BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3695 Length=310 Score E Sequences producing significant alignments: (Bits) Value gi|308232537|ref|ZP_07416388.2| conserved membrane protein [Myco... 598 2e-169 gi|339296504|gb|AEJ48615.1| conserved membrane protein [Mycobact... 597 9e-169 gi|15610831|ref|NP_218212.1| hypothetical protein Rv3695 [Mycoba... 595 2e-168 gi|148824899|ref|YP_001289653.1| hypothetical protein TBFG_13726... 594 7e-168 gi|298527170|ref|ZP_07014579.1| conserved membrane protein [Myco... 593 9e-168 gi|340628668|ref|YP_004747120.1| hypothetical protein MCAN_37161... 593 2e-167 gi|254552806|ref|ZP_05143253.1| hypothetical protein Mtube_20552... 588 3e-166 gi|297733366|ref|ZP_06962484.1| hypothetical protein MtubKR_1984... 587 7e-166 gi|15843313|ref|NP_338350.1| hypothetical protein MT3797 [Mycoba... 519 2e-145 gi|289571937|ref|ZP_06452164.1| LOW QUALITY PROTEIN: conserved m... 476 2e-132 gi|289759851|ref|ZP_06519229.1| LOW QUALITY PROTEIN: conserved h... 472 3e-131 gi|289748209|ref|ZP_06507587.1| conserved membrane protein [Myco... 407 9e-112 gi|240172922|ref|ZP_04751581.1| hypothetical protein MkanA1_2665... 407 1e-111 gi|118619438|ref|YP_907770.1| hypothetical protein MUL_4278 [Myc... 407 1e-111 gi|183985174|ref|YP_001853465.1| hypothetical protein MMAR_5205 ... 403 2e-110 gi|296166781|ref|ZP_06849202.1| integral membrane protein [Mycob... 395 6e-108 gi|254821554|ref|ZP_05226555.1| integral membrane protein [Mycob... 387 1e-105 gi|342861942|ref|ZP_08718586.1| integral membrane protein [Mycob... 384 1e-104 gi|118465017|ref|YP_879694.1| integral membrane protein [Mycobac... 370 1e-100 gi|41406454|ref|NP_959290.1| hypothetical protein MAP0356c [Myco... 367 2e-99 gi|108801826|ref|YP_642023.1| RDD domain-containing protein [Myc... 353 2e-95 gi|120406406|ref|YP_956235.1| RDD domain-containing protein [Myc... 324 9e-87 gi|315446338|ref|YP_004079217.1| hypothetical protein Mspyr1_484... 320 2e-85 gi|145221925|ref|YP_001132603.1| RDD domain-containing protein [... 317 2e-84 gi|333992614|ref|YP_004525228.1| hypothetical protein JDM601_397... 310 2e-82 gi|118470769|ref|YP_890441.1| integral membrane protein [Mycobac... 310 2e-82 gi|169627490|ref|YP_001701139.1| hypothetical protein MAB_0386c ... 298 5e-79 gi|254773414|ref|ZP_05214930.1| integral membrane protein [Mycob... 251 1e-64 gi|15828242|ref|NP_302505.1| hypothetical protein ML2312 [Mycoba... 239 4e-61 gi|271962939|ref|YP_003337135.1| membrane protein [Streptosporan... 226 4e-57 gi|317508348|ref|ZP_07966022.1| RDD family protein [Segniliparus... 209 7e-52 gi|296394405|ref|YP_003659289.1| RDD domain-containing protein [... 208 1e-51 gi|269128248|ref|YP_003301618.1| RDD domain containing protein [... 201 1e-49 gi|152967777|ref|YP_001363561.1| RDD domain containing protein [... 194 2e-47 gi|329941051|ref|ZP_08290330.1| integral membrane protein [Strep... 191 2e-46 gi|158317593|ref|YP_001510101.1| RDD domain-containing protein [... 189 3e-46 gi|302551841|ref|ZP_07304183.1| integral membrane protein [Strep... 186 6e-45 gi|297562683|ref|YP_003681657.1| RDD domain-containing protein [... 182 6e-44 gi|300783071|ref|YP_003763362.1| RDD domain-containing protein [... 181 1e-43 gi|182438308|ref|YP_001826027.1| hypothetical protein SGR_4515 [... 181 1e-43 gi|326778959|ref|ZP_08238224.1| RDD domain containing protein [S... 180 2e-43 gi|302524425|ref|ZP_07276767.1| predicted protein [Streptomyces ... 179 4e-43 gi|257069215|ref|YP_003155470.1| hypothetical protein Bfae_20730... 179 5e-43 gi|294629696|ref|ZP_06708256.1| RDD family domain-containing pro... 177 2e-42 gi|297200113|ref|ZP_06917510.1| integral membrane protein [Strep... 176 4e-42 gi|345000062|ref|YP_004802916.1| RDD domain containing protein [... 176 5e-42 gi|328882811|emb|CCA56050.1| possible membrane protein [Streptom... 174 1e-41 gi|290959909|ref|YP_003491091.1| protein [Streptomyces scabiei 8... 174 2e-41 gi|21221464|ref|NP_627243.1| integral membrane protein [Streptom... 173 2e-41 gi|332670986|ref|YP_004453994.1| RDD domain-containing protein [... 173 3e-41 >gi|308232537|ref|ZP_07416388.2| conserved membrane protein [Mycobacterium tuberculosis SUMu001] gi|308369199|ref|ZP_07416920.2| conserved membrane protein [Mycobacterium tuberculosis SUMu002] gi|308371422|ref|ZP_07424928.2| conserved membrane protein [Mycobacterium tuberculosis SUMu003] 19 more sequence titles Length=353 Score = 598 bits (1543), Expect = 2e-169, Method: Compositional matrix adjust. Identities = 310/310 (100%), Positives = 310/310 (100%), Gaps = 0/310 (0%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL Sbjct 44 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 103 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML Sbjct 104 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 163 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG Sbjct 164 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 223 Query 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE Sbjct 224 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 283 Query 241 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA 300 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA Sbjct 284 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA 343 Query 301 PDGPGFSPPG 310 PDGPGFSPPG Sbjct 344 PDGPGFSPPG 353 >gi|339296504|gb|AEJ48615.1| conserved membrane protein [Mycobacterium tuberculosis CCDC5079] gi|339300104|gb|AEJ52214.1| conserved membrane protein [Mycobacterium tuberculosis CCDC5180] Length=324 Score = 597 bits (1538), Expect = 9e-169, Method: Compositional matrix adjust. Identities = 310/310 (100%), Positives = 310/310 (100%), Gaps = 0/310 (0%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL Sbjct 15 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 74 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML Sbjct 75 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 134 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG Sbjct 135 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 194 Query 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE Sbjct 195 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 254 Query 241 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA 300 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA Sbjct 255 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA 314 Query 301 PDGPGFSPPG 310 PDGPGFSPPG Sbjct 315 PDGPGFSPPG 324 >gi|15610831|ref|NP_218212.1| hypothetical protein Rv3695 [Mycobacterium tuberculosis H37Rv] gi|31794866|ref|NP_857359.1| hypothetical protein Mb3720 [Mycobacterium bovis AF2122/97] gi|121639609|ref|YP_979833.1| hypothetical protein BCG_3754 [Mycobacterium bovis BCG str. Pasteur 1173P2] 39 more sequence titles Length=310 Score = 595 bits (1535), Expect = 2e-168, Method: Compositional matrix adjust. Identities = 310/310 (100%), Positives = 310/310 (100%), Gaps = 0/310 (0%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL Sbjct 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML Sbjct 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG Sbjct 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 Query 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE Sbjct 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 Query 241 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA 300 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA Sbjct 241 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA 300 Query 301 PDGPGFSPPG 310 PDGPGFSPPG Sbjct 301 PDGPGFSPPG 310 >gi|148824899|ref|YP_001289653.1| hypothetical protein TBFG_13726 [Mycobacterium tuberculosis F11] gi|148723426|gb|ABR08051.1| conserved membrane protein [Mycobacterium tuberculosis F11] Length=310 Score = 594 bits (1531), Expect = 7e-168, Method: Compositional matrix adjust. Identities = 309/310 (99%), Positives = 309/310 (99%), Gaps = 0/310 (0%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL Sbjct 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML Sbjct 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 LGSPAVICSMLSPKAKRVGDVFAGTVVVSE GPRLGPPPVMPPSLAWWASSLQLSGLTAG Sbjct 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSEHGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 Query 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE Sbjct 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 Query 241 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA 300 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA Sbjct 241 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA 300 Query 301 PDGPGFSPPG 310 PDGPGFSPPG Sbjct 301 PDGPGFSPPG 310 >gi|298527170|ref|ZP_07014579.1| conserved membrane protein [Mycobacterium tuberculosis 94_M4241A] gi|298496964|gb|EFI32258.1| conserved membrane protein [Mycobacterium tuberculosis 94_M4241A] Length=310 Score = 593 bits (1530), Expect = 9e-168, Method: Compositional matrix adjust. Identities = 309/310 (99%), Positives = 309/310 (99%), Gaps = 0/310 (0%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL Sbjct 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML Sbjct 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG Sbjct 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 Query 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE Sbjct 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 Query 241 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA 300 LLRLRPTL PAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA Sbjct 241 LLRLRPTLSPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA 300 Query 301 PDGPGFSPPG 310 PDGPGFSPPG Sbjct 301 PDGPGFSPPG 310 >gi|340628668|ref|YP_004747120.1| hypothetical protein MCAN_37161 [Mycobacterium canettii CIPT 140010059] gi|340006858|emb|CCC46047.1| putative conserved membrane protein [Mycobacterium canettii CIPT 140010059] Length=310 Score = 593 bits (1528), Expect = 2e-167, Method: Compositional matrix adjust. Identities = 309/310 (99%), Positives = 309/310 (99%), Gaps = 0/310 (0%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL Sbjct 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML Sbjct 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG Sbjct 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 Query 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE Sbjct 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 Query 241 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA 300 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPW PQQPVIPWPEPDPPPQAAPWPQQA Sbjct 241 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWPPQQPVIPWPEPDPPPQAAPWPQQA 300 Query 301 PDGPGFSPPG 310 PDGPGFSPPG Sbjct 301 PDGPGFSPPG 310 >gi|254552806|ref|ZP_05143253.1| hypothetical protein Mtube_20552 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length=307 Score = 588 bits (1516), Expect = 3e-166, Method: Compositional matrix adjust. Identities = 306/307 (99%), Positives = 307/307 (100%), Gaps = 0/307 (0%) Query 4 VVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLIIF 63 +VTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLIIF Sbjct 1 MVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLIIF 60 Query 64 TVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLLGS 123 TVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLLGS Sbjct 61 TVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLLGS 120 Query 124 PAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAGQAE 183 PAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAGQAE Sbjct 121 PAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAGQAE 180 Query 184 VARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRELLR 243 VARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRELLR Sbjct 181 VARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRELLR 240 Query 244 LRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQAPDG 303 LRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQAPDG Sbjct 241 LRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQAPDG 300 Query 304 PGFSPPG 310 PGFSPPG Sbjct 301 PGFSPPG 307 >gi|297733366|ref|ZP_06962484.1| hypothetical protein MtubKR_19840 [Mycobacterium tuberculosis KZN R506] gi|313660697|ref|ZP_07817577.1| hypothetical protein MtubKV_19835 [Mycobacterium tuberculosis KZN V2475] Length=306 Score = 587 bits (1513), Expect = 7e-166, Method: Compositional matrix adjust. Identities = 305/306 (99%), Positives = 306/306 (100%), Gaps = 0/306 (0%) Query 5 VTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLIIFT 64 +TGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLIIFT Sbjct 1 MTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLIIFT 60 Query 65 VLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLLGSP 124 VLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLLGSP Sbjct 61 VLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLLGSP 120 Query 125 AVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAGQAEV 184 AVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAGQAEV Sbjct 121 AVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAGQAEV 180 Query 185 ARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRELLRL 244 ARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRELLRL Sbjct 181 ARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRELLRL 240 Query 245 RPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQAPDGP 304 RPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQAPDGP Sbjct 241 RPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQAPDGP 300 Query 305 GFSPPG 310 GFSPPG Sbjct 301 GFSPPG 306 >gi|15843313|ref|NP_338350.1| hypothetical protein MT3797 [Mycobacterium tuberculosis CDC1551] gi|13883674|gb|AAK48164.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] Length=269 Score = 519 bits (1337), Expect = 2e-145, Method: Compositional matrix adjust. Identities = 269/269 (100%), Positives = 269/269 (100%), Gaps = 0/269 (0%) Query 42 MLWATALTQFDEALTTAFLIIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPE 101 MLWATALTQFDEALTTAFLIIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPE Sbjct 1 MLWATALTQFDEALTTAFLIIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPE 60 Query 102 RFRQALFRALASVVEIWMLLGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVM 161 RFRQALFRALASVVEIWMLLGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVM Sbjct 61 RFRQALFRALASVVEIWMLLGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVM 120 Query 162 PPSLAWWASSLQLSGLTAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPP 221 PPSLAWWASSLQLSGLTAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPP Sbjct 121 PPSLAWWASSLQLSGLTAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPP 180 Query 222 GVPPQLVLAAVLAERHRRELLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPV 281 GVPPQLVLAAVLAERHRRELLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPV Sbjct 181 GVPPQLVLAAVLAERHRRELLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPV 240 Query 282 IPWPEPDPPPQAAPWPQQAPDGPGFSPPG 310 IPWPEPDPPPQAAPWPQQAPDGPGFSPPG Sbjct 241 IPWPEPDPPPQAAPWPQQAPDGPGFSPPG 269 >gi|289571937|ref|ZP_06452164.1| LOW QUALITY PROTEIN: conserved membrane protein [Mycobacterium tuberculosis T17] gi|289545691|gb|EFD49339.1| LOW QUALITY PROTEIN: conserved membrane protein [Mycobacterium tuberculosis T17] Length=248 Score = 476 bits (1225), Expect = 2e-132, Method: Compositional matrix adjust. Identities = 248/248 (100%), Positives = 248/248 (100%), Gaps = 0/248 (0%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL Sbjct 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML Sbjct 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG Sbjct 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 Query 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE Sbjct 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 Query 241 LLRLRPTL 248 LLRLRPTL Sbjct 241 LLRLRPTL 248 >gi|289759851|ref|ZP_06519229.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289715415|gb|EFD79427.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium tuberculosis T85] Length=306 Score = 472 bits (1215), Expect = 3e-131, Method: Compositional matrix adjust. Identities = 275/286 (97%), Positives = 276/286 (97%), Gaps = 1/286 (0%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL Sbjct 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML Sbjct 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG Sbjct 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 Query 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE Sbjct 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 Query 241 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPE 286 LLRLRPTLPPAGQAPWAQMAPHRGWPPG S QQPVIP + Sbjct 241 LLRLRPTLPPAGQAPWAQMAPHRGWPPGCPAPRRVS-QQPVIPCEQ 285 >gi|289748209|ref|ZP_06507587.1| conserved membrane protein [Mycobacterium tuberculosis T92] gi|289688796|gb|EFD56225.1| conserved membrane protein [Mycobacterium tuberculosis T92] Length=309 Score = 407 bits (1047), Expect = 9e-112, Method: Compositional matrix adjust. Identities = 266/314 (85%), Positives = 270/314 (86%), Gaps = 12/314 (3%) Query 4 VVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLIIF 63 +VTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLIIF Sbjct 1 MVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLIIF 60 Query 64 TVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLLGS 123 TVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLLGS Sbjct 61 TVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLLGS 120 Query 124 PAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAGQAE 183 PAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG + Sbjct 121 PAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAGPSR 180 Query 184 VARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPP------PGVPPQLVLAA-VLAER 236 A R G R+ P PGVPPQ+ A LAER Sbjct 181 GCTSISGAG-----TATRSCATRADGLPDRRVMWLPASLRRRHPGVPPQVGPGAPNLAER 235 Query 237 HRRELLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPW 296 HRRELLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPW Sbjct 236 HRRELLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPW 295 Query 297 PQQAPDGPGFSPPG 310 PQQAPDGPGFSPPG Sbjct 296 PQQAPDGPGFSPPG 309 >gi|240172922|ref|ZP_04751581.1| hypothetical protein MkanA1_26652 [Mycobacterium kansasii ATCC 12478] Length=241 Score = 407 bits (1046), Expect = 1e-111, Method: Compositional matrix adjust. Identities = 214/241 (89%), Positives = 230/241 (96%), Gaps = 0/241 (0%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSEVVTGDAVVLDVQIAQLPVRAVSA+ID+T+IFIGY+LGLMLWATAL+Q DEALT AFL Sbjct 1 MSEVVTGDAVVLDVQIAQLPVRAVSAIIDMTVIFIGYLLGLMLWATALSQLDEALTIAFL 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 I+FTVLA VGYP+ ETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML Sbjct 61 IMFTVLAFVGYPVAIETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 LGSPAVICSM+SPK KRVGD+FAGT+VVSER PRLGPPP MPPSLAWWA+SLQLSGLTAG Sbjct 121 LGSPAVICSMVSPKGKRVGDMFAGTIVVSERAPRLGPPPAMPPSLAWWAASLQLSGLTAG 180 Query 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 QAE+ARQFL RA QLDP LREQMAYRIAG+V++R+APPPPPGVPPQLVLAAVLAERHRRE Sbjct 181 QAELARQFLSRASQLDPRLREQMAYRIAGEVLSRVAPPPPPGVPPQLVLAAVLAERHRRE 240 Query 241 L 241 L Sbjct 241 L 241 >gi|118619438|ref|YP_907770.1| hypothetical protein MUL_4278 [Mycobacterium ulcerans Agy99] gi|118571548|gb|ABL06299.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=301 Score = 407 bits (1045), Expect = 1e-111, Method: Compositional matrix adjust. Identities = 236/311 (76%), Positives = 254/311 (82%), Gaps = 13/311 (4%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSEVVTGDAVVLDVQIAQLPVRAVSA+ID+T++FIGYI+GL LWA +L++ DEALT AFL Sbjct 1 MSEVVTGDAVVLDVQIAQLPVRAVSAIIDMTVMFIGYIMGLTLWAASLSELDEALTIAFL 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 IIFTVL LVGYP++ ETATRGRS+GKI MGLRVVSDDGGPERFRQALFRALA+VVEIWML Sbjct 61 IIFTVLVLVGYPVIMETATRGRSLGKIAMGLRVVSDDGGPERFRQALFRALAAVVEIWML 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 LGSPAVICSMLSPKAKRVGD+FAGT+VVSERGPRL PPP MPP+LAWWASSLQLSGL+AG Sbjct 121 LGSPAVICSMLSPKAKRVGDIFAGTIVVSERGPRLAPPPAMPPTLAWWASSLQLSGLSAG 180 Query 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 QAEVARQFL RAPQLD LR QMAYRIAGDV++ IAPPPPPG PPQLVLAAVLAERHRRE Sbjct 181 QAEVARQFLSRAPQLDLRLRHQMAYRIAGDVLSHIAPPPPPGTPPQLVLAAVLAERHRRE 240 Query 241 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPP--PQAAPWPQ 298 L RLR PAG P P W P QP P P PP P AP P Sbjct 241 LARLR----PAGAGAPPGWPPQTPPAP------VWWPGQPA-PQPLIQPPFAPDPAPSPP 289 Query 299 QAPDGPGFSPP 309 Q P G GFSPP Sbjct 290 QGPVGGGFSPP 300 >gi|183985174|ref|YP_001853465.1| hypothetical protein MMAR_5205 [Mycobacterium marinum M] gi|183178500|gb|ACC43610.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=301 Score = 403 bits (1036), Expect = 2e-110, Method: Compositional matrix adjust. Identities = 232/309 (76%), Positives = 251/309 (82%), Gaps = 9/309 (2%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSEVVTGDAVVLDVQIAQLPVRAVSA+ID+T++FIGYI+GL LWA +L++ DEALT AFL Sbjct 1 MSEVVTGDAVVLDVQIAQLPVRAVSAIIDMTVMFIGYIMGLTLWAASLSELDEALTIAFL 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 IIFTVL LVGYP++ ETATRGRS+GKI MGLRVVSDDGGPERFRQALFRALA+VVEIWML Sbjct 61 IIFTVLVLVGYPVIMETATRGRSLGKIAMGLRVVSDDGGPERFRQALFRALAAVVEIWML 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 LGSPAVICSMLSPKAKRVGD+FAGT+VVSERGPRL PPP MPP+LAWWASSLQLSGL+AG Sbjct 121 LGSPAVICSMLSPKAKRVGDIFAGTIVVSERGPRLAPPPAMPPTLAWWASSLQLSGLSAG 180 Query 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 QAEVARQFL RAPQLD LR QMAYRIAGDV++ IAPPPPPG PPQLVLAAVLAERHRRE Sbjct 181 QAEVARQFLSRAPQLDLRLRHQMAYRIAGDVLSHIAPPPPPGTPPQLVLAAVLAERHRRE 240 Query 241 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQA 300 L RLRP A Q P W W Q P +P P AP P Q Sbjct 241 LARLRPAGAGAPPGWPPQTPPAPVW---------WPGQPAPQPQIQPQFAPDPAPSPPQG 291 Query 301 PDGPGFSPP 309 P G GFSPP Sbjct 292 PVGGGFSPP 300 >gi|296166781|ref|ZP_06849202.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897866|gb|EFG77451.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=255 Score = 395 bits (1014), Expect = 6e-108, Method: Compositional matrix adjust. Identities = 207/245 (85%), Positives = 228/245 (94%), Gaps = 0/245 (0%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 M+EVVTGDAVVLDVQIAQLPVRA+SA+IDI +I +GY+LGLMLWA LTQFD AL+TA L Sbjct 1 MAEVVTGDAVVLDVQIAQLPVRALSALIDIAVIVVGYLLGLMLWAATLTQFDSALSTAVL 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 +IFTV+A+VGYP+V ETATRGRSVGKI MGLRVVSDDGGPERFRQALFRALASVVEIWML Sbjct 61 LIFTVVAIVGYPVVLETATRGRSVGKIAMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 GSPAVICS+LSPKAKR+GD+FAGTVV++ERGPRLGPPPVMPP+LAWWA+SLQLSGL+ G Sbjct 121 FGSPAVICSILSPKAKRIGDIFAGTVVINERGPRLGPPPVMPPALAWWAASLQLSGLSPG 180 Query 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 QAEVARQFL RA QLD LR QMAYRIAGDVV+RIAPPPPPG PP+LVLAAVLAERHRRE Sbjct 181 QAEVARQFLSRATQLDRQLRHQMAYRIAGDVVSRIAPPPPPGAPPELVLAAVLAERHRRE 240 Query 241 LLRLR 245 L RLR Sbjct 241 LARLR 245 >gi|254821554|ref|ZP_05226555.1| integral membrane protein [Mycobacterium intracellulare ATCC 13950] Length=245 Score = 387 bits (994), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 201/244 (83%), Positives = 222/244 (91%), Gaps = 0/244 (0%) Query 3 EVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLII 62 VVTGDAVVLDVQIAQLPVR +SA+IDI ++ IGY+LGLMLWA LT+FD AL+ A L+I Sbjct 2 SVVTGDAVVLDVQIAQLPVRTLSALIDIAVMVIGYLLGLMLWAATLTEFDTALSNAILLI 61 Query 63 FTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLLG 122 FTVL +VGYPL+ ETATRGRSVGKI +GLRVVSDDGGPERFRQALFRALAS+VEIWML G Sbjct 62 FTVLVIVGYPLILETATRGRSVGKIALGLRVVSDDGGPERFRQALFRALASLVEIWMLFG 121 Query 123 SPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAGQA 182 SPA+ICS+LSPKAKR+GD+FAGTVVV+ERGPRLGPPP MPP+LAWWA+SLQLSGL+ GQA Sbjct 122 SPAIICSILSPKAKRIGDIFAGTVVVNERGPRLGPPPTMPPALAWWAASLQLSGLSVGQA 181 Query 183 EVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRELL 242 EVARQFL RAPQLD LR QMAYRIAGDVVARIAPPPPPG P +LVLAAVLAERHRREL Sbjct 182 EVARQFLSRAPQLDRQLRTQMAYRIAGDVVARIAPPPPPGAPAELVLAAVLAERHRRELA 241 Query 243 RLRP 246 RLRP Sbjct 242 RLRP 245 >gi|342861942|ref|ZP_08718586.1| integral membrane protein [Mycobacterium colombiense CECT 3035] gi|342130482|gb|EGT83791.1| integral membrane protein [Mycobacterium colombiense CECT 3035] Length=309 Score = 384 bits (986), Expect = 1e-104, Method: Compositional matrix adjust. Identities = 210/246 (86%), Positives = 227/246 (93%), Gaps = 0/246 (0%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSEVVTGDAVVLDVQIAQLPVR +SA+IDI ++ IGY+LGLMLWA LTQFD ALT A L Sbjct 1 MSEVVTGDAVVLDVQIAQLPVRTLSALIDIVVMVIGYLLGLMLWAATLTQFDTALTNAIL 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 +IFTVL +VGYPLV ETATRGRSVGKI MGLRVVSDDGGPERFRQALFRALA++VEIWML Sbjct 61 LIFTVLVIVGYPLVLETATRGRSVGKIAMGLRVVSDDGGPERFRQALFRALAALVEIWML 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 GSPAVICS+LSPKAKR+GD+FAGTVVV+ERGPRLGPPP+MPP+LAWWASSLQLSGL+AG Sbjct 121 FGSPAVICSILSPKAKRIGDIFAGTVVVNERGPRLGPPPMMPPALAWWASSLQLSGLSAG 180 Query 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 QAEVARQFL RA QLD LR QMAYRIAGDVVARIAPPPPPG PP+LVLAAVLAERHRRE Sbjct 181 QAEVARQFLSRATQLDRQLRLQMAYRIAGDVVARIAPPPPPGAPPELVLAAVLAERHRRE 240 Query 241 LLRLRP 246 L RLRP Sbjct 241 LARLRP 246 >gi|118465017|ref|YP_879694.1| integral membrane protein [Mycobacterium avium 104] gi|118166304|gb|ABK67201.1| integral membrane protein [Mycobacterium avium 104] Length=290 Score = 370 bits (951), Expect = 1e-100, Method: Compositional matrix adjust. Identities = 221/278 (80%), Positives = 242/278 (88%), Gaps = 11/278 (3%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSEVVTGDAVVLDVQIAQLPVRA+SA+IDI +I +GY+LGLMLWA LTQFD AL+ A L Sbjct 1 MSEVVTGDAVVLDVQIAQLPVRALSALIDIAVIVVGYLLGLMLWAATLTQFDTALSNAIL 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 +IFTVL +VGYPL+ ETATRGRSVGKI +GLRVVSDDGGPERFRQALFRALAS+VEIWML Sbjct 61 LIFTVLVIVGYPLILETATRGRSVGKIALGLRVVSDDGGPERFRQALFRALASLVEIWML 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 GSPAVICS+LSPKAKR+GD+FAGTVVV+ERGPRLGPPP MPPSLAWWASSLQLSGL++G Sbjct 121 FGSPAVICSILSPKAKRIGDIFAGTVVVNERGPRLGPPPAMPPSLAWWASSLQLSGLSSG 180 Query 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 QAEVARQFL RA QLDP LR QMAYRIAGDVVARIAPPPPPG PP+LVLAAVLAERHRRE Sbjct 181 QAEVARQFLSRAAQLDPGLRLQMAYRIAGDVVARIAPPPPPGAPPELVLAAVLAERHRRE 240 Query 241 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQ 278 L RLRP APW P G+PP G+ P +PQ Sbjct 241 LARLRPP------APW----PAPGYPPAWPGSGP-APQ 267 >gi|41406454|ref|NP_959290.1| hypothetical protein MAP0356c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394803|gb|AAS02673.1| hypothetical protein MAP_0356c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336460870|gb|EGO39755.1| putative membrane domain-containing protein [Mycobacterium avium subsp. paratuberculosis S397] Length=289 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 219/278 (79%), Positives = 240/278 (87%), Gaps = 12/278 (4%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSEVVTGDAVVLDVQIAQLPVRA+SA+IDI +I +GY+LGLMLWA LTQFD AL+ A L Sbjct 1 MSEVVTGDAVVLDVQIAQLPVRALSALIDIAVIVVGYLLGLMLWAATLTQFDTALSNAIL 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 +IFTVL +VGYPL+ ETATRGRSVGKI +GLRVVSDDGGPERFRQALFRALAS+VEIWML Sbjct 61 LIFTVLVIVGYPLILETATRGRSVGKIALGLRVVSDDGGPERFRQALFRALASLVEIWML 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 GSPAVICS+LSPKAKR+GD+FAGTVVV+ERGPRLGPPP MPPSLAWWASSLQLSGL++G Sbjct 121 FGSPAVICSILSPKAKRIGDIFAGTVVVNERGPRLGPPPAMPPSLAWWASSLQLSGLSSG 180 Query 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 QAEVARQFL RA QLDP LR QMAYRIAGDVVARIAPPPP PP+LVLAAVLAERHRRE Sbjct 181 QAEVARQFLSRAAQLDPGLRLQMAYRIAGDVVARIAPPPPG-APPELVLAAVLAERHRRE 239 Query 241 LLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQ 278 L RLRP APW P G+PP G+ P +PQ Sbjct 240 LARLRPP------APW----PAPGYPPAWPGSGP-APQ 266 >gi|108801826|ref|YP_642023.1| RDD domain-containing protein [Mycobacterium sp. MCS] gi|119870979|ref|YP_940931.1| RDD domain-containing protein [Mycobacterium sp. KMS] gi|126437795|ref|YP_001073486.1| RDD domain-containing protein [Mycobacterium sp. JLS] gi|108772245|gb|ABG10967.1| RDD domain containing protein [Mycobacterium sp. MCS] gi|119697068|gb|ABL94141.1| RDD domain containing protein [Mycobacterium sp. KMS] gi|126237595|gb|ABO00996.1| RDD domain containing protein [Mycobacterium sp. JLS] Length=262 Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 185/248 (75%), Positives = 216/248 (88%), Gaps = 1/248 (0%) Query 4 VVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLIIF 63 VVTGDAVVLDVQIAQLP+RA+SA++DI +IF+GY LGL+LWA L+ FD AL+ A LIIF Sbjct 8 VVTGDAVVLDVQIAQLPIRALSAMVDILVIFVGYTLGLVLWALTLSDFDTALSAAVLIIF 67 Query 64 TVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLLGS 123 TVL LVGYPLV+ETATRGR++GK+ +GLRVVSDDGGPERFRQALFRALA +E+WML G Sbjct 68 TVLTLVGYPLVFETATRGRTLGKMALGLRVVSDDGGPERFRQALFRALAGFIELWMLAGG 127 Query 124 PAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAGQAE 183 PA +CS+LSPK KR+GD+FAGTVV+SER PR+ PPPVMPP+LAWWA +L+LSGL QAE Sbjct 128 PAAVCSLLSPKGKRIGDIFAGTVVISERAPRMSPPPVMPPALAWWAGTLELSGLNGEQAE 187 Query 184 VARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRELLR 243 ARQFL RA QL+P LR++MAYRIAG+VV+RI+PPPPPG PPQ VLAAVLAERHRR L R Sbjct 188 RARQFLSRAHQLEPRLRDEMAYRIAGEVVSRISPPPPPGTPPQYVLAAVLAERHRRALAR 247 Query 244 LRPTLPPA 251 L PT PPA Sbjct 248 LVPT-PPA 254 >gi|120406406|ref|YP_956235.1| RDD domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119959224|gb|ABM16229.1| RDD domain containing protein [Mycobacterium vanbaalenii PYR-1] Length=293 Score = 324 bits (831), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 179/242 (74%), Positives = 213/242 (89%), Gaps = 0/242 (0%) Query 4 VVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLIIF 63 VVTGDAVVLDVQIAQLPVR +SA+ID+T++F+ Y+LG++LWA LTQFD A + A LIIF Sbjct 8 VVTGDAVVLDVQIAQLPVRVLSALIDVTVVFVVYVLGVILWAVTLTQFDPAFSGAVLIIF 67 Query 64 TVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLLGS 123 TVLALVGYP ++ETATRG+++GK+ +GLRVVS+DG PERFRQALFRALA V+E+WML G Sbjct 68 TVLALVGYPTIFETATRGKTLGKLALGLRVVSEDGSPERFRQALFRALAGVIELWMLTGG 127 Query 124 PAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAGQAE 183 PAV+CS+LSPK KR+GD+FAGTVV+SER PR PPPVMPP LAWWA++L LSGL+ QAE Sbjct 128 PAVLCSLLSPKGKRIGDIFAGTVVISERAPRQSPPPVMPPQLAWWATTLALSGLSPSQAE 187 Query 184 VARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRELLR 243 +ARQFL RA QLDP +R+QMAYRIA DVVA+I+PPPPPG PP LVLAAVLAERHRREL R Sbjct 188 IARQFLSRARQLDPQVRDQMAYRIASDVVAQISPPPPPGTPPALVLAAVLAERHRRELGR 247 Query 244 LR 245 L+ Sbjct 248 LQ 249 >gi|315446338|ref|YP_004079217.1| hypothetical protein Mspyr1_48450 [Mycobacterium sp. Spyr1] gi|315264641|gb|ADU01383.1| predicted membrane protein/domain [Mycobacterium sp. Spyr1] Length=280 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 178/249 (72%), Positives = 214/249 (86%), Gaps = 0/249 (0%) Query 4 VVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLIIF 63 VVTGDAVVLD+QIAQLPVRA+SA+ID++++ + Y++G++LWA L+QFD A + A LIIF Sbjct 8 VVTGDAVVLDIQIAQLPVRALSALIDVSVVALVYVIGVILWAMTLSQFDPAFSAAVLIIF 67 Query 64 TVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLLGS 123 TVLALVGYP ++ETATRG+++GK+V+GLRVVSDDG PERFRQALFRALA V+EIWML G Sbjct 68 TVLALVGYPTIFETATRGKTLGKMVLGLRVVSDDGSPERFRQALFRALAGVIEIWMLTGG 127 Query 124 PAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAGQAE 183 PAV+CS+LS K KR+GD+FAGTVV+SER PR PPP MPP LAWWASSLQLSGL QAE Sbjct 128 PAVLCSLLSSKGKRIGDIFAGTVVISERAPRQAPPPAMPPQLAWWASSLQLSGLAPSQAE 187 Query 184 VARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRELLR 243 +ARQFL RA QLDP +R+QM+YR+ DVVA+I+PPPPPG PP LVLAAVLAERHRREL R Sbjct 188 MARQFLARAGQLDPQIRDQMSYRVTSDVVAQISPPPPPGAPPALVLAAVLAERHRRELAR 247 Query 244 LRPTLPPAG 252 L+ +P G Sbjct 248 LQQPVPGPG 256 >gi|145221925|ref|YP_001132603.1| RDD domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145214411|gb|ABP43815.1| RDD domain containing protein [Mycobacterium gilvum PYR-GCK] Length=280 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 178/242 (74%), Positives = 211/242 (88%), Gaps = 0/242 (0%) Query 4 VVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLIIF 63 VVTGDAVVLD+QIAQLPVRA+SA+ID++++ + YI+G++LWA L+QFD A + A LIIF Sbjct 8 VVTGDAVVLDIQIAQLPVRALSALIDVSVVALVYIIGVILWAMTLSQFDPAFSGAVLIIF 67 Query 64 TVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLLGS 123 TVLALVGYP ++ETATRGR++GK+ +GLRVVSDDG PERFRQALFRALA V+EIWML G Sbjct 68 TVLALVGYPAIFETATRGRTLGKMALGLRVVSDDGSPERFRQALFRALAGVIEIWMLTGG 127 Query 124 PAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAGQAE 183 PAV+CS++S K KR+GD+FAGTVV+SER PR PPP MPP LAWWASSLQLSGL QAE Sbjct 128 PAVLCSLVSSKGKRIGDIFAGTVVISERAPRQAPPPAMPPQLAWWASSLQLSGLAPSQAE 187 Query 184 VARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRELLR 243 +ARQFL RA QLDP +R+QMAYR+ DVVA+I+PPPPPGVPP LVLAAVLAERHRREL R Sbjct 188 MARQFLARAGQLDPHIRDQMAYRVTSDVVAQISPPPPPGVPPALVLAAVLAERHRRELAR 247 Query 244 LR 245 L+ Sbjct 248 LQ 249 >gi|333992614|ref|YP_004525228.1| hypothetical protein JDM601_3974 [Mycobacterium sp. JDM601] gi|333488582|gb|AEF37974.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=273 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 171/244 (71%), Positives = 203/244 (84%), Gaps = 0/244 (0%) Query 2 SEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLI 61 E+VTGDAVVLD+ IAQLPVRAVSA+IDIT++ + Y+ ++LWA L +FD ALT A +I Sbjct 6 HELVTGDAVVLDIPIAQLPVRAVSALIDITVVMVAYVCSMVLWAMTLGRFDAALTAAIMI 65 Query 62 IFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLL 121 IF V+ LVGYP+ ET TRGRS+GK+ MGLRVVSDDGGPERFRQALFRALA VVEIW L Sbjct 66 IFAVVLLVGYPVTIETLTRGRSLGKMAMGLRVVSDDGGPERFRQALFRALAGVVEIWALT 125 Query 122 GSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAGQ 181 GSPAVI S+LS + KR+GD+FAGT+V+SERGP PPP MPP LAWWAS+LQLSGL + Sbjct 126 GSPAVIASLLSARGKRLGDIFAGTMVISERGPAAAPPPQMPPGLAWWASTLQLSGLRSES 185 Query 182 AEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRREL 241 AE+ARQFL RA QLDP R+ MAYRI+G+V+A I+PPPPP PP+LVLAAVLAERH+REL Sbjct 186 AELARQFLGRAAQLDPHTRQMMAYRISGEVLAHISPPPPPDAPPELVLAAVLAERHQREL 245 Query 242 LRLR 245 RL+ Sbjct 246 ARLQ 249 >gi|118470769|ref|YP_890441.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155] gi|118172056|gb|ABK72952.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155] Length=307 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 194/306 (64%), Positives = 231/306 (76%), Gaps = 7/306 (2%) Query 4 VVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLIIF 63 VVTGDAVVLDV IAQLPVR ++ +IDI IFI Y++G++LW+ LTQ DEAL+ A LIIF Sbjct 8 VVTGDAVVLDVSIAQLPVRVLAILIDIFAIFIFYVVGVLLWSITLTQLDEALSAAILIIF 67 Query 64 TVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLLGS 123 TVLA+VGYP++ ETATRGRS+GK+ +GLRVVS+DG PERFRQALFR ++ +EIWML G Sbjct 68 TVLAIVGYPVIMETATRGRSLGKMALGLRVVSEDGSPERFRQALFRGISGFIEIWMLTGG 127 Query 124 PAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAGQAE 183 PAVICS+LS K KR+GD+FAGTVV+SERGPR+ PPP MPP+LAWWASSLQLSGL QAE Sbjct 128 PAVICSLLSSKGKRIGDIFAGTVVISERGPRMQPPPAMPPALAWWASSLQLSGLGPEQAE 187 Query 184 VARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRELLR 243 +ARQ+L RA LDP +R+ M RI G+V +RI+PPPPPG PPQ VLAAVLAERHRREL R Sbjct 188 LARQYLNRAQHLDPRIRDMMGQRILGEVASRISPPPPPGAPPQCVLAAVLAERHRRELAR 247 Query 244 LRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQQAPDG 303 L PT PP P G+P A + PQ PV + P P +P PQQ P Sbjct 248 LMPTPPPPPSPPTTPPWSPPGYP-----AAGYPPQPPVPAYSPPPAVPAHSP-PQQ-PSA 300 Query 304 PGFSPP 309 GF+PP Sbjct 301 GGFAPP 306 >gi|169627490|ref|YP_001701139.1| hypothetical protein MAB_0386c [Mycobacterium abscessus ATCC 19977] gi|169239457|emb|CAM60485.1| Conserved hypothetical membrane protein [Mycobacterium abscessus] Length=279 Score = 298 bits (764), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 166/246 (68%), Positives = 204/246 (83%), Gaps = 0/246 (0%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSE+VTGDAVVLDV++AQLPVR VSA IDI + I G+ + A +L+QFD ALT A Sbjct 1 MSELVTGDAVVLDVKVAQLPVRVVSAFIDIFVQMIVLYGGIFVVAFSLSQFDAALTGALS 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 I+++VLALVGYP++WE ATRGRS+GK+ MGLRVVSDDGGPER RQA+ RAL++VVEI+M Sbjct 61 IVYSVLALVGYPVIWEMATRGRSLGKMAMGLRVVSDDGGPERLRQAVIRALSAVVEIFMF 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 +G+PAVI S+ S K KR+GD+FAGT+V+SERGP+L PPP+MPP LA WA SLQLSGLT+ Sbjct 121 MGAPAVIASLASTKGKRLGDIFAGTMVISERGPKLPPPPMMPPQLAQWAQSLQLSGLTSD 180 Query 181 QAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE 240 QA++ARQFL RA QL P R+QM Y+I+ DV+A IAPPPPPG PPQ +LAAVLAERHRR Sbjct 181 QADLARQFLNRAGQLAPHTRDQMLYQISTDVLASIAPPPPPGTPPQFMLAAVLAERHRRA 240 Query 241 LLRLRP 246 L ++RP Sbjct 241 LAQMRP 246 >gi|254773414|ref|ZP_05214930.1| integral membrane protein [Mycobacterium avium subsp. avium ATCC 25291] Length=326 Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 124/150 (83%), Positives = 139/150 (93%), Gaps = 0/150 (0%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSEVVTGDAVVLDVQIAQLPVRA+SA+IDI +I +GY+LGLMLWA LTQFD AL+ A L Sbjct 1 MSEVVTGDAVVLDVQIAQLPVRALSALIDIAVIVVGYLLGLMLWAATLTQFDTALSNAIL 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 +IFTVL +VGYPL+ ETATRGRSVGKI +GLRVVSDDGGPERFRQALFRALAS+VEIWML Sbjct 61 LIFTVLVIVGYPLILETATRGRSVGKIALGLRVVSDDGGPERFRQALFRALASLVEIWML 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSE 150 GSPAVICS+LSPKAKR+GD+FAGTVVV+E Sbjct 121 FGSPAVICSILSPKAKRIGDIFAGTVVVNE 150 >gi|15828242|ref|NP_302505.1| hypothetical protein ML2312 [Mycobacterium leprae TN] gi|221230719|ref|YP_002504135.1| hypothetical protein MLBr_02312 [Mycobacterium leprae Br4923] gi|13093935|emb|CAC31828.1| possible membrane protein [Mycobacterium leprae] gi|219933826|emb|CAR72410.1| possible membrane protein [Mycobacterium leprae Br4923] Length=196 Score = 239 bits (610), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 127/159 (80%), Positives = 139/159 (88%), Gaps = 0/159 (0%) Query 89 MGLRVVSDDGGPERFRQALFRALASVVEIWMLLGSPAVICSMLSPKAKRVGDVFAGTVVV 148 MGLRVVSDDG PE FRQALFR LASVVEIWMLLGSPAVICSMLSPKAK +GD+F GTVV+ Sbjct 1 MGLRVVSDDGSPEHFRQALFRVLASVVEIWMLLGSPAVICSMLSPKAKHIGDIFPGTVVI 60 Query 149 SERGPRLGPPPVMPPSLAWWASSLQLSGLTAGQAEVARQFLVRAPQLDPALREQMAYRIA 208 SER P+ GP P MPPSLAWWASSLQLSGL QAE+A QFL RAPQLDP L+EQMAYRI Sbjct 61 SERRPQRGPSPAMPPSLAWWASSLQLSGLNTRQAELAHQFLSRAPQLDPQLQEQMAYRIT 120 Query 209 GDVVARIAPPPPPGVPPQLVLAAVLAERHRRELLRLRPT 247 GDV++RIAPPPP PPQL+LAAVLAERHR +L++LRPT Sbjct 121 GDVMSRIAPPPPSSTPPQLMLAAVLAERHRHKLVQLRPT 159 >gi|271962939|ref|YP_003337135.1| membrane protein [Streptosporangium roseum DSM 43021] gi|270506114|gb|ACZ84392.1| membrane protein/domain-like protein [Streptosporangium roseum DSM 43021] Length=343 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 140/250 (56%), Positives = 183/250 (74%), Gaps = 11/250 (4%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDI-----TIIFIGYILGLMLWATALTQFDEAL 55 MS+VVTG+AVV++V++AQLP RA + +IDI T+ +++G +++ DEAL Sbjct 1 MSDVVTGEAVVVEVRVAQLPSRAAALLIDIAVQLATLFGASFVVGALVFTA-----DEAL 55 Query 56 TTAFLIIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVV 115 TT I TVL LVGYP+++ET +RGRS+GK+ +GLRVVSDDG PERFRQALFR LA V+ Sbjct 56 TTMIYIALTVLVLVGYPVIFETLSRGRSLGKLALGLRVVSDDGSPERFRQALFRGLAGVL 115 Query 116 EIWMLLGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPR-LGPPPVMPPSLAWWASSLQL 174 E W L G+PA+I S++S K KR+GD+FAGT+V+SERGPR GPP MPP LA WA++L+L Sbjct 116 EFWTLSGAPALISSLISEKGKRLGDIFAGTIVISERGPRQYGPPLEMPPQLAAWAATLEL 175 Query 175 SGLTAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLA 234 S L G A ARQ+L R L PA++ +M RIA ++ A ++PPPPPGVPP L AVLA Sbjct 176 SRLPEGIATTARQYLTRWHDLSPAVQHEMGARIATEMSAFVSPPPPPGVPPFAYLTAVLA 235 Query 235 ERHRRELLRL 244 ER RR+ RL Sbjct 236 ERRRRDHARL 245 >gi|317508348|ref|ZP_07966022.1| RDD family protein [Segniliparus rugosus ATCC BAA-974] gi|316253346|gb|EFV12742.1| RDD family protein [Segniliparus rugosus ATCC BAA-974] Length=273 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 121/246 (50%), Positives = 169/246 (69%), Gaps = 6/246 (2%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITI-----IFIGYILGLMLWAT-ALTQFDEA 54 M E+VTGDAVVLDVQ+AQLP+RAV+ +ID + + + ++L L +A A D A Sbjct 1 MPELVTGDAVVLDVQLAQLPMRAVAKLIDAVVQIVFVVLLLFVLCLAAFAVIASKSLDTA 60 Query 55 LTTAFLIIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASV 114 A + + +VGYP+++ET +RGR++GK+ MGLRVV++DGGP RFRQAL R L +V Sbjct 61 WVFAMNLFLVFMIVVGYPVLYETLSRGRTLGKMAMGLRVVAEDGGPIRFRQALIRGLMAV 120 Query 115 VEIWMLLGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQL 174 EI+ L +PAVI S++S K KR+GDVFAGTVV++ER + PP MP LA WAS+L L Sbjct 121 FEIYTLGAAPAVISSLVSAKGKRIGDVFAGTVVINERAEGVRPPLPMPWGLAPWASTLSL 180 Query 175 SGLTAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLA 234 + LT A +A Q++ R +L P + + + +RIA ++ A I+PPPP +P ++ AVLA Sbjct 181 ARLTPELALLAGQYVRRVRELRPEVAQALEHRIADEIAASISPPPPADMPRGTLIIAVLA 240 Query 235 ERHRRE 240 ERHRRE Sbjct 241 ERHRRE 246 >gi|296394405|ref|YP_003659289.1| RDD domain-containing protein [Segniliparus rotundus DSM 44985] gi|296181552|gb|ADG98458.1| RDD domain containing protein [Segniliparus rotundus DSM 44985] Length=274 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 121/246 (50%), Positives = 166/246 (68%), Gaps = 6/246 (2%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWA------TALTQFDEA 54 M E+VTGDAVVLDVQ+AQLPVRA++ +ID + +L L + A + D A Sbjct 1 MPELVTGDAVVLDVQLAQLPVRALAKLIDAALQLAVLVLVLFVACFGAVAAAAYHRMDGA 60 Query 55 LTTAFLIIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASV 114 A + V+ +VGYP++ ET TRGR+VGK+ MGLRVV++DGGP RFRQAL R L +V Sbjct 61 WVFAMFLFLAVMIVVGYPVLAETLTRGRTVGKMAMGLRVVAEDGGPVRFRQALVRGLMAV 120 Query 115 VEIWMLLGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQL 174 EI+ L +PAVI S++S K KR+GD+FAGTVV++ER R+ PP MP LA WA SL L Sbjct 121 FEIYSLGAAPAVISSLVSAKGKRIGDMFAGTVVINERAERVPPPLPMPVGLAPWARSLSL 180 Query 175 SGLTAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLA 234 + L+ A +A+Q++ RA +L P + + + RIA +V A ++PPPP +P +++ VLA Sbjct 181 AKLSPELALLAQQYVRRARELRPQVSQALERRIADEVAASVSPPPPSDMPASVLIVTVLA 240 Query 235 ERHRRE 240 ER RRE Sbjct 241 ERSRRE 246 >gi|269128248|ref|YP_003301618.1| RDD domain containing protein [Thermomonospora curvata DSM 43183] gi|268313206|gb|ACY99580.1| RDD domain containing protein [Thermomonospora curvata DSM 43183] Length=288 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 122/237 (52%), Positives = 165/237 (70%), Gaps = 7/237 (2%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQF--DEALTTA 58 MSE+VTG+AV L++++A+L RA + V+D+ +F +L + L+ A T DEA Sbjct 1 MSELVTGEAVALEIRVARLAGRACALVLDL--VFQVMLLNVALYLAAATNAIADEAWGVG 58 Query 59 FLIIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIW 118 I+ LVGYP +ET +RGR+ GK+ +GLRVV+DDGGP RFRQA RALASVVEIW Sbjct 59 LGIVAVAGVLVGYPCAFETLSRGRTPGKLAVGLRVVADDGGPVRFRQAFVRALASVVEIW 118 Query 119 MLLGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPR---LGPPPVMPPSLAWWASSLQLS 175 +L G+PA++ S+ + + KR+GD+FAGTVV+ ER P GP VMPP LA WA SL+LS Sbjct 119 VLFGAPALVASLFNRRGKRLGDLFAGTVVIQERVPTTAIFGPVAVMPPQLADWARSLELS 178 Query 176 GLTAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAV 232 L G A +ARQ+L R +L P R+ + RIAG V+A I+PPPPPGV P+++L+AV Sbjct 179 QLPDGLALIARQYLARFWELLPEARDALGRRIAGQVLAVISPPPPPGVRPEILLSAV 235 >gi|152967777|ref|YP_001363561.1| RDD domain containing protein [Kineococcus radiotolerans SRS30216] gi|151362294|gb|ABS05297.1| RDD domain containing protein [Kineococcus radiotolerans SRS30216] Length=272 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 109/248 (44%), Positives = 155/248 (63%), Gaps = 5/248 (2%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATA--LTQFDEALTTA 58 + E+VTG+AVVL ++ A R ++A++D I+ G + +LW T+ L++ DEA A Sbjct 11 VGEIVTGEAVVLGLRAASFASRMLAALLDAVIV--GVVFAALLWGTSVLLSETDEAAYAA 68 Query 59 FLIIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIW 118 + + L L+G P+ ETATRGR+VGK+V+G+RVV DDGGP RFR L RA+ + E+W Sbjct 69 ITLAESALCLIGIPVAVETATRGRTVGKLVLGVRVVRDDGGPVRFRHCLVRAVVGLFELW 128 Query 119 MLLGSPAVICSMLSPKAKRVGDVFAGTVVVSER-GPRLGPPPVMPPSLAWWASSLQLSGL 177 L GSPA+I ++++ + KRVGD+ AGT VV ER R P P MPP LA WA + + L Sbjct 129 GLAGSPAIISALVTRRGKRVGDLLAGTYVVRERTAARHVPLPPMPPELAGWARTADIGRL 188 Query 178 TAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERH 237 ARQFL R L+PA R + +A ++ ++P PP G P+ L AVL ER Sbjct 189 PLPVVTAARQFLARTATLNPASRTALGVELADALLLHVSPAPPAGTDPERFLVAVLVERR 248 Query 238 RRELLRLR 245 REL+R++ Sbjct 249 DRELVRMQ 256 >gi|329941051|ref|ZP_08290330.1| integral membrane protein [Streptomyces griseoaurantiacus M045] gi|329299582|gb|EGG43481.1| integral membrane protein [Streptomyces griseoaurantiacus M045] Length=325 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/272 (46%), Positives = 158/272 (59%), Gaps = 9/272 (3%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSE+VTG+AV L+++ A+LP R ++ +D+ + + YI+ +++ A + DEA A Sbjct 1 MSELVTGEAVALELRPARLPSRVLAVALDLGVTVLAYIVVMIVVVLAGSGLDEAAQIALS 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 I +L LVG P+ ET + GRS+GK+ GLRVV DDGGP RFR AL R +VEI M Sbjct 61 IAVFLLVLVGGPIAVETLSHGRSLGKLACGLRVVRDDGGPIRFRHALVRGAIGMVEILMT 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLG----PPPVMPPSLAWWASSLQLSG 176 G A I S++S + +R+GDVFAGT+VV ER P G PPP PP L S L LS Sbjct 121 FGVVACIASLVSARGRRLGDVFAGTLVVRERIPAGGTGFVPPP--PPWLVGRFSGLDLSA 178 Query 177 LTAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAER 236 + G RQ+L R PQLDP + MA R+A DV AR P PP +PP LAAV+ ER Sbjct 179 VPDGLWLAVRQYLTRMPQLDPVVGRGMAERLAADVAARTGAPVPPDLPPAAFLAAVVHER 238 Query 237 HRRELLRLRPTLPPAGQAPWAQMAPHRGWPPG 268 RE RPT A AP G PG Sbjct 239 RMRE---ARPTSGAGVVAGERAGAPGNGDVPG 267 >gi|158317593|ref|YP_001510101.1| RDD domain-containing protein [Frankia sp. EAN1pec] gi|158112998|gb|ABW15195.1| RDD domain containing protein [Frankia sp. EAN1pec] Length=316 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 126/295 (43%), Positives = 175/295 (60%), Gaps = 21/295 (7%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQF------DEA 54 M++VVTG+AV +D+++A+L R ++ +ID+ I G L+ TA+ F ++A Sbjct 1 MNQVVTGEAVAIDLRVARLGSRMIAGLIDLAI------QGYALYVTAIAAFLVVQPDNDA 54 Query 55 LTTAFLIIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRAL-AS 113 LT ++ V ++GYP+ ET RGR+VGK+V+GLRVV DDGGP RFR AL R L + Sbjct 55 LTATLFLVIYVGVVLGYPVACETFMRGRTVGKMVLGLRVVRDDGGPIRFRHALTRGLIGA 114 Query 114 VVEI-WMLLGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPR-LGPPPVMPPSLAWWASS 171 VVE +LLG PAVI + S ++KR+GDVFAGTVV+ PR +G P +PP LA W ++ Sbjct 115 VVERPGLLLGLPAVISMVASSRSKRLGDVFAGTVVLQTNVPRTIGALPTVPPPLAGWVAT 174 Query 172 LQLSGLTAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAA 231 L L+G+ A AR+FL RA +L RE++ + ++ A + P PPP P VL+A Sbjct 175 LDLTGVDDELAVRARRFLARAHELSDDSRERIGGALLREIRAAVTPQPPPDAPGWAVLSA 234 Query 232 VLAERHRRELLRLRPTLPPAGQAPWAQMAPH-RGWPPGLSGATPWSPQQPVIPWP 285 VLAER RR RL AG+ P A H G P G S P+ P+P Sbjct 235 VLAERTRRAYGRL-----TAGRQPQAAATGHPPGGPAGRSPGGPYLGSAGYPPFP 284 >gi|302551841|ref|ZP_07304183.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302469459|gb|EFL32552.1| integral membrane protein [Streptomyces viridochromogenes DSM 40736] Length=336 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 117/247 (48%), Positives = 146/247 (60%), Gaps = 6/247 (2%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSE+VTG+AV L+++ A+LP RA++ ++D+ YI + + DEA TA Sbjct 1 MSELVTGEAVALELRPARLPSRALAVLLDLVAAMAVYIAVTVALVVSTASLDEAAQTALS 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 I VL LVG P+ ET + GRS+GK+ GLRVV DDGGP RFR AL R L V+EI M Sbjct 61 IATFVLVLVGAPIAVETLSHGRSLGKMACGLRVVRDDGGPIRFRHALVRGLIGVIEILMT 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGP--RLG--PPPVMPPSLAWWASSLQLSG 176 G A I S +S + +R+GDVFAGT+VV ER P R G PPP PP LA S L LS Sbjct 121 FGIVACIASFVSARGRRLGDVFAGTLVVRERIPVARAGFVPPP--PPWLAGRFSGLDLSA 178 Query 177 LTAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAER 236 + G RQ+L R QLDP + MA R+A D+ R P P GVP LAAV+ ER Sbjct 179 VPEGLWLAVRQYLTRMQQLDPQVGRSMAERLASDLAERTGAPVPQGVPAAAYLAAVVQER 238 Query 237 HRRELLR 243 RE R Sbjct 239 QAREARR 245 >gi|297562683|ref|YP_003681657.1| RDD domain-containing protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847131|gb|ADH69151.1| RDD domain containing protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length=285 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 125/264 (48%), Positives = 160/264 (61%), Gaps = 7/264 (2%) Query 4 VVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLIIF 63 +VTGDAVVLD++ A RA + ID + I I +L D A+T A + Sbjct 21 LVTGDAVVLDLRPAGFATRAAALAIDALVQVIALIALSVLVTWIGRGLDPAITAAVSLSS 80 Query 64 TVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWMLLGS 123 +L LVGYP V+ET +RGRS+GK+ +GLRVV DG PERFRQAL RALA+ VEIW+ G Sbjct 81 VILILVGYPAVFETVSRGRSLGKMALGLRVVGTDGSPERFRQALGRALAAFVEIWLTSGV 140 Query 124 PAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPV-MPPSLAWWASSLQLSGLTAGQA 182 A+I SM++ +RVGD AGT+VV ERG R + MPP LA WA++ +LS L+ A Sbjct 141 VALITSMINRDGRRVGDFVAGTMVVEERGGRPREEVIPMPPHLAAWAATTELSRLSPETA 200 Query 183 EVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRRE-- 240 ARQ+++R +L R +M R+A V A+I+PPPPPG P LAAVLAER RR Sbjct 201 AAARQYVLRYGELAEHTRHEMGVRLADTVAAQISPPPPPGTTPPYFLAAVLAERRRRHEA 260 Query 241 -LLRLRPTLPPAG-QAPWAQMAPH 262 R +P P G Q W PH Sbjct 261 AAQRAQPGYPQGGPQQQW--YGPH 282 >gi|300783071|ref|YP_003763362.1| RDD domain-containing protein [Amycolatopsis mediterranei U32] gi|299792585|gb|ADJ42960.1| RDD domain-containing protein [Amycolatopsis mediterranei U32] gi|340524450|gb|AEK39655.1| RDD domain-containing protein [Amycolatopsis mediterranei S699] Length=316 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 130/315 (42%), Positives = 180/315 (58%), Gaps = 11/315 (3%) Query 2 SEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLI 61 SE+VTG+AVVLD+++A+L RA++ +D+ + F + +M+ + + DE+L L+ Sbjct 5 SELVTGEAVVLDLRVAKLASRALAMALDVLLQFALLLGTIMVLSIVMPAADESLVLTVLL 64 Query 62 IFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALAS-VVEIWM- 119 +F VL +VGYP+V+ET +RGRS+GK+ +GLRVV DGGP RFR AL R LA VV+ W Sbjct 65 VFVVLIMVGYPVVFETLSRGRSLGKMAVGLRVVRVDGGPIRFRHALVRGLAGFVVDFWAL 124 Query 120 -LLGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPV--MPPSLAWWASSLQLSG 176 L G+ AVI S+ S +RVGD AGT+VV ER P MPP L WA+ L L+ Sbjct 125 GLFGAVAVIVSLCSSNGRRVGDFLAGTLVVRERVPAGAAYTAVGMPPGLEGWAAQLDLTR 184 Query 177 LTAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAER 236 L A +RQFL R +L P + + + +A + + P PP VPP LAAVLAER Sbjct 185 LPDDLALASRQFLARFRELRPEAAQALGWGLAQQMGNALGTPVPPEVPPWAFLAAVLAER 244 Query 237 HRRELLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDP--PPQAA 294 R+ R G+ + Q P WPP SG + + V P +P+P PP Sbjct 245 RNRDQARAFQAYAAQGRPGYPQPQPGAPWPPAQSGPSAGAHPVGVRPAAQPEPPTPPSGT 304 Query 295 PWPQQAPDGPGFSPP 309 P P + P F+PP Sbjct 305 PVPVENP----FTPP 315 >gi|182438308|ref|YP_001826027.1| hypothetical protein SGR_4515 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466824|dbj|BAG21344.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length=304 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 108/247 (44%), Positives = 149/247 (61%), Gaps = 3/247 (1%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSE+VTGDAVVL ++ A+LP RA+++ ID+ + F+ +IL ++ A DEA A Sbjct 1 MSELVTGDAVVLGLRPARLPSRALASAIDLAVTFVVFILISVVLGIASATLDEAAVAAIG 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 + +L L+G P+ ET T GRS+GK+ GLRVV DDGGP RFR AL R ++VEI M Sbjct 61 VASFLLVLIGGPVAVETLTHGRSLGKLACGLRVVRDDGGPIRFRHALVRGAMALVEILMT 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 G+ A I S++S + +R+GDVFAGT+V+ ER G +PP W L+A Sbjct 121 FGALASIASLVSARGRRIGDVFAGTLVIRERVAATGRSVSVPPPPPWLVGRFAQLDLSAV 180 Query 181 QAEV---ARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERH 237 E+ RQ+L R QLDP + +A R+AG++VAR P GVP LAAV+ ER Sbjct 181 PDELWLGIRQYLTRMRQLDPGVGRSIAERLAGELVARTGAAAPQGVPAAAFLAAVVHERQ 240 Query 238 RRELLRL 244 R+ R+ Sbjct 241 TRDARRV 247 >gi|326778959|ref|ZP_08238224.1| RDD domain containing protein [Streptomyces cf. griseus XylebKG-1] gi|326659292|gb|EGE44138.1| RDD domain containing protein [Streptomyces griseus XylebKG-1] Length=304 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 107/247 (44%), Positives = 149/247 (61%), Gaps = 3/247 (1%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSE+VTGDAVVL ++ A+LP RA+++ ID+ + F+ ++L ++ A DEA A Sbjct 1 MSELVTGDAVVLGLRPARLPSRALASAIDLAVTFVVFVLISVVLGIASATLDEAAVAAIG 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 + +L L+G P+ ET T GRS+GK+ GLRVV DDGGP RFR AL R ++VEI M Sbjct 61 VASFLLVLIGGPVAVETLTHGRSLGKLACGLRVVRDDGGPIRFRHALVRGAMALVEILMT 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWASSLQLSGLTAG 180 G+ A I S++S + +R+GDVFAGT+V+ ER G +PP W L+A Sbjct 121 FGALASIASLVSARGRRIGDVFAGTLVIRERVAATGRSVSVPPPPPWLVGRFAQLDLSAV 180 Query 181 QAEV---ARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERH 237 E+ RQ+L R QLDP + +A R+AG++VAR P GVP LAAV+ ER Sbjct 181 PDELWLGIRQYLTRMRQLDPGVGRSIAERLAGELVARTGAAAPQGVPAAAFLAAVVHERQ 240 Query 238 RRELLRL 244 R+ R+ Sbjct 241 TRDARRV 247 >gi|302524425|ref|ZP_07276767.1| predicted protein [Streptomyces sp. AA4] gi|302433320|gb|EFL05136.1| predicted protein [Streptomyces sp. AA4] Length=282 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 109/249 (44%), Positives = 152/249 (62%), Gaps = 4/249 (1%) Query 2 SEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFLI 61 S++VTG+AVVLD+++A+L RAV+ ++D+ + +L + FD ALT A ++ Sbjct 5 SDLVTGEAVVLDLRVAKLASRAVAMLLDVLVQAALLLLVFVALMLTAGSFDSALTVALML 64 Query 62 IFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALAS-VVEIWML 120 VL ++GYP+++ET +RGRS+GK+ +GLRVV DGGP FR AL R LA V+ W L Sbjct 65 TMFVLVVIGYPVLFETLSRGRSLGKLALGLRVVRLDGGPISFRHALTRGLAGFFVDFWAL 124 Query 121 --LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPV-MPPSLAWWASSLQLSGL 177 LG+ AVI S+ S +RVGD AGT+V+ ER P+ + MPP L WA+ LSGL Sbjct 125 GFLGAVAVIVSLTSSNGRRVGDYLAGTLVIRERVPQSAQAILTMPPGLEAWAAHFDLSGL 184 Query 178 TAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERH 237 T A +RQ+L R L P + + +A V A I P P G+PP + L AVLAER Sbjct 185 TDDLAMASRQYLGRYHDLRPEAAASLGFGLAQQVSAAIEVPLPYGMPPWVFLTAVLAERR 244 Query 238 RRELLRLRP 246 R+ R+ P Sbjct 245 NRDHARIAP 253 >gi|257069215|ref|YP_003155470.1| hypothetical protein Bfae_20730 [Brachybacterium faecium DSM 4810] gi|256560033|gb|ACU85880.1| predicted membrane protein/domain [Brachybacterium faecium DSM 4810] Length=286 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 101/248 (41%), Positives = 151/248 (61%), Gaps = 5/248 (2%) Query 4 VVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILG---LMLWATALTQFDEALTTAFL 60 ++TGDAV+LD++ A VR +SA ID ++ +G ++G + W A + D+ A + Sbjct 22 LITGDAVLLDLRTASFAVRMLSAAID-GVLQLGLLIGGTIAIAWTAARVELDDGFVAAGI 80 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 + +VLA VGYP++ E GRSVG++VMG RVV DDGGP RQ+L RA+ +++EIW Sbjct 81 VAVSVLAYVGYPVLCELLLHGRSVGRLVMGTRVVRDDGGPVHLRQSLLRAVMAMLEIWST 140 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPV-MPPSLAWWASSLQLSGLTA 179 G+ A+ CS++ +++RVGD+ AGT+V+ ER L P V +P SL W + L Sbjct 141 SGAIALTCSVIDRRSRRVGDLLAGTMVIQERMRSLSPQRVEVPESLGRWVQGADVGRLPL 200 Query 180 GQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHRR 239 + R FL RA ++P R +++ + + +AP PPPG P+ LAAVLAER RR Sbjct 201 TLMQDIRSFLPRAGTINPESRRELSRDLLRRTLPHVAPAPPPGTDPEEFLAAVLAERSRR 260 Query 240 ELLRLRPT 247 + RLR + Sbjct 261 DEERLRRS 268 >gi|294629696|ref|ZP_06708256.1| RDD family domain-containing protein [Streptomyces sp. e14] gi|292833029|gb|EFF91378.1| RDD family domain-containing protein [Streptomyces sp. e14] Length=346 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 132/311 (43%), Positives = 169/311 (55%), Gaps = 25/311 (8%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSE++TG+AV L+++ A+LP R ++ ++D+ + Y+ + A DEA A Sbjct 1 MSELITGEAVALELRPARLPSRMLAVLLDLAVAGAAYVAVSVGVVVATASMDEAAQIALS 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 I +L LVG P+ ET + GRS+GK+ GLRVV DDGGP RFR AL R VVEI M Sbjct 61 IASFLLVLVGGPIAVETLSHGRSLGKLACGLRVVRDDGGPIRFRHALVRGAIGVVEILMT 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSER--GPRLGPPPVMPPSLAWWASSLQLSGLT 178 LG A I S +S + +R+GDVFAGT+VV ER G R P PP LA +L LS + Sbjct 121 LGVVACIASFVSARGRRLGDVFAGTLVVRERVAGGRASFVPPPPPWLAGRFQALDLSAVP 180 Query 179 AGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHR 238 G RQ+L R QLDP + MA R+A ++ AR P PPGVPP + LAAVL ER Sbjct 181 DGLWLAVRQYLTRMHQLDPQVGWGMAQRLATELAARTGTPAPPGVPPAMYLAAVLQERQV 240 Query 239 RELLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWPQ 298 RE R G+AP A PG+ A + PQ P PQ A +PQ Sbjct 241 REARR---AFGNGGRAPVGPGA------PGVPSAAAF-PQGPAF--------PQGAAFPQ 282 Query 299 -----QAPDGP 304 Q P GP Sbjct 283 GPAFPQGPVGP 293 >gi|297200113|ref|ZP_06917510.1| integral membrane protein [Streptomyces sviceus ATCC 29083] gi|197717500|gb|EDY61534.1| integral membrane protein [Streptomyces sviceus ATCC 29083] Length=314 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 129/315 (41%), Positives = 169/315 (54%), Gaps = 8/315 (2%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSE+VTG+AV L+++ A+LP RA++ +ID+T++ + YI + A D+A A Sbjct 1 MSELVTGEAVALELRPARLPSRALAVLIDLTVVMVVYIAVTIAVVAASASLDDAAQVALS 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 I +L LVG P+ ET + GRS+GK+ +GLRVV DDGGP RFR AL R VVEI + Sbjct 61 IAVFLLVLVGGPIAVETLSHGRSLGKLAVGLRVVRDDGGPIRFRHALVRGAIGVVEILLT 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLGPPPVMPPSLAWWA---SSLQLSGL 177 G A I S++S + +R+GDVFAGT+VV ER P + P +PP W A S L LS + Sbjct 121 FGIVACIASLVSARGRRLGDVFAGTLVVRERIP-VAPSGFVPPPPPWLAGRFSELDLSAV 179 Query 178 TAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERH 237 G RQ+L R QLDP + MA R+A D+ R P P PP LAAV+ ER Sbjct 180 PDGLWLAIRQYLTRMHQLDPQVGRAMAERLASDLATRTGAPAPRDAPPGAYLAAVVQERQ 239 Query 238 RRELLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPVIPWPEPDPPPQAAPWP 297 RE R + AG P + P RG A P + P A P P Sbjct 240 ARESRRAFSS-ATAGAGPSPAVGPGRGAGTQGGHAYPGARPTAPPSPPPLSEESSAGPGP 298 Query 298 QQAPDG---PGFSPP 309 P+G GF PP Sbjct 299 SVPPEGRPASGFVPP 313 >gi|345000062|ref|YP_004802916.1| RDD domain containing protein [Streptomyces sp. SirexAA-E] gi|344315688|gb|AEN10376.1| RDD domain containing protein [Streptomyces sp. SirexAA-E] Length=329 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 133/330 (41%), Positives = 176/330 (54%), Gaps = 23/330 (6%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 M+E+VTGDAVVL +Q A+LP RA++ VID+ ++ ++L + A A DEA A Sbjct 1 MNELVTGDAVVLGLQPARLPSRALAIVIDLAVVLTAFMLLSIGLAVAAVSLDEAAGAAIA 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 + +L LVG P+ ET T GRS+GK+ GLRVV DDGGP RFR AL R VVEI Sbjct 61 VATFLLVLVGGPIAVETLTHGRSLGKLACGLRVVRDDGGPIRFRHALVRGAMGVVEILGT 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGP--RLGPPPVMPPSLAWWASSLQLSGLT 178 G A + S++S + +R+GDVFAGT+VV ER P R P PP L + L LS + Sbjct 121 FGVVACVSSLVSARGRRLGDVFAGTLVVRERLPAGRASAVPPPPPWLVGRFAQLDLSAVP 180 Query 179 AGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAERHR 238 RQ+L R QLD A+ +A R++ D+VA P P GVP LAAV+ ER Sbjct 181 DELWLAVRQYLTRMHQLDGAVGWSIAERLSADLVACTGTPAPQGVPAAAYLAAVVNERQT 240 Query 239 RELLRLRPTLPPA-------------GQAPWAQMAPHRGWPPGLSG-----ATPWSPQQP 280 R++ R+ + G+ P A + PP G +TP P +P Sbjct 241 RDVRRVTASAGHGAPMYRSVDVRALEGRRPEAPRTEAQSPPPNPFGPVGTPSTPAGPPRP 300 Query 281 VIPWPEPDPPPQAAPWPQQAPDGP-GFSPP 309 P DP AA P+ P GP GF+PP Sbjct 301 SEPTAPADPDGTAAAPPR--PGGPKGFAPP 328 >gi|328882811|emb|CCA56050.1| possible membrane protein [Streptomyces venezuelae ATCC 10712] Length=328 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 128/285 (45%), Positives = 167/285 (59%), Gaps = 13/285 (4%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 +S +VTGDAVVL +Q A+LP RA++ +ID+ +++ Y+L + A A DEA TA Sbjct 4 VSGLVTGDAVVLGLQPARLPSRALAVLIDLVVVWAAYLLITLGLAVATASLDEAAETAVF 63 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 I +L LVG P+ ET + GRS+GK+ GLRVV DDGGP RFR AL R VVEI M Sbjct 64 IASFLLLLVGVPIAVETLSHGRSLGKLACGLRVVRDDGGPIRFRHALVRGAMGVVEILMT 123 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPRLG----PPPVMPPSLAWWASSLQLSG 176 G A + S++S + +R+GDVFAGT+VV ER P PPP PP L + L LS Sbjct 124 FGVVACVASLVSERGRRLGDVFAGTLVVRERIPAARVLAVPPP--PPWLVGRFAGLDLSA 181 Query 177 LTAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAER 236 + RQ+L RA +LDPA+ ++A R+A ++VAR PPPPGVP LA V+AER Sbjct 182 VPEALWLEIRQYLTRARELDPAVGRRLAERLADELVARTGTPPPPGVPADAYLAGVVAER 241 Query 237 HRRELLRLRPTLPPAGQAPWAQMAPHRGWPPGLSGATPWSPQQPV 281 R+ R L PA AP G P +SG T +P V Sbjct 242 QARD---SRRALAPAS----GMTAPVAGMTPPVSGMTAPAPGMTV 279 >gi|290959909|ref|YP_003491091.1| protein [Streptomyces scabiei 87.22] gi|260649435|emb|CBG72550.1| putative integral membrane protein [Streptomyces scabiei 87.22] Length=317 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 115/244 (48%), Positives = 150/244 (62%), Gaps = 6/244 (2%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSE+VTG+AV L+++ A+LP RA++ ++D+ + + Y+ +++ + DEA TA Sbjct 1 MSELVTGEAVALELRPAKLPSRALAVLLDLVVAVVVYLAVVLVLVLSTAGLDEAAQTAIS 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 I +L LVG P+ ET + GRS+GK+ GLRVV DDGGP RFR AL R VVEI M Sbjct 61 IASFLLVLVGGPIAVETLSHGRSLGKLACGLRVVRDDGGPIRFRHALVRGAVGVVEILMT 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPR----LGPPPVMPPSLAWWASSLQLSG 176 G A I S++S + +R+GDVFAGT+VV ER P PPP PP LA S L LS Sbjct 121 FGVVACIASLVSARGRRLGDVFAGTLVVRERVPSGQTAFVPPP--PPWLAGRFSELDLSA 178 Query 177 LTAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAER 236 + G RQ+L R QLDP + MA R+A D+ AR PPP GVPP LAAV+ ER Sbjct 179 VPDGLWLAVRQYLTRMRQLDPHVGAAMAERLATDLAARTGAPPPYGVPPGAYLAAVVHER 238 Query 237 HRRE 240 RE Sbjct 239 QARE 242 >gi|21221464|ref|NP_627243.1| integral membrane protein [Streptomyces coelicolor A3(2)] gi|289771245|ref|ZP_06530623.1| integral membrane protein [Streptomyces lividans TK24] gi|7649485|emb|CAB88905.1| putative integral membrane protein [Streptomyces coelicolor A3(2)] gi|289701444|gb|EFD68873.1| integral membrane protein [Streptomyces lividans TK24] Length=318 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 115/247 (47%), Positives = 146/247 (60%), Gaps = 6/247 (2%) Query 1 MSEVVTGDAVVLDVQIAQLPVRAVSAVIDITIIFIGYILGLMLWATALTQFDEALTTAFL 60 MSE+VTG+AV L+++ A+LP RA++ ++D+ + Y+ + A D A TA Sbjct 1 MSELVTGEAVALELRPARLPSRALAVLLDLAVAVAVYVAVTIALMVATASLDVAAQTALS 60 Query 61 IIFTVLALVGYPLVWETATRGRSVGKIVMGLRVVSDDGGPERFRQALFRALASVVEIWML 120 I VL LVG P+ ET + GRS+GK+ GLRVV DDGGP RFR +L R L V+EI M Sbjct 61 IATFVLVLVGGPIAVETLSHGRSLGKMACGLRVVRDDGGPIRFRHSLVRGLIGVIEILMT 120 Query 121 LGSPAVICSMLSPKAKRVGDVFAGTVVVSERGP----RLGPPPVMPPSLAWWASSLQLSG 176 LG A + S++S + +R+GDVFAGT+VV ER P PPP PP LA S L LS Sbjct 121 LGVIACVASLVSARGRRLGDVFAGTLVVRERVPFSSAGFMPPP--PPWLAGRFSGLDLSA 178 Query 177 LTAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVARIAPPPPPGVPPQLVLAAVLAER 236 + RQ+L R QLDP + MA R+A DV AR P P VPP LAAVL ER Sbjct 179 VPDDLWLAVRQYLARMGQLDPRVGWAMAERLAADVAARTGAPVPREVPPPAYLAAVLQER 238 Query 237 HRRELLR 243 RE R Sbjct 239 QAREARR 245 >gi|332670986|ref|YP_004453994.1| RDD domain-containing protein [Cellulomonas fimi ATCC 484] gi|332340024|gb|AEE46607.1| RDD domain containing protein [Cellulomonas fimi ATCC 484] Length=276 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 104/230 (46%), Positives = 137/230 (60%), Gaps = 3/230 (1%) Query 35 IGYILGLMLWATALTQFDEALTTAFLIIFTVLALVGYPLVWETATRGRSVGKIVMGLRVV 94 +G +L ++ A +EA +++ + ++ YP V +T TRGRS+GK+ +G+RVV Sbjct 42 LGILLAVVGPAAGTPTSEEAFRIGWVVTLATITVI-YPTVLDTLTRGRSLGKLAVGIRVV 100 Query 95 SDDGGPERFRQALFRALASVVEIWMLLGSPAVICSMLSPKAKRVGDVFAGTVVVSERGPR 154 DDGGP RQAL RAL VVE+W+ GS A+ICSM+ P+ KRVGD+ AGT V RG Sbjct 101 RDDGGPIVLRQALVRALVGVVELWLTAGSVALICSMVHPRGKRVGDILAGTYAVRVRGGA 160 Query 155 LGPPPV-MPPSLAWWASSLQLSGLTAGQAEVARQFLVRAPQLDPALREQMAYRIAGDVVA 213 PV MPP LA WA S ++ L G A RQFL RAP+L PA R ++ R++ +V Sbjct 161 QQRRPVEMPPWLAGWAQSADVARLPDGLALSVRQFLTRAPRLHPASRVELGSRLSAEVAQ 220 Query 214 RIAPPPPPGVPPQLVLAAVLAERHRREL-LRLRPTLPPAGQAPWAQMAPH 262 + P PPPG P+ LAAVLAER REL +LR A A PH Sbjct 221 HVHPAPPPGTHPEAFLAAVLAERRTRELAAQLRQDARDAADARQLHRLPH 270 Lambda K H 0.321 0.138 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 530605165806 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40