BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3678A
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|15843296|ref|NP_338333.1| hypothetical protein MT3780 [Mycoba... 109 1e-22
gi|240172240|ref|ZP_04750899.1| hypothetical protein MkanA1_2319... 108 2e-22
gi|118619420|ref|YP_907752.1| hypothetical protein MUL_4253 [Myc... 107 4e-22
gi|289441111|ref|ZP_06430855.1| conserved hypothetical protein [... 107 4e-22
gi|118465261|ref|YP_879732.1| hypothetical protein MAV_0450 [Myc... 107 4e-22
gi|108801784|ref|YP_641981.1| hypothetical protein Mmcs_4821 [My... 107 9e-22
gi|296166736|ref|ZP_06849160.1| conserved hypothetical protein [... 106 1e-21
gi|183985137|ref|YP_001853428.1| hypothetical protein MMAR_5167 ... 105 2e-21
gi|118469530|ref|YP_890412.1| hypothetical protein MSMEG_6192 [M... 104 5e-21
gi|254820833|ref|ZP_05225834.1| hypothetical protein MintA_12943... 103 6e-21
gi|342861984|ref|ZP_08718628.1| hypothetical protein MCOL_23955 ... 103 7e-21
gi|326383492|ref|ZP_08205179.1| hypothetical protein SCNU_11166 ... 102 2e-20
gi|169627516|ref|YP_001701165.1| hypothetical protein MAB_0412 [... 102 2e-20
gi|343926466|ref|ZP_08765971.1| hypothetical protein GOALK_060_0... 102 2e-20
gi|262200513|ref|YP_003271721.1| hypothetical protein Gbro_0498 ... 101 3e-20
gi|315446304|ref|YP_004079183.1| hypothetical protein Mspyr1_480... 100 6e-20
gi|226363638|ref|YP_002781420.1| hypothetical protein ROP_42280 ... 99.8 1e-19
gi|54022307|ref|YP_116549.1| hypothetical protein nfa3430 [Nocar... 98.6 3e-19
gi|120406385|ref|YP_956214.1| hypothetical protein Mvan_5438 [My... 97.8 5e-19
gi|325675304|ref|ZP_08154989.1| hypothetical protein HMPREF0724_... 97.4 6e-19
gi|237786554|ref|YP_002907259.1| hypothetical protein ckrop_2011... 95.9 2e-18
gi|296141603|ref|YP_003648846.1| hypothetical protein Tpau_3935 ... 95.5 2e-18
gi|333917935|ref|YP_004491516.1| hypothetical protein AS9A_0257 ... 94.7 4e-18
gi|333992597|ref|YP_004525211.1| hypothetical protein JDM601_395... 94.7 4e-18
gi|256374395|ref|YP_003098055.1| hypothetical protein Amir_0240 ... 94.0 8e-18
gi|336326582|ref|YP_004606548.1| hypothetical protein CRES_2031 ... 93.2 1e-17
gi|291006625|ref|ZP_06564598.1| hypothetical protein SeryN2_1906... 93.2 1e-17
gi|302530881|ref|ZP_07283223.1| endoribonuclease L-PSP [Streptom... 93.2 1e-17
gi|257057570|ref|YP_003135402.1| hypothetical protein Svir_36200... 92.8 1e-17
gi|300790650|ref|YP_003770941.1| hypothetical protein AMED_8848 ... 92.4 2e-17
gi|334563978|ref|ZP_08516969.1| hypothetical protein CbovD2_0534... 92.4 2e-17
gi|68537070|ref|YP_251775.1| hypothetical protein jk1975 [Coryne... 92.4 2e-17
gi|260579414|ref|ZP_05847296.1| conserved hypothetical protein [... 92.0 2e-17
gi|317506662|ref|ZP_07964452.1| hypothetical protein HMPREF9336_... 91.7 4e-17
gi|340795434|ref|YP_004760897.1| hypothetical protein CVAR_2479 ... 90.1 1e-16
gi|319949578|ref|ZP_08023623.1| hypothetical protein ES5_08988 [... 90.1 1e-16
gi|239918310|ref|YP_002957868.1| hypothetical protein Mlut_18310... 89.7 1e-16
gi|289704678|ref|ZP_06501106.1| conserved hypothetical protein [... 89.4 2e-16
gi|172041549|ref|YP_001801263.1| hypothetical protein cur_1870 [... 88.6 3e-16
gi|296393529|ref|YP_003658413.1| hypothetical protein Srot_1109 ... 88.2 4e-16
gi|227496748|ref|ZP_03927021.1| conserved hypothetical protein [... 86.7 1e-15
gi|340358492|ref|ZP_08681009.1| hypothetical protein HMPREF9062_... 85.9 2e-15
gi|326772557|ref|ZP_08231841.1| conserved hypothetical protein [... 85.5 2e-15
gi|227487274|ref|ZP_03917590.1| conserved hypothetical protein [... 85.5 3e-15
gi|329945575|ref|ZP_08293312.1| hypothetical protein HMPREF9056_... 85.1 3e-15
gi|320534532|ref|ZP_08034989.1| hypothetical protein HMPREF9057_... 85.1 3e-15
gi|291298586|ref|YP_003509864.1| hypothetical protein Snas_1061 ... 84.0 7e-15
gi|325066670|ref|ZP_08125343.1| hypothetical protein AoriK_02567... 84.0 7e-15
gi|330470544|ref|YP_004408287.1| hypothetical protein VAB18032_0... 83.6 8e-15
gi|296268192|ref|YP_003650824.1| hypothetical protein Tbis_0199 ... 83.6 9e-15
>gi|15843296|ref|NP_338333.1| hypothetical protein MT3780 [Mycobacterium tuberculosis CDC1551]
gi|31794849|ref|NP_857342.1| hypothetical protein Mb3703c [Mycobacterium bovis AF2122/97]
gi|57117143|ref|YP_178004.1| hypothetical protein Rv3678A [Mycobacterium tuberculosis H37Rv]
59 more sequence titles
Length=53
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/53 (100%), Positives = 53/53 (100%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK
Sbjct 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
>gi|240172240|ref|ZP_04750899.1| hypothetical protein MkanA1_23194 [Mycobacterium kansasii ATCC
12478]
Length=53
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/53 (99%), Positives = 53/53 (100%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
MTQP+AWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK
Sbjct 1 MTQPSAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
>gi|118619420|ref|YP_907752.1| hypothetical protein MUL_4253 [Mycobacterium ulcerans Agy99]
gi|118571530|gb|ABL06281.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=53
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/53 (99%), Positives = 52/53 (99%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
MTQPT WEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK
Sbjct 1 MTQPTTWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
>gi|289441111|ref|ZP_06430855.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289571919|ref|ZP_06452146.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289414030|gb|EFD11270.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289545673|gb|EFD49321.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=53
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/53 (99%), Positives = 53/53 (100%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
MTQPTAWEYATVPLLTHATKQIL+QWGADGWELVAVLPGPTGEQHVAYLKRPK
Sbjct 1 MTQPTAWEYATVPLLTHATKQILEQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
>gi|118465261|ref|YP_879732.1| hypothetical protein MAV_0450 [Mycobacterium avium 104]
gi|254773455|ref|ZP_05214971.1| hypothetical protein MaviaA2_02086 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118166548|gb|ABK67445.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336460829|gb|EGO39714.1| hypothetical protein MAPs_36500 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=53
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/53 (97%), Positives = 53/53 (100%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
M+QPTAWEYATVPLLTHATKQILDQWGADGWELV+VLPGPTGEQHVAYLKRPK
Sbjct 1 MSQPTAWEYATVPLLTHATKQILDQWGADGWELVSVLPGPTGEQHVAYLKRPK 53
>gi|108801784|ref|YP_641981.1| hypothetical protein Mmcs_4821 [Mycobacterium sp. MCS]
gi|119870935|ref|YP_940887.1| hypothetical protein Mkms_4907 [Mycobacterium sp. KMS]
gi|126437772|ref|YP_001073463.1| hypothetical protein Mjls_5208 [Mycobacterium sp. JLS]
gi|108772203|gb|ABG10925.1| hypothetical protein Mmcs_4821 [Mycobacterium sp. MCS]
gi|119697024|gb|ABL94097.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126237572|gb|ABO00973.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=67
Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/53 (97%), Positives = 52/53 (99%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
M+QPT WEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK
Sbjct 15 MSQPTQWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 67
>gi|296166736|ref|ZP_06849160.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897906|gb|EFG77488.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=53
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/53 (95%), Positives = 52/53 (99%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
M+QPTAWEY TVPLLTHATKQILDQWGADGWELV+VLPGPTGEQHVAYLKRPK
Sbjct 1 MSQPTAWEYVTVPLLTHATKQILDQWGADGWELVSVLPGPTGEQHVAYLKRPK 53
>gi|183985137|ref|YP_001853428.1| hypothetical protein MMAR_5167 [Mycobacterium marinum M]
gi|183178463|gb|ACC43573.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=53
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/53 (97%), Positives = 51/53 (97%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
MTQ T WEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK
Sbjct 1 MTQSTTWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
>gi|118469530|ref|YP_890412.1| hypothetical protein MSMEG_6192 [Mycobacterium smegmatis str.
MC2 155]
gi|118170817|gb|ABK71713.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=53
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/53 (91%), Positives = 52/53 (99%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
M++PT WEYATVPLLTHATKQILDQWG+DGWELV+VLPGPTGEQHVAYLKRPK
Sbjct 1 MSEPTRWEYATVPLLTHATKQILDQWGSDGWELVSVLPGPTGEQHVAYLKRPK 53
>gi|254820833|ref|ZP_05225834.1| hypothetical protein MintA_12943 [Mycobacterium intracellulare
ATCC 13950]
Length=53
Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/53 (93%), Positives = 51/53 (97%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
M+QPTAWEY TVPLLTHATKQILDQWGADGWELV+VL GPTGEQHVAYLKRPK
Sbjct 1 MSQPTAWEYVTVPLLTHATKQILDQWGADGWELVSVLNGPTGEQHVAYLKRPK 53
>gi|342861984|ref|ZP_08718628.1| hypothetical protein MCOL_23955 [Mycobacterium colombiense CECT
3035]
gi|342130524|gb|EGT83833.1| hypothetical protein MCOL_23955 [Mycobacterium colombiense CECT
3035]
Length=53
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/53 (93%), Positives = 51/53 (97%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
M+QPTAWEY TVPLLTHATKQILDQWGADGWELV+VL GPTGEQHVAYLKRPK
Sbjct 1 MSQPTAWEYVTVPLLTHATKQILDQWGADGWELVSVLQGPTGEQHVAYLKRPK 53
>gi|326383492|ref|ZP_08205179.1| hypothetical protein SCNU_11166 [Gordonia neofelifaecis NRRL
B-59395]
gi|326197898|gb|EGD55085.1| hypothetical protein SCNU_11166 [Gordonia neofelifaecis NRRL
B-59395]
Length=54
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/53 (91%), Positives = 51/53 (97%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
M++ TAWEY TVPLLTHATKQILDQWGADGWELV+VLPGPTGEQHVAYLKRPK
Sbjct 1 MSEVTAWEYVTVPLLTHATKQILDQWGADGWELVSVLPGPTGEQHVAYLKRPK 53
>gi|169627516|ref|YP_001701165.1| hypothetical protein MAB_0412 [Mycobacterium abscessus ATCC 19977]
gi|169239483|emb|CAM60511.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=53
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/53 (91%), Positives = 51/53 (97%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
MT+ TAWEYATVPLLTHATKQILDQWG+DGWELV+VLPGPTGEQHVAYLKR K
Sbjct 1 MTERTAWEYATVPLLTHATKQILDQWGSDGWELVSVLPGPTGEQHVAYLKRSK 53
>gi|343926466|ref|ZP_08765971.1| hypothetical protein GOALK_060_01300 [Gordonia alkanivorans NBRC
16433]
gi|343763704|dbj|GAA12897.1| hypothetical protein GOALK_060_01300 [Gordonia alkanivorans NBRC
16433]
Length=54
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/53 (91%), Positives = 51/53 (97%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
M++ TAWEY TVPLLTHATKQILDQWGADGWELV+VLPGPTGEQHVAYLKRPK
Sbjct 1 MSEVTAWEYVTVPLLTHATKQILDQWGADGWELVSVLPGPTGEQHVAYLKRPK 53
>gi|262200513|ref|YP_003271721.1| hypothetical protein Gbro_0498 [Gordonia bronchialis DSM 43247]
gi|262083860|gb|ACY19828.1| hypothetical protein Gbro_0498 [Gordonia bronchialis DSM 43247]
Length=54
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/53 (91%), Positives = 51/53 (97%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
M++ TAWEYATVPLLTHATKQILD WGADGWELV+VLPGPTGEQHVAYLKRPK
Sbjct 1 MSEVTAWEYATVPLLTHATKQILDTWGADGWELVSVLPGPTGEQHVAYLKRPK 53
>gi|315446304|ref|YP_004079183.1| hypothetical protein Mspyr1_48090 [Mycobacterium sp. Spyr1]
gi|315264607|gb|ADU01349.1| hypothetical protein Mspyr1_48090 [Mycobacterium sp. Spyr1]
Length=53
Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/53 (89%), Positives = 50/53 (95%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
M++PT WEYATVPLLTHATKQILDQWG DGWELV+VLPGPTGEQHVAYLKR K
Sbjct 1 MSEPTRWEYATVPLLTHATKQILDQWGEDGWELVSVLPGPTGEQHVAYLKRAK 53
>gi|226363638|ref|YP_002781420.1| hypothetical protein ROP_42280 [Rhodococcus opacus B4]
gi|226242127|dbj|BAH52475.1| hypothetical protein [Rhodococcus opacus B4]
Length=54
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/53 (89%), Positives = 49/53 (93%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
M++ T WEYATVPLLTHATKQILDQWG DGWELV VLPGPTGEQHVAYLKRPK
Sbjct 1 MSELTTWEYATVPLLTHATKQILDQWGTDGWELVTVLPGPTGEQHVAYLKRPK 53
>gi|54022307|ref|YP_116549.1| hypothetical protein nfa3430 [Nocardia farcinica IFM 10152]
gi|54013815|dbj|BAD55185.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=51
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/49 (96%), Positives = 47/49 (96%), Gaps = 0/49 (0%)
Query 5 TAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
T WEYATVPLLTHATKQILDQWGADGWELV VLPGPTGEQHVAYLKRPK
Sbjct 2 TTWEYATVPLLTHATKQILDQWGADGWELVTVLPGPTGEQHVAYLKRPK 50
>gi|120406385|ref|YP_956214.1| hypothetical protein Mvan_5438 [Mycobacterium vanbaalenii PYR-1]
gi|119959203|gb|ABM16208.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=53
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/53 (85%), Positives = 48/53 (91%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
M++ T WEYAT+PLL HATKQILDQWG DGWELVAVLP PTGEQHVAYLKRPK
Sbjct 1 MSERTRWEYATIPLLVHATKQILDQWGEDGWELVAVLPNPTGEQHVAYLKRPK 53
>gi|325675304|ref|ZP_08154989.1| hypothetical protein HMPREF0724_12771 [Rhodococcus equi ATCC
33707]
gi|325554010|gb|EGD23687.1| hypothetical protein HMPREF0724_12771 [Rhodococcus equi ATCC
33707]
Length=54
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/53 (87%), Positives = 48/53 (91%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
M++ T WEYATVPLLTHATK ILDQWG DGWELV VLPGPTGEQHVAYLKRPK
Sbjct 1 MSELTTWEYATVPLLTHATKAILDQWGGDGWELVTVLPGPTGEQHVAYLKRPK 53
>gi|237786554|ref|YP_002907259.1| hypothetical protein ckrop_2011 [Corynebacterium kroppenstedtii
DSM 44385]
gi|237759466|gb|ACR18716.1| hypothetical protein ckrop_2011 [Corynebacterium kroppenstedtii
DSM 44385]
Length=52
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/49 (88%), Positives = 47/49 (96%), Gaps = 0/49 (0%)
Query 5 TAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
T WEY+TVPLLTHATKQILD WGADGWELVAV+PGPTGEQH+AY+KRPK
Sbjct 2 TTWEYSTVPLLTHATKQILDTWGADGWELVAVMPGPTGEQHIAYMKRPK 50
>gi|296141603|ref|YP_003648846.1| hypothetical protein Tpau_3935 [Tsukamurella paurometabola DSM
20162]
gi|296029737|gb|ADG80507.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=54
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/52 (81%), Positives = 48/52 (93%), Gaps = 0/52 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRP 52
M++ T WEY+T+PLLTHATKQILD WG+DGWELV VLPGPTGEQHVAY+KRP
Sbjct 1 MSEKTTWEYSTIPLLTHATKQILDTWGSDGWELVTVLPGPTGEQHVAYMKRP 52
>gi|333917935|ref|YP_004491516.1| hypothetical protein AS9A_0257 [Amycolicicoccus subflavus DQS3-9A1]
gi|333480156|gb|AEF38716.1| hypothetical protein AS9A_0257 [Amycolicicoccus subflavus DQS3-9A1]
Length=53
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/53 (85%), Positives = 47/53 (89%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
M++ T WEYATVPLLTHATK ILDQWG DGWELV VLPGPTGEQHVAYLKR K
Sbjct 1 MSEITRWEYATVPLLTHATKAILDQWGEDGWELVTVLPGPTGEQHVAYLKRAK 53
>gi|333992597|ref|YP_004525211.1| hypothetical protein JDM601_3957 [Mycobacterium sp. JDM601]
gi|333488565|gb|AEF37957.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=53
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/53 (80%), Positives = 49/53 (93%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
M++ TAWEYA VPL+THATKQILDQWG DGWELV+VLPGP+GEQ +A+LKRPK
Sbjct 1 MSERTAWEYANVPLITHATKQILDQWGEDGWELVSVLPGPSGEQLIAFLKRPK 53
>gi|256374395|ref|YP_003098055.1| hypothetical protein Amir_0240 [Actinosynnema mirum DSM 43827]
gi|255918698|gb|ACU34209.1| hypothetical protein Amir_0240 [Actinosynnema mirum DSM 43827]
Length=51
Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/47 (94%), Positives = 45/47 (96%), Gaps = 0/47 (0%)
Query 7 WEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
WEYATVPLLTHATKQILDQWG DGWELV+VL GPTGEQHVAYLKRPK
Sbjct 4 WEYATVPLLTHATKQILDQWGEDGWELVSVLTGPTGEQHVAYLKRPK 50
>gi|336326582|ref|YP_004606548.1| hypothetical protein CRES_2031 [Corynebacterium resistens DSM
45100]
gi|336102564|gb|AEI10384.1| hypothetical protein CRES_2031 [Corynebacterium resistens DSM
45100]
Length=76
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/47 (92%), Positives = 44/47 (94%), Gaps = 0/47 (0%)
Query 5 TAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKR 51
T WEYATVPLLTHATKQILD WG DGWELV+VLPGPTGEQHVAYLKR
Sbjct 27 TKWEYATVPLLTHATKQILDNWGQDGWELVSVLPGPTGEQHVAYLKR 73
>gi|291006625|ref|ZP_06564598.1| hypothetical protein SeryN2_19061 [Saccharopolyspora erythraea
NRRL 2338]
Length=52
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/49 (88%), Positives = 46/49 (94%), Gaps = 0/49 (0%)
Query 5 TAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
T WEY+TVPLL+HATKQILDQWG DGWELVAVLPGPTGEQ VAY+KRPK
Sbjct 2 TKWEYSTVPLLSHATKQILDQWGEDGWELVAVLPGPTGEQMVAYMKRPK 50
>gi|302530881|ref|ZP_07283223.1| endoribonuclease L-PSP [Streptomyces sp. AA4]
gi|302439776|gb|EFL11592.1| endoribonuclease L-PSP [Streptomyces sp. AA4]
Length=62
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/49 (88%), Positives = 44/49 (90%), Gaps = 0/49 (0%)
Query 5 TAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
T WEYATVPLL HATKQILDQWG DGWELV VLP P+GEQHVAYLKRPK
Sbjct 13 TKWEYATVPLLIHATKQILDQWGEDGWELVTVLPNPSGEQHVAYLKRPK 61
>gi|257057570|ref|YP_003135402.1| hypothetical protein Svir_36200 [Saccharomonospora viridis DSM
43017]
gi|256587442|gb|ACU98575.1| hypothetical protein Svir_36200 [Saccharomonospora viridis DSM
43017]
Length=53
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/49 (88%), Positives = 44/49 (90%), Gaps = 0/49 (0%)
Query 5 TAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
T WEYATVPLL HATKQILDQWG DGWELV VLP P+GEQHVAYLKRPK
Sbjct 4 TKWEYATVPLLIHATKQILDQWGEDGWELVTVLPNPSGEQHVAYLKRPK 52
>gi|300790650|ref|YP_003770941.1| hypothetical protein AMED_8848 [Amycolatopsis mediterranei U32]
gi|299800164|gb|ADJ50539.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340532340|gb|AEK47545.1| hypothetical protein RAM_45400 [Amycolatopsis mediterranei S699]
Length=53
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/49 (88%), Positives = 44/49 (90%), Gaps = 0/49 (0%)
Query 5 TAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
T WEYATVPLL HATKQILDQWG DGWELV VLP P+GEQHVAYLKRPK
Sbjct 4 TKWEYATVPLLIHATKQILDQWGEDGWELVTVLPNPSGEQHVAYLKRPK 52
>gi|334563978|ref|ZP_08516969.1| hypothetical protein CbovD2_05342 [Corynebacterium bovis DSM
20582]
Length=50
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/49 (88%), Positives = 45/49 (92%), Gaps = 0/49 (0%)
Query 5 TAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
T+WEY TVPLLTHATKQILD WG DGWELV+VLPGPTGEQHVAYLKR K
Sbjct 2 TSWEYVTVPLLTHATKQILDTWGEDGWELVSVLPGPTGEQHVAYLKREK 50
>gi|68537070|ref|YP_251775.1| hypothetical protein jk1975 [Corynebacterium jeikeium K411]
gi|68264669|emb|CAI38157.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
Length=52
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/48 (88%), Positives = 44/48 (92%), Gaps = 0/48 (0%)
Query 5 TAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRP 52
T WEY TVPLLTHATKQILD WG DGWELV+VLPGPTGEQHVAY+KRP
Sbjct 2 TNWEYVTVPLLTHATKQILDNWGQDGWELVSVLPGPTGEQHVAYMKRP 49
>gi|260579414|ref|ZP_05847296.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
43734]
gi|258602543|gb|EEW15838.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
43734]
Length=52
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/48 (88%), Positives = 44/48 (92%), Gaps = 0/48 (0%)
Query 5 TAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRP 52
T WEY TVPLLTHATKQILD WG DGWELV+VLPGPTGEQHVAY+KRP
Sbjct 2 TKWEYVTVPLLTHATKQILDNWGQDGWELVSVLPGPTGEQHVAYMKRP 49
>gi|317506662|ref|ZP_07964452.1| hypothetical protein HMPREF9336_00822 [Segniliparus rugosus ATCC
BAA-974]
gi|316255045|gb|EFV14325.1| hypothetical protein HMPREF9336_00822 [Segniliparus rugosus ATCC
BAA-974]
Length=60
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/48 (86%), Positives = 44/48 (92%), Gaps = 0/48 (0%)
Query 6 AWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
AWEY TVPL+THATKQILDQWG+DGWELV VLPGPTGE H+AYLKR K
Sbjct 13 AWEYVTVPLITHATKQILDQWGSDGWELVTVLPGPTGESHIAYLKRKK 60
>gi|340795434|ref|YP_004760897.1| hypothetical protein CVAR_2479 [Corynebacterium variabile DSM
44702]
gi|340535344|gb|AEK37824.1| hypothetical protein CVAR_2479 [Corynebacterium variabile DSM
44702]
Length=50
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/49 (84%), Positives = 44/49 (90%), Gaps = 0/49 (0%)
Query 5 TAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
T WEYATVPLLTHATKQILD WG DGW+LV VLPGPTGEQH+AY+KR K
Sbjct 2 TTWEYATVPLLTHATKQILDTWGEDGWDLVTVLPGPTGEQHIAYMKREK 50
>gi|319949578|ref|ZP_08023623.1| hypothetical protein ES5_08988 [Dietzia cinnamea P4]
gi|319436754|gb|EFV91829.1| hypothetical protein ES5_08988 [Dietzia cinnamea P4]
Length=56
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/45 (89%), Positives = 44/45 (98%), Gaps = 0/45 (0%)
Query 7 WEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKR 51
+EY TVPLLTHATKQILDQWG+DGWELV+VLPGPTGEQHVAY+KR
Sbjct 10 FEYVTVPLLTHATKQILDQWGSDGWELVSVLPGPTGEQHVAYMKR 54
>gi|239918310|ref|YP_002957868.1| hypothetical protein Mlut_18310 [Micrococcus luteus NCTC 2665]
gi|281415494|ref|ZP_06247236.1| hypothetical protein MlutN2_09846 [Micrococcus luteus NCTC 2665]
gi|239839517|gb|ACS31314.1| hypothetical protein Mlut_18310 [Micrococcus luteus NCTC 2665]
Length=55
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/53 (80%), Positives = 44/53 (84%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
MTQ T WEYAT+PLL HATKQILDQWG DGWELV V+PGP G VAYLKRPK
Sbjct 1 MTQQTQWEYATIPLLIHATKQILDQWGEDGWELVTVIPGPEGNNPVAYLKRPK 53
>gi|289704678|ref|ZP_06501106.1| conserved hypothetical protein [Micrococcus luteus SK58]
gi|289558632|gb|EFD51895.1| conserved hypothetical protein [Micrococcus luteus SK58]
Length=58
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/53 (80%), Positives = 44/53 (84%), Gaps = 0/53 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
MTQ T WEYAT+PLL HATKQILDQWG DGWELV V+PGP G VAYLKRPK
Sbjct 4 MTQQTQWEYATIPLLIHATKQILDQWGEDGWELVTVIPGPEGNNPVAYLKRPK 56
>gi|172041549|ref|YP_001801263.1| hypothetical protein cur_1870 [Corynebacterium urealyticum DSM
7109]
gi|171852853|emb|CAQ05829.1| hypothetical protein cu1870 [Corynebacterium urealyticum DSM
7109]
Length=55
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/45 (89%), Positives = 42/45 (94%), Gaps = 0/45 (0%)
Query 7 WEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKR 51
WEY TVPLLTHATKQILD WG DGWELV+VLPGPTGEQHVAY+KR
Sbjct 8 WEYVTVPLLTHATKQILDNWGQDGWELVSVLPGPTGEQHVAYMKR 52
>gi|296393529|ref|YP_003658413.1| hypothetical protein Srot_1109 [Segniliparus rotundus DSM 44985]
gi|296180676|gb|ADG97582.1| hypothetical protein Srot_1109 [Segniliparus rotundus DSM 44985]
Length=60
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/48 (84%), Positives = 43/48 (90%), Gaps = 0/48 (0%)
Query 6 AWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
AWEY TVPL+THATKQILDQWG+DGWELV VLPG TGE H+AYLKR K
Sbjct 13 AWEYVTVPLITHATKQILDQWGSDGWELVTVLPGLTGESHIAYLKRKK 60
>gi|227496748|ref|ZP_03927021.1| conserved hypothetical protein [Actinomyces urogenitalis DSM
15434]
gi|226833740|gb|EEH66123.1| conserved hypothetical protein [Actinomyces urogenitalis DSM
15434]
Length=53
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 45/50 (90%), Gaps = 1/50 (2%)
Query 5 TAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQH-VAYLKRPK 53
T WEYAT+PLLTHATKQILDQWGADGWELV V+PGPTG + VAYLKRPK
Sbjct 2 TTWEYATIPLLTHATKQILDQWGADGWELVQVVPGPTGSDNLVAYLKRPK 51
>gi|340358492|ref|ZP_08681009.1| hypothetical protein HMPREF9062_0134 [Actinomyces sp. oral taxon
448 str. F0400]
gi|339886342|gb|EGQ76000.1| hypothetical protein HMPREF9062_0134 [Actinomyces sp. oral taxon
448 str. F0400]
Length=55
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/54 (78%), Positives = 44/54 (82%), Gaps = 1/54 (1%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQH-VAYLKRPK 53
MT T WEYATVPLL H TKQILDQWGADGWELV V+PGPTG VAYLKRP+
Sbjct 1 MTTSTTWEYATVPLLIHTTKQILDQWGADGWELVQVVPGPTGSDSLVAYLKRPR 54
>gi|326772557|ref|ZP_08231841.1| conserved hypothetical protein [Actinomyces viscosus C505]
gi|343523055|ref|ZP_08760020.1| hypothetical protein HMPREF9058_0184 [Actinomyces sp. oral taxon
175 str. F0384]
gi|326637189|gb|EGE38091.1| conserved hypothetical protein [Actinomyces viscosus C505]
gi|343400803|gb|EGV13315.1| hypothetical protein HMPREF9058_0184 [Actinomyces sp. oral taxon
175 str. F0384]
Length=63
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/51 (77%), Positives = 45/51 (89%), Gaps = 1/51 (1%)
Query 4 PTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQH-VAYLKRPK 53
PT WEY TVPL+THATKQILDQWGADGWELV V+PGP+G + +AYLKRP+
Sbjct 12 PTTWEYVTVPLITHATKQILDQWGADGWELVQVVPGPSGTDNLIAYLKRPR 62
>gi|227487274|ref|ZP_03917590.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227541559|ref|ZP_03971608.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227092932|gb|EEI28244.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227182657|gb|EEI63629.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
Length=58
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/52 (77%), Positives = 42/52 (81%), Gaps = 0/52 (0%)
Query 1 MTQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRP 52
MT T WEYATVPLLTHATKQILD WG DGWELV V+PGP E VAY+KRP
Sbjct 1 MTDMTKWEYATVPLLTHATKQILDTWGEDGWELVTVMPGPNPENVVAYMKRP 52
>gi|329945575|ref|ZP_08293312.1| hypothetical protein HMPREF9056_01199 [Actinomyces sp. oral taxon
170 str. F0386]
gi|328528755|gb|EGF55707.1| hypothetical protein HMPREF9056_01199 [Actinomyces sp. oral taxon
170 str. F0386]
Length=63
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/51 (79%), Positives = 45/51 (89%), Gaps = 1/51 (1%)
Query 4 PTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQH-VAYLKRPK 53
PT WEY TVPL+THATKQILDQWGADGWELV V+PGP+G + VAYLKRP+
Sbjct 12 PTTWEYVTVPLITHATKQILDQWGADGWELVQVVPGPSGTDNLVAYLKRPR 62
>gi|320534532|ref|ZP_08034989.1| hypothetical protein HMPREF9057_02890 [Actinomyces sp. oral taxon
171 str. F0337]
gi|320133265|gb|EFW25756.1| hypothetical protein HMPREF9057_02890 [Actinomyces sp. oral taxon
171 str. F0337]
Length=63
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/51 (75%), Positives = 45/51 (89%), Gaps = 1/51 (1%)
Query 4 PTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQH-VAYLKRPK 53
PT WEY TVPL+THATKQILDQWGADGWELV ++PGP+G + +AYLKRP+
Sbjct 12 PTTWEYVTVPLITHATKQILDQWGADGWELVQIVPGPSGTDNLIAYLKRPR 62
>gi|291298586|ref|YP_003509864.1| hypothetical protein Snas_1061 [Stackebrandtia nassauensis DSM
44728]
gi|290567806|gb|ADD40771.1| hypothetical protein Snas_1061 [Stackebrandtia nassauensis DSM
44728]
Length=57
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/47 (83%), Positives = 40/47 (86%), Gaps = 0/47 (0%)
Query 7 WEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
WEYATVPLL HATKQILD WG DGWELVAV+PGP E VAYLKRPK
Sbjct 8 WEYATVPLLVHATKQILDTWGEDGWELVAVVPGPNAENTVAYLKRPK 54
>gi|325066670|ref|ZP_08125343.1| hypothetical protein AoriK_02567 [Actinomyces oris K20]
Length=63
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/53 (72%), Positives = 45/53 (85%), Gaps = 1/53 (1%)
Query 2 TQPTAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQH-VAYLKRPK 53
+ P WEY TVPL+THATKQILDQWGADGWELV V+PGP+G + +AYLKRP+
Sbjct 10 SAPITWEYVTVPLITHATKQILDQWGADGWELVQVVPGPSGTDNLIAYLKRPR 62
>gi|330470544|ref|YP_004408287.1| hypothetical protein VAB18032_03015 [Verrucosispora maris AB-18-032]
gi|328813515|gb|AEB47687.1| hypothetical protein VAB18032_03015 [Verrucosispora maris AB-18-032]
Length=51
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/47 (83%), Positives = 41/47 (88%), Gaps = 0/47 (0%)
Query 7 WEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
WEYATVPLL HATKQILD WG DGWELV+V+PGP EQ VAYLKRPK
Sbjct 4 WEYATVPLLVHATKQILDNWGEDGWELVSVVPGPNPEQLVAYLKRPK 50
>gi|296268192|ref|YP_003650824.1| hypothetical protein Tbis_0199 [Thermobispora bispora DSM 43833]
gi|296090979|gb|ADG86931.1| hypothetical protein Tbis_0199 [Thermobispora bispora DSM 43833]
Length=51
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/49 (80%), Positives = 42/49 (86%), Gaps = 0/49 (0%)
Query 5 TAWEYATVPLLTHATKQILDQWGADGWELVAVLPGPTGEQHVAYLKRPK 53
T WEY TVPLLTHATKQILD WG +GWELVAV+PGP EQ VAY+KRPK
Sbjct 2 TKWEYVTVPLLTHATKQILDNWGDEGWELVAVVPGPNPEQLVAYMKRPK 50
Lambda K H
0.316 0.132 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130244412240
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40