BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3681c
Length=118
Score E
Sequences producing significant alignments: (Bits) Value
gi|15843299|ref|NP_338336.1| WhiB-related protein [Mycobacterium... 241 2e-62
gi|339633673|ref|YP_004725315.1| transcriptional regulator [Myco... 238 2e-61
gi|289755807|ref|ZP_06515185.1| LOW QUALITY PROTEIN: conserved h... 224 4e-57
gi|240172243|ref|ZP_04750902.1| putative transcriptional regulat... 222 2e-56
gi|296166739|ref|ZP_06849163.1| WhiB4 family protein [Mycobacter... 213 9e-54
gi|254820830|ref|ZP_05225831.1| WhiB4 [Mycobacterium intracellul... 211 4e-53
gi|41406491|ref|NP_959327.1| WhiB4 [Mycobacterium avium subsp. p... 211 4e-53
gi|342861981|ref|ZP_08718625.1| WhiB4 [Mycobacterium colombiense... 209 8e-53
gi|308232529|ref|ZP_07416374.2| transcriptional regulator whib-l... 206 7e-52
gi|183985140|ref|YP_001853431.1| transcriptional regulatory prot... 204 3e-51
gi|120406388|ref|YP_956217.1| transcription factor WhiB [Mycobac... 173 8e-42
gi|126437775|ref|YP_001073466.1| transcription factor WhiB [Myco... 166 8e-40
gi|108801787|ref|YP_641984.1| transcription factor WhiB [Mycobac... 166 1e-39
gi|118467627|ref|YP_890419.1| transcription factor WhiB [Mycobac... 163 7e-39
gi|145221958|ref|YP_001132636.1| transcription factor WhiB [Myco... 162 2e-38
gi|315446307|ref|YP_004079186.1| transcription factor WhiB [Myco... 159 1e-37
gi|296164473|ref|ZP_06847045.1| WhiB4 family protein [Mycobacter... 157 6e-37
gi|333917932|ref|YP_004491513.1| WhiB family regulatory protein ... 156 9e-37
gi|333992600|ref|YP_004525214.1| transcriptional regulator [Myco... 156 1e-36
gi|169627513|ref|YP_001701162.1| putative transcriptional regula... 154 4e-36
gi|111021292|ref|YP_704264.1| WhiB family transcriptional regula... 152 1e-35
gi|15828239|ref|NP_302502.1| hypothetical protein ML2307 [Mycoba... 152 2e-35
gi|54022304|ref|YP_116546.1| putative transcriptional regulator ... 151 3e-35
gi|226303953|ref|YP_002763911.1| WhiB family regulatory protein ... 149 1e-34
gi|262200510|ref|YP_003271718.1| transcription factor WhiB [Gord... 149 2e-34
gi|296141606|ref|YP_003648849.1| transcription factor WhiB [Tsuk... 149 2e-34
gi|229492181|ref|ZP_04385990.1| transcription factor WhiB [Rhodo... 149 2e-34
gi|240171486|ref|ZP_04750145.1| transcription factor WhiB [Mycob... 145 2e-33
gi|343926463|ref|ZP_08765968.1| putative WhiB family regulatory ... 144 4e-33
gi|319949575|ref|ZP_08023620.1| WhiB family transcriptional regu... 144 5e-33
gi|68537071|ref|YP_251776.1| WhiB family transcriptional regulat... 139 9e-32
gi|260579415|ref|ZP_05847297.1| transcriptional regulator (WhiB ... 139 1e-31
gi|227505984|ref|ZP_03936033.1| WhiB family transcriptional regu... 139 1e-31
gi|336326583|ref|YP_004606549.1| WhiB family transcription regul... 139 1e-31
gi|120402741|ref|YP_952570.1| transcription factor WhiB [Mycobac... 139 1e-31
gi|334564414|ref|ZP_08517405.1| WhiB family transcriptional regu... 138 2e-31
gi|340795435|ref|YP_004760898.1| putative WhiB transcription reg... 136 1e-30
gi|227502459|ref|ZP_03932508.1| WhiB family transcriptional regu... 134 3e-30
gi|213966279|ref|ZP_03394462.1| transcription factor WhiB [Coryn... 134 4e-30
gi|227832032|ref|YP_002833739.1| WhiB transcriptional regulator ... 134 5e-30
gi|237786555|ref|YP_002907260.1| putative WhiB family transcript... 133 7e-30
gi|255324176|ref|ZP_05365298.1| transcription factor WhiB [Coryn... 131 3e-29
gi|118466521|ref|YP_879729.1| transcription factor WhiB [Mycobac... 130 6e-29
gi|305680542|ref|ZP_07403350.1| transcription factor WhiB [Coryn... 130 7e-29
gi|300779997|ref|ZP_07089853.1| transcription regulator WhiB [Co... 126 1e-27
gi|227549676|ref|ZP_03979725.1| WhiB family transcriptional regu... 124 5e-27
gi|225022062|ref|ZP_03711254.1| hypothetical protein CORMATOL_02... 123 1e-26
gi|226362406|ref|YP_002780184.1| WhiB family regulatory protein ... 122 2e-26
gi|38232920|ref|NP_938687.1| putative regulatory protein [Coryne... 122 2e-26
gi|111020352|ref|YP_703324.1| WhiB family transcriptional regula... 122 3e-26
>gi|15843299|ref|NP_338336.1| WhiB-related protein [Mycobacterium tuberculosis CDC1551]
gi|31794852|ref|NP_857345.1| putative transcriptional regulatory protein whiB-like whiB4 [Mycobacterium
bovis AF2122/97]
gi|57117144|ref|NP_218198.2| transcriptional regulatory protein WHIB-like WHIB4 [Mycobacterium
tuberculosis H37Rv]
57 more sequence titles
Length=118
Score = 241 bits (615), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/118 (99%), Positives = 118/118 (100%), Gaps = 0/118 (0%)
Query 1 VSGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
+SGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR
Sbjct 1 MSGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
Query 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEKRKRRTGTAG 118
HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEKRKRRTGTAG
Sbjct 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEKRKRRTGTAG 118
>gi|339633673|ref|YP_004725315.1| transcriptional regulator [Mycobacterium africanum GM041182]
gi|339333029|emb|CCC28758.1| putative transcriptional regulatory protein WHIB-like WHIB4 [Mycobacterium
africanum GM041182]
Length=118
Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/118 (99%), Positives = 117/118 (99%), Gaps = 0/118 (0%)
Query 1 VSGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
+SGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR
Sbjct 1 MSGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
Query 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEKRKRRTGTAG 118
HCPVMQECAADALDNKVEFGVWGGMTERQR ALLKQHPEVVSWSDYLEKRKRRTGTAG
Sbjct 61 HCPVMQECAADALDNKVEFGVWGGMTERQRGALLKQHPEVVSWSDYLEKRKRRTGTAG 118
>gi|289755807|ref|ZP_06515185.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis EAS054]
gi|289696394|gb|EFD63823.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis EAS054]
Length=119
Score = 224 bits (571), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 108/109 (99%), Positives = 109/109 (100%), Gaps = 0/109 (0%)
Query 1 VSGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
+SGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR
Sbjct 1 MSGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
Query 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEK 109
HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEK
Sbjct 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEK 109
>gi|240172243|ref|ZP_04750902.1| putative transcriptional regulatory protein whiB-like [Mycobacterium
kansasii ATCC 12478]
Length=116
Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/114 (93%), Positives = 111/114 (98%), Gaps = 0/114 (0%)
Query 1 VSGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
+SGTRPAARRTNLT+AQN++RS DAEERI WVSKALCR TDPDELFVRGAAQRKAAVICR
Sbjct 1 MSGTRPAARRTNLTSAQNLLRSADAEERINWVSKALCRATDPDELFVRGAAQRKAAVICR 60
Query 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEKRKRRT 114
HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYL+KRKRR+
Sbjct 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLDKRKRRS 114
>gi|296166739|ref|ZP_06849163.1| WhiB4 family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295897909|gb|EFG77491.1| WhiB4 family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=116
Score = 213 bits (541), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 100/114 (88%), Positives = 109/114 (96%), Gaps = 0/114 (0%)
Query 1 VSGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
+SGTRPAARRTN+ AAQ V+RSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR
Sbjct 1 MSGTRPAARRTNIAAAQGVLRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
Query 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEKRKRRT 114
HCPVMQEC ADALD+KVEFGVWGGMTERQRRALLKQHPEVVSW+D+ +KR+ R+
Sbjct 61 HCPVMQECGADALDHKVEFGVWGGMTERQRRALLKQHPEVVSWADFFDKRRTRS 114
>gi|254820830|ref|ZP_05225831.1| WhiB4 [Mycobacterium intracellulare ATCC 13950]
Length=116
Score = 211 bits (536), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 100/115 (87%), Positives = 107/115 (94%), Gaps = 0/115 (0%)
Query 1 VSGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
+S RPAARRTN+ AAQ V+RSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR
Sbjct 1 MSPIRPAARRTNIAAAQGVLRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
Query 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEKRKRRTG 115
HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSW+D+ +K + RT
Sbjct 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWADFFDKSRSRTA 115
>gi|41406491|ref|NP_959327.1| WhiB4 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|254773452|ref|ZP_05214968.1| WhiB4 [Mycobacterium avium subsp. avium ATCC 25291]
gi|41394840|gb|AAS02710.1| WhiB4 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=116
Score = 211 bits (536), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 99/114 (87%), Positives = 108/114 (95%), Gaps = 0/114 (0%)
Query 1 VSGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
+S TRPAARRTN+ AAQ V+RSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR
Sbjct 1 MSPTRPAARRTNIAAAQGVLRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
Query 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEKRKRRT 114
HCPVMQEC ADALDN+VEFGVWGGMTERQRRALLKQHPEVVSW+D+ +KR+ R+
Sbjct 61 HCPVMQECGADALDNRVEFGVWGGMTERQRRALLKQHPEVVSWADFFDKRRNRS 114
>gi|342861981|ref|ZP_08718625.1| WhiB4 [Mycobacterium colombiense CECT 3035]
gi|342130521|gb|EGT83830.1| WhiB4 [Mycobacterium colombiense CECT 3035]
Length=116
Score = 209 bits (533), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 99/114 (87%), Positives = 107/114 (94%), Gaps = 0/114 (0%)
Query 1 VSGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
+S RPAARRTN+ AAQ V+RSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR
Sbjct 1 MSPIRPAARRTNIAAAQGVLRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
Query 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEKRKRRT 114
HCPVMQEC ADALDNKVEFGVWGGMTERQRRALLKQHPEVVSW+D+ +KR+ R+
Sbjct 61 HCPVMQECGADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWADFFDKRRTRS 114
>gi|308232529|ref|ZP_07416374.2| transcriptional regulator whib-like whiB4 [Mycobacterium tuberculosis
SUMu001]
gi|308371414|ref|ZP_07424914.2| transcriptional regulator whib-like whiB4 [Mycobacterium tuberculosis
SUMu003]
gi|308372705|ref|ZP_07429580.2| transcriptional regulator whib-like whiB4 [Mycobacterium tuberculosis
SUMu005]
14 more sequence titles
Length=100
Score = 206 bits (525), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 99/100 (99%), Positives = 100/100 (100%), Gaps = 0/100 (0%)
Query 19 VVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVE 78
+VRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVE
Sbjct 1 MVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVE 60
Query 79 FGVWGGMTERQRRALLKQHPEVVSWSDYLEKRKRRTGTAG 118
FGVWGGMTERQRRALLKQHPEVVSWSDYLEKRKRRTGTAG
Sbjct 61 FGVWGGMTERQRRALLKQHPEVVSWSDYLEKRKRRTGTAG 100
>gi|183985140|ref|YP_001853431.1| transcriptional regulatory protein Whib-like WhiB4 [Mycobacterium
marinum M]
gi|183178466|gb|ACC43576.1| transcriptional regulatory protein Whib-like WhiB4 [Mycobacterium
marinum M]
Length=116
Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 96/114 (85%), Positives = 103/114 (91%), Gaps = 0/114 (0%)
Query 1 VSGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
+SG RP R NLT+AQN++ + +AEERI WVSKALCR TDPDELFVRGAAQRKAAVICR
Sbjct 1 MSGIRPVDGRANLTSAQNLLSTGEAEERINWVSKALCRATDPDELFVRGAAQRKAAVICR 60
Query 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEKRKRRT 114
HCPVMQEC ADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDY EKRKRR+
Sbjct 61 HCPVMQECGADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYFEKRKRRS 114
>gi|120406388|ref|YP_956217.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1]
gi|119959206|gb|ABM16211.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1]
Length=118
Score = 173 bits (438), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 83/117 (71%), Positives = 98/117 (84%), Gaps = 2/117 (1%)
Query 1 VSGTRPAARRTNLTAA-QNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVIC 59
+S +PAAR+T + + Q+++ +AE RIAWVS+A CR TDPDELFVRGAAQRKAAVIC
Sbjct 1 MSSIKPAARKTTVDPSDQSILHGAEAEARIAWVSQARCRQTDPDELFVRGAAQRKAAVIC 60
Query 60 RHCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYL-EKRKRRTG 115
RHCPV+ EC ADALDN+VEFGVWGGMTERQRRALLKQHPEVVSW+D+ +RK RT
Sbjct 61 RHCPVIAECGADALDNRVEFGVWGGMTERQRRALLKQHPEVVSWADFFAAQRKHRTA 117
>gi|126437775|ref|YP_001073466.1| transcription factor WhiB [Mycobacterium sp. JLS]
gi|126237575|gb|ABO00976.1| transcription factor WhiB [Mycobacterium sp. JLS]
Length=118
Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 81/118 (69%), Positives = 94/118 (80%), Gaps = 2/118 (1%)
Query 1 VSGTRPAARRTNLTAAQNV-VRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVIC 59
+S RPA R+T T + V+ +AE RIAWVS+A CR DPDELFVRGAAQRKAAVIC
Sbjct 1 MSSIRPAVRKTTTTVPSSPPVQGAEAEARIAWVSQARCRQADPDELFVRGAAQRKAAVIC 60
Query 60 RHCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLE-KRKRRTGT 116
RHCPV+ EC ADALDN+VEFGVWGGMTERQRRALLKQHPEVVSW+++ +RK R+
Sbjct 61 RHCPVILECGADALDNRVEFGVWGGMTERQRRALLKQHPEVVSWAEFFSAQRKHRSAV 118
>gi|108801787|ref|YP_641984.1| transcription factor WhiB [Mycobacterium sp. MCS]
gi|119870938|ref|YP_940890.1| transcription factor WhiB [Mycobacterium sp. KMS]
gi|108772206|gb|ABG10928.1| transcription factor WhiB [Mycobacterium sp. MCS]
gi|119697027|gb|ABL94100.1| transcription factor WhiB [Mycobacterium sp. KMS]
Length=118
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/118 (69%), Positives = 94/118 (80%), Gaps = 2/118 (1%)
Query 1 VSGTRPAARRTNLTAAQNV-VRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVIC 59
+S RPA R+T T + V+ +AE RIAWVS+A CR DPDELFVRGAAQRKAAVIC
Sbjct 1 MSSIRPAVRKTMTTVPSSPPVQGAEAEARIAWVSQARCRQADPDELFVRGAAQRKAAVIC 60
Query 60 RHCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLE-KRKRRTGT 116
RHCPV+ EC ADALDN+VEFGVWGGMTERQRRALLKQHPEVVSW+++ +RK R+
Sbjct 61 RHCPVILECGADALDNRVEFGVWGGMTERQRRALLKQHPEVVSWAEFFSAQRKHRSAV 118
>gi|118467627|ref|YP_890419.1| transcription factor WhiB [Mycobacterium smegmatis str. MC2 155]
gi|118168914|gb|ABK69810.1| Transcription factor WhiB [Mycobacterium smegmatis str. MC2 155]
Length=118
Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 79/117 (68%), Positives = 92/117 (79%), Gaps = 2/117 (1%)
Query 1 VSGTRPAARR-TNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVIC 59
+S T AR+ + L+ N + D+E RIAWVS+A CR DPDELFVRGAAQRKAAVIC
Sbjct 1 MSATHTVARKASTLSTTTNTAQHRDSEARIAWVSQARCRQADPDELFVRGAAQRKAAVIC 60
Query 60 RHCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYL-EKRKRRTG 115
RHCPV+ EC ADALDN+VEFGVWGGMTERQRRALLKQHPEV SW+D+ +RK R+
Sbjct 61 RHCPVILECGADALDNRVEFGVWGGMTERQRRALLKQHPEVSSWADFFAAQRKHRSA 117
>gi|145221958|ref|YP_001132636.1| transcription factor WhiB [Mycobacterium gilvum PYR-GCK]
gi|145214444|gb|ABP43848.1| transcription factor WhiB [Mycobacterium gilvum PYR-GCK]
Length=118
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/116 (74%), Positives = 96/116 (83%), Gaps = 2/116 (1%)
Query 1 VSGTRPAARRTNLTAAQNVV-RSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVIC 59
+S +PAAR T +TA V + +AE RIAWVS+A CR TDPDELFVRGAAQRKAAVIC
Sbjct 1 MSSIKPAARPTTVTAPTPPVVQGKEAEARIAWVSQARCRQTDPDELFVRGAAQRKAAVIC 60
Query 60 RHCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYL-EKRKRRT 114
RHCPV+ EC ADALDN+VEFGVWGGMTERQRRALLKQHPEVVSW+D+ +RK RT
Sbjct 61 RHCPVIAECGADALDNRVEFGVWGGMTERQRRALLKQHPEVVSWADFFAAQRKHRT 116
>gi|315446307|ref|YP_004079186.1| transcription factor WhiB [Mycobacterium sp. Spyr1]
gi|315264610|gb|ADU01352.1| Transcription factor WhiB [Mycobacterium sp. Spyr1]
Length=118
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/108 (75%), Positives = 91/108 (85%), Gaps = 1/108 (0%)
Query 1 VSGTRPAARRTNLTAAQNVV-RSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVIC 59
+S +PAAR T +TA V + +AE RIAWVS+A CR TDPDELFVRGAAQRKAAVIC
Sbjct 1 MSSIKPAARPTTVTAPTPPVVQGKEAEARIAWVSQARCRQTDPDELFVRGAAQRKAAVIC 60
Query 60 RHCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYL 107
RHCPV+ EC ADALDN+VEFGVWGGMTERQRRALLKQHPEVVSW+D+
Sbjct 61 RHCPVIAECGADALDNRVEFGVWGGMTERQRRALLKQHPEVVSWADFF 108
>gi|296164473|ref|ZP_06847045.1| WhiB4 family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295900171|gb|EFG79605.1| WhiB4 family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=118
Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 77/114 (68%), Positives = 91/114 (80%), Gaps = 0/114 (0%)
Query 4 TRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCP 63
TR AAR +A+N +RS +AE+R AWVSKALCRT DPD LF RGAAQRKA ICRHCP
Sbjct 4 TRIAARIGTDNSARNRLRSAEAEDRAAWVSKALCRTGDPDGLFARGAAQRKATAICRHCP 63
Query 64 VMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEKRKRRTGTA 117
V+ EC A+ALDN+VE+GVWGGMTERQRRALL+QH EVVSW+++L + R TA
Sbjct 64 VILECGAEALDNRVEWGVWGGMTERQRRALLRQHSEVVSWAEFLAAAEHRRRTA 117
>gi|333917932|ref|YP_004491513.1| WhiB family regulatory protein [Amycolicicoccus subflavus DQS3-9A1]
gi|333480153|gb|AEF38713.1| WhiB family regulatory protein [Amycolicicoccus subflavus DQS3-9A1]
Length=129
Score = 156 bits (395), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 72/107 (68%), Positives = 83/107 (78%), Gaps = 0/107 (0%)
Query 5 RPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPV 64
RP RR+ ++ + AE RIAWVS+A CR DPD LFVRGAAQRKAA +CRHCPV
Sbjct 17 RPTTRRSGGLPISAMISTDQAEARIAWVSQARCRGIDPDLLFVRGAAQRKAATVCRHCPV 76
Query 65 MQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEKRK 111
+ EC ADALDN+VEFGVWGGMTERQRRALLKQHPEV SWSD+ ++
Sbjct 77 ILECGADALDNRVEFGVWGGMTERQRRALLKQHPEVESWSDFFAAQR 123
>gi|333992600|ref|YP_004525214.1| transcriptional regulator [Mycobacterium sp. JDM601]
gi|333488568|gb|AEF37960.1| transcriptional regulatory protein Whib-like WhiB4 [Mycobacterium
sp. JDM601]
Length=95
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/89 (85%), Positives = 79/89 (89%), Gaps = 1/89 (1%)
Query 26 EERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGGM 85
E RIAWVSKALCR DPDELFVRGAAQRKAAVICRHCPV+ EC ADALDN+VEFGVWGGM
Sbjct 4 ESRIAWVSKALCRGADPDELFVRGAAQRKAAVICRHCPVVLECLADALDNRVEFGVWGGM 63
Query 86 TERQRRALLKQHPEVVSWSDYL-EKRKRR 113
TERQRRALLKQHPEV SW DY +RK+R
Sbjct 64 TERQRRALLKQHPEVTSWRDYFAAQRKQR 92
>gi|169627513|ref|YP_001701162.1| putative transcriptional regulator WhiB [Mycobacterium abscessus
ATCC 19977]
gi|169239480|emb|CAM60508.1| Putative transcriptional regulator WhiB [Mycobacterium abscessus]
Length=112
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/112 (66%), Positives = 86/112 (77%), Gaps = 5/112 (4%)
Query 1 VSGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
+S +RPA ++A V E RIAWVS+A CR DPDELFVRGAAQRKAAVICR
Sbjct 1 MSASRPA-----MSALHTAVSIDGGEARIAWVSQARCRQGDPDELFVRGAAQRKAAVICR 55
Query 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEKRKR 112
HCPVM EC ADALDN+VEFGVWGG+TERQRRA+LK HPEV SW+D+ +++
Sbjct 56 HCPVMMECGADALDNRVEFGVWGGLTERQRRAMLKAHPEVESWADFFAAQRK 107
>gi|111021292|ref|YP_704264.1| WhiB family transcriptional regulator [Rhodococcus jostii RHA1]
gi|226363635|ref|YP_002781417.1| WhiB family regulatory protein [Rhodococcus opacus B4]
gi|110820822|gb|ABG96106.1| possible transcriptional regulator, WhiB family protein [Rhodococcus
jostii RHA1]
gi|226242124|dbj|BAH52472.1| WhiB family regulatory protein [Rhodococcus opacus B4]
Length=107
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/88 (78%), Positives = 78/88 (89%), Gaps = 0/88 (0%)
Query 25 AEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGG 84
AE RIAWV++A CR DPD+LFVRGAAQRKAA ICRHCPV+ +C ADALDN+VEFGVWGG
Sbjct 15 AEARIAWVTQARCREVDPDQLFVRGAAQRKAATICRHCPVLMQCGADALDNRVEFGVWGG 74
Query 85 MTERQRRALLKQHPEVVSWSDYLEKRKR 112
MTERQRRALLKQHPEV SWSD+ E +++
Sbjct 75 MTERQRRALLKQHPEVESWSDFFEAQRQ 102
>gi|15828239|ref|NP_302502.1| hypothetical protein ML2307 [Mycobacterium leprae TN]
gi|221230716|ref|YP_002504132.1| hypothetical protein MLBr_02307 [Mycobacterium leprae Br4923]
gi|13093932|emb|CAC31823.1| hypothetical protein [Mycobacterium leprae]
gi|219933823|emb|CAR72405.1| hypothetical protein MLBr02307 [Mycobacterium leprae Br4923]
Length=81
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/79 (88%), Positives = 73/79 (93%), Gaps = 0/79 (0%)
Query 36 LCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGGMTERQRRALLK 95
+CR TDPDELFVRGAAQRKAAVICRHCPVMQEC ADALDNKVEFGVWGGMTERQRRALLK
Sbjct 1 MCRATDPDELFVRGAAQRKAAVICRHCPVMQECRADALDNKVEFGVWGGMTERQRRALLK 60
Query 96 QHPEVVSWSDYLEKRKRRT 114
QHPEVVSW+D+ + RK R
Sbjct 61 QHPEVVSWADFFDTRKHRN 79
>gi|54022304|ref|YP_116546.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54013812|dbj|BAD55182.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=107
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 78/88 (89%), Gaps = 0/88 (0%)
Query 25 AEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGG 84
AE RIAWVS+A C+ DPD+LFVRGAAQRKAA ICRHCPV+ +C ADALDN+VEFGVWGG
Sbjct 15 AEARIAWVSQARCKEVDPDQLFVRGAAQRKAATICRHCPVLMQCGADALDNRVEFGVWGG 74
Query 85 MTERQRRALLKQHPEVVSWSDYLEKRKR 112
MTERQRRALLKQHPEV SW+D+ + +++
Sbjct 75 MTERQRRALLKQHPEVTSWADFFQAQRQ 102
>gi|226303953|ref|YP_002763911.1| WhiB family regulatory protein [Rhodococcus erythropolis PR4]
gi|226183068|dbj|BAH31172.1| WhiB family regulatory protein [Rhodococcus erythropolis PR4]
Length=107
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 78/88 (89%), Gaps = 0/88 (0%)
Query 25 AEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGG 84
AE RIAWV++A CR DPD+LFVRGAAQRKAA ICRHCPV+ +C ADALDN+VEFGVWGG
Sbjct 15 AEARIAWVTQARCREVDPDQLFVRGAAQRKAATICRHCPVLMQCGADALDNRVEFGVWGG 74
Query 85 MTERQRRALLKQHPEVVSWSDYLEKRKR 112
MTERQRRALLKQHP+V SWS++ E +++
Sbjct 75 MTERQRRALLKQHPDVDSWSEFFEDQRQ 102
>gi|262200510|ref|YP_003271718.1| transcription factor WhiB [Gordonia bronchialis DSM 43247]
gi|262083857|gb|ACY19825.1| transcription factor WhiB [Gordonia bronchialis DSM 43247]
Length=103
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/89 (76%), Positives = 75/89 (85%), Gaps = 0/89 (0%)
Query 25 AEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGG 84
EER+ WV++A CR DPDELFVRGAAQRKAA ICRHCPV EC ADALDN+VEFGVWGG
Sbjct 9 GEERLTWVAQARCRGGDPDELFVRGAAQRKAATICRHCPVQLECGADALDNRVEFGVWGG 68
Query 85 MTERQRRALLKQHPEVVSWSDYLEKRKRR 113
MTERQRRALL+QHPEV SWS + ++RR
Sbjct 69 MTERQRRALLRQHPEVTSWSAFFAAQRRR 97
>gi|296141606|ref|YP_003648849.1| transcription factor WhiB [Tsukamurella paurometabola DSM 20162]
gi|296029740|gb|ADG80510.1| transcription factor WhiB [Tsukamurella paurometabola DSM 20162]
Length=103
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/95 (73%), Positives = 77/95 (82%), Gaps = 0/95 (0%)
Query 23 VDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVW 82
VD E+R+ WVSKA CR DPDELFVRGAAQRK A ICRHCPV EC ADALD++VEFGVW
Sbjct 8 VDDEDRLVWVSKAKCRDVDPDELFVRGAAQRKVATICRHCPVQLECGADALDSRVEFGVW 67
Query 83 GGMTERQRRALLKQHPEVVSWSDYLEKRKRRTGTA 117
GGMTERQRRALL+QHPEV SW + E ++ R TA
Sbjct 68 GGMTERQRRALLRQHPEVTSWRAFFEAQRDRKRTA 102
>gi|229492181|ref|ZP_04385990.1| transcription factor WhiB [Rhodococcus erythropolis SK121]
gi|229320969|gb|EEN86781.1| transcription factor WhiB [Rhodococcus erythropolis SK121]
Length=98
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 78/88 (89%), Gaps = 0/88 (0%)
Query 25 AEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGG 84
AE RIAWV++A CR DPD+LFVRGAAQRKAA ICRHCPV+ +C ADALDN+VEFGVWGG
Sbjct 6 AEARIAWVTQARCREVDPDQLFVRGAAQRKAATICRHCPVLMQCGADALDNRVEFGVWGG 65
Query 85 MTERQRRALLKQHPEVVSWSDYLEKRKR 112
MTERQRRALLKQHP+V SWS++ E +++
Sbjct 66 MTERQRRALLKQHPDVDSWSEFFEDQRQ 93
>gi|240171486|ref|ZP_04750145.1| transcription factor WhiB [Mycobacterium kansasii ATCC 12478]
Length=126
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/105 (65%), Positives = 83/105 (80%), Gaps = 0/105 (0%)
Query 7 AARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQ 66
AA+ +TA DAE R AWVS+A CR DP+ELFVRGAAQR+AA ICR+CPV+
Sbjct 8 AAQTGAITAVHRPPYGSDAEARAAWVSQARCRNIDPEELFVRGAAQREAATICRNCPVIL 67
Query 67 ECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEKRK 111
ECAADALDN+VE+G+WGG+TERQRRALLKQHPEV SW+ ++ R+
Sbjct 68 ECAADALDNRVEYGIWGGLTERQRRALLKQHPEVKSWAAFIATRR 112
>gi|343926463|ref|ZP_08765968.1| putative WhiB family regulatory protein [Gordonia alkanivorans
NBRC 16433]
gi|343763701|dbj|GAA12894.1| putative WhiB family regulatory protein [Gordonia alkanivorans
NBRC 16433]
Length=91
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/85 (77%), Positives = 74/85 (88%), Gaps = 0/85 (0%)
Query 29 IAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGGMTER 88
+AWV+KA CR DPD+LFVRGAAQRKAA ICRHCPV EC ADALDN+VEFGVWGG+TER
Sbjct 1 MAWVAKARCRGGDPDDLFVRGAAQRKAATICRHCPVQLECGADALDNRVEFGVWGGLTER 60
Query 89 QRRALLKQHPEVVSWSDYLEKRKRR 113
QRRALL+QHPEV SWS + E ++RR
Sbjct 61 QRRALLRQHPEVTSWSAFFEAQRRR 85
>gi|319949575|ref|ZP_08023620.1| WhiB family transcriptional regulator [Dietzia cinnamea P4]
gi|319436751|gb|EFV91826.1| WhiB family transcriptional regulator [Dietzia cinnamea P4]
Length=125
Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/116 (61%), Positives = 86/116 (75%), Gaps = 5/116 (4%)
Query 2 SGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRH 61
+G RP + +N ++ V+ E R WV++A C+ DPDELFVRGAAQRKAA ICRH
Sbjct 14 NGVRPGS--SNPLGSEEVI---IGEGRQEWVAQARCKDIDPDELFVRGAAQRKAASICRH 68
Query 62 CPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYLEKRKRRTGTA 117
CPV+ +C ADALDN+VEFGVWGGMTERQRRALLKQHPEV SW+D+ ++ R A
Sbjct 69 CPVLLQCRADALDNRVEFGVWGGMTERQRRALLKQHPEVRSWADFFAQQLERHSAA 124
>gi|68537071|ref|YP_251776.1| WhiB family transcriptional regulator [Corynebacterium jeikeium
K411]
gi|68264670|emb|CAI38158.1| putative transcriptional regulator (WhiB family) [Corynebacterium
jeikeium K411]
Length=124
Score = 139 bits (351), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 63/106 (60%), Positives = 78/106 (74%), Gaps = 5/106 (4%)
Query 2 SGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRH 61
SG++P + A+ V R W+++A CR DPDELFV+GAAQRKA ICRH
Sbjct 12 SGSKPTCQ-----PAEQVTTRESFNNRGEWITQAHCRNVDPDELFVKGAAQRKAVAICRH 66
Query 62 CPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYL 107
CPV+ +C ADALDNKVEFGVWGGMTERQRRALL++HPE+ SW+D+
Sbjct 67 CPVVLQCRADALDNKVEFGVWGGMTERQRRALLRKHPEITSWADFF 112
>gi|260579415|ref|ZP_05847297.1| transcriptional regulator (WhiB family) [Corynebacterium jeikeium
ATCC 43734]
gi|258602544|gb|EEW15839.1| transcriptional regulator (WhiB family) [Corynebacterium jeikeium
ATCC 43734]
Length=124
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/107 (58%), Positives = 78/107 (73%), Gaps = 5/107 (4%)
Query 1 VSGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
SG++P + A+ + R W+++A CR DPDELFV+GAAQRKA ICR
Sbjct 11 TSGSKPTCQ-----PAEQITTRESFNNRGEWITQAHCRNVDPDELFVKGAAQRKAVAICR 65
Query 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYL 107
HCPV+ +C ADALDNKVEFGVWGGMTERQRRALL++HPE+ SW+D+
Sbjct 66 HCPVVLQCRADALDNKVEFGVWGGMTERQRRALLRKHPEITSWADFF 112
>gi|227505984|ref|ZP_03936033.1| WhiB family transcriptional regulator [Corynebacterium striatum
ATCC 6940]
gi|227197418|gb|EEI77466.1| WhiB family transcriptional regulator [Corynebacterium striatum
ATCC 6940]
Length=133
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/87 (72%), Positives = 73/87 (84%), Gaps = 0/87 (0%)
Query 21 RSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFG 80
+SV A ER WV++A CR DPD LFVRGA QRKAAVICRHCPV+ EC ADALDN+VEFG
Sbjct 38 KSVSATERGEWVTQAKCRNGDPDALFVRGAEQRKAAVICRHCPVLNECRADALDNRVEFG 97
Query 81 VWGGMTERQRRALLKQHPEVVSWSDYL 107
VWGG+TERQRRALL+++P + SW+ YL
Sbjct 98 VWGGLTERQRRALLRKNPHITSWAHYL 124
>gi|336326583|ref|YP_004606549.1| WhiB family transcription regulator [Corynebacterium resistens
DSM 45100]
gi|336102565|gb|AEI10385.1| WhiB family transcription regulator [Corynebacterium resistens
DSM 45100]
Length=151
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/107 (58%), Positives = 77/107 (72%), Gaps = 0/107 (0%)
Query 1 VSGTRPAARRTNLTAAQNVVRSVDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
V+G++ +A + A V R W++ A CR DPDELFV+GA QRKA ICR
Sbjct 34 VAGSKASATKPTCQPADQVTSRESFNNRGEWITLAHCRNVDPDELFVKGAEQRKAVAICR 93
Query 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYL 107
HCPV+ +C ADALDN+VEFGVWGGMTERQRRALL++HPE+ SW+D+
Sbjct 94 HCPVVLQCRADALDNRVEFGVWGGMTERQRRALLRKHPEITSWADFF 140
>gi|120402741|ref|YP_952570.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1]
gi|119955559|gb|ABM12564.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1]
Length=101
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/89 (72%), Positives = 76/89 (86%), Gaps = 0/89 (0%)
Query 26 EERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGGM 85
E+R AWVSKA C + DP+ LFVRGAAQ+ AA ICR CPV+ ECAADALD++VE+GVWGGM
Sbjct 10 EDRYAWVSKARCASADPEGLFVRGAAQKDAAKICRGCPVITECAADALDHRVEYGVWGGM 69
Query 86 TERQRRALLKQHPEVVSWSDYLEKRKRRT 114
TERQRRALLK HPEVVSW+ +L ++KRR
Sbjct 70 TERQRRALLKAHPEVVSWAAFLAEQKRRA 98
>gi|334564414|ref|ZP_08517405.1| WhiB family transcriptional regulator [Corynebacterium bovis
DSM 20582]
Length=118
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/81 (75%), Positives = 70/81 (87%), Gaps = 0/81 (0%)
Query 27 ERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGGMT 86
R WV++A CRT DPDELFVRGAAQRKA ICRHCPV+ +C ADALDN+VEFGVWGGMT
Sbjct 29 NRGEWVTQAHCRTVDPDELFVRGAAQRKAVAICRHCPVVLQCRADALDNRVEFGVWGGMT 88
Query 87 ERQRRALLKQHPEVVSWSDYL 107
ERQRRALL++HPE+ SW+D+
Sbjct 89 ERQRRALLRRHPEITSWADFF 109
>gi|340795435|ref|YP_004760898.1| putative WhiB transcription regulator [Corynebacterium variabile
DSM 44702]
gi|340535345|gb|AEK37825.1| putative WhiB transcription regulator [Corynebacterium variabile
DSM 44702]
Length=126
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/77 (75%), Positives = 67/77 (88%), Gaps = 0/77 (0%)
Query 31 WVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGGMTERQR 90
W+++A CR DP+ELFVRGAAQRKA ICRHCPV+ +C ADALDN VEFGVWGGMTERQR
Sbjct 37 WITQAHCRNVDPEELFVRGAAQRKAVAICRHCPVVLQCRADALDNNVEFGVWGGMTERQR 96
Query 91 RALLKQHPEVVSWSDYL 107
RALL++HPEV SW+D+
Sbjct 97 RALLRKHPEVTSWADFF 113
>gi|227502459|ref|ZP_03932508.1| WhiB family transcriptional regulator [Corynebacterium accolens
ATCC 49725]
gi|306835030|ref|ZP_07468076.1| WhiB family transcriptional regulator [Corynebacterium accolens
ATCC 49726]
gi|227076828|gb|EEI14791.1| WhiB family transcriptional regulator [Corynebacterium accolens
ATCC 49725]
gi|304569088|gb|EFM44607.1| WhiB family transcriptional regulator [Corynebacterium accolens
ATCC 49726]
Length=107
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/83 (72%), Positives = 70/83 (85%), Gaps = 0/83 (0%)
Query 27 ERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGGMT 86
ER WV++A CR DPD LFVRGA QRKAAVICRHCPV+ EC ADALDN+VEFGVWGG+T
Sbjct 18 ERGEWVTQAKCRNEDPDALFVRGAEQRKAAVICRHCPVLTECRADALDNRVEFGVWGGLT 77
Query 87 ERQRRALLKQHPEVVSWSDYLEK 109
ERQRRALL+++P + W++YL K
Sbjct 78 ERQRRALLRKNPHITDWANYLAK 100
>gi|213966279|ref|ZP_03394462.1| transcription factor WhiB [Corynebacterium amycolatum SK46]
gi|213951052|gb|EEB62451.1| transcription factor WhiB [Corynebacterium amycolatum SK46]
Length=120
Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 57/81 (71%), Positives = 71/81 (88%), Gaps = 0/81 (0%)
Query 27 ERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGGMT 86
+R WV +A CR DPD+LFVRGAAQR+AAVICRHCPV+ +C ADALDN+VEFGVWGG+T
Sbjct 26 DRQEWVPRAKCRDIDPDKLFVRGAAQREAAVICRHCPVVLQCRADALDNRVEFGVWGGLT 85
Query 87 ERQRRALLKQHPEVVSWSDYL 107
ERQRRA+L++HPE+ SW+D+
Sbjct 86 ERQRRAMLREHPEITSWADFY 106
>gi|227832032|ref|YP_002833739.1| WhiB transcriptional regulator [Corynebacterium aurimucosum ATCC
700975]
gi|262184113|ref|ZP_06043534.1| WhiB transcriptional regulator [Corynebacterium aurimucosum ATCC
700975]
gi|227453048|gb|ACP31801.1| WhiB transcriptional regulator [Corynebacterium aurimucosum ATCC
700975]
Length=99
Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 59/81 (73%), Positives = 69/81 (86%), Gaps = 0/81 (0%)
Query 27 ERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGGMT 86
ER WV++A CR DPD LFVRGA QRKAAVICRHCPV+ EC ADALDN+VEFGVWGG+T
Sbjct 10 ERGEWVTQAKCRNGDPDALFVRGAEQRKAAVICRHCPVLNECRADALDNRVEFGVWGGLT 69
Query 87 ERQRRALLKQHPEVVSWSDYL 107
ERQRRALL+++P + SW+ YL
Sbjct 70 ERQRRALLRKNPHITSWAHYL 90
>gi|237786555|ref|YP_002907260.1| putative WhiB family transcriptional regulator [Corynebacterium
kroppenstedtii DSM 44385]
gi|237759467|gb|ACR18717.1| putative transcriptional regulator, WhiB family [Corynebacterium
kroppenstedtii DSM 44385]
Length=123
Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/113 (57%), Positives = 80/113 (71%), Gaps = 7/113 (6%)
Query 2 SGTRPAARRTNLTAAQNVVRSVDA-------EERIAWVSKALCRTTDPDELFVRGAAQRK 54
S TRPA T + + VD+ ER W++ A CR DP+ELFV+G+ QR+
Sbjct 4 SLTRPADTSLATTKDGRIQQKVDSLTDPSSFTERGQWITHAKCRDIDPEELFVKGSKQRQ 63
Query 55 AAVICRHCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYL 107
AA ICRHCPV+ +C ADALDN+VEFGVWGGMTERQRRALL++HPEV SW+D+
Sbjct 64 AAAICRHCPVVLQCRADALDNRVEFGVWGGMTERQRRALLREHPEVESWADFY 116
>gi|255324176|ref|ZP_05365298.1| transcription factor WhiB [Corynebacterium tuberculostearicum
SK141]
gi|311741062|ref|ZP_07714887.1| WhiB family transcriptional regulator [Corynebacterium pseudogenitalium
ATCC 33035]
gi|255298692|gb|EET77987.1| transcription factor WhiB [Corynebacterium tuberculostearicum
SK141]
gi|311303864|gb|EFQ79942.1| WhiB family transcriptional regulator [Corynebacterium pseudogenitalium
ATCC 33035]
Length=107
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/81 (72%), Positives = 68/81 (84%), Gaps = 0/81 (0%)
Query 27 ERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGGMT 86
ER WV++A CR DPD LFVRGA QRKAAVICRHCPV+ EC ADALDN+VEFGVWGG+T
Sbjct 18 ERGEWVTQAKCRKGDPDALFVRGAEQRKAAVICRHCPVLTECRADALDNRVEFGVWGGLT 77
Query 87 ERQRRALLKQHPEVVSWSDYL 107
ERQRRALL+++P + W+ YL
Sbjct 78 ERQRRALLRKNPHITDWAHYL 98
>gi|118466521|ref|YP_879729.1| transcription factor WhiB [Mycobacterium avium 104]
gi|118167808|gb|ABK68705.1| Transcription factor WhiB [Mycobacterium avium 104]
gi|336460832|gb|EGO39717.1| Transcription factor WhiB [Mycobacterium avium subsp. paratuberculosis
S397]
Length=70
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/68 (86%), Positives = 65/68 (96%), Gaps = 0/68 (0%)
Query 47 VRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDY 106
+RGAAQRKAAVICRHCPVMQEC ADALDN+VEFGVWGGMTERQRRALLKQHPEVVSW+D+
Sbjct 1 MRGAAQRKAAVICRHCPVMQECGADALDNRVEFGVWGGMTERQRRALLKQHPEVVSWADF 60
Query 107 LEKRKRRT 114
+KR+ R+
Sbjct 61 FDKRRNRS 68
>gi|305680542|ref|ZP_07403350.1| transcription factor WhiB [Corynebacterium matruchotii ATCC 14266]
gi|305660073|gb|EFM49572.1| transcription factor WhiB [Corynebacterium matruchotii ATCC 14266]
Length=113
Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/81 (72%), Positives = 69/81 (86%), Gaps = 0/81 (0%)
Query 27 ERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGGMT 86
ER WV +A CR DPD LFVRGAAQR+AAVICR CPV+ +C ADALDNKVEFGVWGG+T
Sbjct 24 ERGEWVMQANCRNGDPDALFVRGAAQRRAAVICRQCPVIVQCRADALDNKVEFGVWGGLT 83
Query 87 ERQRRALLKQHPEVVSWSDYL 107
ERQRRALL+++P + SW++YL
Sbjct 84 ERQRRALLRKNPHITSWAEYL 104
>gi|300779997|ref|ZP_07089853.1| transcription regulator WhiB [Corynebacterium genitalium ATCC
33030]
gi|300534107|gb|EFK55166.1| transcription regulator WhiB [Corynebacterium genitalium ATCC
33030]
Length=119
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/85 (69%), Positives = 68/85 (80%), Gaps = 0/85 (0%)
Query 23 VDAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVW 82
VD+ ER WV+ A+CR DPD LFVRGA QRKAA ICR CPV EC ADALDNKVEFGVW
Sbjct 26 VDSFERGEWVTLAVCRAGDPDALFVRGAEQRKAAAICRRCPVQMECRADALDNKVEFGVW 85
Query 83 GGMTERQRRALLKQHPEVVSWSDYL 107
GG+TERQRRA+L+++P V W+ +L
Sbjct 86 GGLTERQRRAVLRKNPHVTDWAAHL 110
>gi|227549676|ref|ZP_03979725.1| WhiB family transcriptional regulator [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078253|gb|EEI16216.1| WhiB family transcriptional regulator [Corynebacterium lipophiloflavum
DSM 44291]
Length=126
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/107 (57%), Positives = 76/107 (72%), Gaps = 8/107 (7%)
Query 6 PAARRTNLTAAQNVVRSVDAE-----ERIAWVSKALCRTTDPDELFVRGAAQRKAAVICR 60
PA RR+ + R+ D+ +R WV+ A CR+ DPD LFVRGA QRKAA ICR
Sbjct 14 PAPRRST---SVGTTRNYDSGGQLVFDRGEWVTLATCRSGDPDALFVRGAEQRKAAAICR 70
Query 61 HCPVMQECAADALDNKVEFGVWGGMTERQRRALLKQHPEVVSWSDYL 107
CPV EC ADALDN++EFGVWGG+TERQRRA+L+Q+P V W+++L
Sbjct 71 RCPVQMECRADALDNRIEFGVWGGLTERQRRAVLRQNPHVTDWAEHL 117
>gi|225022062|ref|ZP_03711254.1| hypothetical protein CORMATOL_02095 [Corynebacterium matruchotii
ATCC 33806]
gi|224945183|gb|EEG26392.1| hypothetical protein CORMATOL_02095 [Corynebacterium matruchotii
ATCC 33806]
Length=84
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/74 (73%), Positives = 65/74 (88%), Gaps = 0/74 (0%)
Query 34 KALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGGMTERQRRAL 93
+A CR DPD LFVRGAAQR+AAVICR CPV+ +C ADALDNKVEFGVWGG+TERQRRAL
Sbjct 2 QANCRNGDPDALFVRGAAQRRAAVICRQCPVIVQCRADALDNKVEFGVWGGLTERQRRAL 61
Query 94 LKQHPEVVSWSDYL 107
L+++P + SW++YL
Sbjct 62 LRKNPHITSWAEYL 75
>gi|226362406|ref|YP_002780184.1| WhiB family regulatory protein [Rhodococcus opacus B4]
gi|226240891|dbj|BAH51239.1| WhiB family regulatory protein [Rhodococcus opacus B4]
Length=98
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/89 (62%), Positives = 67/89 (76%), Gaps = 1/89 (1%)
Query 24 DAEERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWG 83
D+ + W+++ CR DPD LFVRGAAQRKAA +CRHCPV+ +C A ALDN+VEFG+WG
Sbjct 9 DSGAELHWITRGRCRDGDPDRLFVRGAAQRKAAALCRHCPVLMQCGAYALDNRVEFGIWG 68
Query 84 GMTERQRRALLKQHPEVVSWSDYLEKRKR 112
GMTERQRRALL+ HP V WSD + R
Sbjct 69 GMTERQRRALLEAHPR-VRWSDLFARPSR 96
>gi|38232920|ref|NP_938687.1| putative regulatory protein [Corynebacterium diphtheriae NCTC
13129]
gi|38199178|emb|CAE48803.1| Putative regulatory protein [Corynebacterium diphtheriae]
Length=115
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/81 (67%), Positives = 64/81 (80%), Gaps = 0/81 (0%)
Query 27 ERIAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGGMT 86
+R WV +A CR DPD LFVRGA QR+AA ICR CPVM +C ADALDNKVEFGVWGG+T
Sbjct 26 DRNDWVMQASCRNGDPDALFVRGAEQRRAAAICRQCPVMIQCRADALDNKVEFGVWGGLT 85
Query 87 ERQRRALLKQHPEVVSWSDYL 107
ERQRRA+L+++P V SW +
Sbjct 86 ERQRRAILRKNPHVDSWEQFF 106
>gi|111020352|ref|YP_703324.1| WhiB family transcriptional regulator [Rhodococcus jostii RHA1]
gi|110819882|gb|ABG95166.1| possible transcriptional regulator, WhiB family protein [Rhodococcus
jostii RHA1]
Length=107
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/79 (69%), Positives = 64/79 (82%), Gaps = 1/79 (1%)
Query 29 IAWVSKALCRTTDPDELFVRGAAQRKAAVICRHCPVMQECAADALDNKVEFGVWGGMTER 88
+ W+++A CR DPD+LFV GAAQRKAA +CRHCPV+ EC A ALDN+VEFG+WGGMTER
Sbjct 17 LGWITRAQCREGDPDQLFVTGAAQRKAAALCRHCPVLMECGAYALDNRVEFGIWGGMTER 76
Query 89 QRRALLKQHPEVVSWSDYL 107
QRRALL HPE V WS+
Sbjct 77 QRRALLATHPE-VRWSELF 94
Lambda K H
0.320 0.130 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129536132814
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40