BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3675 Length=125 Score E Sequences producing significant alignments: (Bits) Value gi|15610811|ref|NP_218192.1| hypothetical protein Rv3675 [Mycoba... 253 6e-66 gi|308372702|ref|ZP_07429573.2| membrane protein [Mycobacterium ... 242 1e-62 gi|308371411|ref|ZP_07424907.2| membrane protein [Mycobacterium ... 232 1e-59 gi|41406497|ref|NP_959333.1| hypothetical protein MAP0399c [Myco... 114 7e-24 gi|183985133|ref|YP_001853424.1| hypothetical protein MMAR_5163 ... 106 1e-21 gi|118465953|ref|YP_879736.1| hypothetical protein MAV_0454 [Myc... 105 3e-21 gi|296166732|ref|ZP_06849156.1| conserved hypothetical protein [... 104 5e-21 gi|342861988|ref|ZP_08718632.1| hypothetical protein MCOL_23975 ... 103 6e-21 gi|240172236|ref|ZP_04750895.1| hypothetical protein MkanA1_2317... 102 2e-20 gi|118619416|ref|YP_907748.1| hypothetical protein MUL_4249 [Myc... 95.5 2e-18 gi|254820837|ref|ZP_05225838.1| hypothetical protein MintA_12963... 95.5 2e-18 gi|120406381|ref|YP_956210.1| hypothetical protein Mvan_5434 [My... 79.3 2e-13 gi|169627521|ref|YP_001701170.1| hypothetical protein MAB_0417c ... 67.8 6e-10 gi|108801780|ref|YP_641977.1| hypothetical protein Mmcs_4817 [My... 65.1 3e-09 gi|145221964|ref|YP_001132642.1| hypothetical protein Mflv_1372 ... 52.8 2e-05 gi|262200521|ref|YP_003271729.1| hypothetical protein Gbro_0506 ... 51.2 5e-05 gi|111021298|ref|YP_704270.1| hypothetical protein RHA1_ro04322 ... 50.8 7e-05 gi|226363642|ref|YP_002781424.1| hypothetical protein ROP_42320 ... 50.8 7e-05 gi|326383487|ref|ZP_08205174.1| hypothetical protein SCNU_11141 ... 47.4 7e-04 gi|325675284|ref|ZP_08154969.1| hypothetical protein HMPREF0724_... 45.1 0.003 gi|118468203|ref|YP_890408.1| hypothetical protein MSMEG_6188 [M... 44.3 0.006 gi|257057562|ref|YP_003135394.1| hypothetical protein Svir_36120... 41.6 0.043 gi|296393533|ref|YP_003658417.1| hypothetical protein Srot_1113 ... 40.4 0.082 gi|317506666|ref|ZP_07964456.1| hypothetical protein HMPREF9336_... 38.9 0.29 gi|328850280|gb|EGF99446.1| hypothetical protein MELLADRAFT_1182... 37.7 0.63 gi|325001415|ref|ZP_08122527.1| hypothetical protein PseP1_21756... 37.4 0.70 gi|331700211|ref|YP_004336450.1| hypothetical protein Psed_6508 ... 36.2 1.5 gi|339000129|ref|ZP_08638751.1| bifunctional proline dehydrogena... 36.2 1.8 gi|302530870|ref|ZP_07283212.1| predicted protein [Streptomyces ... 36.2 1.8 gi|300790635|ref|YP_003770926.1| hypothetical protein AMED_8831 ... 35.4 2.9 gi|333992593|ref|YP_004525207.1| hypothetical protein JDM601_395... 35.4 3.1 gi|258650966|ref|YP_003200122.1| hypothetical protein Namu_0719 ... 35.0 3.6 gi|256374409|ref|YP_003098069.1| hypothetical protein Amir_0254 ... 34.7 4.5 gi|238588254|ref|XP_002391675.1| hypothetical protein MPER_08859... 34.3 6.4 >gi|15610811|ref|NP_218192.1| hypothetical protein Rv3675 [Mycobacterium tuberculosis H37Rv] gi|15843292|ref|NP_338329.1| hypothetical protein MT3776 [Mycobacterium tuberculosis CDC1551] gi|31794845|ref|NP_857338.1| hypothetical protein Mb3699 [Mycobacterium bovis AF2122/97] 61 more sequence titles Length=125 Score = 253 bits (646), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 125/125 (100%), Positives = 125/125 (100%), Gaps = 0/125 (0%) Query 1 MFTLLVSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARN 60 MFTLLVSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARN Sbjct 1 MFTLLVSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARN 60 Query 61 GMPEALDYLHRRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEPPRHGQPNPQFRTAR 120 GMPEALDYLHRRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEPPRHGQPNPQFRTAR Sbjct 61 GMPEALDYLHRRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEPPRHGQPNPQFRTAR 120 Query 121 HANHV 125 HANHV Sbjct 121 HANHV 125 >gi|308372702|ref|ZP_07429573.2| membrane protein [Mycobacterium tuberculosis SUMu005] gi|308340160|gb|EFP29011.1| membrane protein [Mycobacterium tuberculosis SUMu005] Length=120 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 119/120 (99%), Positives = 120/120 (100%), Gaps = 0/120 (0%) Query 6 VSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEA 65 +SWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEA Sbjct 1 MSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEA 60 Query 66 LDYLHRRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEPPRHGQPNPQFRTARHANHV 125 LDYLHRRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEPPRHGQPNPQFRTARHANHV Sbjct 61 LDYLHRRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEPPRHGQPNPQFRTARHANHV 120 >gi|308371411|ref|ZP_07424907.2| membrane protein [Mycobacterium tuberculosis SUMu003] gi|308372614|ref|ZP_07429272.2| membrane protein [Mycobacterium tuberculosis SUMu004] gi|308373778|ref|ZP_07433638.2| membrane protein [Mycobacterium tuberculosis SUMu006] 14 more sequence titles Length=115 Score = 232 bits (591), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 114/115 (99%), Positives = 115/115 (100%), Gaps = 0/115 (0%) Query 11 VACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEALDYLH 70 +ACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEALDYLH Sbjct 1 MACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEALDYLH 60 Query 71 RRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEPPRHGQPNPQFRTARHANHV 125 RRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEPPRHGQPNPQFRTARHANHV Sbjct 61 RRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEPPRHGQPNPQFRTARHANHV 115 >gi|41406497|ref|NP_959333.1| hypothetical protein MAP0399c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394846|gb|AAS02716.1| hypothetical protein MAP_0399c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336460825|gb|EGO39710.1| hypothetical protein MAPs_36460 [Mycobacterium avium subsp. paratuberculosis S397] Length=131 Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 75/131 (58%), Positives = 83/131 (64%), Gaps = 6/131 (4%) Query 1 MFTLLVSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARN 60 MFTL VSWLLVA VP LLMLA LGLGRLE+ L RD DV EFLE+ VD+HTLA Sbjct 1 MFTLRVSWLLVAGVPVLLMLAALGLGRLEKELVRDPAAVADVDEFLERTGGVDMHTLAAE 60 Query 61 GMPEALDYLHRRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVE---PPR---HGQPNP 114 GMPEAL+YLHRR+A++ P G GPR+A P F P E P R H NP Sbjct 61 GMPEALEYLHRREAQQSAGPAPGGRSGGPRHAAPSFAAGFVDPDEMTLPTRIGGHSHVNP 120 Query 115 QFRTARHANHV 125 QFR RHAN V Sbjct 121 QFRAPRHANRV 131 >gi|183985133|ref|YP_001853424.1| hypothetical protein MMAR_5163 [Mycobacterium marinum M] gi|183178459|gb|ACC43569.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=122 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/127 (56%), Positives = 85/127 (67%), Gaps = 7/127 (5%) Query 1 MFTLLVSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARN 60 MFTLLVSWLLVA +P LL+L TLGLGRLE L+ DTV+A+DVAEFL+ A AVDV TLAR Sbjct 1 MFTLLVSWLLVAGIPALLILTTLGLGRLEVALSDDTVSASDVAEFLDHARAVDVRTLARE 60 Query 61 GMPEALDYLHRRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEPPRHGQ--PNPQFRT 118 GMPEAL+YLHRRQA ++D+ + G +A P + H Q NPQF + Sbjct 61 GMPEALEYLHRRQALALSDASAPRALTGKHHAVPGVEGAFNH-----LHAQLRTNPQFTS 115 Query 119 ARHANHV 125 RH N V Sbjct 116 TRHVNRV 122 >gi|118465953|ref|YP_879736.1| hypothetical protein MAV_0454 [Mycobacterium avium 104] gi|254773459|ref|ZP_05214975.1| hypothetical protein MaviaA2_02106 [Mycobacterium avium subsp. avium ATCC 25291] gi|118167240|gb|ABK68137.1| conserved hypothetical protein [Mycobacterium avium 104] Length=126 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/126 (56%), Positives = 79/126 (63%), Gaps = 6/126 (4%) Query 6 VSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEA 65 +SWLLVA VP LLMLA LGLGRLE+ L RD DV EFLE+ VD+HTLA GMPEA Sbjct 1 MSWLLVAGVPVLLMLAALGLGRLEKELVRDPAAVADVDEFLERTGGVDMHTLAAEGMPEA 60 Query 66 LDYLHRRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVE---PPR---HGQPNPQFRTA 119 L+YLHRR+A++ P G GPR+A P F P E P R H NPQFR Sbjct 61 LEYLHRREAQQSAGPAPGGRSGGPRHAAPSFAAGFVDPDEMTLPTRIGGHSHVNPQFRAP 120 Query 120 RHANHV 125 RHAN V Sbjct 121 RHANRV 126 >gi|296166732|ref|ZP_06849156.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897902|gb|EFG77484.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=131 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/131 (58%), Positives = 85/131 (65%), Gaps = 6/131 (4%) Query 1 MFTLLVSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARN 60 MFTLLVSWLLVACVPGLLMLA LGLGRLER LAR+ V V E E E VD+ TLAR Sbjct 1 MFTLLVSWLLVACVPGLLMLAALGLGRLERGLAREDVAMIAVTELFETVELVDMRTLARE 60 Query 61 GMPEALDYLHRRQARRITDSPPLGSGAGPRYAGPLFVT------DLDSPVEPPRHGQPNP 114 GMPEAL+YLHRR+AR + ++ G AGPR+A P F +L P H + NP Sbjct 61 GMPEALEYLHRREARELAEAALAGLTAGPRHAAPSFAASFVDHGELTLPTRIQPHSRINP 120 Query 115 QFRTARHANHV 125 QF RH N V Sbjct 121 QFEAPRHVNRV 131 >gi|342861988|ref|ZP_08718632.1| hypothetical protein MCOL_23975 [Mycobacterium colombiense CECT 3035] gi|342130528|gb|EGT83837.1| hypothetical protein MCOL_23975 [Mycobacterium colombiense CECT 3035] Length=126 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 68/126 (54%), Positives = 81/126 (65%), Gaps = 6/126 (4%) Query 6 VSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEA 65 +SWLLVA +P LLMLA LGLGRLE LA + DV EFLE+A VD+HTLA GMPEA Sbjct 1 MSWLLVAGIPALLMLAALGLGRLESELAPRALVVADVDEFLERAGGVDMHTLASEGMPEA 60 Query 66 LDYLHRRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVE---PPR---HGQPNPQFRTA 119 L+YLHRR+ +++++P G GPR+A P F D E P R H NPQFR Sbjct 61 LEYLHRRELAQLSEAPASGRTGGPRHAAPSFAVSFDDRDEMTLPTRIHGHSHVNPQFRAP 120 Query 120 RHANHV 125 RHAN V Sbjct 121 RHANRV 126 >gi|240172236|ref|ZP_04750895.1| hypothetical protein MkanA1_23174 [Mycobacterium kansasii ATCC 12478] Length=110 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/120 (56%), Positives = 82/120 (69%), Gaps = 10/120 (8%) Query 6 VSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEA 65 +SWLLVACVP LLML TLGLGRLE+ L+ DTVTA+DVAEFLEQA+A DVH LAR+GMPEA Sbjct 1 MSWLLVACVPALLMLTTLGLGRLEQTLSCDTVTASDVAEFLEQAQAADVHRLARDGMPEA 60 Query 66 LDYLHRRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEPPRHGQPNPQFRTARHANHV 125 L YLHRR+A +T++P + G +A P PRH + + + RH N V Sbjct 61 LAYLHRREAPALTEAPATRALTGKYHADPYRAA--------PRH--IHSRVKATRHINRV 110 >gi|118619416|ref|YP_907748.1| hypothetical protein MUL_4249 [Mycobacterium ulcerans Agy99] gi|118571526|gb|ABL06277.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=117 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/122 (54%), Positives = 80/122 (66%), Gaps = 7/122 (5%) Query 6 VSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEA 65 +SWLLVA +P LL+L TLGLGRLE L+ DTV+A+DVAEFL+ A AVDV TLAR GMPEA Sbjct 1 MSWLLVAGIPALLILTTLGLGRLEVALSDDTVSASDVAEFLDHARAVDVRTLAREGMPEA 60 Query 66 LDYLHRRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEPPRHGQ--PNPQFRTARHAN 123 L+YLHRRQA ++D+ + G +A P + H Q NPQF + RH N Sbjct 61 LEYLHRRQALALSDASAPRALTGKHHAVPGVEGTFNHL-----HAQLRTNPQFTSTRHVN 115 Query 124 HV 125 V Sbjct 116 RV 117 >gi|254820837|ref|ZP_05225838.1| hypothetical protein MintA_12963 [Mycobacterium intracellulare ATCC 13950] Length=126 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/126 (54%), Positives = 77/126 (62%), Gaps = 6/126 (4%) Query 6 VSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEA 65 +SWLLVA VP LLMLA LGLGRLE L R + DV EFLE+A VD+ TLA GMPEA Sbjct 1 MSWLLVAGVPVLLMLAALGLGRLESELTRAPLAVADVDEFLERAGGVDMRTLAAEGMPEA 60 Query 66 LDYLHRRQARRITDSPPLGSGAGPRYAGPLFV---TDLDSPVEPPR---HGQPNPQFRTA 119 L+YLHRR+AR++ GPR+A P F D D P R H NPQFR Sbjct 61 LEYLHRREARQLPGPALTARNDGPRHAAPSFAVGFVDRDEMTLPTRIHGHSHVNPQFRAP 120 Query 120 RHANHV 125 RHAN V Sbjct 121 RHANRV 126 >gi|120406381|ref|YP_956210.1| hypothetical protein Mvan_5434 [Mycobacterium vanbaalenii PYR-1] gi|119959199|gb|ABM16204.1| putative membrane protein [Mycobacterium vanbaalenii PYR-1] Length=110 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/123 (45%), Positives = 67/123 (55%), Gaps = 16/123 (13%) Query 6 VSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEA 65 +SWLLVA +PGLLMLAT GL R+E L RDTVT +DV EFLEQA A T AR+G A Sbjct 1 MSWLLVALIPGLLMLATFGLERVESGLGRDTVTPSDVDEFLEQARAGGAPTPARDGSDRA 60 Query 66 LDYLHRRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEPPR---HGQPNPQFRTARHA 122 + RR +R D+P VT + + P R H N +FR RHA Sbjct 61 PHAVDRRPGKR--DAPHAS-----------LVTTITAQGLPTREYLHQLSNTEFRQTRHA 107 Query 123 NHV 125 + V Sbjct 108 DRV 110 >gi|169627521|ref|YP_001701170.1| hypothetical protein MAB_0417c [Mycobacterium abscessus ATCC 19977] gi|169239488|emb|CAM60516.1| Conserved hypothetical membrane protein [Mycobacterium abscessus] Length=120 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/59 (56%), Positives = 46/59 (78%), Gaps = 0/59 (0%) Query 19 MLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEALDYLHRRQARRI 77 MLA+LGLG+LE L R T+ ++VA+FL+QA D++ LAR+GMP A++ LHRRQ +RI Sbjct 1 MLASLGLGKLEAGLMRHTLQPSEVADFLDQASPSDMNRLARDGMPSAIEGLHRRQLQRI 59 >gi|108801780|ref|YP_641977.1| hypothetical protein Mmcs_4817 [Mycobacterium sp. MCS] gi|119870931|ref|YP_940883.1| hypothetical protein Mkms_4903 [Mycobacterium sp. KMS] gi|126437768|ref|YP_001073459.1| hypothetical protein Mjls_5204 [Mycobacterium sp. JLS] gi|108772199|gb|ABG10921.1| putative membrane protein [Mycobacterium sp. MCS] gi|119697020|gb|ABL94093.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126237568|gb|ABO00969.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=94 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/120 (39%), Positives = 59/120 (50%), Gaps = 26/120 (21%) Query 6 VSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEA 65 +SWL V +P LLM+AT GL RLE LAR+TV+A+DV +FL +AEA Sbjct 1 MSWLFVGFIPWLLMVATFGLERLESGLARNTVSASDVDDFLLRAEA-------------- 46 Query 66 LDYLHRRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEPPRHGQPNPQFRTARHANHV 125 + HR+Q R P P T + P +PNPQF+ RHAN V Sbjct 47 -EREHRQQTR-----------LEPVETLPTRTTGAEVPARVYIPHRPNPQFQPTRHANRV 94 >gi|145221964|ref|YP_001132642.1| hypothetical protein Mflv_1372 [Mycobacterium gilvum PYR-GCK] gi|315446297|ref|YP_004079176.1| hypothetical protein Mspyr1_48010 [Mycobacterium sp. Spyr1] gi|145214450|gb|ABP43854.1| putative membrane protein [Mycobacterium gilvum PYR-GCK] gi|315264600|gb|ADU01342.1| hypothetical protein Mspyr1_48010 [Mycobacterium sp. Spyr1] Length=103 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/123 (35%), Positives = 53/123 (44%), Gaps = 23/123 (18%) Query 6 VSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEA 65 +SWL VA VPGLLM+AT GL R+E L RD + DV L+ Sbjct 1 MSWLFVALVPGLLMMATFGLERVEAGLRRDAFSPADVGRLLDAEVG-------------- 46 Query 66 LDYLHRRQARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEP-PRHGQ--PNPQFRTARHA 122 R RRI P A R V + +P P P++ Q N +FR RHA Sbjct 47 ------RGERRIRSHPQALPTANGRRGNGRIVEPVPTPDLPTPQYLQHLANTEFRQTRHA 100 Query 123 NHV 125 N V Sbjct 101 NRV 103 >gi|262200521|ref|YP_003271729.1| hypothetical protein Gbro_0506 [Gordonia bronchialis DSM 43247] gi|262083868|gb|ACY19836.1| hypothetical protein Gbro_0506 [Gordonia bronchialis DSM 43247] Length=110 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/62 (46%), Positives = 39/62 (63%), Gaps = 0/62 (0%) Query 15 PGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEALDYLHRRQA 74 P +LML + + +++ L R TV+ V +FLE A+A +V TLAR GMP ALD L R+ Sbjct 23 PAVLMLFAMAMDKVQARLDRLTVSREHVEDFLESADAENVDTLAREGMPAALDELRSRRV 82 Query 75 RR 76 R Sbjct 83 TR 84 >gi|111021298|ref|YP_704270.1| hypothetical protein RHA1_ro04322 [Rhodococcus jostii RHA1] gi|110820828|gb|ABG96112.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=90 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/68 (48%), Positives = 38/68 (56%), Gaps = 0/68 (0%) Query 9 LLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEALDY 68 L V P LLML L + R+E L R TV +V EFL+QA +V TLA G P AL Sbjct 4 LAVVLFPVLLMLFALAMERVEFRLRRLTVRQQEVEEFLDQASHDEVATLAHEGFPHALAR 63 Query 69 LHRRQARR 76 HRR+ R Sbjct 64 FHRRRKGR 71 >gi|226363642|ref|YP_002781424.1| hypothetical protein ROP_42320 [Rhodococcus opacus B4] gi|226242131|dbj|BAH52479.1| hypothetical protein [Rhodococcus opacus B4] Length=90 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/68 (48%), Positives = 38/68 (56%), Gaps = 0/68 (0%) Query 9 LLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEALDY 68 L V P LLML L + R+E L R TV +V EFL+QA +V TLA G P AL Sbjct 4 LAVVLFPVLLMLFALAMERVEFRLRRLTVRQQEVEEFLDQASHDEVATLAHEGFPHALAR 63 Query 69 LHRRQARR 76 HRR+ R Sbjct 64 FHRRRKGR 71 >gi|326383487|ref|ZP_08205174.1| hypothetical protein SCNU_11141 [Gordonia neofelifaecis NRRL B-59395] gi|326197893|gb|EGD55080.1| hypothetical protein SCNU_11141 [Gordonia neofelifaecis NRRL B-59395] Length=84 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/71 (41%), Positives = 41/71 (58%), Gaps = 5/71 (7%) Query 15 PGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEALDYLHRRQA 74 P +LML L + +++ L R +V V EFLE A+ V LA++G+P ALD L R+ Sbjct 10 PAVLMLFALAMEKVQDSLDRLSVGPAHVEEFLESADDAAVSNLAKDGLPAALDELRSRR- 68 Query 75 RRITDSPPLGS 85 +SPPL S Sbjct 69 ----NSPPLES 75 >gi|325675284|ref|ZP_08154969.1| hypothetical protein HMPREF0724_12751 [Rhodococcus equi ATCC 33707] gi|325553990|gb|EGD23667.1| hypothetical protein HMPREF0724_12751 [Rhodococcus equi ATCC 33707] Length=84 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/58 (49%), Positives = 33/58 (57%), Gaps = 0/58 (0%) Query 9 LLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEAL 66 L V P LLML L + R+E L R TV +V EFL+QA +V TLA G P AL Sbjct 4 LAVVLFPVLLMLFALAMERVEFRLRRLTVREQEVEEFLDQASQSEVATLASEGFPHAL 61 >gi|118468203|ref|YP_890408.1| hypothetical protein MSMEG_6188 [Mycobacterium smegmatis str. MC2 155] gi|118169490|gb|ABK70386.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=97 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/30 (74%), Positives = 24/30 (80%), Gaps = 0/30 (0%) Query 6 VSWLLVACVPGLLMLATLGLGRLERFLARD 35 +SWLLVA PGLLMLAT GL RLE LAR+ Sbjct 1 MSWLLVALTPGLLMLATFGLDRLEAGLARE 30 >gi|257057562|ref|YP_003135394.1| hypothetical protein Svir_36120 [Saccharomonospora viridis DSM 43017] gi|256587434|gb|ACU98567.1| hypothetical protein Svir_36120 [Saccharomonospora viridis DSM 43017] Length=83 Score = 41.6 bits (96), Expect = 0.043, Method: Compositional matrix adjust. Identities = 25/69 (37%), Positives = 39/69 (57%), Gaps = 1/69 (1%) Query 5 LVSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPE 64 + W ++A VP ++ML LG+ ++E L +V DV EFLEQA +V L +G+ Sbjct 1 MTVWFVIA-VPVVVMLFALGMEKVEHRLRHVSVRGEDVEEFLEQARPDEVKALYGHGIGR 59 Query 65 ALDYLHRRQ 73 AL+ R+ Sbjct 60 ALELFRLRR 68 >gi|296393533|ref|YP_003658417.1| hypothetical protein Srot_1113 [Segniliparus rotundus DSM 44985] gi|296180680|gb|ADG97586.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length=77 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 26/73 (36%), Positives = 36/73 (50%), Gaps = 0/73 (0%) Query 9 LLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEALDY 68 LLV P +LM+ L + RLE L + +V FL A ++TLA G+ EAL+ Sbjct 4 LLVVFTPAVLMVFALAMQRLETHLGKPGPREDEVEAFLLHASPTAMNTLAYEGLSEALEI 63 Query 69 LHRRQARRITDSP 81 RQ R +P Sbjct 64 FDIRQERAKAANP 76 >gi|317506666|ref|ZP_07964456.1| hypothetical protein HMPREF9336_00826 [Segniliparus rugosus ATCC BAA-974] gi|316255049|gb|EFV14329.1| hypothetical protein HMPREF9336_00826 [Segniliparus rugosus ATCC BAA-974] Length=83 Score = 38.9 bits (89), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/70 (36%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Query 9 LLVACVPGLLMLATLGLGRLERFLARDTVT---ATDVAEFLEQAEAVDVHTLARNGMPEA 65 LLV P +LML L + RLE L + + V EFL A + ++ L G+PEA Sbjct 4 LLVVLAPVMLMLFALAMQRLEARLGKSNPSNPREDQVEEFLLNANSEEIGALVEAGLPEA 63 Query 66 LDYLHRRQAR 75 LD R+ + Sbjct 64 LDIFDVRREK 73 >gi|328850280|gb|EGF99446.1| hypothetical protein MELLADRAFT_118281 [Melampsora larici-populina 98AG31] Length=772 Score = 37.7 bits (86), Expect = 0.63, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 35/65 (54%), Gaps = 9/65 (13%) Query 50 EAVDVHTLARNGMPEALDYLHRRQARRITDSPPLGS-------GAGP-RYAGPLFVTDLD 101 E+VD T +R+ P+AL+Y Q + + DSP +G G+GP RYA LD Sbjct 591 ESVDHRTYSRSNAPQALEYRGSHQ-KDVFDSPAVGEELDIHLYGSGPSRYALHHQADYLD 649 Query 102 SPVEP 106 PVEP Sbjct 650 HPVEP 654 >gi|325001415|ref|ZP_08122527.1| hypothetical protein PseP1_21756 [Pseudonocardia sp. P1] Length=82 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 24/63 (39%), Positives = 34/63 (54%), Gaps = 1/63 (1%) Query 5 LVSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPE 64 + +WL V VP L+M LG+ R+E L TV ++ E LEQ +V L R+G Sbjct 1 MTAWLSV-LVPLLVMFFALGMERVESRLRESTVRQDELDEMLEQPRPDEVRALFRSGTSR 59 Query 65 ALD 67 AL+ Sbjct 60 ALE 62 >gi|331700211|ref|YP_004336450.1| hypothetical protein Psed_6508 [Pseudonocardia dioxanivorans CB1190] gi|326954900|gb|AEA28597.1| hypothetical protein Psed_6508 [Pseudonocardia dioxanivorans CB1190] Length=109 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/71 (33%), Positives = 35/71 (50%), Gaps = 1/71 (1%) Query 5 LVSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPE 64 + +WL V VP L+M LG+ R+E L T+ ++ E LE+ +V + R G Sbjct 26 MTAWLSV-LVPLLVMFFALGMERVESRLRDATMPQDELDEMLERPRPEEVRAMFRQGTAR 84 Query 65 ALDYLHRRQAR 75 AL+ R R Sbjct 85 ALELFRLRNRR 95 >gi|339000129|ref|ZP_08638751.1| bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase [Halomonas sp. TD01] gi|338763004|gb|EGP18014.1| bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase [Halomonas sp. TD01] Length=1221 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Query 68 YLHRRQARRITDSPPLG----SGAGPRYAGPLFVTDLDSPVEPPRHGQPN 113 Y++R Q I S P G SG GP+ GPL+VT RH +P Sbjct 969 YVNRNQIGAIVGSQPFGGEGLSGTGPKAGGPLYVTRFRRTSAAERHEKPE 1018 >gi|302530870|ref|ZP_07283212.1| predicted protein [Streptomyces sp. AA4] gi|302439765|gb|EFL11581.1| predicted protein [Streptomyces sp. AA4] Length=93 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/69 (32%), Positives = 36/69 (53%), Gaps = 1/69 (1%) Query 5 LVSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPE 64 + W ++ VP ++M L + R+E L V +V EFLEQA+ +V L +G+ Sbjct 11 MTVWFVI-LVPLVIMFFALFMERVESRLKHVAVQENEVEEFLEQAQPNEVRALYGHGIGR 69 Query 65 ALDYLHRRQ 73 AL+ R+ Sbjct 70 ALELFRLRR 78 >gi|300790635|ref|YP_003770926.1| hypothetical protein AMED_8831 [Amycolatopsis mediterranei U32] gi|299800149|gb|ADJ50524.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340532324|gb|AEK47529.1| hypothetical protein RAM_45310 [Amycolatopsis mediterranei S699] Length=83 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/58 (37%), Positives = 31/58 (54%), Gaps = 0/58 (0%) Query 10 LVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEALD 67 V VP ++M L + R+E L V +V EFLEQA+ +V L +G+ AL+ Sbjct 5 FVILVPLVIMFFALFMERVESRLKHVAVQENEVEEFLEQAQPNEVRALYGHGIGRALE 62 >gi|333992593|ref|YP_004525207.1| hypothetical protein JDM601_3953 [Mycobacterium sp. JDM601] gi|333488561|gb|AEF37953.1| hypothetical protein JDM601_3953 [Mycobacterium sp. JDM601] Length=46 Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust. Identities = 16/33 (49%), Positives = 22/33 (67%), Gaps = 0/33 (0%) Query 6 VSWLLVACVPGLLMLATLGLGRLERFLARDTVT 38 +SWLL+ +P LLMLA +GL R+E L+ T Sbjct 1 MSWLLITAIPALLMLAAVGLERIETGLSEAEAT 33 >gi|258650966|ref|YP_003200122.1| hypothetical protein Namu_0719 [Nakamurella multipartita DSM 44233] gi|258554191|gb|ACV77133.1| hypothetical protein Namu_0719 [Nakamurella multipartita DSM 44233] Length=88 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/48 (42%), Positives = 28/48 (59%), Gaps = 0/48 (0%) Query 19 MLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEAL 66 M+ L + RLER L TV+ DV EFL+ A+ +V+T R G +A Sbjct 14 MVFALLMERLERRLKTATVSEADVQEFLDTAKPEEVNTFIREGWTKAF 61 >gi|256374409|ref|YP_003098069.1| hypothetical protein Amir_0254 [Actinosynnema mirum DSM 43827] gi|255918712|gb|ACU34223.1| hypothetical protein Amir_0254 [Actinosynnema mirum DSM 43827] Length=82 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 22/69 (32%), Positives = 36/69 (53%), Gaps = 1/69 (1%) Query 5 LVSWLLVACVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPE 64 + +W ++A VP ++M L + R+E L V +V EFLE A +V L +G+ Sbjct 1 MTAWFVIA-VPIVIMFFALFMERVEARLRHVAVQEDEVEEFLESARPDEVKALYGHGIGR 59 Query 65 ALDYLHRRQ 73 AL+ R+ Sbjct 60 ALELFRLRR 68 >gi|238588254|ref|XP_002391675.1| hypothetical protein MPER_08859 [Moniliophthora perniciosa FA553] gi|215456653|gb|EEB92605.1| hypothetical protein MPER_08859 [Moniliophthora perniciosa FA553] Length=169 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 27/94 (29%), Positives = 43/94 (46%), Gaps = 13/94 (13%) Query 13 CVPGLLMLATLGLGRLERFLARDTVTATDVAEFLEQAEAVDVHTLARNGMPEALDYLHRR 72 C P L+ + L + +LE+FLA D ++ E +E+ D+ T AR + ++ Sbjct 59 CRPDLMSMNALNVVKLEQFLAGDK-RLENLKEQVERIRKFDI-TAARRCTVTVVTFV--- 113 Query 73 QARRITDSPPLGSGAGPRYAGPLFVTDLDSPVEP 106 P +G+G G A P VT L P +P Sbjct 114 --------PAVGAGYGANGAWPGVVTTLWDPADP 139 Lambda K H 0.323 0.138 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130354689300 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40