BLAST Search Results


BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3686c

Length=110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|289555949|ref|ZP_06445159.1|  conserved hypothetical protein [...   216    1e-54
gi|148824890|ref|YP_001289644.1|  hypothetical protein TBFG_13717...   215    2e-54
gi|15610822|ref|NP_218203.1|  hypothetical protein Rv3686c [Mycob...   215    2e-54
gi|167970838|ref|ZP_02553115.1|  hypothetical protein MtubH3_2346...   214    3e-54
gi|15843304|ref|NP_338341.1|  hypothetical protein MT3788 [Mycoba...   214    4e-54
gi|289445283|ref|ZP_06435027.1|  conserved hypothetical protein [...   211    3e-53
gi|289748200|ref|ZP_06507578.1|  conserved hypothetical protein [...   143    9e-33
gi|240172251|ref|ZP_04750910.1|  hypothetical protein MkanA1_2324...  54.3    6e-06
gi|183985147|ref|YP_001853438.1|  hypothetical protein MMAR_5177 ...  49.3    2e-04
gi|118619429|ref|YP_907761.1|  hypothetical protein MUL_4264 [Myc...  47.0    0.001
gi|296166745|ref|ZP_06849169.1|  conserved hypothetical protein [...  44.3    0.006
gi|299753837|ref|XP_001833563.2|  myosin 5 [Coprinopsis cinerea o...  41.6    0.041
gi|118463959|ref|YP_879722.1|  hypothetical protein MAV_0438 [Myc...  35.4    2.8  
gi|118472245|ref|YP_886149.1|  UsfY protein [Mycobacterium smegma...  34.7    5.4  
gi|46202886|ref|ZP_00208699.1|  COG1071: Pyruvate/2-oxoglutarate ...  34.3    5.5  
gi|41406481|ref|NP_959317.1|  hypothetical protein MAP0383 [Mycob...  34.3    6.7  
gi|254773444|ref|ZP_05214960.1|  hypothetical protein MaviaA2_020...  33.9    7.3  
gi|336460842|gb|EGO39727.1|  hypothetical protein MAPs_36640 [Myc...  33.9    7.6  
gi|83311415|ref|YP_421679.1|  pyruvate/2-oxoglutarate dehydrogena...  33.9    8.6  


>gi|289555949|ref|ZP_06445159.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|297733357|ref|ZP_06962475.1| hypothetical protein MtubKR_19795 [Mycobacterium tuberculosis 
KZN R506]
 gi|306805529|ref|ZP_07442197.1| hypothetical protein TMGG_01227 [Mycobacterium tuberculosis SUMu007]
 26 more sequence titles
 gi|308232532|ref|ZP_07416379.2| hypothetical protein TMAG_00176 [Mycobacterium tuberculosis SUMu001]
 gi|308369194|ref|ZP_07416911.2| hypothetical protein TMBG_02223 [Mycobacterium tuberculosis SUMu002]
 gi|308371417|ref|ZP_07424919.2| hypothetical protein TMCG_01188 [Mycobacterium tuberculosis SUMu003]
 gi|308372617|ref|ZP_07429285.2| hypothetical protein TMDG_01420 [Mycobacterium tuberculosis SUMu004]
 gi|308372707|ref|ZP_07429585.2| hypothetical protein TMEG_00179 [Mycobacterium tuberculosis SUMu005]
 gi|308373783|ref|ZP_07433649.2| hypothetical protein TMFG_01916 [Mycobacterium tuberculosis SUMu006]
 gi|308376189|ref|ZP_07437986.2| hypothetical protein TMHG_02748 [Mycobacterium tuberculosis SUMu008]
 gi|308378437|ref|ZP_07482587.2| hypothetical protein TMIG_00035 [Mycobacterium tuberculosis SUMu009]
 gi|308379581|ref|ZP_07486820.2| hypothetical protein TMJG_00936 [Mycobacterium tuberculosis SUMu010]
 gi|308380767|ref|ZP_07491038.2| hypothetical protein TMKG_00926 [Mycobacterium tuberculosis SUMu011]
 gi|308406217|ref|ZP_07495595.2| hypothetical protein TMLG_00174 [Mycobacterium tuberculosis SUMu012]
 gi|289440581|gb|EFD23074.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|308213571|gb|EFO72970.1| hypothetical protein TMAG_00176 [Mycobacterium tuberculosis SUMu001]
 gi|308328303|gb|EFP17154.1| hypothetical protein TMBG_02223 [Mycobacterium tuberculosis SUMu002]
 gi|308328707|gb|EFP17558.1| hypothetical protein TMCG_01188 [Mycobacterium tuberculosis SUMu003]
 gi|308332549|gb|EFP21400.1| hypothetical protein TMDG_01420 [Mycobacterium tuberculosis SUMu004]
 gi|308340044|gb|EFP28895.1| hypothetical protein TMEG_00179 [Mycobacterium tuberculosis SUMu005]
 gi|308344173|gb|EFP33024.1| hypothetical protein TMFG_01916 [Mycobacterium tuberculosis SUMu006]
 gi|308347829|gb|EFP36680.1| hypothetical protein TMGG_01227 [Mycobacterium tuberculosis SUMu007]
 gi|308351817|gb|EFP40668.1| hypothetical protein TMHG_02748 [Mycobacterium tuberculosis SUMu008]
 gi|308352483|gb|EFP41334.1| hypothetical protein TMIG_00035 [Mycobacterium tuberculosis SUMu009]
 gi|308356431|gb|EFP45282.1| hypothetical protein TMJG_00936 [Mycobacterium tuberculosis SUMu010]
 gi|308360379|gb|EFP49230.1| hypothetical protein TMKG_00926 [Mycobacterium tuberculosis SUMu011]
 gi|308364078|gb|EFP52929.1| hypothetical protein TMLG_00174 [Mycobacterium tuberculosis SUMu012]
 gi|323717548|gb|EGB26750.1| hypothetical protein TMMG_00175 [Mycobacterium tuberculosis CDC1551A]
 gi|328460458|gb|AEB05881.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
Length=121

 Score =  216 bits (549),  Expect = 1e-54, Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%)

Query  1    MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  60
            MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA
Sbjct  12   MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  71

Query  61   LVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR  110
            LVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR
Sbjct  72   LVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR  121


>gi|148824890|ref|YP_001289644.1| hypothetical protein TBFG_13717 [Mycobacterium tuberculosis F11]
 gi|254366231|ref|ZP_04982275.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289747523|ref|ZP_06506901.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|134151743|gb|EBA43788.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|148723417|gb|ABR08042.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|289688051|gb|EFD55539.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=112

 Score =  215 bits (548),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%)

Query  1    MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  60
            MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA
Sbjct  3    MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  62

Query  61   LVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR  110
            LVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR
Sbjct  63   LVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR  112


>gi|15610822|ref|NP_218203.1| hypothetical protein Rv3686c [Mycobacterium tuberculosis H37Rv]
 gi|31794857|ref|NP_857350.1| hypothetical protein Mb3711c [Mycobacterium bovis AF2122/97]
 gi|121639600|ref|YP_979824.1| hypothetical protein BCG_3745c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 28 more sequence titles
 gi|148663549|ref|YP_001285072.1| hypothetical protein MRA_3721 [Mycobacterium tuberculosis H37Ra]
 gi|224992096|ref|YP_002646785.1| hypothetical protein JTY_3746 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289441119|ref|ZP_06430863.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289571928|ref|ZP_06452155.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289572335|ref|ZP_06452562.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289755812|ref|ZP_06515190.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289759842|ref|ZP_06519220.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289763864|ref|ZP_06523242.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|298527161|ref|ZP_07014570.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|339633678|ref|YP_004725320.1| hypothetical protein MAF_36940 [Mycobacterium africanum GM041182]
 gi|340628659|ref|YP_004747111.1| hypothetical protein MCAN_37071 [Mycobacterium canettii CIPT 
140010059]
 gi|2960110|emb|CAA18008.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|31620454|emb|CAD95897.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121495248|emb|CAL73734.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|148507701|gb|ABQ75510.1| hypothetical protein MRA_3721 [Mycobacterium tuberculosis H37Ra]
 gi|224775211|dbj|BAH28017.1| hypothetical protein JTY_3746 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|289414038|gb|EFD11278.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289536766|gb|EFD41344.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289545682|gb|EFD49330.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289696399|gb|EFD63828.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289711370|gb|EFD75386.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289715406|gb|EFD79418.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298496955|gb|EFI32249.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|326905523|gb|EGE52456.1| hypothetical protein TBPG_03478 [Mycobacterium tuberculosis W-148]
 gi|339333034|emb|CCC28763.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
 gi|340006849|emb|CCC46038.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
 gi|341603621|emb|CCC66302.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344221522|gb|AEN02153.1| hypothetical protein MTCTRI2_3756 [Mycobacterium tuberculosis 
CTRI-2]
Length=110

 Score =  215 bits (547),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%)

Query  1    MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  60
            MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA
Sbjct  1    MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  60

Query  61   LVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR  110
            LVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR
Sbjct  61   LVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR  110


>gi|167970838|ref|ZP_02553115.1| hypothetical protein MtubH3_23465 [Mycobacterium tuberculosis 
H37Ra]
 gi|253800730|ref|YP_003033731.1| hypothetical protein TBMG_03728 [Mycobacterium tuberculosis KZN 
1435]
 gi|254552798|ref|ZP_05143245.1| hypothetical protein Mtube_20502 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 6 more sequence titles
 gi|294995406|ref|ZP_06801097.1| hypothetical protein Mtub2_13056 [Mycobacterium tuberculosis 
210]
 gi|297636363|ref|ZP_06954143.1| hypothetical protein MtubK4_19655 [Mycobacterium tuberculosis 
KZN 4207]
 gi|313660688|ref|ZP_07817568.1| hypothetical protein MtubKV_19790 [Mycobacterium tuberculosis 
KZN V2475]
 gi|253322233|gb|ACT26836.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
 gi|339296495|gb|AEJ48606.1| hypothetical protein CCDC5079_3417 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339300094|gb|AEJ52204.1| hypothetical protein CCDC5180_3367 [Mycobacterium tuberculosis 
CCDC5180]
Length=149

 Score =  214 bits (546),  Expect = 3e-54, Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%)

Query  1    MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  60
            MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA
Sbjct  40   MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  99

Query  61   LVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR  110
            LVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR
Sbjct  100  LVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR  149


>gi|15843304|ref|NP_338341.1| hypothetical protein MT3788 [Mycobacterium tuberculosis CDC1551]
 gi|254233183|ref|ZP_04926509.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|13883664|gb|AAK48155.1| hypothetical protein MT3788 [Mycobacterium tuberculosis CDC1551]
 gi|124602976|gb|EAY61251.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=166

 Score =  214 bits (544),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%)

Query  1    MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  60
            MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA
Sbjct  57   MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  116

Query  61   LVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR  110
            LVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR
Sbjct  117  LVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR  166


>gi|289445283|ref|ZP_06435027.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289418241|gb|EFD15442.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=110

 Score =  211 bits (537),  Expect = 3e-53, Method: Compositional matrix adjust.
 Identities = 109/110 (99%), Positives = 109/110 (99%), Gaps = 0/110 (0%)

Query  1    MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  60
            MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA
Sbjct  1    MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  60

Query  61   LVVAVMAPWCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR  110
            LVVAVMAP CRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR
Sbjct  61   LVVAVMAPRCRVAYIAHGQHRVCGETLRGTPAGETASFPTGWRGLRFSTR  110


>gi|289748200|ref|ZP_06507578.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289688787|gb|EFD56216.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=133

 Score =  143 bits (360),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 77/77 (100%), Positives = 77/77 (100%), Gaps = 0/77 (0%)

Query  1    MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  60
            MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA
Sbjct  57   MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  116

Query  61   LVVAVMAPWCRVAYIAH  77
            LVVAVMAPWCRVAYIAH
Sbjct  117  LVVAVMAPWCRVAYIAH  133


>gi|240172251|ref|ZP_04750910.1| hypothetical protein MkanA1_23249 [Mycobacterium kansasii ATCC 
12478]
Length=89

 Score = 54.3 bits (129),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 39/79 (50%), Positives = 48/79 (61%), Gaps = 8/79 (10%)

Query  28   NVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAALVVAVMAPWCRVAYIAHGQHRVCGETL  87
            NVPGLV A +WAVGLVAGLV L  GH  VAA  LVVAVM+PW  +A        V    +
Sbjct  8    NVPGLVAAGLWAVGLVAGLVLLATGHEVVAAVILVVAVMSPWFGLA--------VSRSRI  59

Query  88   RGTPAGETASFPTGWRGLR  106
              + +GE  + P GW G++
Sbjct  60   PASGSGEPETMPNGWHGMK  78


>gi|183985147|ref|YP_001853438.1| hypothetical protein MMAR_5177 [Mycobacterium marinum M]
 gi|183178473|gb|ACC43583.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=86

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 31/82 (38%), Positives = 46/82 (57%), Gaps = 7/82 (8%)

Query  1   MVYTGSDAG--DHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAA  58
           M+ TG+     D    P P  +G+     +V GLV A VW +GLV GL+AL IG + +A+
Sbjct  3   MICTGNSVVRVDDRLEPAPGETGT-----SVSGLVAAGVWVIGLVIGLIALGIGQVGIAS  57

Query  59  AALVVAVMAPWCRVAYIAHGQH  80
             L VA++APW  +A  +  + 
Sbjct  58  TTLGVAIVAPWLGLAAASRSRR  79


>gi|118619429|ref|YP_907761.1| hypothetical protein MUL_4264 [Mycobacterium ulcerans Agy99]
 gi|118571539|gb|ABL06290.1| conserved hypothetical membrane protein [Mycobacterium ulcerans 
Agy99]
Length=86

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 30/82 (37%), Positives = 45/82 (55%), Gaps = 7/82 (8%)

Query  1   MVYTGSDAG--DHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAA  58
           M+ TG+     D    P P  + +     +V GLV A VW +GLV GL+AL IG + +A+
Sbjct  3   MICTGNSVVRVDDRLEPAPGETAT-----SVSGLVAAGVWVIGLVIGLIALGIGQVGIAS  57

Query  59  AALVVAVMAPWCRVAYIAHGQH  80
             L VA++APW  +A  +  + 
Sbjct  58  TTLGVAIVAPWLGLAAASRSRR  79


>gi|296166745|ref|ZP_06849169.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897915|gb|EFG77497.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=96

 Score = 44.3 bits (103),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 28/49 (58%), Positives = 34/49 (70%), Gaps = 1/49 (2%)

Query  29  VPGLVVAAVWAVGLVAGLVALTIGHLAVAAAALVVAVMAPWCRVAYIAH  77
           V GLV   VWAV L  GLV L +GH  VA AAL+V+V+APW  +A +AH
Sbjct  22  VLGLVAVGVWAVSLAIGLVELLLGHEGVAIAALLVSVIAPWLGLA-LAH  69


>gi|299753837|ref|XP_001833563.2| myosin 5 [Coprinopsis cinerea okayama7#130]
 gi|298410485|gb|EAU88108.2| myosin 5 [Coprinopsis cinerea okayama7#130]
Length=1636

 Score = 41.6 bits (96),  Expect = 0.041, Method: Composition-based stats.
 Identities = 29/101 (29%), Positives = 46/101 (46%), Gaps = 8/101 (7%)

Query  12   ASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAALVVAVMAPWCR  71
            AS+P P+G+G  P +V  P     +++   L+A +  L++ ++             PW  
Sbjct  664  ASSPLPTGAGKRPGAVKKP--TQGSIFKASLIALMETLSVTNVHYIRCIKPNEAKKPWEF  721

Query  72   VAYIAHGQHRVCG--ETLRGTPAGETASFPTGWRGLRFSTR  110
                  GQ R CG  ET+R + AG    +PT W    F+ R
Sbjct  722  QPQQVLGQLRACGVLETIRISCAG----YPTRWTYAEFAER  758


>gi|118463959|ref|YP_879722.1| hypothetical protein MAV_0438 [Mycobacterium avium 104]
 gi|118165246|gb|ABK66143.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=103

 Score = 35.4 bits (80),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 27/88 (31%), Positives = 39/88 (45%), Gaps = 0/88 (0%)

Query  1   MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  60
           M +  SD  DHA   +     +     NVPGL  +AV  V +  G+ A+  GHL   A A
Sbjct  1   MDHRNSDPVDHARTFRQHAGETFTYGANVPGLAGSAVAVVAMTVGVFAVAAGHLTGGAIA  60

Query  61  LVVAVMAPWCRVAYIAHGQHRVCGETLR  88
           L+VA +       ++     +V    LR
Sbjct  61  LIVAAVVGAVSAGWLLRTHRKVRDAELR  88


>gi|118472245|ref|YP_886149.1| UsfY protein [Mycobacterium smegmatis str. MC2 155]
 gi|118173532|gb|ABK74428.1| UsfY protein [Mycobacterium smegmatis str. MC2 155]
Length=101

 Score = 34.7 bits (78),  Expect = 5.4, Method: Compositional matrix adjust.
 Identities = 21/76 (28%), Positives = 33/76 (44%), Gaps = 5/76 (6%)

Query  4   TGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAV-----AA  58
           T  D  DHA   +P    ++  + N+P L++  +  V  V+ L A +  H  V       
Sbjct  4   TAKDPVDHARTTRPHAGETLKDTANIPALILLFLGGVSFVSCLFAFSTSHETVGIVLAVV  63

Query  59  AALVVAVMAPWCRVAY  74
           AAL+  V   W  V +
Sbjct  64  AALLFVVSGAWLVVEH  79


>gi|46202886|ref|ZP_00208699.1| COG1071: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase 
(E1) component, eukaryotic type, alpha subunit [Magnetospirillum 
magnetotacticum MS-1]
Length=332

 Score = 34.3 bits (77),  Expect = 5.5, Method: Compositional matrix adjust.
 Identities = 20/56 (36%), Positives = 26/56 (47%), Gaps = 0/56 (0%)

Query  37  VWAVGLVAGLVALTIGHLAVAAAALVVAVMAPWCRVAYIAHGQHRVCGETLRGTPA  92
           ++ +GL+ G   L IG  AV      VA  A  C  +Y  HG   VCG   +G  A
Sbjct  38  LYGMGLINGFCHLYIGQEAVVVGMQAVAGAADSCITSYRDHGHMLVCGMDPKGVMA  93


>gi|41406481|ref|NP_959317.1| hypothetical protein MAP0383 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41394830|gb|AAS02700.1| hypothetical protein MAP_0383 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=114

 Score = 34.3 bits (77),  Expect = 6.7, Method: Compositional matrix adjust.
 Identities = 21/62 (34%), Positives = 30/62 (49%), Gaps = 0/62 (0%)

Query  1   MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  60
           + +  SD  DHA   +     +     NVPGL  +AV  V +  G+ A+  GHL   A A
Sbjct  12  LDHRNSDPVDHARTFRQHAGETFTYGANVPGLAGSAVAVVAMTVGVFAVAAGHLTGGAIA  71

Query  61  LV  62
           L+
Sbjct  72  LI  73


>gi|254773444|ref|ZP_05214960.1| hypothetical protein MaviaA2_02031 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=105

 Score = 33.9 bits (76),  Expect = 7.3, Method: Compositional matrix adjust.
 Identities = 26/88 (30%), Positives = 39/88 (45%), Gaps = 0/88 (0%)

Query  1   MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  60
           + +  SD  DHA   +     +     NVPGL  +AV  V +  G+ A+  GHL   A A
Sbjct  3   LDHRNSDPVDHARTFRQHAGETFTYGANVPGLAGSAVAVVAMTVGVFAVAAGHLTGGAIA  62

Query  61  LVVAVMAPWCRVAYIAHGQHRVCGETLR  88
           L+VA +       ++     +V    LR
Sbjct  63  LIVAAVVGAVSAGWLLRTHRKVRDAELR  90


>gi|336460842|gb|EGO39727.1| hypothetical protein MAPs_36640 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=105

 Score = 33.9 bits (76),  Expect = 7.6, Method: Compositional matrix adjust.
 Identities = 21/62 (34%), Positives = 30/62 (49%), Gaps = 0/62 (0%)

Query  1   MVYTGSDAGDHASAPQPSGSGSVPASVNVPGLVVAAVWAVGLVAGLVALTIGHLAVAAAA  60
           + +  SD  DHA   +     +     NVPGL  +AV  V +  G+ A+  GHL   A A
Sbjct  3   LDHRNSDPVDHARTFRQHAGETFTYGANVPGLAGSAVAVVAMTVGVFAVAAGHLTGGAIA  62

Query  61  LV  62
           L+
Sbjct  63  LI  64


>gi|83311415|ref|YP_421679.1| pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase 
(E1) component [Magnetospirillum magneticum AMB-1]
 gi|82946256|dbj|BAE51120.1| Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase 
(E1) component [Magnetospirillum magneticum AMB-1]
Length=332

 Score = 33.9 bits (76),  Expect = 8.6, Method: Composition-based stats.
 Identities = 20/56 (36%), Positives = 26/56 (47%), Gaps = 0/56 (0%)

Query  37  VWAVGLVAGLVALTIGHLAVAAAALVVAVMAPWCRVAYIAHGQHRVCGETLRGTPA  92
           ++ +GL+ G   L IG  AV      VA  A  C  +Y  HG   VCG   +G  A
Sbjct  38  LYGMGLINGFCHLYIGQEAVVVGMQAVAGAADSCITSYRDHGHMLVCGMDPKGVMA  93



Lambda     K      H
   0.320    0.132    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129022162688


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40