BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3687c
Length=122
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610823|ref|NP_218204.1| anti-anti-sigma factor RSFB (anti-s... 236 1e-60
gi|254233184|ref|ZP_04926510.1| anti-anti-sigma factor rsfB [Myc... 233 6e-60
gi|298527162|ref|ZP_07014571.1| anti-anti-sigma factor [Mycobact... 201 4e-50
gi|240172555|ref|ZP_04751214.1| anti-anti-sigma regulatory facto... 184 3e-45
gi|183985150|ref|YP_001853441.1| anti-anti-sigma regulatory fact... 183 9e-45
gi|336460845|gb|EGO39730.1| anti-anti-sigma factor [Mycobacteriu... 176 1e-42
gi|41406478|ref|NP_959314.1| hypothetical protein MAP0380 [Mycob... 175 2e-42
gi|296166749|ref|ZP_06849173.1| anti-anti-sigma factor [Mycobact... 175 2e-42
gi|342861968|ref|ZP_08718612.1| hypothetical protein MCOL_23875 ... 163 8e-39
gi|118462796|ref|YP_879719.1| anti-anti-sigma factor [Mycobacter... 162 2e-38
gi|254820821|ref|ZP_05225822.1| hypothetical protein MintA_12883... 162 2e-38
gi|31794858|ref|NP_857351.1| hypothetical protein Mb3712c [Mycob... 160 8e-38
gi|296167181|ref|ZP_06849588.1| anti-anti-sigma factor [Mycobact... 95.9 2e-18
gi|41410407|ref|NP_963243.1| hypothetical protein MAP4309 [Mycob... 94.4 5e-18
gi|254777619|ref|ZP_05219135.1| anti-anti-sigma factor [Mycobact... 94.0 6e-18
gi|118463996|ref|YP_884384.1| anti-anti-sigma factor [Mycobacter... 93.6 1e-17
gi|240168822|ref|ZP_04747481.1| hypothetical protein MkanA1_0588... 93.2 1e-17
gi|54025393|ref|YP_119635.1| putative anti-anti-sigma factor [No... 93.2 1e-17
gi|254819434|ref|ZP_05224435.1| anti-anti-sigma factor [Mycobact... 90.5 7e-17
gi|342862311|ref|ZP_08718952.1| anti-anti-sigma factor [Mycobact... 90.1 1e-16
gi|302526682|ref|ZP_07279024.1| predicted protein [Streptomyces ... 85.9 2e-15
gi|118470980|ref|YP_890348.1| anti-anti-sigma factor [Mycobacter... 82.8 2e-14
gi|302526865|ref|ZP_07279207.1| predicted protein [Streptomyces ... 80.5 8e-14
gi|120403985|ref|YP_953814.1| anti-sigma-factor antagonist [Myco... 79.0 2e-13
gi|120405654|ref|YP_955483.1| anti-sigma-factor antagonist [Myco... 78.6 3e-13
gi|108802120|ref|YP_642317.1| anti-sigma-factor antagonist [Myco... 78.2 4e-13
gi|108799680|ref|YP_639877.1| anti-sigma-factor antagonist [Myco... 78.2 4e-13
gi|183980247|ref|YP_001848538.1| hypothetical protein MMAR_0214 ... 76.3 1e-12
gi|126435324|ref|YP_001071015.1| anti-sigma-factor antagonist [M... 73.9 6e-12
gi|300787742|ref|YP_003768033.1| anti-anti-sigma factor [Amycola... 73.6 1e-11
gi|119868790|ref|YP_938742.1| anti-sigma-factor antagonist [Myco... 72.8 1e-11
gi|145223871|ref|YP_001134549.1| anti-sigma-factor antagonist [M... 72.8 2e-11
gi|302526231|ref|ZP_07278573.1| predicted protein [Streptomyces ... 71.2 4e-11
gi|145222609|ref|YP_001133287.1| anti-sigma-factor antagonist [M... 71.2 5e-11
gi|120402490|ref|YP_952319.1| anti-sigma-factor antagonist [Myco... 66.2 1e-09
gi|291006470|ref|ZP_06564443.1| anti-sigma-factor antagonist [Sa... 65.9 2e-09
gi|300785103|ref|YP_003765394.1| anti-anti-sigma factor [Amycola... 65.1 3e-09
gi|300789248|ref|YP_003769539.1| anti-anti-sigma factor [Amycola... 64.7 4e-09
gi|300789416|ref|YP_003769707.1| anti-anti-sigma factor [Amycola... 64.3 5e-09
gi|134100727|ref|YP_001106388.1| anti-sigma-factor antagonist [S... 64.3 5e-09
gi|296170758|ref|ZP_06852330.1| anti-anti-sigma factor [Mycobact... 63.9 7e-09
gi|269125130|ref|YP_003298500.1| anti-sigma-factor antagonist [T... 63.5 9e-09
gi|54022119|ref|YP_116361.1| putative anti-anti-sigma factor [No... 63.5 1e-08
gi|312138389|ref|YP_004005725.1| anti sigma factor antagonist [R... 61.6 3e-08
gi|325674618|ref|ZP_08154305.1| anti-anti-sigma factor [Rhodococ... 61.6 3e-08
gi|145225514|ref|YP_001136192.1| anti-sigma-factor antagonist [M... 60.8 6e-08
gi|154150702|ref|YP_001404320.1| anti-sigma-factor antagonist [C... 60.5 9e-08
gi|331698015|ref|YP_004334254.1| sulfate transporter/antisigma-f... 58.5 3e-07
gi|256378441|ref|YP_003102101.1| anti-sigma-factor antagonist [A... 58.5 3e-07
gi|296268033|ref|YP_003650665.1| anti-sigma-factor antagonist [T... 58.2 4e-07
>gi|15610823|ref|NP_218204.1| anti-anti-sigma factor RSFB (anti-sigma factor antagonist) (regulator
of sigma F B) [Mycobacterium tuberculosis H37Rv]
gi|15843305|ref|NP_338342.1| anti-anti-sigma factor [Mycobacterium tuberculosis CDC1551]
gi|148663550|ref|YP_001285073.1| anti-anti-sigma factor RsfB [Mycobacterium tuberculosis H37Ra]
69 more sequence titles
Length=122
Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/122 (99%), Positives = 122/122 (100%), Gaps = 0/122 (0%)
Query 1 LSAPDSITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLG 60
+SAPDSITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLG
Sbjct 1 MSAPDSITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLG 60
Query 61 SVGLKILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGGRI 120
SVGLKILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGGRI
Sbjct 61 SVGLKILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGGRI 120
Query 121 DR 122
DR
Sbjct 121 DR 122
>gi|254233184|ref|ZP_04926510.1| anti-anti-sigma factor rsfB [Mycobacterium tuberculosis C]
gi|124602977|gb|EAY61252.1| anti-anti-sigma factor rsfB [Mycobacterium tuberculosis C]
Length=122
Score = 233 bits (594), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 120/122 (99%), Positives = 121/122 (99%), Gaps = 0/122 (0%)
Query 1 LSAPDSITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLG 60
+SAPDSITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLG
Sbjct 1 MSAPDSITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLG 60
Query 61 SVGLKILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGGRI 120
SVGLKILAATSEKIGQSVKFGVVARGSVTR PIHLMGLDKTFRLFSTLHDALTGVRGGRI
Sbjct 61 SVGLKILAATSEKIGQSVKFGVVARGSVTRTPIHLMGLDKTFRLFSTLHDALTGVRGGRI 120
Query 121 DR 122
DR
Sbjct 121 DR 122
>gi|298527162|ref|ZP_07014571.1| anti-anti-sigma factor [Mycobacterium tuberculosis 94_M4241A]
gi|298496956|gb|EFI32250.1| anti-anti-sigma factor [Mycobacterium tuberculosis 94_M4241A]
Length=104
Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/104 (99%), Positives = 104/104 (100%), Gaps = 0/104 (0%)
Query 19 VLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSV 78
+LSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSV
Sbjct 1 MLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSV 60
Query 79 KFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGGRIDR 122
KFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGGRIDR
Sbjct 61 KFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGGRIDR 104
>gi|240172555|ref|ZP_04751214.1| anti-anti-sigma regulatory factor [Mycobacterium kansasii ATCC
12478]
Length=122
Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/122 (76%), Positives = 105/122 (87%), Gaps = 0/122 (0%)
Query 1 LSAPDSITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLG 60
+S PDSIT V DH+GVAVLSIGGEIDL+TA ALEEAIG VVADNP+AL+IDLS VEFLG
Sbjct 1 MSTPDSITAEVTDHDGVAVLSIGGEIDLVTAPALEEAIGGVVADNPSALIIDLSGVEFLG 60
Query 61 SVGLKILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGGRI 120
SVGLKILAAT EK+G + +FGVVARG TRRPIHL GLDKTF L+ TL +ALTGVR G++
Sbjct 61 SVGLKILAATYEKLGSAAQFGVVARGPATRRPIHLTGLDKTFALYPTLDEALTGVRDGKL 120
Query 121 DR 122
+R
Sbjct 121 NR 122
>gi|183985150|ref|YP_001853441.1| anti-anti-sigma regulatory factor [Mycobacterium marinum M]
gi|183178476|gb|ACC43586.1| anti-anti-sigma regulatory factor [Mycobacterium marinum M]
Length=122
Score = 183 bits (464), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 92/122 (76%), Positives = 104/122 (86%), Gaps = 0/122 (0%)
Query 1 LSAPDSITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLG 60
+SAPDSIT V DH+GV VLSIGGEIDL+TA ALEEAIG VVAD+PTALVIDLS VEFLG
Sbjct 1 MSAPDSITAVVTDHDGVTVLSIGGEIDLVTAPALEEAIGAVVADSPTALVIDLSGVEFLG 60
Query 61 SVGLKILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGGRI 120
SVGLKILAAT EK+G + +FGVVA+G TRRPIHL GLDKTF L+ L DALTGVR G++
Sbjct 61 SVGLKILAATYEKLGTAAEFGVVAQGPATRRPIHLTGLDKTFPLYPALDDALTGVRDGKL 120
Query 121 DR 122
+R
Sbjct 121 NR 122
>gi|336460845|gb|EGO39730.1| anti-anti-sigma factor [Mycobacterium avium subsp. paratuberculosis
S397]
Length=122
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/121 (73%), Positives = 102/121 (85%), Gaps = 0/121 (0%)
Query 1 LSAPDSITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLG 60
+SAPDSIT V DH+GV+V+S+ GEIDL+TA ALE+AIG VVAD+P ALVIDLSAVEFLG
Sbjct 1 MSAPDSITTLVEDHDGVSVVSVSGEIDLVTAPALEQAIGAVVADSPPALVIDLSAVEFLG 60
Query 61 SVGLKILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGGRI 120
SVGLKILAAT EK+G+ FGVVARG TRRPIHL GLDKTF L+ TL DALT VR G++
Sbjct 61 SVGLKILAATYEKLGKETGFGVVARGPATRRPIHLTGLDKTFPLYPTLDDALTAVRDGKL 120
Query 121 D 121
+
Sbjct 121 N 121
>gi|41406478|ref|NP_959314.1| hypothetical protein MAP0380 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41394827|gb|AAS02697.1| hypothetical protein MAP_0380 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=122
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/121 (72%), Positives = 102/121 (85%), Gaps = 0/121 (0%)
Query 1 LSAPDSITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLG 60
+SAPDSIT V DH+GV+V+S+ GEID++TA ALE+AIG VVAD+P ALVIDLSAVEFLG
Sbjct 1 MSAPDSITTLVEDHDGVSVVSVSGEIDMVTAPALEQAIGAVVADSPPALVIDLSAVEFLG 60
Query 61 SVGLKILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGGRI 120
SVGLKILAAT EK+G+ FGVVARG TRRPIHL GLDKTF L+ TL DALT VR G++
Sbjct 61 SVGLKILAATYEKLGKETGFGVVARGPATRRPIHLTGLDKTFPLYPTLDDALTAVRDGKL 120
Query 121 D 121
+
Sbjct 121 N 121
>gi|296166749|ref|ZP_06849173.1| anti-anti-sigma factor [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295897919|gb|EFG77501.1| anti-anti-sigma factor [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=122
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/122 (73%), Positives = 99/122 (82%), Gaps = 0/122 (0%)
Query 1 LSAPDSITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLG 60
+SAPDSIT V DH+GV+V+S+ GEIDL+TA ALE+AIG VVADNP ALVIDLSAVEFLG
Sbjct 1 MSAPDSITTLVEDHDGVSVVSVSGEIDLVTAPALEQAIGAVVADNPAALVIDLSAVEFLG 60
Query 61 SVGLKILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGGRI 120
SVGLKILAAT EK+G + F VVARG TRRPIHL GLDKTF L+ TL DALT VR +
Sbjct 61 SVGLKILAATYEKLGNATGFAVVARGPATRRPIHLTGLDKTFPLYPTLDDALTAVRDDNV 120
Query 121 DR 122
R
Sbjct 121 SR 122
>gi|342861968|ref|ZP_08718612.1| hypothetical protein MCOL_23875 [Mycobacterium colombiense CECT
3035]
gi|342130508|gb|EGT83817.1| hypothetical protein MCOL_23875 [Mycobacterium colombiense CECT
3035]
Length=113
Score = 163 bits (412), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 81/111 (73%), Positives = 94/111 (85%), Gaps = 0/111 (0%)
Query 11 VADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAAT 70
V DH+GV+V+S+ GEIDL+TA ALE+AI VVAD+PTAL+IDLSAVEFLGSVGLKILAAT
Sbjct 2 VEDHDGVSVVSVSGEIDLVTAPALEQAISAVVADSPTALIIDLSAVEFLGSVGLKILAAT 61
Query 71 SEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGGRID 121
EK+G FGVVARG TRRPIHL GLDKTF L+ TL DALTGVR G+++
Sbjct 62 YEKLGNQTGFGVVARGPATRRPIHLTGLDKTFPLYPTLDDALTGVRDGKLN 112
>gi|118462796|ref|YP_879719.1| anti-anti-sigma factor [Mycobacterium avium 104]
gi|254773441|ref|ZP_05214957.1| hypothetical protein MaviaA2_02016 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118164083|gb|ABK64980.1| anti-anti-sigma factor [Mycobacterium avium 104]
Length=113
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/111 (73%), Positives = 94/111 (85%), Gaps = 0/111 (0%)
Query 11 VADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAAT 70
V DH+GV+V+S+ GEIDL+TA ALE+AIG VVAD+P ALVIDLSAVEFLGSVGLKILAAT
Sbjct 2 VEDHDGVSVVSVSGEIDLVTAPALEQAIGAVVADSPPALVIDLSAVEFLGSVGLKILAAT 61
Query 71 SEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGGRID 121
EK+G+ FGVVARG TRRPIHL GLDKTF L+ TL DALT VR G+++
Sbjct 62 YEKLGKETGFGVVARGPATRRPIHLTGLDKTFPLYPTLDDALTAVRDGKLN 112
>gi|254820821|ref|ZP_05225822.1| hypothetical protein MintA_12883 [Mycobacterium intracellulare
ATCC 13950]
Length=113
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/111 (73%), Positives = 95/111 (86%), Gaps = 0/111 (0%)
Query 11 VADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAAT 70
V DH+GV+V+S+ GEIDL+TA ALE+AIG VVA++PTALVIDLSAVEFLGSVGLKILAAT
Sbjct 2 VEDHDGVSVVSVSGEIDLVTAPALEQAIGAVVAESPTALVIDLSAVEFLGSVGLKILAAT 61
Query 71 SEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGGRID 121
EK+G+ FGVVARG TRRPIHL GLDKTF L+ TL DALT VR G+++
Sbjct 62 YEKLGKDTGFGVVARGPATRRPIHLTGLDKTFPLYPTLDDALTAVRDGKLN 112
>gi|31794858|ref|NP_857351.1| hypothetical protein Mb3712c [Mycobacterium bovis AF2122/97]
gi|121639601|ref|YP_979825.1| hypothetical protein BCG_3746c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224992097|ref|YP_002646786.1| hypothetical protein JTY_3747 [Mycobacterium bovis BCG str. Tokyo
172]
gi|31620455|emb|CAD95898.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121495249|emb|CAL73735.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224775212|dbj|BAH28018.1| hypothetical protein JTY_3747 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341603622|emb|CCC66303.1| conserved hypothetical protein [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=81
Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 80/81 (99%), Positives = 81/81 (100%), Gaps = 0/81 (0%)
Query 42 VADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKT 101
+ADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKT
Sbjct 1 MADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKT 60
Query 102 FRLFSTLHDALTGVRGGRIDR 122
FRLFSTLHDALTGVRGGRIDR
Sbjct 61 FRLFSTLHDALTGVRGGRIDR 81
>gi|296167181|ref|ZP_06849588.1| anti-anti-sigma factor [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295897503|gb|EFG77102.1| anti-anti-sigma factor [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=125
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 64/100 (64%), Gaps = 0/100 (0%)
Query 19 VLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSV 78
VL++ GE+D++++ L EAI +A P AL++DLS V FL S G+ +L +
Sbjct 26 VLTVSGEVDMLSSPHLAEAIQTALATKPAALIVDLSKVNFLASAGMTVLVTAQAETEAPT 85
Query 79 KFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGG 118
+F VVA GS T RPI LMG+D L+S+L DAL+G+ GG
Sbjct 86 QFAVVANGSATSRPIKLMGIDSVLALYSSLDDALSGIAGG 125
>gi|41410407|ref|NP_963243.1| hypothetical protein MAP4309 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41399241|gb|AAS06859.1| hypothetical protein MAP_4309 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=110
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 64/100 (64%), Gaps = 0/100 (0%)
Query 19 VLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSV 78
VL++ GE+D++++ L EAI +A P AL++DLS V FL S G+ +L T ++
Sbjct 11 VLTVSGEVDMLSSPMLAEAIQTALAAKPAALIVDLSKVGFLASAGMTVLVTTQAELQPPT 70
Query 79 KFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGG 118
KF VVA GS T RPI LMG+D L+ +L+DAL+ + G
Sbjct 71 KFAVVADGSATSRPIKLMGIDSVLSLYPSLNDALSALSGA 110
>gi|254777619|ref|ZP_05219135.1| anti-anti-sigma factor [Mycobacterium avium subsp. avium ATCC
25291]
gi|336459853|gb|EGO38766.1| anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
[Mycobacterium avium subsp. paratuberculosis S397]
Length=125
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 64/100 (64%), Gaps = 0/100 (0%)
Query 19 VLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSV 78
VL++ GE+D++++ L EAI +A P AL++DLS V FL S G+ +L T ++
Sbjct 26 VLTVSGEVDMLSSPMLAEAIQTALAAKPAALIVDLSKVGFLASAGMTVLVTTQAELQPPT 85
Query 79 KFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGG 118
KF VVA GS T RPI LMG+D L+ +L+DAL+ + G
Sbjct 86 KFAVVADGSATSRPIKLMGIDSVLSLYPSLNDALSALSGA 125
>gi|118463996|ref|YP_884384.1| anti-anti-sigma factor [Mycobacterium avium 104]
gi|118165283|gb|ABK66180.1| anti-anti-sigma factor [Mycobacterium avium 104]
Length=125
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 0/100 (0%)
Query 19 VLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSV 78
VL++ GE+D++++ L EA+ +A P AL++DLS V FL S G+ +L T ++
Sbjct 26 VLTVSGEVDMLSSPMLAEAVQTALAAKPAALIVDLSKVGFLASAGMTVLVTTQAELQPPT 85
Query 79 KFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGG 118
KF VVA GS T RPI LMG+D L+ +L+DAL+ + G
Sbjct 86 KFAVVADGSATSRPIKLMGIDSVLSLYPSLNDALSALSGA 125
>gi|240168822|ref|ZP_04747481.1| hypothetical protein MkanA1_05885 [Mycobacterium kansasii ATCC
12478]
Length=125
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/106 (45%), Positives = 66/106 (63%), Gaps = 2/106 (1%)
Query 12 ADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATS 71
ADH VL++ GE+D++TA L EAI +A P AL++DLS V+FL S G+ +L +
Sbjct 21 ADH--AVVLAVSGEVDMLTAPQLAEAIQTALAAGPPALIVDLSKVDFLASAGMTVLVTAN 78
Query 72 EKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRG 117
++ +F VVA G T RPI LMG+D F L+ TL AL+ + G
Sbjct 79 AQVVAPTRFAVVADGPATSRPIKLMGIDSVFPLYLTLDSALSSLAG 124
>gi|54025393|ref|YP_119635.1| putative anti-anti-sigma factor [Nocardia farcinica IFM 10152]
gi|54016901|dbj|BAD58271.1| putative anti-anti-sigma factor [Nocardia farcinica IFM 10152]
Length=112
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/112 (45%), Positives = 68/112 (61%), Gaps = 0/112 (0%)
Query 7 ITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKI 66
+T +VA H+G VL++ GE+DL TA ALE AI V+ + P AL+IDL+ V FL S G+
Sbjct 1 MTTSVAVHDGATVLTVAGEVDLATAPALENAIEGVLGEKPAALIIDLTRVSFLASAGMAA 60
Query 67 LAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGG 118
L A ++ G + VVA G T R + + LD+ F L+STL AL V G
Sbjct 61 LVAAHQRAGAATTIAVVADGPATSRQLKMTSLDQVFALYSTLDAALAAVGKG 112
>gi|254819434|ref|ZP_05224435.1| anti-anti-sigma factor [Mycobacterium intracellulare ATCC 13950]
Length=125
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/99 (44%), Positives = 63/99 (64%), Gaps = 0/99 (0%)
Query 19 VLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSV 78
VL++ GE+D++++ L +AI +A P AL++DLS V FL S G+ +L ++
Sbjct 26 VLTVSGEVDMLSSPQLADAIQTALATKPAALIVDLSKVGFLASAGMTVLVTAQAEVEPPT 85
Query 79 KFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRG 117
KF VVA GS T RPI LMG+D L+S+L AL+G+ G
Sbjct 86 KFAVVANGSATSRPIKLMGIDSVLALYSSLDGALSGIAG 124
>gi|342862311|ref|ZP_08718952.1| anti-anti-sigma factor [Mycobacterium colombiense CECT 3035]
gi|342130168|gb|EGT83496.1| anti-anti-sigma factor [Mycobacterium colombiense CECT 3035]
Length=125
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/99 (45%), Positives = 63/99 (64%), Gaps = 0/99 (0%)
Query 19 VLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSV 78
VL++ GE+D++++ L +AI +A P AL++DLS V FL S G+ +L +I
Sbjct 26 VLTVSGEVDMLSSPLLADAIQTALATKPAALIVDLSKVGFLASAGMTVLVTAQAEIEPPT 85
Query 79 KFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRG 117
+F VVA GS T RPI LMG+D L+STL AL+G+ G
Sbjct 86 QFAVVANGSATSRPIKLMGIDSVLSLYSTLDGALSGLAG 124
>gi|302526682|ref|ZP_07279024.1| predicted protein [Streptomyces sp. AA4]
gi|302435577|gb|EFL07393.1| predicted protein [Streptomyces sp. AA4]
Length=186
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/109 (41%), Positives = 66/109 (61%), Gaps = 0/109 (0%)
Query 4 PDSITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVG 63
P S+++ AD + AVL++ G++DL TA L A+ E V P LV+DL+ V+FL S G
Sbjct 75 PGSLSIERADRSPAAVLALNGDLDLGTAPKLTAAVAETVTGKPPVLVLDLAGVDFLASAG 134
Query 64 LKILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDAL 112
L +L A + + + +VA G T RPI L GL+++ L+ TL +AL
Sbjct 135 LTVLLAACREAPEGTEVRIVASGRATLRPIQLTGLEQSLPLYPTLEEAL 183
>gi|118470980|ref|YP_890348.1| anti-anti-sigma factor [Mycobacterium smegmatis str. MC2 155]
gi|118172267|gb|ABK73163.1| anti-anti-sigma factor [Mycobacterium smegmatis str. MC2 155]
Length=119
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/113 (39%), Positives = 70/113 (62%), Gaps = 0/113 (0%)
Query 4 PDSITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVG 63
P + TV + V+++ G +D++TA LE+AIG P+A+V+DLSAV+FL S G
Sbjct 6 PANCTVEERRVGDITVVAVTGTVDMLTAPKLEDAIGSAAKSEPSAVVVDLSAVDFLASAG 65
Query 64 LKILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVR 116
+ +L A ++ +V+ VVA G T RP+ L+G+ LF+TL +AL+ ++
Sbjct 66 MGVLVAAHGELAPAVRLVVVADGPATSRPLKLVGIADVVDLFATLDEALSSLK 118
>gi|302526865|ref|ZP_07279207.1| predicted protein [Streptomyces sp. AA4]
gi|302435760|gb|EFL07576.1| predicted protein [Streptomyces sp. AA4]
Length=147
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/102 (42%), Positives = 59/102 (58%), Gaps = 0/102 (0%)
Query 13 DHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSE 72
D AVL++ GE+D++TA L A+ E +A P +V+DL+AVEFL S GL L ++
Sbjct 45 DRPPAAVLAVYGEVDMVTAPRLTAAVDEALAGAPPVVVLDLAAVEFLASAGLTALVTMTQ 104
Query 73 KIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTG 114
+VA G T RPI L GL++T L+ T+ AL G
Sbjct 105 HRPSGPSVRIVASGRATMRPIQLTGLERTLPLYPTVEAALAG 146
>gi|120403985|ref|YP_953814.1| anti-sigma-factor antagonist [Mycobacterium vanbaalenii PYR-1]
gi|119956803|gb|ABM13808.1| anti-sigma-factor antagonist [Mycobacterium vanbaalenii PYR-1]
Length=130
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/95 (42%), Positives = 58/95 (62%), Gaps = 0/95 (0%)
Query 18 AVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQS 77
AV+++ G +D++T+ LE AI ++ P A+VID + VEFL S G+ +L A +K G
Sbjct 31 AVVAVSGVVDMLTSPQLESAIDTALSQQPAAVVIDFTDVEFLASAGMGVLVAAHDKAGSD 90
Query 78 VKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDAL 112
VK VVA G T RP+ L+G+ L+ L +AL
Sbjct 91 VKISVVAEGPATSRPLKLVGIADIVALYPNLEEAL 125
>gi|120405654|ref|YP_955483.1| anti-sigma-factor antagonist [Mycobacterium vanbaalenii PYR-1]
gi|119958472|gb|ABM15477.1| anti-sigma-factor antagonist [Mycobacterium vanbaalenii PYR-1]
Length=112
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/91 (44%), Positives = 58/91 (64%), Gaps = 0/91 (0%)
Query 27 DLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSVKFGVVARG 86
D++TA L+EAI + PT +V+DL+AV+FLGS G+++L T ++ +VKF VVA G
Sbjct 22 DMLTAPQLQEAINAALDRQPTGVVVDLTAVDFLGSAGMQVLMTTRRQLEGTVKFAVVADG 81
Query 87 SVTRRPIHLMGLDKTFRLFSTLHDALTGVRG 117
T RP+ + G+ LFSTL AL + G
Sbjct 82 PATSRPLKITGIADYVDLFSTLDVALRNLAG 112
>gi|108802120|ref|YP_642317.1| anti-sigma-factor antagonist [Mycobacterium sp. MCS]
gi|119871273|ref|YP_941225.1| anti-sigma-factor antagonist [Mycobacterium sp. KMS]
gi|126438101|ref|YP_001073792.1| anti-sigma-factor antagonist [Mycobacterium sp. JLS]
gi|108772539|gb|ABG11261.1| anti-sigma-factor antagonist [Mycobacterium sp. MCS]
gi|119697362|gb|ABL94435.1| anti-sigma-factor antagonist [Mycobacterium sp. KMS]
gi|126237901|gb|ABO01302.1| anti-sigma-factor antagonist [Mycobacterium sp. JLS]
Length=115
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 57/100 (57%), Gaps = 0/100 (0%)
Query 14 HNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEK 73
H VAV+ G +D++TA LE AI PT L++DLS EFL S G+++L T E+
Sbjct 12 HGRVAVIRATGAVDMLTAPHLEIAIRAAREKRPTGLIVDLSDAEFLSSAGMQVLVTTHEE 71
Query 74 IGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALT 113
+ +F VVA G T RP+ + GL LFSTL AL
Sbjct 72 LTPGARFAVVAEGPGTSRPLKITGLTDFIELFSTLDAALN 111
>gi|108799680|ref|YP_639877.1| anti-sigma-factor antagonist [Mycobacterium sp. MCS]
gi|108770099|gb|ABG08821.1| anti-sigma-factor antagonist [Mycobacterium sp. MCS]
Length=99
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/97 (41%), Positives = 61/97 (63%), Gaps = 0/97 (0%)
Query 19 VLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSV 78
++S+ G +D++TA LE+AI +A P LV+D SAVEFL S G+ IL A +++ V
Sbjct 1 MVSVAGVVDMLTAPQLEQAIRAGLAKEPAGLVVDFSAVEFLASAGMGILVAIHDELSSGV 60
Query 79 KFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGV 115
F VVA G T RP+ L+G+ L++++ +AL +
Sbjct 61 TFCVVAEGPATSRPLKLLGIADIIPLYASVDEALAAL 97
>gi|183980247|ref|YP_001848538.1| hypothetical protein MMAR_0214 [Mycobacterium marinum M]
gi|183173573|gb|ACC38683.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=125
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/97 (39%), Positives = 57/97 (59%), Gaps = 0/97 (0%)
Query 19 VLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSV 78
V+++ GE+D++TA L E + + + P L++DLS V+FL S G+ +L + +
Sbjct 26 VVTVSGELDMLTAPRLAEMLRTSLIEAPATLIVDLSKVDFLASAGMTVLVSAKAQAVAPT 85
Query 79 KFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGV 115
+F VVA G T RPI LMG+D L+ L DAL +
Sbjct 86 RFVVVADGPATSRPIRLMGIDAMLPLYDALDDALNDI 122
>gi|126435324|ref|YP_001071015.1| anti-sigma-factor antagonist [Mycobacterium sp. JLS]
gi|126235124|gb|ABN98524.1| anti-sigma-factor antagonist [Mycobacterium sp. JLS]
Length=159
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/89 (43%), Positives = 55/89 (62%), Gaps = 0/89 (0%)
Query 27 DLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSVKFGVVARG 86
D++TA LE+AI +A P LV+D SAVEFL S G+ IL A ++I V F VVA G
Sbjct 69 DMLTAPQLEQAIRAGLAKEPAGLVVDFSAVEFLASAGMGILVAIHDEISSGVTFCVVAEG 128
Query 87 SVTRRPIHLMGLDKTFRLFSTLHDALTGV 115
T RP+ L+G+ L++++ +AL +
Sbjct 129 PATSRPLKLLGIADIIPLYASVDEALAAL 157
>gi|300787742|ref|YP_003768033.1| anti-anti-sigma factor [Amycolatopsis mediterranei U32]
gi|299797256|gb|ADJ47631.1| anti-anti-sigma factor [Amycolatopsis mediterranei U32]
gi|340529310|gb|AEK44515.1| anti-anti-sigma factor [Amycolatopsis mediterranei S699]
Length=127
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/96 (43%), Positives = 53/96 (56%), Gaps = 0/96 (0%)
Query 19 VLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSV 78
V+ + G++D TA AL +A E +A+ P LV+DLS VEFL S GL L G
Sbjct 31 VVEVAGDVDTTTAPALVQAADEALAEQPPVLVVDLSRVEFLASPGLTALLTIHRNAGTGT 90
Query 79 KFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTG 114
+VA G T RPI L GL+++ LF T AL G
Sbjct 91 AVRIVASGRATLRPIQLTGLEESLSLFPTREAALAG 126
>gi|119868790|ref|YP_938742.1| anti-sigma-factor antagonist [Mycobacterium sp. KMS]
gi|119694879|gb|ABL91952.1| anti-sigma-factor antagonist [Mycobacterium sp. KMS]
Length=159
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/89 (42%), Positives = 55/89 (62%), Gaps = 0/89 (0%)
Query 27 DLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSVKFGVVARG 86
D++TA LE+AI +A P LV+D SAVEFL S G+ IL A +++ V F VVA G
Sbjct 69 DMLTAPQLEQAIRAGLAKEPAGLVVDFSAVEFLASAGMGILVAIHDELSSGVTFCVVAEG 128
Query 87 SVTRRPIHLMGLDKTFRLFSTLHDALTGV 115
T RP+ L+G+ L++++ +AL +
Sbjct 129 PATSRPLKLLGIADIIPLYASVDEALAAL 157
>gi|145223871|ref|YP_001134549.1| anti-sigma-factor antagonist [Mycobacterium gilvum PYR-GCK]
gi|315444200|ref|YP_004077079.1| anti-anti-sigma factor [Mycobacterium sp. Spyr1]
gi|145216357|gb|ABP45761.1| anti-sigma-factor antagonist [Mycobacterium gilvum PYR-GCK]
gi|315262503|gb|ADT99244.1| anti-anti-sigma factor [Mycobacterium sp. Spyr1]
Length=129
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/86 (44%), Positives = 52/86 (61%), Gaps = 0/86 (0%)
Query 27 DLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIGQSVKFGVVARG 86
D++T+ LE AI + + P A+VID + VEFL S G+ +L A +K G VK VVA G
Sbjct 39 DMLTSPQLETAIDDALNQKPGAVVIDFTEVEFLASAGMGVLVAAHDKAGSEVKISVVADG 98
Query 87 SVTRRPIHLMGLDKTFRLFSTLHDAL 112
T RP+ L+G+ L+S L +AL
Sbjct 99 PATSRPLKLVGIADIVALYSNLDEAL 124
>gi|302526231|ref|ZP_07278573.1| predicted protein [Streptomyces sp. AA4]
gi|302435126|gb|EFL06942.1| predicted protein [Streptomyces sp. AA4]
Length=139
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/102 (42%), Positives = 61/102 (60%), Gaps = 1/102 (0%)
Query 7 ITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKI 66
+ V+V AV+++GGEIDL+TA L E +G V+ P LV+DL AV+FL S GL++
Sbjct 27 LEVSVRWRGPAAVVTVGGEIDLVTAPELGEFVGGVLEREPGVLVVDLRAVDFLSSSGLQV 86
Query 67 LAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTL 108
LA K+ + VV+ +VT RP GLD+ LF ++
Sbjct 87 LAGAHRKL-DAGALRVVSTSTVTSRPFTTTGLDEWIALFPSV 127
>gi|145222609|ref|YP_001133287.1| anti-sigma-factor antagonist [Mycobacterium gilvum PYR-GCK]
gi|315443074|ref|YP_004075953.1| anti-anti-sigma factor [Mycobacterium sp. Spyr1]
gi|145215095|gb|ABP44499.1| anti-sigma-factor antagonist [Mycobacterium gilvum PYR-GCK]
gi|315261377|gb|ADT98118.1| anti-anti-sigma factor [Mycobacterium sp. Spyr1]
Length=112
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/103 (36%), Positives = 62/103 (61%), Gaps = 0/103 (0%)
Query 15 NGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKI 74
+GV +++ G ID++TA L+EA+ P+ LV+DL++V+FLGS G+++L T + +
Sbjct 10 DGVVIVAAVGAIDMLTAPQLQEAVAAAARRRPSGLVVDLTSVDFLGSAGMQVLMETRKGL 69
Query 75 GQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRG 117
+F VVA G T RP+ + G+ L+ +L AL + G
Sbjct 70 DGDTRFAVVADGPATSRPLKITGITDYVDLYPSLDVALADLAG 112
>gi|120402490|ref|YP_952319.1| anti-sigma-factor antagonist [Mycobacterium vanbaalenii PYR-1]
gi|119955308|gb|ABM12313.1| anti-sigma-factor antagonist [Mycobacterium vanbaalenii PYR-1]
Length=128
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/109 (37%), Positives = 60/109 (56%), Gaps = 2/109 (1%)
Query 13 DHNGVA-VLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATS 71
D G A VL + G++D +TA L + +AD P +V+D++ VEFL S G+ +L T
Sbjct 17 DRQGAALVLRVTGDLDAMTAPTLVTHLDIALADAPPVVVVDMTDVEFLSSAGISVLVETH 76
Query 72 EKIGQS-VKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVRGGR 119
++ + VVA G T RP +M LD+ L+ TL DA+ + GR
Sbjct 77 RLAERADISLRVVADGPATSRPFRMMRLDEVIDLYPTLADAMGERQQGR 125
>gi|291006470|ref|ZP_06564443.1| anti-sigma-factor antagonist [Saccharopolyspora erythraea NRRL
2338]
Length=113
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/107 (33%), Positives = 58/107 (55%), Gaps = 0/107 (0%)
Query 6 SITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLK 65
++ +V VAVLS+ G++D++TA +E+ + ++ P LV+DL+ V F S GL
Sbjct 6 QVSTSVGWREKVAVLSVSGDVDMVTAPQVEQDLAALLEQQPEVLVVDLTEVGFFASAGLT 65
Query 66 ILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDAL 112
L A ++ VVA S T RP+ + LD+ +F ++ AL
Sbjct 66 ALVAAYKQAEGRTGLRVVATSSATVRPLKVTALDRKIPVFDSVEAAL 112
>gi|300785103|ref|YP_003765394.1| anti-anti-sigma factor [Amycolatopsis mediterranei U32]
gi|299794617|gb|ADJ44992.1| anti-anti-sigma factor [Amycolatopsis mediterranei U32]
gi|340526538|gb|AEK41743.1| anti-anti-sigma factor [Amycolatopsis mediterranei S699]
Length=139
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/110 (36%), Positives = 61/110 (56%), Gaps = 1/110 (0%)
Query 4 PDSITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVG 63
P ++T+TV +++I GEIDL + L +GE + P ALV+DL V F G+ G
Sbjct 15 PSAMTLTVTATAEATIVAIRGEIDLPVLSRLRTRLGEEIDLAPRALVLDLPEVSFCGAGG 74
Query 64 L-KILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDAL 112
+ ++L A SE V F + A G RRPI ++GL++ + ++ AL
Sbjct 75 ITELLVAASEAHVSGVPFAIAAAGRAVRRPIRVLGLERLLPIHESVEAAL 124
>gi|300789248|ref|YP_003769539.1| anti-anti-sigma factor [Amycolatopsis mediterranei U32]
gi|299798762|gb|ADJ49137.1| anti-anti-sigma factor [Amycolatopsis mediterranei U32]
gi|340530893|gb|AEK46098.1| anti-anti-sigma factor [Amycolatopsis mediterranei S699]
Length=123
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/109 (37%), Positives = 59/109 (55%), Gaps = 1/109 (0%)
Query 5 DSITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGL 64
D + VT G VL++ GEIDL++A L + + +A+ P LVIDLS V FL S+G+
Sbjct 14 DLLRVTAQHSGGTVVLAVAGEIDLLSAPVLGDGVTTALAEAPDLLVIDLSEVSFLASIGI 73
Query 65 KILAATSEKIGQSVKFGVVA-RGSVTRRPIHLMGLDKTFRLFSTLHDAL 112
+L + G + VVA G V R + L GL + + ++ DAL
Sbjct 74 TVLLEARREAGAGTRVRVVAPEGGVVNRTLQLTGLHEALAVATSRDDAL 122
>gi|300789416|ref|YP_003769707.1| anti-anti-sigma factor [Amycolatopsis mediterranei U32]
gi|299798930|gb|ADJ49305.1| anti-anti-sigma factor [Amycolatopsis mediterranei U32]
gi|340531064|gb|AEK46269.1| anti-anti-sigma factor [Amycolatopsis mediterranei S699]
Length=111
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/107 (37%), Positives = 58/107 (55%), Gaps = 1/107 (0%)
Query 6 SITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLK 65
+ VT+ + AVL++ GEIDL++A E + V+A P LV+DL V F S GL+
Sbjct 5 ELAVTLDWRDRAAVLAVAGEIDLVSAPEFGEVVDVVLAREPEKLVVDLREVTFFCSAGLQ 64
Query 66 ILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDAL 112
+LAA K+ + VV+ VT P+ GLD + T+ +AL
Sbjct 65 VLAAAHRKLAER-ALCVVSDSPVTSGPLKTTGLDTWIGVHPTVDEAL 110
>gi|134100727|ref|YP_001106388.1| anti-sigma-factor antagonist [Saccharopolyspora erythraea NRRL
2338]
gi|133913350|emb|CAM03463.1| anti-sigma-factor antagonist [Saccharopolyspora erythraea NRRL
2338]
Length=103
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/99 (35%), Positives = 54/99 (55%), Gaps = 0/99 (0%)
Query 14 HNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEK 73
VAVLS+ G++D++TA +E+ + ++ P LV+DL+ V F S GL L A ++
Sbjct 4 REKVAVLSVSGDVDMVTAPQVEQDLAALLEQQPEVLVVDLTEVGFFASAGLTALVAAYKQ 63
Query 74 IGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDAL 112
VVA S T RP+ + LD+ +F ++ AL
Sbjct 64 AEGRTGLRVVATSSATVRPLKVTALDRKIPVFDSVEAAL 102
>gi|296170758|ref|ZP_06852330.1| anti-anti-sigma factor [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894573|gb|EFG74310.1| anti-anti-sigma factor [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=116
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/107 (38%), Positives = 57/107 (54%), Gaps = 1/107 (0%)
Query 9 VTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILA 68
VT D VL + G +D+ITA +L I ++ P LVIDL+ V+FL S G+ +L
Sbjct 7 VTRRDAGDAVVLQVNGVVDIITAPSLATHIDVALSGTPAVLVIDLTEVDFLSSAGITVLV 66
Query 69 ATSEKIGQS-VKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTG 114
S V A GS T RP+ ++GLD+ L+ T+ +AL G
Sbjct 67 EVHRLTENSPTSLRVAADGSATSRPLRIVGLDEFIDLYPTVAEALDG 113
>gi|269125130|ref|YP_003298500.1| anti-sigma-factor antagonist [Thermomonospora curvata DSM 43183]
gi|268310088|gb|ACY96462.1| anti-sigma-factor antagonist [Thermomonospora curvata DSM 43183]
Length=120
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/103 (35%), Positives = 54/103 (53%), Gaps = 1/103 (0%)
Query 15 NGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKI 74
NGV ++ + GEID+ ++ L E + +V+ P LV+DLS V FL S GL +L ++
Sbjct 11 NGVNIVKVSGEIDVFSSPRLREMLLDVIDKGPLRLVVDLSDVTFLDSTGLGVLVGIYHRL 70
Query 75 -GQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGVR 116
++ V RR H+ L K F L+ TL +AL R
Sbjct 71 RARNGSMSFVGANDRVRRVFHITQLTKIFSLYDTLEEALAAER 113
>gi|54022119|ref|YP_116361.1| putative anti-anti-sigma factor [Nocardia farcinica IFM 10152]
gi|54013627|dbj|BAD54997.1| putative anti-anti-sigma factor [Nocardia farcinica IFM 10152]
Length=121
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/107 (41%), Positives = 60/107 (57%), Gaps = 5/107 (4%)
Query 7 ITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVV-ADNPTALVIDLSAVEFLGSVGLK 65
+ V V NG ++++ GE+D+ +A L+ A+ + NP LV+D+S V FLGS GL
Sbjct 10 LDVQVRSENGTEIVTVHGEVDMASAPQLQAALEDAQRGGNP--LVVDMSDVGFLGSAGLS 67
Query 66 ILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDAL 112
L SE Q + VVA +V RRPI L LDK ++ TL AL
Sbjct 68 ALLVVSEA-AQPQRLRVVASDAV-RRPIELTALDKLLAVYDTLDAAL 112
>gi|312138389|ref|YP_004005725.1| anti sigma factor antagonist [Rhodococcus equi 103S]
gi|311887728|emb|CBH47040.1| putative anti sigma factor antagonist [Rhodococcus equi 103S]
Length=119
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/116 (38%), Positives = 62/116 (54%), Gaps = 2/116 (1%)
Query 2 SAPDS-ITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVAD-NPTALVIDLSAVEFL 59
SA DS +++ V GV VL GEID++TA EEA+ + L++DLS V FL
Sbjct 4 SAADSALSLDVDVIEGVVVLRARGEIDVLTAQMFEEALDRAASRLKDGVLIVDLSEVAFL 63
Query 60 GSVGLKILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGV 115
S GL +L S+ I +F V A G T RP+ L GL + + ++ AL+ V
Sbjct 64 ASAGLAVLVRCSDDIPAGNRFIVAAHGPATVRPLELTGLTEVLEVHPSVEAALSTV 119
>gi|325674618|ref|ZP_08154305.1| anti-anti-sigma factor [Rhodococcus equi ATCC 33707]
gi|325554204|gb|EGD23879.1| anti-anti-sigma factor [Rhodococcus equi ATCC 33707]
Length=121
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/116 (38%), Positives = 62/116 (54%), Gaps = 2/116 (1%)
Query 2 SAPDS-ITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVAD-NPTALVIDLSAVEFL 59
SA DS +++ V GV VL GEID++TA EEA+ + L++DLS V FL
Sbjct 6 SAADSALSLDVDVIEGVVVLRARGEIDVLTAQMFEEALDRAASRLKDGVLIVDLSEVAFL 65
Query 60 GSVGLKILAATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGV 115
S GL +L S+ I +F V A G T RP+ L GL + + ++ AL+ V
Sbjct 66 ASAGLAVLVRCSDDIPAGNRFIVAAHGPATVRPLELTGLTEVLEVHPSVEAALSTV 121
>gi|145225514|ref|YP_001136192.1| anti-sigma-factor antagonist [Mycobacterium gilvum PYR-GCK]
gi|315445867|ref|YP_004078746.1| anti-anti-sigma factor [Mycobacterium sp. Spyr1]
gi|145218000|gb|ABP47404.1| anti-sigma-factor antagonist [Mycobacterium gilvum PYR-GCK]
gi|315264170|gb|ADU00912.1| anti-anti-sigma factor [Mycobacterium sp. Spyr1]
Length=125
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/110 (35%), Positives = 64/110 (59%), Gaps = 5/110 (4%)
Query 8 TVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKIL 67
TVT + VL + G++D++TA L + +AD P +++D+S V FL S G+ +L
Sbjct 15 TVTPRRDGDLLVLHVTGDLDVLTAPTLSTHLDIALADAPPVVIVDISDVSFLSSAGIGLL 74
Query 68 AAT---SEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTG 114
T +E+ G S++ VVA G+ T RP+ +M +D+ L++T +A G
Sbjct 75 VETHRLTERGGISLR--VVADGAATSRPLRMMRIDEVIDLYATTDEAKAG 122
>gi|154150702|ref|YP_001404320.1| anti-sigma-factor antagonist [Candidatus Methanoregula boonei
6A8]
gi|153999254|gb|ABS55677.1| anti-sigma-factor antagonist [Methanoregula boonei 6A8]
Length=121
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/111 (32%), Positives = 62/111 (56%), Gaps = 1/111 (0%)
Query 6 SITVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLK 65
+ T+TVA H+ A+LS+ G ID TA E AI + +++DLS + ++ S GL+
Sbjct 7 TFTLTVAKHDTAAILSVKGRIDATTAGEFEGAINSHIGMGERQIILDLSGLAYISSGGLR 66
Query 66 ILAATSEKI-GQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGV 115
+L AT++K+ +F + ++ ++L G F +++T+ DAL V
Sbjct 67 VLLATAKKLHSNGDRFVLCGLSVEVQKVMNLAGFTTIFSIYATVSDALAAV 117
>gi|331698015|ref|YP_004334254.1| sulfate transporter/antisigma-factor antagonist STAS [Pseudonocardia
dioxanivorans CB1190]
gi|326952704|gb|AEA26401.1| Sulfate transporter/antisigma-factor antagonist STAS [Pseudonocardia
dioxanivorans CB1190]
Length=123
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/105 (39%), Positives = 51/105 (49%), Gaps = 0/105 (0%)
Query 8 TVTVADHNGVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKIL 67
+V + + G VL + G +DL A L + V P LVIDLSA FL SVG+ L
Sbjct 16 SVRLHEVPGGVVLVVTGPLDLSLAPRLRREVLRAVRLRPATLVIDLSASTFLASVGMAEL 75
Query 68 AATSEKIGQSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDAL 112
G V +VA G + RP+ L L + STLHDAL
Sbjct 76 VRAHRTAGAGVTVRIVAAGPLLLRPLELTRLTDELEIRSTLHDAL 120
>gi|256378441|ref|YP_003102101.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
gi|255922744|gb|ACU38255.1| anti-sigma-factor antagonist [Actinosynnema mirum DSM 43827]
Length=127
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query 19 VLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATS---EKIG 75
V+ + GE+D T L + + V+ P+ALV+DL AV F + GL +L AT+ E++G
Sbjct 18 VVRVSGELDASTTGPLRARLLDEVSRAPSALVVDLGAVTFCSAAGLSLLLATTADAERLG 77
Query 76 QSVKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDALTGV 115
V + VV RRP+ GLD RL + ALT +
Sbjct 78 --VPWAVVGAQRAVRRPVTAAGLDAVLRLRDDVASALTAL 115
>gi|296268033|ref|YP_003650665.1| anti-sigma-factor antagonist [Thermobispora bispora DSM 43833]
gi|296090820|gb|ADG86772.1| anti-sigma-factor antagonist [Thermobispora bispora DSM 43833]
Length=116
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/98 (34%), Positives = 56/98 (58%), Gaps = 5/98 (5%)
Query 16 GVAVLSIGGEIDLITAAALEEAIGEVVADNPTALVIDLSAVEFLGSVGLKILAATSEKIG 75
G A++++ GEIDL TA L+ +++ +P +VID+S VEF S G+ +L + +++
Sbjct 12 GTAIVAVSGEIDLYTAPQLQAEFARLISTSPQRVVIDMSEVEFCDSTGVNVLLSALKRLR 71
Query 76 QS-VKFGVVARGSVTRRPIHLMGLDKTFRLFSTLHDAL 112
+ V A S R+ + + GLD F T+HDA+
Sbjct 72 ERGGDLEVAAPRSAVRKILQVTGLDSVF----TVHDAV 105
Lambda K H
0.319 0.137 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127525862838
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40