities = 192/237 (82%), Positives = 210/237 (89%), Gaps = 0/237 (0%)
Query 8 ETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFA 67
ETRL LVRRARRMNR LA+AFPHVYCELDFTTPL+LAVATILSAQ TD RVN+ TPALFA
Sbjct 44 ETRLGLVRRARRMNRRLAEAFPHVYCELDFTTPLDLAVATILSAQCTDVRVNMVTPALFA 103
Query 68 RYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPG 127
RY A+ YA+A+RTELE IR TGFYRNK SLIGLGQAL+ERF GEVP + LVTLPG
Sbjct 104 RYPDAKAYAEAERTELEEYIRSTGFYRNKTNSLIGLGQALLERFDGEVPGNLKDLVTLPG 163
Query 128 VGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLS 187
+GRKTANVILGNAF +PGITVDTHFGRLVRRW+WT EDPVKVE A+G LIERKEWTLLS
Sbjct 164 IGRKTANVILGNAFDVPGITVDTHFGRLVRRWKWTEEEDPVKVEHAIGALIERKEWTLLS 223
Query 188 HRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAG 244
HRVIFHGRRVCHAR+PACGVCVLAKDCPS+GLGP +P +AA LV+GPET+HLL LAG
Sbjct 224 HRVIFHGRRVCHARKPACGVCVLAKDCPSYGLGPIDPDVAAELVRGPETEHLLRLAG 280
>gi|331700212|ref|YP_004336451.1| endonuclease III [Pseudonocardia dioxanivorans CB1190]
gi|326954901|gb|AEA28598.1| endonuclease III [Pseudonocardia dioxanivorans CB1190]
Length=299
Score = 381 bits (978), Expect = 5e-104, Method: Compositional matrix adjust.
Identities = 180/239 (76%), Positives = 207/239 (87%), Gaps = 0/239 (0%)
Query 7 AETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALF 66
E+ + RR R+ RALA A+P +CELDFTTPLELAVAT+LSAQ+TD RVN TPALF
Sbjct 49 GESSIGRARRVGRILRALAAAYPDAHCELDFTTPLELAVATVLSAQTTDVRVNEVTPALF 108
Query 67 ARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLP 126
ARYRTA DYAQADRTELE LIRPTGFYRNK +SLIGLGQA+V+RF GE+PA ++ LVTLP
Sbjct 109 ARYRTALDYAQADRTELEELIRPTGFYRNKTSSLIGLGQAVVDRFDGELPARLEDLVTLP 168
Query 127 GVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLL 186
G+GRKTANV+LGNAFG+PGITVDTHFGRLVRRW WT EDPVKVE AVG L+ +++WT++
Sbjct 169 GIGRKTANVVLGNAFGVPGITVDTHFGRLVRRWGWTDEEDPVKVEHAVGALVPKRDWTIV 228
Query 187 SHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
SH+VIFHGRRVCHAR+PACGVC LA DCP+FG GPT+P AAPLV+GPE DHLLALAGL
Sbjct 229 SHQVIFHGRRVCHARKPACGVCTLAVDCPAFGAGPTDPEKAAPLVKGPERDHLLALAGL 287
>gi|226363643|ref|YP_002781425.1| endonuclease III [Rhodococcus opacus B4]
gi|226242132|dbj|BAH52480.1| putative endonuclease III [Rhodococcus opacus B4]
Length=251
Score = 379 bits (972), Expect = 3e-103, Method: Compositional matrix adjust.
Identities = 191/237 (81%), Positives = 209/237 (89%), Gaps = 0/237 (0%)
Query 8 ETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFA 67
ETRL LVRRARRMNR LA+AFPHVYCELDFTTPL+LAVATILSAQ TD RVN+ TPALFA
Sbjct 14 ETRLGLVRRARRMNRRLAEAFPHVYCELDFTTPLDLAVATILSAQCTDVRVNMVTPALFA 73
Query 68 RYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPG 127
RY A+ YA+A+RTELE IR TGFYRNK SLIGLGQAL+ERF GEVP + LVTLPG
Sbjct 74 RYPDAKAYAEAERTELEEYIRSTGFYRNKTNSLIGLGQALLERFDGEVPGNLKDLVTLPG 133
Query 128 VGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLS 187
+GRKTANVILGNAF +PGITVDTHFGRLVRRW+WT EDPVKVE A+G LIERKEWTLLS
Sbjct 134 IGRKTANVILGNAFDVPGITVDTHFGRLVRRWKWTEEEDPVKVEHAIGALIERKEWTLLS 193
Query 188 HRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAG 244
HRVIFHGRRVCHAR+PACGVCVLA DCPS+GLGP +P +AA LV+GPET+HLL LAG
Sbjct 194 HRVIFHGRRVCHARKPACGVCVLAGDCPSYGLGPIDPDVAAGLVRGPETEHLLRLAG 250
>gi|296141598|ref|YP_003648841.1| endonuclease III [Tsukamurella paurometabola DSM 20162]
gi|296029732|gb|ADG80502.1| endonuclease III [Tsukamurella paurometabola DSM 20162]
Length=256
Score = 376 bits (966), Expect = 1e-102, Method: Compositional matrix adjust.
Identities = 180/235 (77%), Positives = 197/235 (84%), Gaps = 0/235 (0%)
Query 8 ETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFA 67
E+ LALVRRARRMNR LA AFPHVYCELDFT PLEL+VATILSAQ TD RVN TPALF
Sbjct 6 ESHLALVRRARRMNRTLATAFPHVYCELDFTNPLELSVATILSAQCTDVRVNQVTPALFD 65
Query 68 RYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPG 127
RYR+A DYA A+R ELE IR TGFYRNKA S++GLGQALV+RF GEVP M LVTLPG
Sbjct 66 RYRSAADYAGAERAELEEYIRSTGFYRNKATSIMGLGQALVDRFDGEVPRRMKDLVTLPG 125
Query 128 VGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLS 187
GRKTANV+LGNAF +PGITVDTHF RLV RW WT DPVK+E AVGELI RKEWTLLS
Sbjct 126 FGRKTANVVLGNAFDVPGITVDTHFSRLVHRWEWTQENDPVKIEHAVGELIPRKEWTLLS 185
Query 188 HRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLAL 242
HRVIFHGRRVCHAR+PACGVCVLAKDCP++G GP +P AA LV+GPE +HLL +
Sbjct 186 HRVIFHGRRVCHARKPACGVCVLAKDCPAYGTGPVDPAEAADLVKGPEREHLLEI 240
>gi|325675283|ref|ZP_08154968.1| endonuclease III [Rhodococcus equi ATCC 33707]
gi|325553989|gb|EGD23666.1| endonuclease III [Rhodococcus equi ATCC 33707]
Length=226
Score = 374 bits (959), Expect = 8e-102, Method: Compositional matrix adjust.
Identities = 178/226 (79%), Positives = 194/226 (86%), Gaps = 0/226 (0%)
Query 20 MNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQAD 79
MNR L AFPHVYCELDFTTPLEL VATILSAQ TD RVN TPALFARY AR YA+AD
Sbjct 1 MNRRLKDAFPHVYCELDFTTPLELTVATILSAQCTDVRVNQVTPALFARYPDARAYAEAD 60
Query 80 RTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGN 139
R ELE IR TGFYRNKA S+IGLGQAL+ER+ GEVP + LVTLPG+GRKTANV+LGN
Sbjct 61 RVELEEYIRSTGFYRNKATSIIGLGQALLERYDGEVPNKLKDLVTLPGIGRKTANVVLGN 120
Query 140 AFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCH 199
AFG+PGITVDTHFGRLVRRW+WT DPVKVE AVG LIERKEWT LSHRVIFHGRRVCH
Sbjct 121 AFGVPGITVDTHFGRLVRRWKWTEETDPVKVEHAVGALIERKEWTDLSHRVIFHGRRVCH 180
Query 200 ARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
AR+PACGVCVLAKDCPS+G GPT+ + AA LV+GPET+HLL LAG+
Sbjct 181 ARKPACGVCVLAKDCPSYGTGPTDKVAAAALVKGPETEHLLELAGM 226
>gi|312137991|ref|YP_004005327.1| endonuclease iii [Rhodococcus equi 103S]
gi|311887330|emb|CBH46641.1| endonuclease III [Rhodococcus equi 103S]
Length=257
Score = 367 bits (943), Expect = 6e-100, Method: Compositional matrix adjust.
Identities = 175/222 (79%), Positives = 191/222 (87%), Gaps = 0/222 (0%)
Query 24 LAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQADRTEL 83
L AFPHVYCELDFTTPLEL VATILSAQ TD RVN TPALFARY AR YA+ADR EL
Sbjct 36 LKDAFPHVYCELDFTTPLELTVATILSAQCTDVRVNQVTPALFARYPDARAYAEADRVEL 95
Query 84 ESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGNAFGI 143
E IR TGFYRNKA S+IGLGQAL+ER+ GEVP + LVTLPG+GRKTANV+LGNAFG+
Sbjct 96 EEYIRSTGFYRNKANSIIGLGQALLERYDGEVPNKLKDLVTLPGIGRKTANVVLGNAFGV 155
Query 144 PGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCHARRP 203
PGITVDTHFGRLVRRW+WT DPVKVE AVG LIERKEWT LSHRVIFHGRRVCHAR+P
Sbjct 156 PGITVDTHFGRLVRRWKWTEETDPVKVEHAVGALIERKEWTDLSHRVIFHGRRVCHARKP 215
Query 204 ACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
ACGVCVLAKDCPS+G GPT+ + AA LV+GPET+HLL LAG+
Sbjct 216 ACGVCVLAKDCPSYGTGPTDKVAAAALVKGPETEHLLELAGM 257
>gi|325001416|ref|ZP_08122528.1| putative endonuclease III [Pseudonocardia sp. P1]
Length=266
Score = 366 bits (940), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 175/239 (74%), Positives = 202/239 (85%), Gaps = 0/239 (0%)
Query 7 AETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALF 66
E + RR R+ RALA+A+PH +CELDF+TPL+LAVATILSAQ TD+RVN TPALF
Sbjct 23 GENPIGRARRVNRILRALAEAYPHAHCELDFSTPLDLAVATILSAQCTDERVNQVTPALF 82
Query 67 ARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLP 126
ARY TA YA ADRTELE LIRPTGFYRNKA SL GLG A+VE+ GGE+PAT+D+LV LP
Sbjct 83 ARYPTAAGYAGADRTELEELIRPTGFYRNKANSLTGLGAAVVEKHGGELPATLDELVALP 142
Query 127 GVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLL 186
G+GRKTANVILGNAF +PGITVDTHFGRLVRRW WTT EDPVKVE AVGEL+ R++WT++
Sbjct 143 GIGRKTANVILGNAFDVPGITVDTHFGRLVRRWGWTTEEDPVKVEHAVGELVPRRDWTIV 202
Query 187 SHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
SH VIFHGRRVCH+R+PACG C LA DCPS+GLGPT+P AA LV+G E +HLLALAG+
Sbjct 203 SHHVIFHGRRVCHSRKPACGACTLAPDCPSYGLGPTDPGEAAALVKGVEREHLLALAGI 261
>gi|134096945|ref|YP_001102606.1| putative endonuclease III [Saccharopolyspora erythraea NRRL 2338]
gi|291006613|ref|ZP_06564586.1| putative endonuclease III [Saccharopolyspora erythraea NRRL 2338]
gi|133909568|emb|CAL99680.1| putative endonuclease III [Saccharopolyspora erythraea NRRL 2338]
Length=245
Score = 359 bits (921), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 172/226 (77%), Positives = 192/226 (85%), Gaps = 0/226 (0%)
Query 20 MNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQAD 79
M RALA+A+P +CELDF TPLELAVATILSAQ TDKRVN TPALF RY TA YA AD
Sbjct 1 MLRALAEAYPEAHCELDFNTPLELAVATILSAQCTDKRVNEVTPALFKRYPTAESYAGAD 60
Query 80 RTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGN 139
R ELE +IR TGFYRNKA+SL+GLG LVER GGEVPA +D+LV LPG+GRKTANVILGN
Sbjct 61 RAELEEMIRSTGFYRNKASSLMGLGAQLVERHGGEVPARLDELVKLPGIGRKTANVILGN 120
Query 140 AFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCH 199
AF +PGITVDTHFGRLVRRW+WT EDPVKVE A+GELI RKEWT+LSH VIFHGRRVCH
Sbjct 121 AFDVPGITVDTHFGRLVRRWKWTAEEDPVKVEHAIGELIPRKEWTMLSHYVIFHGRRVCH 180
Query 200 ARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
AR+PACG C+LA DCPS+G GPT+ L+AA LV+G E HLLALAG+
Sbjct 181 ARKPACGACLLAADCPSYGDGPTDHLVAAKLVRGHEAPHLLALAGI 226
>gi|302530869|ref|ZP_07283211.1| endonuclease III [Streptomyces sp. AA4]
gi|302439764|gb|EFL11580.1| endonuclease III [Streptomyces sp. AA4]
Length=253
Score = 347 bits (891), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 168/224 (75%), Positives = 184/224 (83%), Gaps = 0/224 (0%)
Query 20 MNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQAD 79
M R L + +P ELDFT PLEL VA +LSAQ+TD RVNL TPALFARYRTA DYA AD
Sbjct 27 MKRCLDEVYPDAKAELDFTNPLELLVAVVLSAQTTDVRVNLVTPALFARYRTAADYAGAD 86
Query 80 RTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGN 139
R ELE +R TGF+R KA SL+GLG ALVER+GGEVP +D LVTLPGVGRKTANV+LGN
Sbjct 87 RAELEEYLRTTGFFRAKANSLMGLGAALVERYGGEVPKKLDDLVTLPGVGRKTANVVLGN 146
Query 140 AFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCH 199
AF +PGITVDTHFGRLVRRW WT EDPVKVE AVGELI RKEWT+LSHRVIFHGRRVCH
Sbjct 147 AFDVPGITVDTHFGRLVRRWGWTAEEDPVKVEHAVGELIPRKEWTMLSHRVIFHGRRVCH 206
Query 200 ARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALA 243
AR+PACG C L KDCPSFG GPTE +AA LV+GPE DH+L LA
Sbjct 207 ARKPACGACPLRKDCPSFGAGPTEFEVAAKLVKGPEKDHILELA 250
>gi|257057561|ref|YP_003135393.1| DNA-(apurinic or apyrimidinic site) lyase /endonuclease III [Saccharomonospora
viridis DSM 43017]
gi|256587433|gb|ACU98566.1| DNA-(apurinic or apyrimidinic site) lyase /endonuclease III [Saccharomonospora
viridis DSM 43017]
Length=256
Score = 345 bits (886), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 172/238 (73%), Positives = 200/238 (85%), Gaps = 0/238 (0%)
Query 5 WSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPA 64
++ ++RL+LVRRARRM R L A+P+ +CEL+F+TPLEL VA ILSAQ TD+RVN TPA
Sbjct 15 FAEQSRLSLVRRARRMKRCLDVAYPNAHCELNFSTPLELLVAVILSAQCTDERVNQVTPA 74
Query 65 LFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVT 124
LFARY +A DYA ADR ELE LIRP GF+RNKA+SLI LG ALVER GGEVP T+++LV
Sbjct 75 LFARYPSAADYAAADRAELEELIRPAGFFRNKASSLIRLGAALVERHGGEVPGTLEELVR 134
Query 125 LPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWT 184
LPGVGRKTANV+LG AFG+PGITVDTHF RL RRW WT ++DPVK+E VGEL RKEWT
Sbjct 135 LPGVGRKTANVVLGEAFGVPGITVDTHFSRLTRRWLWTDSDDPVKIEHEVGELFPRKEWT 194
Query 185 LLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLAL 242
+LSHRVIFHGRR+CHAR+PACG C LAKDCPS+G+GPTE LAA LV+GPE DHLL L
Sbjct 195 MLSHRVIFHGRRICHARKPACGACPLAKDCPSYGIGPTEFDLAAKLVKGPERDHLLEL 252
>gi|256374410|ref|YP_003098070.1| endonuclease III [Actinosynnema mirum DSM 43827]
gi|255918713|gb|ACU34224.1| endonuclease III [Actinosynnema mirum DSM 43827]
Length=257
Score = 345 bits (886), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 173/236 (74%), Positives = 194/236 (83%), Gaps = 0/236 (0%)
Query 8 ETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFA 67
ETRL LVRRARR R L +P +CELDFTTPLEL VA +LSAQ TDKRVN TPALFA
Sbjct 12 ETRLGLVRRARRTVRVLGVGYPDAHCELDFTTPLELLVAVVLSAQCTDKRVNQVTPALFA 71
Query 68 RYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPG 127
RYR+A +YA ADRTELE L+RPTGFYRNKAA++ GL +VER GEVP T +LV LPG
Sbjct 72 RYRSAEEYAAADRTELEELVRPTGFYRNKAAAISGLAAEIVERHDGEVPGTQAELVKLPG 131
Query 128 VGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLS 187
VGRKTANV+LG+AFG+PGITVDTHFGRLVRRW WTT EDPVKVE AVG L+ERK+WTLLS
Sbjct 132 VGRKTANVVLGDAFGVPGITVDTHFGRLVRRWGWTTEEDPVKVEHAVGALVERKDWTLLS 191
Query 188 HRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALA 243
HR IFHGRRVCHAR PACG C+LA CPSFG GPT+P+ AA LV+G E +HL+ LA
Sbjct 192 HRTIFHGRRVCHARTPACGACLLAPQCPSFGTGPTDPVRAAKLVKGDEAEHLIGLA 247
>gi|300790634|ref|YP_003770925.1| endonuclease III [Amycolatopsis mediterranei U32]
gi|299800148|gb|ADJ50523.1| endonuclease III [Amycolatopsis mediterranei U32]
gi|340532323|gb|AEK47528.1| endonuclease III [Amycolatopsis mediterranei S699]
Length=227
Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 164/224 (74%), Positives = 184/224 (83%), Gaps = 0/224 (0%)
Query 20 MNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQAD 79
M R L +P +CELDFTTPLEL VA +LSAQ+TD RVNL TPALF RYRTA DYA AD
Sbjct 1 MKRCLDDVYPDAHCELDFTTPLELLVAVVLSAQTTDVRVNLVTPALFKRYRTAADYAGAD 60
Query 80 RTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGN 139
R ELE +R TGFYR KA S++GLG ALVERF GEVPA ++ LVTLPGVGRKTANV+LGN
Sbjct 61 RAELEEYLRSTGFYRAKANSVMGLGAALVERFDGEVPAKLEDLVTLPGVGRKTANVVLGN 120
Query 140 AFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCH 199
AF +PGITVDTHFGRLVRRW WT EDPVKVE A+GELI RKEWT+LSHRVIFHGRRVCH
Sbjct 121 AFDVPGITVDTHFGRLVRRWGWTAEEDPVKVEHAIGELIPRKEWTMLSHRVIFHGRRVCH 180
Query 200 ARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALA 243
A++PACG C LA+DCPS+G GPT AA LV+G E DH+LA+A
Sbjct 181 AKKPACGACPLARDCPSYGTGPTGFDEAAKLVKGVEKDHILAMA 224
>gi|260579410|ref|ZP_05847292.1| endonuclease III [Corynebacterium jeikeium ATCC 43734]
gi|258602539|gb|EEW15834.1| endonuclease III [Corynebacterium jeikeium ATCC 43734]
Length=271
Score = 338 bits (867), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 157/239 (66%), Positives = 194/239 (82%), Gaps = 1/239 (0%)
Query 8 ETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFA 67
ET L RRAR++NR LA+A+P +CELDF+ PLEL VAT+LSAQ TDKRVN TPALF
Sbjct 26 ETPLGRKRRARKINRMLAEAYPDAHCELDFSNPLELLVATVLSAQCTDKRVNAVTPALFR 85
Query 68 RYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPG 127
RY TA DYA+A+ ++E LI+ TGFYR+KA S++GLGQA+VER GGEVP T+++LV LPG
Sbjct 86 RYPTAADYAEANIEDVEQLIKSTGFYRSKAKSIVGLGQAIVERHGGEVPGTLEQLVKLPG 145
Query 128 VGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLS 187
VGRKTANV+LGNAFG+PGITVDTH GRL RRW+ T EDPV+VE+ + ELIERKEWTL S
Sbjct 146 VGRKTANVVLGNAFGVPGITVDTHLGRLARRWKLTEHEDPVQVERDLMELIERKEWTLYS 205
Query 188 HRVIFHGRRVCHARRPACGVCVLAKDCPSFGL-GPTEPLLAAPLVQGPETDHLLALAGL 245
HR IFHGRR+CH+RR ACG C LA+ CPSFG+ GP +P +A+ +++ + DHLL +AG
Sbjct 206 HRAIFHGRRICHSRRAACGACFLARQCPSFGMAGPADPEVASTMIKSDDRDHLLDMAGF 264
>gi|238061480|ref|ZP_04606189.1| endonuclease III [Micromonospora sp. ATCC 39149]
gi|237883291|gb|EEP72119.1| endonuclease III [Micromonospora sp. ATCC 39149]
Length=262
Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 159/240 (67%), Positives = 185/240 (78%), Gaps = 0/240 (0%)
Query 6 SAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPAL 65
+AET L RRAR+++R L Q P +CELD PLELAVATILSAQ TDK+VN TP L
Sbjct 8 AAETDLGRTRRARKIHRVLTQTHPDAHCELDHANPLELAVATILSAQCTDKKVNEVTPKL 67
Query 66 FARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTL 125
F RY TA DYA ADR E+E LIRPTGFYRNK SLI LGQALVER+ G+VP +D LVTL
Sbjct 68 FGRYPTAADYAGADRAEMEELIRPTGFYRNKTTSLIRLGQALVERYDGQVPGKLDALVTL 127
Query 126 PGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTL 185
PG+GRKTANVILGNAFG+PGITVDTHF RLV RWR T DPVK+E A+G + +++WT+
Sbjct 128 PGMGRKTANVILGNAFGVPGITVDTHFQRLVHRWRLTAETDPVKIEHAIGAMYPKRDWTM 187
Query 186 LSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL 245
LSHR+IFHGRRVCHA++P CG C LAK CPS+G GPTEP AA L++GP L AG+
Sbjct 188 LSHRIIFHGRRVCHAKKPGCGACTLAKLCPSYGTGPTEPAAAAKLLKGPRARDLAVAAGV 247
>gi|68537066|ref|YP_251771.1| endonuclease III [Corynebacterium jeikeium K411]
gi|68264665|emb|CAI38153.1| endonuclease III [Corynebacterium jeikeium K411]
Length=271
Score = 334 bits (856), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 156/239 (66%), Positives = 192/239 (81%), Gaps = 1/239 (0%)
Query 8 ETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFA 67
ET L RRAR++NR LA+A+P +CELDF PLEL VAT+LSAQ TDKRVN TPALF
Sbjct 26 ETPLGRKRRARKINRMLAEAYPDAHCELDFNNPLELLVATVLSAQCTDKRVNAVTPALFR 85
Query 68 RYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPG 127
Y TA DYA+A+ ++E LI+ TGFYR+KA S++GLGQA+VER GGEVP T+++LV LPG
Sbjct 86 CYPTAADYAEANIEDVEQLIKSTGFYRSKAKSIVGLGQAIVERHGGEVPGTLEQLVKLPG 145
Query 128 VGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLS 187
VGRKTANV+LGNAFG+PGITVDTH GRL RRW+ T EDPV+VE+ + ELIERKEWTL S
Sbjct 146 VGRKTANVVLGNAFGVPGITVDTHLGRLARRWKLTEHEDPVQVERDLMELIERKEWTLYS 205
Query 188 HRVIFHGRRVCHARRPACGVCVLAKDCPSFGL-GPTEPLLAAPLVQGPETDHLLALAGL 245
HR IFHGRR+CH+RR ACG C LA+ CPSFG+ GP +P +A+ +++ + DHLL +AG
Sbjct 206 HRAIFHGRRICHSRRAACGACFLARQCPSFGMAGPADPEVASTMIKSDDRDHLLDMAGF 264
>gi|296393534|ref|YP_003658418.1| endonuclease III [Segniliparus rotundus DSM 44985]
gi|296180681|gb|ADG97587.1| endonuclease III [Segniliparus rotundus DSM 44985]
Length=245
Score = 330 bits (847), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 159/231 (69%), Positives = 187/231 (81%), Gaps = 0/231 (0%)
Query 11 LALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYR 70
L LVRRARRM+R LA+ FP +CEL FT PLEL VAT+LSAQ+TD RVN+ TPALFARYR
Sbjct 15 LGLVRRARRMSRTLAELFPDAHCELRFTNPLELLVATVLSAQTTDVRVNMVTPALFARYR 74
Query 71 TARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGR 130
TA+DYAQA++ ++E LIR G +R KAA+LIG+G AL ERFG +VP T+ +LVTLPGVGR
Sbjct 75 TAQDYAQANQADVEELIRTIGLFRAKAANLIGIGSALCERFGAQVPRTLQELVTLPGVGR 134
Query 131 KTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRV 190
KTANV+LGNAFG+PG+TVDTHF RLV RWRWT DPVK+E AV LIERKEWT LSHR+
Sbjct 135 KTANVVLGNAFGVPGLTVDTHFARLVGRWRWTEETDPVKIEFAVAALIERKEWTDLSHRI 194
Query 191 IFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLA 241
I+ GR VCHA+RPACG C LA DCPSFG+GPTE LA LV+ + LL+
Sbjct 195 IWFGRSVCHAQRPACGACSLAADCPSFGVGPTERALAQRLVKTSYSTALLS 245
>gi|317506667|ref|ZP_07964457.1| endonuclease III [Segniliparus rugosus ATCC BAA-974]
gi|316255050|gb|EFV14330.1| endonuclease III [Segniliparus rugosus ATCC BAA-974]
Length=236
Score = 330 bits (845), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/222 (71%), Positives = 187/222 (85%), Gaps = 0/222 (0%)
Query 11 LALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYR 70
L LVRRARRM+R LA FP +CELDF +PLEL VAT+LSAQ+TD RVN+ TPALFARYR
Sbjct 13 LGLVRRARRMSRELAVLFPDAHCELDFKSPLELLVATVLSAQTTDVRVNMVTPALFARYR 72
Query 71 TARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGR 130
TA+DYA+A + ++E LIR G +R KAA+LIG+G AL +RFGGEVP T+ +LVTLPGVGR
Sbjct 73 TAKDYAEAKQADVEELIRTIGLFRAKAANLIGIGAALCDRFGGEVPGTLRELVTLPGVGR 132
Query 131 KTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVKVEQAVGELIERKEWTLLSHRV 190
KTANV+LGNAFG+PG+TVDTHFGRLV RW+WT DPVK+E AVG LIERK+WT LSHRV
Sbjct 133 KTANVVLGNAFGVPGLTVDTHFGRLVGRWKWTEETDPVKIEFAVGALIERKDWTALSHRV 192
Query 191 IFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQ 232
I+ GR VCH++RPACG C LA+DCPS+G+GPTE +LA LV+
Sbjct 193 IWFGRSVCHSQRPACGACPLARDCPSYGIGPTERVLAERLVK 234
Lambda K H
0.323 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 343201993260
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40