BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3678c
Length=151
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610814|ref|NP_218195.1| hypothetical protein Rv3678c [Mycob... 293 5e-78
gi|118619419|ref|YP_907751.1| hypothetical protein MUL_4252 [Myc... 262 1e-68
gi|167970829|ref|ZP_02553106.1| hypothetical protein MtubH3_2342... 261 3e-68
gi|296166735|ref|ZP_06849159.1| endoribonuclease L-PSP family pr... 256 1e-66
gi|254820834|ref|ZP_05225835.1| translation initiation inhibitor... 246 9e-64
gi|41406494|ref|NP_959330.1| hypothetical protein MAP0396 [Mycob... 245 2e-63
gi|118467024|ref|YP_879733.1| translation initiation inhibitor [... 245 2e-63
gi|254773456|ref|ZP_05214972.1| hypothetical protein MaviaA2_020... 244 2e-63
gi|333992596|ref|YP_004525210.1| hypothetical protein JDM601_395... 236 1e-60
gi|240172239|ref|ZP_04750898.1| hypothetical protein MkanA1_2318... 233 9e-60
gi|15828236|ref|NP_302499.1| hypothetical protein ML2304 [Mycoba... 229 1e-58
gi|342861985|ref|ZP_08718629.1| hypothetical protein MCOL_23960 ... 228 2e-58
gi|108801783|ref|YP_641980.1| endoribonuclease L-PSP [Mycobacter... 214 4e-54
gi|333917936|ref|YP_004491517.1| hypothetical protein AS9A_0258 ... 207 3e-52
gi|226363639|ref|YP_002781421.1| hypothetical protein ROP_42290 ... 207 4e-52
gi|325002654|ref|ZP_08123766.1| endoribonuclease L-PSP [Pseudono... 201 3e-50
gi|296268193|ref|YP_003650825.1| endoribonuclease L-PSP [Thermob... 201 3e-50
gi|302530880|ref|ZP_07283222.1| endoribonuclease L-PSP [Streptom... 201 4e-50
gi|300790649|ref|YP_003770940.1| endoribonuclease L-PSP [Amycola... 200 6e-50
gi|258650960|ref|YP_003200116.1| endoribonuclease L-PSP [Nakamur... 199 1e-49
gi|227549678|ref|ZP_03979727.1| possible endoribonuclease L-PSP ... 198 2e-49
gi|118469169|ref|YP_890411.1| translation initiation inhibitor [... 197 6e-49
gi|318060855|ref|ZP_07979578.1| endoribonuclease [Streptomyces s... 195 2e-48
gi|290958574|ref|YP_003489756.1| endoribonuclease [Streptomyces ... 195 2e-48
gi|302559360|ref|ZP_07311702.1| endoribonuclease L-PSP family pr... 194 3e-48
gi|297193054|ref|ZP_06910452.1| translation initiation inhibitor... 194 4e-48
gi|343926467|ref|ZP_08765972.1| hypothetical protein GOALK_060_0... 194 4e-48
gi|289763856|ref|ZP_06523234.1| conserved hypothetical protein [... 194 5e-48
gi|319949579|ref|ZP_08023624.1| endoribonuclease L-PSP [Dietzia ... 194 5e-48
gi|291438178|ref|ZP_06577568.1| conserved hypothetical protein [... 194 5e-48
gi|238061498|ref|ZP_04606207.1| endoribonuclease L-PSP [Micromon... 193 6e-48
gi|311897034|dbj|BAJ29442.1| putative YjgF/YER057c/UK114 family ... 193 6e-48
gi|329939393|ref|ZP_08288729.1| endoribonuclease [Streptomyces g... 193 7e-48
gi|302553055|ref|ZP_07305397.1| translation initiation inhibitor... 192 2e-47
gi|21221993|ref|NP_627772.1| hypothetical protein SCO3575 [Strep... 192 2e-47
gi|296118070|ref|ZP_06836652.1| endoribonuclease L-PSP family pr... 192 2e-47
gi|294630569|ref|ZP_06709129.1| endoribonuclease L-PSP family pr... 190 5e-47
gi|145221961|ref|YP_001132639.1| endoribonuclease L-PSP [Mycobac... 190 6e-47
gi|269129038|ref|YP_003302408.1| endoribonuclease L-PSP [Thermom... 190 7e-47
gi|29831131|ref|NP_825765.1| hypothetical protein SAV_4588 [Stre... 189 8e-47
gi|334338143|ref|YP_004543295.1| Endoribonuclease L-PSP [Isopter... 189 9e-47
gi|254391708|ref|ZP_05006905.1| conserved hypothetical protein [... 189 2e-46
gi|302535310|ref|ZP_07287652.1| translation initiation inhibitor... 188 2e-46
gi|120406384|ref|YP_956213.1| endoribonuclease L-PSP [Mycobacter... 188 2e-46
gi|256374396|ref|YP_003098056.1| endoribonuclease L-PSP [Actinos... 187 3e-46
gi|306835032|ref|ZP_07468078.1| endoribonuclease L-PSP family pr... 187 4e-46
gi|182437129|ref|YP_001824848.1| hypothetical protein SGR_3336 [... 187 4e-46
gi|254385582|ref|ZP_05000907.1| conserved hypothetical protein [... 187 5e-46
gi|227502461|ref|ZP_03932510.1| possible endoribonuclease L-PSP ... 187 5e-46
gi|227505669|ref|ZP_03935718.1| possible endoribonuclease L-PSP ... 187 5e-46
>gi|15610814|ref|NP_218195.1| hypothetical protein Rv3678c [Mycobacterium tuberculosis H37Rv]
gi|15843295|ref|NP_338332.1| hypothetical protein MT3779 [Mycobacterium tuberculosis CDC1551]
gi|31794848|ref|NP_857341.1| hypothetical protein Mb3702c [Mycobacterium bovis AF2122/97]
74 more sequence titles
Length=151
Score = 293 bits (750), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 151/151 (100%), Positives = 151/151 (100%), Gaps = 0/151 (0%)
Query 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE
Sbjct 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
Query 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF 120
EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF
Sbjct 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF 120
Query 121 GDSGAHARSAVGVSELPLDAPVEVELIVEVG 151
GDSGAHARSAVGVSELPLDAPVEVELIVEVG
Sbjct 121 GDSGAHARSAVGVSELPLDAPVEVELIVEVG 151
>gi|118619419|ref|YP_907751.1| hypothetical protein MUL_4252 [Mycobacterium ulcerans Agy99]
gi|183985136|ref|YP_001853427.1| hypothetical protein MMAR_5166 [Mycobacterium marinum M]
gi|118571529|gb|ABL06280.1| conserved protein with endoribonuclease L-PSP domain [Mycobacterium
ulcerans Agy99]
gi|183178462|gb|ACC43572.1| conserved protein with endoribonuclease L-PSP domain [Mycobacterium
marinum M]
Length=151
Score = 262 bits (669), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 130/151 (87%), Positives = 144/151 (96%), Gaps = 0/151 (0%)
Query 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
M+A +RL +LG+TLPQVAAPLAAYVPAVRTGNL+YTAGQLPLEAGKL+ TGK+GA+V PE
Sbjct 1 MNATSRLAELGITLPQVAAPLAAYVPAVRTGNLIYTAGQLPLEAGKLLGTGKVGANVTPE 60
Query 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF 120
EGK LAR+CALNALAAV+SLVD+D+VTRVVKVVGFVASAPGFHGQP+VINGASDLLAEVF
Sbjct 61 EGKALARVCALNALAAVNSLVDIDSVTRVVKVVGFVASAPGFHGQPNVINGASDLLAEVF 120
Query 121 GDSGAHARSAVGVSELPLDAPVEVELIVEVG 151
GD G HARSAVGV+ELPLDAPVEVELIVEVG
Sbjct 121 GDKGVHARSAVGVAELPLDAPVEVELIVEVG 151
>gi|167970829|ref|ZP_02553106.1| hypothetical protein MtubH3_23420 [Mycobacterium tuberculosis
H37Ra]
gi|294995416|ref|ZP_06801107.1| hypothetical protein Mtub2_13106 [Mycobacterium tuberculosis
210]
gi|297733348|ref|ZP_06962466.1| hypothetical protein MtubKR_19750 [Mycobacterium tuberculosis
KZN R506]
gi|339296486|gb|AEJ48597.1| hypothetical protein CCDC5079_3408 [Mycobacterium tuberculosis
CCDC5079]
Length=135
Score = 261 bits (666), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 134/135 (99%), Positives = 135/135 (100%), Gaps = 0/135 (0%)
Query 17 VAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGKTLARICALNALAA 76
+AAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGKTLARICALNALAA
Sbjct 1 MAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGKTLARICALNALAA 60
Query 77 VDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGDSGAHARSAVGVSEL 136
VDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGDSGAHARSAVGVSEL
Sbjct 61 VDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGDSGAHARSAVGVSEL 120
Query 137 PLDAPVEVELIVEVG 151
PLDAPVEVELIVEVG
Sbjct 121 PLDAPVEVELIVEVG 135
>gi|296166735|ref|ZP_06849159.1| endoribonuclease L-PSP family protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897905|gb|EFG77487.1| endoribonuclease L-PSP family protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=154
Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/151 (87%), Positives = 141/151 (94%), Gaps = 0/151 (0%)
Query 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
M+A ARL QLGVTLP+V APLAAYVPAVRTGNLVYTAGQLP++AG+L TGK+GA + PE
Sbjct 1 MTASARLAQLGVTLPEVVAPLAAYVPAVRTGNLVYTAGQLPMQAGQLAVTGKVGAQLGPE 60
Query 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF 120
EGK +ARICALNALAAVDSLV +DAVTRVVKVVGFVASAPGF+GQPSVINGAS+LLAEVF
Sbjct 61 EGKAMARICALNALAAVDSLVGIDAVTRVVKVVGFVASAPGFNGQPSVINGASELLAEVF 120
Query 121 GDSGAHARSAVGVSELPLDAPVEVELIVEVG 151
GD GAHARSAVGVSELPLDAPVEVELIVEVG
Sbjct 121 GDDGAHARSAVGVSELPLDAPVEVELIVEVG 151
>gi|254820834|ref|ZP_05225835.1| translation initiation inhibitor [Mycobacterium intracellulare
ATCC 13950]
Length=155
Score = 246 bits (628), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 126/150 (84%), Positives = 137/150 (92%), Gaps = 0/150 (0%)
Query 2 SAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEE 61
S KARL +L + LP+V APLA+YVPAVRTG+LVYTAGQLP+ AGKL TGKLGA+V P+E
Sbjct 6 SWKARLAELDLALPEVVAPLASYVPAVRTGDLVYTAGQLPMRAGKLAGTGKLGAEVTPDE 65
Query 62 GKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFG 121
GK LARICALNALAAVDSLV +D+VTRVVKVVGFVASAPGF+GQPSVINGASDLL EVFG
Sbjct 66 GKALARICALNALAAVDSLVGIDSVTRVVKVVGFVASAPGFNGQPSVINGASDLLGEVFG 125
Query 122 DSGAHARSAVGVSELPLDAPVEVELIVEVG 151
D GAHARSAVGVSELPLDAPVEVELIVEVG
Sbjct 126 DRGAHARSAVGVSELPLDAPVEVELIVEVG 155
>gi|41406494|ref|NP_959330.1| hypothetical protein MAP0396 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41394843|gb|AAS02713.1| hypothetical protein MAP_0396 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336460828|gb|EGO39713.1| putative translation initiation inhibitor, yjgF family [Mycobacterium
avium subsp. paratuberculosis S397]
Length=158
Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/150 (82%), Positives = 139/150 (93%), Gaps = 0/150 (0%)
Query 2 SAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEE 61
S KARL +LG+TLP+V APLA+YVPAVRTGNLVYTAGQLP++ GKL TGK+GA ++P+E
Sbjct 6 SWKARLAELGLTLPEVVAPLASYVPAVRTGNLVYTAGQLPMQDGKLAATGKVGAHISPDE 65
Query 62 GKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFG 121
G+ LARICALNALAAVD+LV +DAVTRVVKVVGFVASAPGF+GQPSV+NGASDLLAEVFG
Sbjct 66 GRALARICALNALAAVDALVGIDAVTRVVKVVGFVASAPGFNGQPSVVNGASDLLAEVFG 125
Query 122 DSGAHARSAVGVSELPLDAPVEVELIVEVG 151
+ GAHARSAVGV ELPLDAPVEVELIVEVG
Sbjct 126 EHGAHARSAVGVGELPLDAPVEVELIVEVG 155
>gi|118467024|ref|YP_879733.1| translation initiation inhibitor [Mycobacterium avium 104]
gi|118168311|gb|ABK69208.1| translation initiation inhibitor [Mycobacterium avium 104]
Length=158
Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/150 (82%), Positives = 138/150 (92%), Gaps = 0/150 (0%)
Query 2 SAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEE 61
S KARL +LG+TLP+V APLA+YVPAVRTGNLVYTAGQLP++ GKL TGK+GA + P+E
Sbjct 6 SWKARLAELGLTLPEVVAPLASYVPAVRTGNLVYTAGQLPMQDGKLATTGKVGAHITPDE 65
Query 62 GKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFG 121
G+ LARICALNALAAVD+LV +DAVTRVVKVVGFVASAPGF+GQPSV+NGASDLLAEVFG
Sbjct 66 GRALARICALNALAAVDALVGIDAVTRVVKVVGFVASAPGFNGQPSVVNGASDLLAEVFG 125
Query 122 DSGAHARSAVGVSELPLDAPVEVELIVEVG 151
+ GAHARSAVGV ELPLDAPVEVELIVEVG
Sbjct 126 EHGAHARSAVGVGELPLDAPVEVELIVEVG 155
>gi|254773456|ref|ZP_05214972.1| hypothetical protein MaviaA2_02091 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=158
Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/150 (82%), Positives = 138/150 (92%), Gaps = 0/150 (0%)
Query 2 SAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEE 61
S KARL +LG+TLP+V APLA+YVPAVRTGNLVYTAGQLP++ GKL TGK+GA + P+E
Sbjct 6 SWKARLAELGLTLPEVVAPLASYVPAVRTGNLVYTAGQLPMQDGKLAATGKVGAHITPDE 65
Query 62 GKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFG 121
G+ LARICALNALAAVD+LV +DAVTRVVKVVGFVASAPGF+GQPSV+NGASDLLAEVFG
Sbjct 66 GRALARICALNALAAVDALVGIDAVTRVVKVVGFVASAPGFNGQPSVVNGASDLLAEVFG 125
Query 122 DSGAHARSAVGVSELPLDAPVEVELIVEVG 151
+ GAHARSAVGV ELPLDAPVEVELIVEVG
Sbjct 126 EHGAHARSAVGVGELPLDAPVEVELIVEVG 155
>gi|333992596|ref|YP_004525210.1| hypothetical protein JDM601_3956 [Mycobacterium sp. JDM601]
gi|333488564|gb|AEF37956.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=151
Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/151 (77%), Positives = 136/151 (91%), Gaps = 0/151 (0%)
Query 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
MS +ARL +LG+ LP+ AAPLA+YVPAVRTG+LVYT+GQLP+ GKL R+GK+GA+V+PE
Sbjct 1 MSWRARLSELGIELPETAAPLASYVPAVRTGDLVYTSGQLPMTGGKLARSGKVGAEVSPE 60
Query 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF 120
EG LARICALNALAAVD+LV +DAVTRVVKVVGFVAS P F+GQP V+NGAS+LL EVF
Sbjct 61 EGHALARICALNALAAVDALVGIDAVTRVVKVVGFVASVPTFNGQPGVVNGASELLGEVF 120
Query 121 GDSGAHARSAVGVSELPLDAPVEVELIVEVG 151
G++GAHARSAVGVS LPLDAPVEVELIVE+G
Sbjct 121 GEAGAHARSAVGVSALPLDAPVEVELIVEIG 151
>gi|240172239|ref|ZP_04750898.1| hypothetical protein MkanA1_23189 [Mycobacterium kansasii ATCC
12478]
Length=135
Score = 233 bits (593), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 118/133 (89%), Positives = 124/133 (94%), Gaps = 0/133 (0%)
Query 19 APLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGKTLARICALNALAAVD 78
APLAAYVPAVRTGNLVYT+GQLP EAGKL TGK+GAD+ PEE K ARICALNALAAVD
Sbjct 3 APLAAYVPAVRTGNLVYTSGQLPFEAGKLACTGKVGADITPEEAKAAARICALNALAAVD 62
Query 79 SLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGDSGAHARSAVGVSELPL 138
SLV LD+VTRVVKVVGFVASAPGFHGQPS+INGASDLLAEVFGD+GAHARSAVGVSELPL
Sbjct 63 SLVGLDSVTRVVKVVGFVASAPGFHGQPSIINGASDLLAEVFGDNGAHARSAVGVSELPL 122
Query 139 DAPVEVELIVEVG 151
APVEVELIVEVG
Sbjct 123 GAPVEVELIVEVG 135
>gi|15828236|ref|NP_302499.1| hypothetical protein ML2304 [Mycobacterium leprae TN]
gi|221230713|ref|YP_002504129.1| hypothetical protein MLBr_02304 [Mycobacterium leprae Br4923]
gi|13093929|emb|CAC31820.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933820|emb|CAR72402.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=174
Score = 229 bits (584), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/151 (79%), Positives = 133/151 (89%), Gaps = 0/151 (0%)
Query 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
MS ARLGQLG+ LPQ A PLA+YV AVRTGNLVYT+GQLP+E G+L +TGK+GADV+
Sbjct 24 MSVLARLGQLGIELPQAAPPLASYVSAVRTGNLVYTSGQLPIEDGRLPQTGKVGADVSLG 83
Query 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF 120
EGK LARICALNALAAVDSLV LD+VT VVKVVGFVAS+ GF+GQPSV+NGASDL AEVF
Sbjct 84 EGKALARICALNALAAVDSLVGLDSVTGVVKVVGFVASSSGFNGQPSVVNGASDLFAEVF 143
Query 121 GDSGAHARSAVGVSELPLDAPVEVELIVEVG 151
GD G HARSAVGV+ELPL APVE+ELIVE+G
Sbjct 144 GDRGRHARSAVGVAELPLGAPVEIELIVELG 174
>gi|342861985|ref|ZP_08718629.1| hypothetical protein MCOL_23960 [Mycobacterium colombiense CECT
3035]
gi|342130525|gb|EGT83834.1| hypothetical protein MCOL_23960 [Mycobacterium colombiense CECT
3035]
Length=151
Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/151 (84%), Positives = 140/151 (93%), Gaps = 0/151 (0%)
Query 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
MSA ARLGQLG+ LP+V APLA+YVPAVRTGNLVYTAGQLP+ GKL+ TGK+GADV P+
Sbjct 1 MSASARLGQLGLALPEVVAPLASYVPAVRTGNLVYTAGQLPMRDGKLLATGKVGADVGPD 60
Query 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF 120
EGK +ARICALNALAAV++LV +D VTRVVKVVGFVASAPGF+GQPSVINGAS+LLAEVF
Sbjct 61 EGKAMARICALNALAAVNALVGIDEVTRVVKVVGFVASAPGFNGQPSVINGASELLAEVF 120
Query 121 GDSGAHARSAVGVSELPLDAPVEVELIVEVG 151
G+ GAHARSAVGVSELPLDAPVEVELIVEVG
Sbjct 121 GEQGAHARSAVGVSELPLDAPVEVELIVEVG 151
>gi|108801783|ref|YP_641980.1| endoribonuclease L-PSP [Mycobacterium sp. MCS]
gi|119870934|ref|YP_940886.1| endoribonuclease L-PSP [Mycobacterium sp. KMS]
gi|126437771|ref|YP_001073462.1| endoribonuclease L-PSP [Mycobacterium sp. JLS]
gi|108772202|gb|ABG10924.1| Endoribonuclease L-PSP [Mycobacterium sp. MCS]
gi|119697023|gb|ABL94096.1| Endoribonuclease L-PSP [Mycobacterium sp. KMS]
gi|126237571|gb|ABO00972.1| Endoribonuclease L-PSP [Mycobacterium sp. JLS]
Length=162
Score = 214 bits (545), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 106/140 (76%), Positives = 123/140 (88%), Gaps = 0/140 (0%)
Query 2 SAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEE 61
S RL +LG+ LP+V APLAAYVPAVRTGNLVYTAGQLP+ +G+L RTGK+GADV+P++
Sbjct 13 SWSERLAELGIELPEVVAPLAAYVPAVRTGNLVYTAGQLPIVSGELTRTGKVGADVDPDD 72
Query 62 GKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFG 121
K LAR+C LNALAAVD+LV +DAVTRVVKVVGFVASAPGF GQP V+NGAS+L EVFG
Sbjct 73 AKDLARLCGLNALAAVDALVGIDAVTRVVKVVGFVASAPGFGGQPGVVNGASELFGEVFG 132
Query 122 DSGAHARSAVGVSELPLDAP 141
D+GAHARSAVGVSELP +AP
Sbjct 133 DAGAHARSAVGVSELPRNAP 152
>gi|333917936|ref|YP_004491517.1| hypothetical protein AS9A_0258 [Amycolicicoccus subflavus DQS3-9A1]
gi|333480157|gb|AEF38717.1| hypothetical protein AS9A_0258 [Amycolicicoccus subflavus DQS3-9A1]
Length=153
Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/145 (73%), Positives = 122/145 (85%), Gaps = 0/145 (0%)
Query 6 RLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGKTL 65
RL +LG+TLP V P+AAYVPAV+ G+ VYT+GQLPL AG L GK+G DV PEE K +
Sbjct 7 RLKELGLTLPPVVPPVAAYVPAVQAGDFVYTSGQLPLVAGGLPAVGKVGTDVAPEEAKEM 66
Query 66 ARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGDSGA 125
ARIC LNALAA+D+LV LDAV RVVKVVGFVAS PGF GQP V+NGAS+LL EVFG++G
Sbjct 67 ARICGLNALAAIDALVGLDAVERVVKVVGFVASGPGFTGQPQVVNGASELLGEVFGEAGK 126
Query 126 HARSAVGVSELPLDAPVEVELIVEV 150
HARSAVGV+ELPLDAPVEVE+IV+V
Sbjct 127 HARSAVGVAELPLDAPVEVEMIVQV 151
>gi|226363639|ref|YP_002781421.1| hypothetical protein ROP_42290 [Rhodococcus opacus B4]
gi|226242128|dbj|BAH52476.1| hypothetical protein [Rhodococcus opacus B4]
Length=158
Score = 207 bits (527), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/145 (73%), Positives = 120/145 (83%), Gaps = 0/145 (0%)
Query 6 RLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGKTL 65
RL +LG+TLP V P+AAYVPAVRTGN VYT+GQLP+ GKL GKLGA V+ E+ K
Sbjct 10 RLTELGITLPSVVPPVAAYVPAVRTGNYVYTSGQLPIVEGKLTHAGKLGAGVSDEDAKAA 69
Query 66 ARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGDSGA 125
AR CALNALAAVD+LV +D+V R+VKVVGFVASA GF GQP V+NGAS+ L EVFGD+GA
Sbjct 70 ARTCALNALAAVDALVGIDSVVRIVKVVGFVASAEGFTGQPGVVNGASEFLGEVFGDAGA 129
Query 126 HARSAVGVSELPLDAPVEVELIVEV 150
HARSAVGV+ELPL APVEVELI EV
Sbjct 130 HARSAVGVAELPLGAPVEVELIAEV 154
>gi|325002654|ref|ZP_08123766.1| endoribonuclease L-PSP [Pseudonocardia sp. P1]
Length=151
Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/151 (71%), Positives = 122/151 (81%), Gaps = 0/151 (0%)
Query 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
MSA ARL LG LP VAAP AY+PA R+GNLV+TAGQ+P G + TGK+GA+V+ E
Sbjct 1 MSALARLKDLGHALPPVAAPAGAYIPARRSGNLVFTAGQVPFVDGVVAATGKVGAEVSAE 60
Query 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF 120
+ LARIC LNALAAVD+LV LD+VT VVKVVGFVAS P F GQP V+NGASDLL EVF
Sbjct 61 QAYDLARICTLNALAAVDALVGLDSVTGVVKVVGFVASDPSFTGQPGVVNGASDLLGEVF 120
Query 121 GDSGAHARSAVGVSELPLDAPVEVELIVEVG 151
G+SGAHARSAVGV+ LPLD PVEVEL+VEVG
Sbjct 121 GESGAHARSAVGVAVLPLDVPVEVELLVEVG 151
>gi|296268193|ref|YP_003650825.1| endoribonuclease L-PSP [Thermobispora bispora DSM 43833]
gi|296090980|gb|ADG86932.1| Endoribonuclease L-PSP [Thermobispora bispora DSM 43833]
Length=153
Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/152 (72%), Positives = 127/152 (84%), Gaps = 2/152 (1%)
Query 1 MSA-KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNP 59
MSA + RL +LG+ LP+VAAPLAAYVPAVR+ VYT+GQLPL GKL TGK+GA+V
Sbjct 1 MSAPEQRLAELGLALPEVAAPLAAYVPAVRSDAYVYTSGQLPLVEGKLPVTGKVGAEVPV 60
Query 60 EEGKTLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAE 118
EE + LARICALNALAAV S+V DL +V R+VKVVGFVASAPGF GQP V+NGAS+LL +
Sbjct 61 EEAQRLARICALNALAAVKSVVGDLSSVVRIVKVVGFVASAPGFTGQPQVVNGASELLVD 120
Query 119 VFGDSGAHARSAVGVSELPLDAPVEVELIVEV 150
VFG++G HARSAVGV+ LPLDAPVEVELI EV
Sbjct 121 VFGEAGKHARSAVGVAVLPLDAPVEVELIAEV 152
>gi|302530880|ref|ZP_07283222.1| endoribonuclease L-PSP [Streptomyces sp. AA4]
gi|302439775|gb|EFL11591.1| endoribonuclease L-PSP [Streptomyces sp. AA4]
Length=151
Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 102/150 (68%), Positives = 122/150 (82%), Gaps = 0/150 (0%)
Query 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
M+ RL +LG+ LP VAAPLAAYVPAVRTG+ VYT+GQLP G L TGK+G +V+PE
Sbjct 1 MTWSDRLAELGIELPGVAAPLAAYVPAVRTGSHVYTSGQLPFVDGSLAATGKVGGEVSPE 60
Query 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF 120
E K AR LNALAAV +LV +D+V R+VKVVGFVASA GF GQP+V+NGAS+LL E+F
Sbjct 61 EAKGHARTATLNALAAVHALVGIDSVVRIVKVVGFVASAEGFTGQPAVVNGASELLGEIF 120
Query 121 GDSGAHARSAVGVSELPLDAPVEVELIVEV 150
GD+G HARSAVGV+ELP+ +PVEVELIVEV
Sbjct 121 GDAGVHARSAVGVAELPIASPVEVELIVEV 150
>gi|300790649|ref|YP_003770940.1| endoribonuclease L-PSP [Amycolatopsis mediterranei U32]
gi|299800163|gb|ADJ50538.1| endoribonuclease L-PSP [Amycolatopsis mediterranei U32]
gi|340532339|gb|AEK47544.1| endoribonuclease L-PSP [Amycolatopsis mediterranei S699]
Length=151
Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 103/150 (69%), Positives = 123/150 (82%), Gaps = 0/150 (0%)
Query 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
M+ RL +LG+ LP VAAPLAAYVPAV++G VYT+GQLP G L TGK+GA+++PE
Sbjct 1 MTWSDRLKELGIELPGVAAPLAAYVPAVQSGKHVYTSGQLPFVDGVLAATGKVGAEISPE 60
Query 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF 120
E K AR ALNALAAVD+LV +D V R+VKVVGFVASA GF GQP+V+NGAS+LL EVF
Sbjct 61 EAKGHARTSALNALAAVDALVGIDNVARIVKVVGFVASAEGFTGQPAVVNGASELLGEVF 120
Query 121 GDSGAHARSAVGVSELPLDAPVEVELIVEV 150
GD+G HARSAVGV+ELP+ +PVEVELIVEV
Sbjct 121 GDAGIHARSAVGVAELPIGSPVEVELIVEV 150
>gi|258650960|ref|YP_003200116.1| endoribonuclease L-PSP [Nakamurella multipartita DSM 44233]
gi|258554185|gb|ACV77127.1| Endoribonuclease L-PSP [Nakamurella multipartita DSM 44233]
Length=152
Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/149 (68%), Positives = 120/149 (81%), Gaps = 0/149 (0%)
Query 2 SAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEE 61
S ARL +LG+TLPQVA P +Y+P RTGNL++TAGQLP G+L TGK+GA+V+PE+
Sbjct 3 SPSARLAELGITLPQVATPAGSYLPTARTGNLLFTAGQLPFVDGRLPATGKVGAEVSPED 62
Query 62 GKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFG 121
K AR+ LN LAA+DS V LDAV RVVK+VGFVASA GF GQP VING SDL+AEVFG
Sbjct 63 AKEYARLAGLNVLAAIDSAVGLDAVERVVKIVGFVASAEGFTGQPGVINGVSDLMAEVFG 122
Query 122 DSGAHARSAVGVSELPLDAPVEVELIVEV 150
++G HARSAVGV+ELPL +PVEVE IV+V
Sbjct 123 EAGRHARSAVGVAELPLGSPVEVEAIVQV 151
>gi|227549678|ref|ZP_03979727.1| possible endoribonuclease L-PSP [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078255|gb|EEI16218.1| possible endoribonuclease L-PSP [Corynebacterium lipophiloflavum
DSM 44291]
Length=157
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/145 (70%), Positives = 120/145 (83%), Gaps = 0/145 (0%)
Query 6 RLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGKTL 65
RL LG+ LP+V APLAAYVPA R GN V+T+GQLPL G L TGK+GA+V+ ++G L
Sbjct 8 RLSALGLELPEVVAPLAAYVPATRVGNQVWTSGQLPLVDGSLPATGKVGAEVSEDQGYEL 67
Query 66 ARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGDSGA 125
AR LNALAA+D+LV LD VTRV+KVVGFVASAPGF GQP VING S+L+ EVFGD+GA
Sbjct 68 ARRACLNALAAIDALVGLDNVTRVIKVVGFVASAPGFTGQPKVINGVSELIGEVFGDAGA 127
Query 126 HARSAVGVSELPLDAPVEVELIVEV 150
HARSAVGV+ LPLD+PVE+E+IVEV
Sbjct 128 HARSAVGVAVLPLDSPVEIEIIVEV 152
>gi|118469169|ref|YP_890411.1| translation initiation inhibitor [Mycobacterium smegmatis str.
MC2 155]
gi|118170456|gb|ABK71352.1| translation initiation inhibitor [Mycobacterium smegmatis str.
MC2 155]
Length=158
Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 102/149 (69%), Positives = 126/149 (85%), Gaps = 0/149 (0%)
Query 2 SAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEE 61
S ARL +LG+ LP V P+AAYVPAV TGN VYT+GQLP+ G+L++ GK+GA+V+ EE
Sbjct 5 SWSARLAELGIELPGVVPPVAAYVPAVHTGNHVYTSGQLPIRGGELIKAGKVGAEVSAEE 64
Query 62 GKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFG 121
K LAR+C LNALAAV +LV +D+V +VVKVVGFVASAPGF GQP V+NGAS+L E+FG
Sbjct 65 AKELARVCGLNALAAVHALVGIDSVVKVVKVVGFVASAPGFGGQPGVVNGASELFGEIFG 124
Query 122 DSGAHARSAVGVSELPLDAPVEVELIVEV 150
D+GAHARSAVGV+ELP++APVEVE+IVEV
Sbjct 125 DAGAHARSAVGVAELPINAPVEVEIIVEV 153
>gi|318060855|ref|ZP_07979578.1| endoribonuclease [Streptomyces sp. SA3_actG]
gi|318080064|ref|ZP_07987396.1| endoribonuclease [Streptomyces sp. SA3_actF]
Length=154
Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/152 (71%), Positives = 123/152 (81%), Gaps = 2/152 (1%)
Query 1 MSA-KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNP 59
MSA +ARL +LG+TLP+VAAPLAAY PAVR+G VYTAGQLP+ G L TGK+GA+V
Sbjct 1 MSAVEARLAELGLTLPEVAAPLAAYQPAVRSGVYVYTAGQLPMVEGTLPTTGKVGAEVTA 60
Query 60 EEGKTLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAE 118
EE K LARI ALNALAAV S+ DLD + RVVKV GFVASA F GQP V+NGAS+LL+E
Sbjct 61 EEAKALARISALNALAAVRSVAGDLDRIARVVKVTGFVASATDFTGQPGVVNGASELLSE 120
Query 119 VFGDSGAHARSAVGVSELPLDAPVEVELIVEV 150
V G+ G HARSAVGV+ LPLDAPVEVELIVE+
Sbjct 121 VLGEKGVHARSAVGVAVLPLDAPVEVELIVEL 152
>gi|290958574|ref|YP_003489756.1| endoribonuclease [Streptomyces scabiei 87.22]
gi|260648100|emb|CBG71208.1| putative endoribonuclease [Streptomyces scabiei 87.22]
Length=155
Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/152 (72%), Positives = 122/152 (81%), Gaps = 2/152 (1%)
Query 1 MSA-KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNP 59
MSA +ARL +LG+ LP+V PLAAY PAVR+G VYTAGQLP+ GKL TGK+GA+V P
Sbjct 1 MSAVEARLAELGLRLPEVVPPLAAYQPAVRSGVYVYTAGQLPMVDGKLPVTGKVGAEVTP 60
Query 60 EEGKTLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAE 118
EE K LAR CALNALAAV S+ DLD V RVVKVVGFVASA F GQP+V+NGAS+LL
Sbjct 61 EEAKELARTCALNALAAVKSVAGDLDRVARVVKVVGFVASASDFTGQPAVLNGASELLGA 120
Query 119 VFGDSGAHARSAVGVSELPLDAPVEVELIVEV 150
VFGD G HARSAVGV+ LPLDAPVEVEL VE+
Sbjct 121 VFGDKGVHARSAVGVAVLPLDAPVEVELQVEL 152
>gi|302559360|ref|ZP_07311702.1| endoribonuclease L-PSP family protein [Streptomyces griseoflavus
Tu4000]
gi|302476978|gb|EFL40071.1| endoribonuclease L-PSP family protein [Streptomyces griseoflavus
Tu4000]
Length=155
Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/152 (70%), Positives = 122/152 (81%), Gaps = 2/152 (1%)
Query 1 MSA-KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNP 59
MSA +A+L +LG+TLP+V PLAAY PAVR+G V+TAGQLP+ GKL TGK+GA+V P
Sbjct 1 MSAVEAKLAELGLTLPEVVPPLAAYQPAVRSGQYVFTAGQLPMVDGKLPLTGKVGAEVTP 60
Query 60 EEGKTLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAE 118
EE K LAR CALNALAAV S+ DLD V RVVKVVGFVASA F GQP V+NGAS+LL E
Sbjct 61 EEAKELARTCALNALAAVKSVAGDLDRVARVVKVVGFVASAADFTGQPGVLNGASELLGE 120
Query 119 VFGDSGAHARSAVGVSELPLDAPVEVELIVEV 150
V GD G HARSAVGV+ LPLDAPVEVE+ VE+
Sbjct 121 VLGDKGVHARSAVGVAVLPLDAPVEVEIQVEL 152
>gi|297193054|ref|ZP_06910452.1| translation initiation inhibitor [Streptomyces pristinaespiralis
ATCC 25486]
gi|197719815|gb|EDY63723.1| translation initiation inhibitor [Streptomyces pristinaespiralis
ATCC 25486]
Length=156
Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/147 (71%), Positives = 119/147 (81%), Gaps = 1/147 (0%)
Query 5 ARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGKT 64
ARL +LG+TLP+V PLAAY PAV +G VYTAGQLP+ GKL TGK+GA+V PEE K
Sbjct 7 ARLAELGLTLPEVVPPLAAYQPAVVSGPYVYTAGQLPMVEGKLAVTGKVGAEVTPEEAKE 66
Query 65 LARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGDS 123
LAR CALNALAAV S++ DLD + RVVKVVGFVASA F GQP+V+NGAS+LL EV GD
Sbjct 67 LARTCALNALAAVKSVIGDLDRIARVVKVVGFVASASDFTGQPAVLNGASELLGEVLGDK 126
Query 124 GAHARSAVGVSELPLDAPVEVELIVEV 150
G HARSAVGV+ LPLDAPVEVE+ VE+
Sbjct 127 GVHARSAVGVAVLPLDAPVEVEIQVEL 153
>gi|343926467|ref|ZP_08765972.1| hypothetical protein GOALK_060_01310 [Gordonia alkanivorans NBRC
16433]
gi|343763705|dbj|GAA12898.1| hypothetical protein GOALK_060_01310 [Gordonia alkanivorans NBRC
16433]
Length=157
Score = 194 bits (492), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/149 (69%), Positives = 121/149 (82%), Gaps = 4/149 (2%)
Query 6 RLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKL--GAD--VNPEE 61
RL +LG+ LP V P+A+Y PAVRTGNLVYT+GQLP+ G+L GK+ GA+ V P+E
Sbjct 8 RLAELGIALPDVVPPVASYTPAVRTGNLVYTSGQLPIVDGELSVHGKVHEGAEGVVRPDE 67
Query 62 GKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFG 121
AR+CALNALAAV +LV +D+V R+VKVVGFVASAPGF GQP VINGASD+L E+FG
Sbjct 68 ATDAARVCALNALAAVHALVGIDSVVRIVKVVGFVASAPGFTGQPKVINGASDVLGEIFG 127
Query 122 DSGAHARSAVGVSELPLDAPVEVELIVEV 150
D+G HARSAVGV+ELPL APVEVELIVEV
Sbjct 128 DAGVHARSAVGVAELPLGAPVEVELIVEV 156
>gi|289763856|ref|ZP_06523234.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289711362|gb|EFD75378.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
Length=125
Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 100/101 (99%), Positives = 100/101 (99%), Gaps = 0/101 (0%)
Query 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE
Sbjct 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
Query 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPG 101
EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASA G
Sbjct 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASATG 101
>gi|319949579|ref|ZP_08023624.1| endoribonuclease L-PSP [Dietzia cinnamea P4]
gi|319436755|gb|EFV91830.1| endoribonuclease L-PSP [Dietzia cinnamea P4]
Length=159
Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 96/136 (71%), Positives = 114/136 (84%), Gaps = 0/136 (0%)
Query 6 RLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGKTL 65
+L QLGV LP V P+A YVPAVR G VYT+GQLP+ G L TGK+GA+V+PE+ L
Sbjct 13 KLEQLGVELPTVVPPVANYVPAVRAGTFVYTSGQLPMVDGTLAATGKVGAEVDPEQAADL 72
Query 66 ARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGDSGA 125
AR CALNALAAVD+LV +DAV ++VKVVGFVASAPGF+GQP+V+NGASD+L E+FGD+G
Sbjct 73 ARTCALNALAAVDALVGIDAVVKIVKVVGFVASAPGFNGQPAVVNGASDVLGELFGDAGV 132
Query 126 HARSAVGVSELPLDAP 141
HARSAVGVSELPLDAP
Sbjct 133 HARSAVGVSELPLDAP 148
>gi|291438178|ref|ZP_06577568.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
14672]
gi|291341073|gb|EFE68029.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
14672]
Length=155
Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/152 (70%), Positives = 123/152 (81%), Gaps = 2/152 (1%)
Query 1 MSA-KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNP 59
MSA +A+L +LG++LP+V PLAAY PAVR+G VYTAGQLPL G L TGK+GA+V
Sbjct 1 MSAVEAKLAELGLSLPEVVPPLAAYQPAVRSGRYVYTAGQLPLVDGHLPVTGKVGAEVTA 60
Query 60 EEGKTLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAE 118
EE K LAR+CALNALAAV S+ DLD V RVVKVVGFVASAP F GQP+V+NGAS+LL E
Sbjct 61 EEAKELARVCALNALAAVKSVAGDLDRVARVVKVVGFVASAPDFTGQPAVLNGASELLGE 120
Query 119 VFGDSGAHARSAVGVSELPLDAPVEVELIVEV 150
V GD G HARSAVGV+ LPLDAPVEVE+ VE+
Sbjct 121 VLGDKGVHARSAVGVAVLPLDAPVEVEVQVEL 152
>gi|238061498|ref|ZP_04606207.1| endoribonuclease L-PSP [Micromonospora sp. ATCC 39149]
gi|237883309|gb|EEP72137.1| endoribonuclease L-PSP [Micromonospora sp. ATCC 39149]
Length=153
Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 98/147 (67%), Positives = 121/147 (83%), Gaps = 0/147 (0%)
Query 4 KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGK 63
A+L +LG+TLP+VA P+A YVPAV++G V+ +GQLP+ GKL+ TGK+GA V+ E+ K
Sbjct 6 HAKLAELGLTLPEVAPPVANYVPAVQSGQHVFVSGQLPMAEGKLLATGKVGAGVSAEQAK 65
Query 64 TLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGDS 123
LA+ CALNALAAVD+LV L+ + +VV+V GFVASAPGF GQP VINGASDL VFG++
Sbjct 66 DLAQRCALNALAAVDALVGLENLVKVVRVTGFVASAPGFTGQPGVINGASDLFGAVFGEA 125
Query 124 GAHARSAVGVSELPLDAPVEVELIVEV 150
G HARSAVGVSELPLDAPVE+EL VEV
Sbjct 126 GRHARSAVGVSELPLDAPVEIELTVEV 152
>gi|311897034|dbj|BAJ29442.1| putative YjgF/YER057c/UK114 family protein [Kitasatospora setae
KM-6054]
Length=154
Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/148 (69%), Positives = 121/148 (82%), Gaps = 1/148 (0%)
Query 4 KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGK 63
+ +L +LG+TLP+VA P+AAYVPA+R G V T+GQLP+ AGKL TGK+GA+V EE K
Sbjct 5 EQKLAELGLTLPEVAVPVAAYVPALRDGEHVLTSGQLPMVAGKLQLTGKVGAEVTAEEAK 64
Query 64 TLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGD 122
LA+ICALNALAA+ S+V DLD V +VVKVVGFVASAP F GQP V+NG S+LL +VFGD
Sbjct 65 ELAQICALNALAAIKSVVGDLDKVEQVVKVVGFVASAPDFTGQPGVVNGTSELLGKVFGD 124
Query 123 SGAHARSAVGVSELPLDAPVEVELIVEV 150
G HARSAVGV+ LPLDAPVEVEL+V V
Sbjct 125 KGVHARSAVGVAVLPLDAPVEVELMVRV 152
>gi|329939393|ref|ZP_08288729.1| endoribonuclease [Streptomyces griseoaurantiacus M045]
gi|329301622|gb|EGG45516.1| endoribonuclease [Streptomyces griseoaurantiacus M045]
Length=155
Score = 193 bits (491), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 107/152 (71%), Positives = 121/152 (80%), Gaps = 2/152 (1%)
Query 1 MSA-KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNP 59
MSA +ARL +LG+TLP+V PLAAY PAVR+G VYTAGQLPL GKL TGK+GA+V
Sbjct 1 MSAVEARLAELGLTLPEVVPPLAAYQPAVRSGMYVYTAGQLPLVDGKLPVTGKVGAEVTA 60
Query 60 EEGKTLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAE 118
EE K LAR CALNALAAV S+ DLD + RVVKVVGFVASA F GQP V+NGAS+LL E
Sbjct 61 EEAKELARTCALNALAAVKSVTGDLDRIARVVKVVGFVASAGDFTGQPGVVNGASELLGE 120
Query 119 VFGDSGAHARSAVGVSELPLDAPVEVELIVEV 150
V GD G HARSAVGV+ LPLDAPVEVE+ VE+
Sbjct 121 VLGDKGVHARSAVGVAVLPLDAPVEVEIQVEL 152
>gi|302553055|ref|ZP_07305397.1| translation initiation inhibitor [Streptomyces viridochromogenes
DSM 40736]
gi|302470673|gb|EFL33766.1| translation initiation inhibitor [Streptomyces viridochromogenes
DSM 40736]
Length=153
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/148 (69%), Positives = 119/148 (81%), Gaps = 1/148 (0%)
Query 4 KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGK 63
+A+L +LG+TLP V PLAAY PAV++G VYTAGQLP+ GKL TGK+GA+V PEE K
Sbjct 5 EAKLAELGLTLPDVVPPLAAYQPAVQSGPYVYTAGQLPMVEGKLPLTGKVGAEVTPEEAK 64
Query 64 TLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGD 122
LAR CALNALAAV S+ DLD + RVVKVVGFVASA F GQP+V+NGAS+LL EV GD
Sbjct 65 ELARTCALNALAAVKSVAGDLDRIARVVKVVGFVASASDFTGQPAVLNGASELLGEVLGD 124
Query 123 SGAHARSAVGVSELPLDAPVEVELIVEV 150
G HARSAVGV+ LPLDAPVEVE+ VE+
Sbjct 125 KGVHARSAVGVAVLPLDAPVEVEIQVEL 152
>gi|21221993|ref|NP_627772.1| hypothetical protein SCO3575 [Streptomyces coelicolor A3(2)]
gi|289770814|ref|ZP_06530192.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|5139629|emb|CAB45555.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
gi|289701013|gb|EFD68442.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length=155
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/152 (70%), Positives = 122/152 (81%), Gaps = 2/152 (1%)
Query 1 MSA-KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNP 59
MSA +A+L +LG+TLP+V PLAAY PAV++G VYT+GQLP+ GKL TGK+GA+V P
Sbjct 1 MSAVEAKLAELGLTLPEVVPPLAAYQPAVQSGPYVYTSGQLPMLGGKLPVTGKVGAEVTP 60
Query 60 EEGKTLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAE 118
+E K LAR CALNALAAV S+ DLD V RVVKVVGFVASA F GQP VINGAS+LL E
Sbjct 61 DEAKELARTCALNALAAVKSVAGDLDRVARVVKVVGFVASAADFTGQPGVINGASELLGE 120
Query 119 VFGDSGAHARSAVGVSELPLDAPVEVELIVEV 150
V GD G HARSAVGV+ LPLDAPVEVE+ VE+
Sbjct 121 VLGDKGVHARSAVGVAVLPLDAPVEVEIQVEL 152
>gi|296118070|ref|ZP_06836652.1| endoribonuclease L-PSP family protein [Corynebacterium ammoniagenes
DSM 20306]
gi|295968956|gb|EFG82199.1| endoribonuclease L-PSP family protein [Corynebacterium ammoniagenes
DSM 20306]
Length=152
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/149 (68%), Positives = 119/149 (80%), Gaps = 0/149 (0%)
Query 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
MS KARL +LG TLP VA PLA+YVPA GN V+T+GQLPL G L +GK+GA+V+ +
Sbjct 1 MSFKARLEELGYTLPAVAKPLASYVPATVVGNQVWTSGQLPLVDGALPASGKVGAEVSAD 60
Query 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF 120
+ + LAR LN LAA+D+ V LD VTRV+KVVGFV+SAP F GQP+VINGASD + EVF
Sbjct 61 KAQELARTSILNGLAAIDAEVGLDNVTRVIKVVGFVSSAPDFTGQPAVINGASDFIGEVF 120
Query 121 GDSGAHARSAVGVSELPLDAPVEVELIVE 149
GD+GAHARSAVGV+ LP DAPVEVELIVE
Sbjct 121 GDAGAHARSAVGVAVLPNDAPVEVELIVE 149
>gi|294630569|ref|ZP_06709129.1| endoribonuclease L-PSP family protein [Streptomyces sp. e14]
gi|292833902|gb|EFF92251.1| endoribonuclease L-PSP family protein [Streptomyces sp. e14]
Length=154
Score = 190 bits (483), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/152 (69%), Positives = 121/152 (80%), Gaps = 2/152 (1%)
Query 1 MSA-KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNP 59
MSA +A+L +LG+TLP+V PLAAY PAV++G VYTAGQLP+ GKL TGK+G +V P
Sbjct 1 MSAVEAKLAELGLTLPEVVPPLAAYQPAVQSGPYVYTAGQLPMVDGKLPVTGKVGLEVTP 60
Query 60 EEGKTLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAE 118
EE K LAR CALNALAAV S+ DLD + RVVKVVGFVASA F GQP V+NGAS+LL E
Sbjct 61 EEAKDLARTCALNALAAVKSVAGDLDRIARVVKVVGFVASAADFTGQPGVVNGASELLGE 120
Query 119 VFGDSGAHARSAVGVSELPLDAPVEVELIVEV 150
V GD G HARSAVGV+ LPLDAPVEVE+ VE+
Sbjct 121 VLGDKGVHARSAVGVAVLPLDAPVEVEIQVEL 152
>gi|145221961|ref|YP_001132639.1| endoribonuclease L-PSP [Mycobacterium gilvum PYR-GCK]
gi|315446303|ref|YP_004079182.1| translation initiation inhibitor, yjgF family [Mycobacterium
sp. Spyr1]
gi|145214447|gb|ABP43851.1| Endoribonuclease L-PSP [Mycobacterium gilvum PYR-GCK]
gi|315264606|gb|ADU01348.1| putative translation initiation inhibitor, yjgF family [Mycobacterium
sp. Spyr1]
Length=153
Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/147 (70%), Positives = 123/147 (84%), Gaps = 0/147 (0%)
Query 4 KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGK 63
+ARL +LG+ LP V APLAAYVPAVRTGNLVYT+GQLP+ G+L+ GK+GA+V+ E+ K
Sbjct 6 QARLDELGIELPDVVAPLAAYVPAVRTGNLVYTSGQLPIRDGELLAAGKVGAEVSAEDAK 65
Query 64 TLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGDS 123
LAR CALNALAAV +L +++V +VVKVVGFVASAPGF GQP VINGAS+L E+FG++
Sbjct 66 PLARQCALNALAAVHALTGIESVVKVVKVVGFVASAPGFDGQPGVINGASELFGEIFGEA 125
Query 124 GAHARSAVGVSELPLDAPVEVELIVEV 150
GAHARSAVGVSELP + PVEVE I EV
Sbjct 126 GAHARSAVGVSELPRNTPVEVEAIFEV 152
>gi|269129038|ref|YP_003302408.1| endoribonuclease L-PSP [Thermomonospora curvata DSM 43183]
gi|268313996|gb|ACZ00371.1| Endoribonuclease L-PSP [Thermomonospora curvata DSM 43183]
Length=154
Score = 190 bits (482), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 97/148 (66%), Positives = 121/148 (82%), Gaps = 1/148 (0%)
Query 4 KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGK 63
+ R+ +LG+ LP+V APLA+YVPAVRTG+LVYT+GQ+PL G+ TGK+GA+V+ EE
Sbjct 5 EERIAELGLELPEVVAPLASYVPAVRTGSLVYTSGQVPLVKGEPTATGKVGAEVSVEEAV 64
Query 64 TLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGD 122
AR+CALNA+AA+ + V +L V R+VKVVGFVASAP FHGQP V+NGASDLL E+FG+
Sbjct 65 HAARVCALNAVAALKAEVGELSRVKRIVKVVGFVASAPDFHGQPQVVNGASDLLGEIFGE 124
Query 123 SGAHARSAVGVSELPLDAPVEVELIVEV 150
+G HARSAVGV+ LPLD PVEVELI EV
Sbjct 125 AGRHARSAVGVAVLPLDVPVEVELIAEV 152
>gi|29831131|ref|NP_825765.1| hypothetical protein SAV_4588 [Streptomyces avermitilis MA-4680]
gi|29608245|dbj|BAC72300.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length=156
Score = 189 bits (481), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 101/148 (69%), Positives = 118/148 (80%), Gaps = 1/148 (0%)
Query 4 KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGK 63
+A+L +LG+TLP V PLAAY PAV++G VYTAGQLP+ GKL TGK+GA+V PEE K
Sbjct 6 EAKLAELGLTLPAVVPPLAAYQPAVQSGVYVYTAGQLPMVEGKLPVTGKVGAEVTPEEAK 65
Query 64 TLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGD 122
LAR CALNALAAV S+ DLD + RVVKVVGFVASA F GQP+V+NGAS+LL V GD
Sbjct 66 DLARTCALNALAAVKSVTGDLDRIARVVKVVGFVASASDFTGQPAVLNGASELLGAVLGD 125
Query 123 SGAHARSAVGVSELPLDAPVEVELIVEV 150
G HARSAVGV+ LPLDAPVEVE+ VE+
Sbjct 126 KGVHARSAVGVTVLPLDAPVEVEIQVEL 153
>gi|334338143|ref|YP_004543295.1| Endoribonuclease L-PSP [Isoptericola variabilis 225]
gi|334108511|gb|AEG45401.1| Endoribonuclease L-PSP [Isoptericola variabilis 225]
Length=156
Score = 189 bits (481), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 104/154 (68%), Positives = 119/154 (78%), Gaps = 4/154 (2%)
Query 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGAD---V 57
MS ARL +LG+TLP VAAP+A+YVPAVR+G+ VYTAGQLP G L TGK+G V
Sbjct 1 MSVDARLAELGITLPDVAAPVASYVPAVRSGSSVYTAGQLPFVGGSLPATGKVGEGDGLV 60
Query 58 NPEEGKTLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLL 116
+PE LAR CALNALAAV S+V LD V RVVKV GFVAS P F GQP V+NGAS +L
Sbjct 61 SPEVAADLARTCALNALAAVRSVVGSLDDVARVVKVTGFVASDPSFTGQPGVVNGASTVL 120
Query 117 AEVFGDSGAHARSAVGVSELPLDAPVEVELIVEV 150
E+FGD+G HARSAVGV+ LPLDAPVEVELIVE+
Sbjct 121 GEIFGDAGVHARSAVGVAVLPLDAPVEVELIVEL 154
>gi|254391708|ref|ZP_05006905.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294813398|ref|ZP_06772041.1| translation initiation inhibitor [Streptomyces clavuligerus ATCC
27064]
gi|326441889|ref|ZP_08216623.1| hypothetical protein SclaA2_12534 [Streptomyces clavuligerus
ATCC 27064]
gi|197705392|gb|EDY51204.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294325997|gb|EFG07640.1| translation initiation inhibitor [Streptomyces clavuligerus ATCC
27064]
Length=156
Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/150 (68%), Positives = 118/150 (79%), Gaps = 1/150 (0%)
Query 2 SAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEE 61
+ +ARL +LG+TLP V PLAAY PAV +G VYTAGQLP+ GKL TGK+GA+V EE
Sbjct 4 TVEARLAELGLTLPDVVPPLAAYQPAVASGPYVYTAGQLPMVDGKLPVTGKVGAEVTAEE 63
Query 62 GKTLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF 120
K LAR+CALNALAAV S+ DLD + RVVKVVGFVASA F GQP V+NGAS+LL EV
Sbjct 64 AKELARVCALNALAAVKSVAGDLDRIARVVKVVGFVASASDFTGQPGVLNGASELLGEVL 123
Query 121 GDSGAHARSAVGVSELPLDAPVEVELIVEV 150
GD G HARSAVGV+ LPLDAPVEVE+ VE+
Sbjct 124 GDKGVHARSAVGVAVLPLDAPVEVEIQVEL 153
>gi|302535310|ref|ZP_07287652.1| translation initiation inhibitor [Streptomyces sp. C]
gi|302444205|gb|EFL16021.1| translation initiation inhibitor [Streptomyces sp. C]
Length=156
Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/148 (67%), Positives = 118/148 (80%), Gaps = 1/148 (0%)
Query 4 KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGK 63
+AR+ +LG+TLP+V PLA Y PAVR+G VYTAGQLP+ GKL TGK+GA+V+ E+ K
Sbjct 6 EARIAELGLTLPEVVPPLATYQPAVRSGAYVYTAGQLPMVQGKLPVTGKVGAEVSAEQAK 65
Query 64 TLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGD 122
LA CALNALAAV S+V DLD + RVVKVVGFVASAP F QP V+NGAS+LL EV GD
Sbjct 66 ELAATCALNALAAVKSVVGDLDRIARVVKVVGFVASAPDFTAQPGVLNGASELLGEVLGD 125
Query 123 SGAHARSAVGVSELPLDAPVEVELIVEV 150
G HARSAVGV+ LPLDAPVE+E+ VE+
Sbjct 126 KGVHARSAVGVAVLPLDAPVEIEIQVEL 153
>gi|120406384|ref|YP_956213.1| endoribonuclease L-PSP [Mycobacterium vanbaalenii PYR-1]
gi|119959202|gb|ABM16207.1| Endoribonuclease L-PSP [Mycobacterium vanbaalenii PYR-1]
Length=152
Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/136 (75%), Positives = 118/136 (87%), Gaps = 0/136 (0%)
Query 6 RLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGKTL 65
RL +LG+ LP+V APLAAYVPAVRTGNLVYTAGQLP+ G+L TGK+GA+V+ E+ K L
Sbjct 7 RLDELGIALPEVVAPLAAYVPAVRTGNLVYTAGQLPISNGELAATGKVGAEVSAEDAKHL 66
Query 66 ARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGDSGA 125
AR CALNALAAVD+LV +D+V +VVKVVGFVASAPGF GQP VINGAS+L EVFG++GA
Sbjct 67 ARRCALNALAAVDALVGIDSVVKVVKVVGFVASAPGFDGQPGVINGASELFGEVFGEAGA 126
Query 126 HARSAVGVSELPLDAP 141
HARSAVGVSELP +AP
Sbjct 127 HARSAVGVSELPRNAP 142
>gi|256374396|ref|YP_003098056.1| endoribonuclease L-PSP [Actinosynnema mirum DSM 43827]
gi|255918699|gb|ACU34210.1| Endoribonuclease L-PSP [Actinosynnema mirum DSM 43827]
Length=152
Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/150 (72%), Positives = 127/150 (85%), Gaps = 0/150 (0%)
Query 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
M+ RL +LGV LP+VAAP+AAYVPAVRTG+LV+T+GQLP G L TGK+GA+V+PE
Sbjct 1 MTWTDRLAELGVELPEVAAPVAAYVPAVRTGSLVFTSGQLPFVGGALAATGKVGAEVSPE 60
Query 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF 120
E K AR CALNALAAV +LV +D+V RVVKVVGFVASA GF GQP+V+NGAS+ L EVF
Sbjct 61 EAKAHARTCALNALAAVHALVGVDSVARVVKVVGFVASADGFTGQPAVVNGASEFLGEVF 120
Query 121 GDSGAHARSAVGVSELPLDAPVEVELIVEV 150
GD+GAHARSAVGV+ELPL APVEVEL+VE+
Sbjct 121 GDAGAHARSAVGVAELPLGAPVEVELVVEI 150
>gi|306835032|ref|ZP_07468078.1| endoribonuclease L-PSP family protein [Corynebacterium accolens
ATCC 49726]
gi|304569090|gb|EFM44609.1| endoribonuclease L-PSP family protein [Corynebacterium accolens
ATCC 49726]
Length=152
Score = 187 bits (476), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 118/150 (79%), Gaps = 0/150 (0%)
Query 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
MS ARL +LGV LP VA PLA+YVPA+R GN V+T+GQLPL G L TGK+GA+V E
Sbjct 1 MSFSARLKELGVELPGVAKPLASYVPALRVGNQVWTSGQLPLVDGSLPVTGKVGAEVTTE 60
Query 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF 120
+ + AR LNALAAVD+ + LD ++RV+K+VGFVAS PG+ QP+V+NGASD + EVF
Sbjct 61 QAQEQARTAVLNALAAVDAEIGLDNISRVIKIVGFVASDPGYEDQPAVVNGASDFIGEVF 120
Query 121 GDSGAHARSAVGVSELPLDAPVEVELIVEV 150
G++G HARSAVGV+ LP +APVE+ELIVE+
Sbjct 121 GEAGTHARSAVGVAALPKNAPVEIELIVEI 150
>gi|182437129|ref|YP_001824848.1| hypothetical protein SGR_3336 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326777739|ref|ZP_08237004.1| Endoribonuclease L-PSP [Streptomyces cf. griseus XylebKG-1]
gi|178465645|dbj|BAG20165.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326658072|gb|EGE42918.1| Endoribonuclease L-PSP [Streptomyces griseus XylebKG-1]
Length=156
Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/148 (67%), Positives = 118/148 (80%), Gaps = 1/148 (0%)
Query 4 KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPEEGK 63
++RL +LG+TLP V PLA+Y PAVR+G VYT+GQLP+ GKL TGK+GA+V P+E K
Sbjct 6 ESRLAELGLTLPAVVPPLASYQPAVRSGVYVYTSGQLPMVDGKLAVTGKVGAEVTPDEAK 65
Query 64 TLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVFGD 122
LA+ CALNALAAV S+ DLD + RVVKVVGFVASA F GQP+VINGAS+LL V GD
Sbjct 66 ELAKTCALNALAAVKSVAGDLDRIERVVKVVGFVASASDFTGQPAVINGASELLGAVLGD 125
Query 123 SGAHARSAVGVSELPLDAPVEVELIVEV 150
G HARSAVGV+ LPLDAPVEVE+ VE+
Sbjct 126 KGVHARSAVGVAVLPLDAPVEVEVQVEL 153
>gi|254385582|ref|ZP_05000907.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194344452|gb|EDX25418.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length=156
Score = 187 bits (475), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/152 (65%), Positives = 123/152 (81%), Gaps = 2/152 (1%)
Query 1 MSA-KARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNP 59
MSA +A+L +LG+TLP+V PLAAY PAVR+G+ V+TAGQLP+ G + TGK+GA+V+
Sbjct 1 MSAVEAKLAELGLTLPEVVPPLAAYQPAVRSGSYVFTAGQLPMVKGSMPITGKVGAEVSA 60
Query 60 EEGKTLARICALNALAAVDSLV-DLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAE 118
E+ K LA +CALNALAAV S++ DLD + RVVKVVGF+ASAP F QP V+NGAS+LL E
Sbjct 61 EQAKELAAVCALNALAAVKSVIGDLDKIARVVKVVGFIASAPDFTAQPGVLNGASELLGE 120
Query 119 VFGDSGAHARSAVGVSELPLDAPVEVELIVEV 150
V G+ G HARSAVGV+ LPLDAPVEVE+ VE+
Sbjct 121 VLGEKGVHARSAVGVAVLPLDAPVEVEIQVEL 152
>gi|227502461|ref|ZP_03932510.1| possible endoribonuclease L-PSP [Corynebacterium accolens ATCC
49725]
gi|227076830|gb|EEI14793.1| possible endoribonuclease L-PSP [Corynebacterium accolens ATCC
49725]
Length=152
Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 118/150 (79%), Gaps = 0/150 (0%)
Query 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
MS ARL +LGV LP VA PLA+YVPA+R GN V+T+GQLPL G L TGK+GA+V E
Sbjct 1 MSFSARLKELGVELPGVAKPLASYVPALRVGNQVWTSGQLPLVEGSLPVTGKVGAEVTTE 60
Query 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF 120
+ + AR LNALAAVD+ + LD ++RV+K+VGFVAS PG+ QP+V+NGASD + EVF
Sbjct 61 QAQEQARTAVLNALAAVDAEIGLDNISRVIKLVGFVASDPGYEDQPAVVNGASDFIGEVF 120
Query 121 GDSGAHARSAVGVSELPLDAPVEVELIVEV 150
G++G HARSAVGV+ LP +APVE+ELIVE+
Sbjct 121 GEAGTHARSAVGVAALPKNAPVEIELIVEI 150
>gi|227505669|ref|ZP_03935718.1| possible endoribonuclease L-PSP [Corynebacterium striatum ATCC
6940]
gi|227197743|gb|EEI77791.1| possible endoribonuclease L-PSP [Corynebacterium striatum ATCC
6940]
Length=152
Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/150 (64%), Positives = 121/150 (81%), Gaps = 0/150 (0%)
Query 1 MSAKARLGQLGVTLPQVAAPLAAYVPAVRTGNLVYTAGQLPLEAGKLVRTGKLGADVNPE 60
MS +RL +LG +LP+VA PLA+YVPA+R G+ V+T+GQLP+ G L TGK+GADV+ E
Sbjct 1 MSHLSRLAKLGYSLPEVAKPLASYVPAIRVGDQVWTSGQLPVVEGVLPATGKVGADVSIE 60
Query 61 EGKTLARICALNALAAVDSLVDLDAVTRVVKVVGFVASAPGFHGQPSVINGASDLLAEVF 120
+ + AR ALNALAA+DSLV LD+V+RVVKVVGFV+SAP F Q VINGASD + EVF
Sbjct 61 DAQGYARTAALNALAAIDSLVGLDSVSRVVKVVGFVSSAPDFVEQAEVINGASDFIREVF 120
Query 121 GDSGAHARSAVGVSELPLDAPVEVELIVEV 150
G++G HARSAVGV+ LP D+PVEVE+IVE+
Sbjct 121 GEAGTHARSAVGVAVLPKDSPVEVEVIVEL 150
Lambda K H
0.316 0.134 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128896424032
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40