BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3697A

Length=74
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15843316|ref|NP_338353.1|  CopG family DNA-binding protein [My...   142    2e-32
gi|306778586|ref|ZP_07416923.1|  antitoxin [Mycobacterium tubercu...   139    1e-31
gi|15610457|ref|NP_217838.1|  hypothetical protein Rv3321c [Mycob...  44.3    0.006
gi|87123275|ref|ZP_01079126.1|  hypothetical protein RS9917_05430...  43.9    0.007
gi|229822545|ref|YP_002884071.1|  CopG family DNA-binding protein...  43.5    0.011
gi|332321844|sp|P0CW33.1|VPB25_MYCTU  RecName: Full=Antitoxin VapB25  41.6    0.036
gi|121636191|ref|YP_976414.1|  antitoxin [Mycobacterium bovis BCG...  41.2    0.057
gi|320105316|ref|YP_004180906.1|  hypothetical protein AciPR4_007...  40.8    0.076
gi|258593479|emb|CBE69818.1|  protein of unknown function [NC10 b...  40.4    0.085
gi|297623625|ref|YP_003705059.1|  CopG family transcriptional reg...  39.7    0.14 
gi|114331351|ref|YP_747573.1|  hypothetical protein Neut_1360 [Ni...  38.5    0.35 
gi|294054234|ref|YP_003547892.1|  hypothetical protein Caka_0698 ...  38.1    0.39 
gi|56478773|ref|YP_160362.1|  hypothetical protein ebA5867 [Aroma...  37.7    0.56 
gi|294339104|emb|CAZ87458.1|  putative transcriptional regulator ...  37.4    0.76 
gi|317967918|ref|ZP_07969308.1|  hypothetical protein SCB02_00122...  37.0    0.96 
gi|289448138|ref|ZP_06437882.1|  antitoxin [Mycobacterium tubercu...  36.6    1.4  
gi|87123103|ref|ZP_01078954.1|  hypothetical protein RS9917_04570...  36.6    1.4  
gi|15609630|ref|NP_217009.1|  hypothetical protein Rv2493 [Mycoba...  36.2    1.5  
gi|340627507|ref|YP_004745959.1|  hypothetical protein MCAN_25321...  36.2    1.5  
gi|337267946|ref|YP_004612001.1|  hypothetical protein Mesop_3461...  35.4    2.8  
gi|344199816|ref|YP_004784142.1|  hypothetical protein Acife_1683...  35.4    3.1  
gi|304413693|ref|ZP_07395137.1|  hypothetical protein REG_0768 [C...  35.4    3.1  
gi|333990438|ref|YP_004523052.1|  hypothetical protein JDM601_179...  35.4    3.2  
gi|297623634|ref|YP_003705068.1|  hypothetical protein Trad_1403 ...  35.0    3.7  
gi|68535082|ref|YP_249787.1|  hypothetical protein jk0020 [Coryne...  34.7    4.6  
gi|289575235|ref|ZP_06455462.1|  antitoxin [Mycobacterium tubercu...  34.7    5.0  
gi|284122510|ref|ZP_06386856.1|  conserved hypothetical protein [...  34.7    5.1  
gi|157382509|gb|ABV48745.1|  Rv2871 [Mycobacterium kansasii ATCC ...  34.3    5.7  
gi|255324694|ref|ZP_05365808.1|  conserved hypothetical protein [...  34.3    5.8  
gi|260662424|ref|ZP_05863319.1|  conserved hypothetical protein [...  34.3    5.9  
gi|206601847|gb|EDZ38330.1|  Hypothetical protein CGL2_11278039 [...  34.3    6.1  
gi|333967819|gb|AEG34583.1|  hypothetical protein Ththe16_2214 [T...  34.3    6.9  
gi|241518560|ref|YP_002979188.1|  hypothetical protein Rleg_5863 ...  33.9    8.2  
gi|184156194|ref|YP_001844534.1|  hypothetical protein LAF_1718 [...  33.9    8.8  
gi|154487586|ref|ZP_02028993.1|  hypothetical protein BIFADO_0144...  33.5    9.9  


>gi|15843316|ref|NP_338353.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551]
 gi|121639612|ref|YP_979836.1| antitoxin [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148663561|ref|YP_001285084.1| hypothetical protein MRA_3733 [Mycobacterium tuberculosis H37Ra]
 48 more sequence titles
 Length=74

 Score =  142 bits (358),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 74/74 (100%), Positives = 74/74 (100%), Gaps = 0/74 (0%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEPPPNVDIRWSTADLRPRVD  60
           MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEPPPNVDIRWSTADLRPRVD
Sbjct  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEPPPNVDIRWSTADLRPRVD  60

Query  61  LDDKDAVWAILDRG  74
           LDDKDAVWAILDRG
Sbjct  61  LDDKDAVWAILDRG  74


>gi|306778586|ref|ZP_07416923.1| antitoxin [Mycobacterium tuberculosis SUMu002]
 gi|306786609|ref|ZP_07424931.1| antitoxin [Mycobacterium tuberculosis SUMu003]
 gi|306790975|ref|ZP_07429297.1| antitoxin [Mycobacterium tuberculosis SUMu004]
 13 more sequence titles
 Length=74

 Score =  139 bits (351),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 73/74 (99%), Positives = 73/74 (99%), Gaps = 0/74 (0%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEPPPNVDIRWSTADLRPRVD  60
           MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEPPPNVDI WSTADLRPRVD
Sbjct  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEPPPNVDICWSTADLRPRVD  60

Query  61  LDDKDAVWAILDRG  74
           LDDKDAVWAILDRG
Sbjct  61  LDDKDAVWAILDRG  74


>gi|15610457|ref|NP_217838.1| hypothetical protein Rv3321c [Mycobacterium tuberculosis H37Rv]
 gi|15842913|ref|NP_337950.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551]
 gi|31794502|ref|NP_856995.1| hypothetical protein Mb3350c [Mycobacterium bovis AF2122/97]
 77 more sequence titles
 Length=80

 Score = 44.3 bits (103),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 21/43 (49%), Positives = 31/43 (73%), Gaps = 0/43 (0%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEPP  43
           MRTT+ +DDD+L A+K R R E++T G++ S+L  QAL  + P
Sbjct  1   MRTTLSIDDDVLLAVKERARREKRTAGEILSDLARQALTNQNP  43


>gi|87123275|ref|ZP_01079126.1| hypothetical protein RS9917_05430 [Synechococcus sp. RS9917]
 gi|86168995|gb|EAQ70251.1| hypothetical protein RS9917_05430 [Synechococcus sp. RS9917]
Length=82

 Score = 43.9 bits (102),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 25/59 (43%), Positives = 34/59 (58%), Gaps = 2/59 (3%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQAL--AAEPPPNVDIRWSTADLRP  57
           MRTT+D+DDD+L+A K   +++R + GQ+ S LL QAL  A   P     R      RP
Sbjct  1   MRTTLDIDDDLLQAAKDLAKQQRMSAGQVVSTLLRQALTQAHHSPSEAAARPHPCGFRP  59


>gi|229822545|ref|YP_002884071.1| CopG family DNA-binding protein [Beutenbergia cavernae DSM 12333]
 gi|229568458|gb|ACQ82309.1| CopG family DNA-binding protein [Beutenbergia cavernae DSM 12333]
Length=80

 Score = 43.5 bits (101),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 28/72 (39%), Positives = 37/72 (52%), Gaps = 0/72 (0%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEPPPNVDIRWSTADLRPRVD  60
           MRTTI LDDD+  A +R +RE    LG+  +EL    L    P     R  TADL  R+D
Sbjct  1   MRTTIRLDDDVAAAAERLRRERHIGLGEAVNELARAGLHRGAPAERRYRQRTADLGLRID  60

Query  61  LDDKDAVWAILD  72
           + +      +LD
Sbjct  61  VSNVAEALELLD  72


>gi|332321844|sp|P0CW33.1|VPB25_MYCTU RecName: Full=Antitoxin VapB25
Length=85

 Score = 41.6 bits (96),  Expect = 0.036, Method: Compositional matrix adjust.
 Identities = 26/78 (34%), Positives = 40/78 (52%), Gaps = 4/78 (5%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAE----PPPNVDIRWSTADLR  56
           MRTT+ + D++L   KRR RE  ++LG +  + L + LAA       P V +  +    R
Sbjct  1   MRTTVSISDELLATAKRRARERGQSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  60

Query  57  PRVDLDDKDAVWAILDRG  74
           P +DL     +  +LD G
Sbjct  61  PGIDLTSNTVLSEVLDEG  78


>gi|121636191|ref|YP_976414.1| antitoxin [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224988664|ref|YP_002643351.1| hypothetical protein, antitoxin [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|121491838|emb|CAL70300.1| Conserved hypothetical protein, antitoxin [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 gi|224771777|dbj|BAH24583.1| hypothetical protein, antitoxin [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|341600207|emb|CCC62876.1| conserved hypothetical protein, antitoxin [Mycobacterium bovis 
BCG str. Moreau RDJ]
Length=85

 Score = 41.2 bits (95),  Expect = 0.057, Method: Compositional matrix adjust.
 Identities = 26/78 (34%), Positives = 40/78 (52%), Gaps = 4/78 (5%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAE----PPPNVDIRWSTADLR  56
           MRTT+ + D++L   KRR RE  ++LG +  + L + LAA       P V +  +    R
Sbjct  1   MRTTVSISDELLATAKRRARERGQSLGAVIEDALRRELAAARTGGARPTVPVFDAGTGPR  60

Query  57  PRVDLDDKDAVWAILDRG  74
           P +DL     +  +LD G
Sbjct  61  PGIDLTSNRVLSEVLDEG  78


>gi|320105316|ref|YP_004180906.1| hypothetical protein AciPR4_0071 [Terriglobus saanensis SP1PR4]
 gi|319923837|gb|ADV80912.1| hypothetical protein AciPR4_0071 [Terriglobus saanensis SP1PR4]
Length=80

 Score = 40.8 bits (94),  Expect = 0.076, Method: Compositional matrix adjust.
 Identities = 27/76 (36%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALA---AEPPPNVDIRWSTADLRP  57
           MRTT+ +DDD+   LKR  R   + + Q  +  L  ALA    EP P   ++     L P
Sbjct  1   MRTTLTIDDDVAALLKREMRRSGEPMKQAINRCLRTALAVKSTEPAPKFKVQSRKLGLLP  60

Query  58  RVDLDDKDAVWAILDR  73
            +  D+ +AV   LDR
Sbjct  61  GMSYDNLEAVLDQLDR  76


>gi|258593479|emb|CBE69818.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
Length=53

 Score = 40.4 bits (93),  Expect = 0.085, Method: Compositional matrix adjust.
 Identities = 21/53 (40%), Positives = 34/53 (65%), Gaps = 8/53 (15%)

Query  26  LGQLASELLAQALA-----AEPPPNVDIRWSTADLRPRVDLDDKDAVWAILDR  73
           +G++ S+LLA+ALA      +PP     +W++  +   VDL DK+AV+ +LDR
Sbjct  1   MGKIVSQLLAEALARRTRTPQPP---KFQWTSRPMHALVDLSDKEAVYGVLDR  50


>gi|297623625|ref|YP_003705059.1| CopG family transcriptional regulator [Truepera radiovictrix 
DSM 17093]
 gi|297164805|gb|ADI14516.1| transcriptional regulator, CopG family [Truepera radiovictrix 
DSM 17093]
Length=82

 Score = 39.7 bits (91),  Expect = 0.14, Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 42/80 (53%), Gaps = 9/80 (11%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAA------EPP--PNVDIRWST  52
           MRTTI LDD++LR  KR   E  +TL  +  E L + LA        PP  P V  R   
Sbjct  1   MRTTIRLDDELLREAKRLAAETNQTLTAVIEEALRERLARRKGARDRPPFTPKV-YRGPA  59

Query  53  ADLRPRVDLDDKDAVWAILD  72
             L+P VDLDD  A+  +++
Sbjct  60  KGLQPGVDLDDNAALLDLME  79


>gi|114331351|ref|YP_747573.1| hypothetical protein Neut_1360 [Nitrosomonas eutropha C91]
 gi|114308365|gb|ABI59608.1| conserved hypothetical protein [Nitrosomonas eutropha C91]
Length=92

 Score = 38.5 bits (88),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 18/41 (44%), Positives = 28/41 (69%), Gaps = 0/41 (0%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAE  41
           +RTTID+++D+L A K   R E  ++G++ S L+ QALA  
Sbjct  12  VRTTIDIENDVLAAAKEIARTENVSVGKVISRLVRQALAGH  52


>gi|294054234|ref|YP_003547892.1| hypothetical protein Caka_0698 [Coraliomargarita akajimensis 
DSM 45221]
 gi|293613567|gb|ADE53722.1| conserved hypothetical protein [Coraliomargarita akajimensis 
DSM 45221]
Length=84

 Score = 38.1 bits (87),  Expect = 0.39, Method: Compositional matrix adjust.
 Identities = 22/58 (38%), Positives = 33/58 (57%), Gaps = 0/58 (0%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEPPPNVDIRWSTADLRPR  58
           MRTTID+ D IL ALK R   E++ + ++ +++L + LAA       +R  T  L  R
Sbjct  1   MRTTIDIKDAILDALKERAHLEKRPMTKVVNDVLEKGLAAPTKQTKKVRLKTYGLGIR  58


>gi|56478773|ref|YP_160362.1| hypothetical protein ebA5867 [Aromatoleum aromaticum EbN1]
 gi|56314816|emb|CAI09461.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length=81

 Score = 37.7 bits (86),  Expect = 0.56, Method: Compositional matrix adjust.
 Identities = 17/53 (33%), Positives = 32/53 (61%), Gaps = 0/53 (0%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEPPPNVDIRWSTA  53
           MRTT+D++ D+L A K   R++  ++G++ S+L+ + L     P   +R + A
Sbjct  1   MRTTLDIESDVLAAAKEIARQQHTSVGKVISQLVRRTLIGAAAPQTVVRQTPA  53


>gi|294339104|emb|CAZ87458.1| putative transcriptional regulator [Thiomonas sp. 3As]
Length=75

 Score = 37.4 bits (85),  Expect = 0.76, Method: Compositional matrix adjust.
 Identities = 18/42 (43%), Positives = 27/42 (65%), Gaps = 0/42 (0%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEP  42
           MRTT+ +DDD+L A +     + K++G++ S L  QAL  EP
Sbjct  1   MRTTVSIDDDVLNAARHLAARQHKSVGEVLSALARQALRREP  42


>gi|317967918|ref|ZP_07969308.1| hypothetical protein SCB02_00122 [Synechococcus sp. CB0205]
Length=86

 Score = 37.0 bits (84),  Expect = 0.96, Method: Compositional matrix adjust.
 Identities = 19/39 (49%), Positives = 26/39 (67%), Gaps = 0/39 (0%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALA  39
           MRTT+ LDDD+L A K   R+ ++ +G + SEL  Q LA
Sbjct  8   MRTTLSLDDDVLAAAKVLARQRKQPIGSVISELARQGLA  46


>gi|289448138|ref|ZP_06437882.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
 gi|289421096|gb|EFD18297.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
Length=73

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 17/38 (45%), Positives = 26/38 (69%), Gaps = 0/38 (0%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQAL  38
           MRTT+DLDDD++ A +     +R++LG + SEL  + L
Sbjct  1   MRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL  38


>gi|87123103|ref|ZP_01078954.1| hypothetical protein RS9917_04570 [Synechococcus sp. RS9917]
 gi|86168823|gb|EAQ70079.1| hypothetical protein RS9917_04570 [Synechococcus sp. RS9917]
Length=79

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 21/49 (43%), Positives = 31/49 (64%), Gaps = 4/49 (8%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQAL----AAEPPPN  45
           MRTT+ LDDD+L A +   R++  ++G++ SEL  QAL      E PP+
Sbjct  1   MRTTLQLDDDVLDAARVLARQQHLSVGEVISELARQALRRPAGLEEPPS  49


>gi|15609630|ref|NP_217009.1| hypothetical protein Rv2493 [Mycobacterium tuberculosis H37Rv]
 gi|15842021|ref|NP_337058.1| hypothetical protein MT2568 [Mycobacterium tuberculosis CDC1551]
 gi|31793673|ref|NP_856166.1| hypothetical protein Mb2521 [Mycobacterium bovis AF2122/97]
 65 more sequence titles
 Length=73

 Score = 36.2 bits (82),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 17/38 (45%), Positives = 26/38 (69%), Gaps = 0/38 (0%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQAL  38
           MRTT+DLDDD++ A +     +R++LG + SEL  + L
Sbjct  1   MRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL  38


>gi|340627507|ref|YP_004745959.1| hypothetical protein MCAN_25321 [Mycobacterium canettii CIPT 
140010059]
 gi|340005697|emb|CCC44863.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=73

 Score = 36.2 bits (82),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 17/38 (45%), Positives = 26/38 (69%), Gaps = 0/38 (0%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQAL  38
           MRTT+DLDDD++ A +     +R++LG + SEL  + L
Sbjct  1   MRTTLDLDDDVIAAARELASSQRRSLGSVISELARRGL  38


>gi|337267946|ref|YP_004612001.1| hypothetical protein Mesop_3461 [Mesorhizobium opportunistum 
WSM2075]
 gi|336028256|gb|AEH87907.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075]
Length=87

 Score = 35.4 bits (80),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 29/84 (35%), Positives = 44/84 (53%), Gaps = 19/84 (22%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQA---------------LAAEP--P  43
           MRTT+ +DDD+L A K   R++ +++G++ S+L  Q+               L+A P  P
Sbjct  1   MRTTLAIDDDVLLAAKAMARQQDRSIGEVISDLARQSLRRPQAGGERNGIPLLSARPDDP  60

Query  44  PNVDIRWSTA--DLRPRVDLDDKD  65
           P VD+    A  D  PR+ L D D
Sbjct  61  PLVDLEMINALRDALPRLSLLDVD  84


>gi|344199816|ref|YP_004784142.1| hypothetical protein Acife_1683 [Acidithiobacillus ferrivorans 
SS3]
 gi|343775260|gb|AEM47816.1| hypothetical protein Acife_1683 [Acidithiobacillus ferrivorans 
SS3]
Length=77

 Score = 35.4 bits (80),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 18/38 (48%), Positives = 25/38 (66%), Gaps = 0/38 (0%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQAL  38
           MRTT+ +DDD+L A K     + K++G + S LL QAL
Sbjct  1   MRTTLAIDDDVLAAAKGLADRQHKSVGAVVSALLRQAL  38


>gi|304413693|ref|ZP_07395137.1| hypothetical protein REG_0768 [Candidatus Regiella insecticola 
LSR1]
 gi|304283784|gb|EFL92178.1| hypothetical protein REG_0768 [Candidatus Regiella insecticola 
LSR1]
Length=82

 Score = 35.4 bits (80),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 20/44 (46%), Positives = 25/44 (57%), Gaps = 0/44 (0%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEPPP  44
           MRTT+ +DDDIL A K     + K+LG + S L  QAL     P
Sbjct  9   MRTTLAIDDDILAAAKGLAARQNKSLGAVISSLARQALHVPSHP  52


>gi|333990438|ref|YP_004523052.1| hypothetical protein JDM601_1798 [Mycobacterium sp. JDM601]
 gi|333486406|gb|AEF35798.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=83

 Score = 35.4 bits (80),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 24/63 (39%), Positives = 34/63 (54%), Gaps = 3/63 (4%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEPPPNVDIRWSTADLR-PRV  59
           MRTT+ LDDD+ + ++RR  E + +  Q  +E +    A    P    R  TADL  P V
Sbjct  1   MRTTVTLDDDVEQLIRRRMAERQLSFKQALNEAIRDGSAGRATPQFQTR--TADLGVPSV  58

Query  60  DLD  62
           +LD
Sbjct  59  NLD  61


>gi|297623634|ref|YP_003705068.1| hypothetical protein Trad_1403 [Truepera radiovictrix DSM 17093]
 gi|297164814|gb|ADI14525.1| conserved hypothetical protein [Truepera radiovictrix DSM 17093]
Length=80

 Score = 35.0 bits (79),  Expect = 3.7, Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 36/65 (56%), Gaps = 3/65 (4%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAA-EPPPNVD-IRWSTADL-RP  57
           MRTT+ LDDD+ + L+R Q+E  ++   L +  L + L A E P   D  R  T  L R 
Sbjct  1   MRTTLTLDDDVEKRLRRLQKERGESFKSLVNRALREGLVALEQPRATDAFRTQTVSLGRA  60

Query  58  RVDLD  62
            V+LD
Sbjct  61  LVNLD  65


>gi|68535082|ref|YP_249787.1| hypothetical protein jk0020 [Corynebacterium jeikeium K411]
 gi|68535694|ref|YP_250399.1| hypothetical protein jk0622 [Corynebacterium jeikeium K411]
 gi|260579580|ref|ZP_05847450.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 
43734]
 gi|68262681|emb|CAI36169.1| hypothetical protein jk0020 [Corynebacterium jeikeium K411]
 gi|68263293|emb|CAI36781.1| hypothetical protein jk0622 [Corynebacterium jeikeium K411]
 gi|258602295|gb|EEW15602.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC 
43734]
Length=80

 Score = 34.7 bits (78),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 28/83 (34%), Positives = 36/83 (44%), Gaps = 17/83 (20%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEPPPNVDIRWSTADLRPR--  58
           MRTTI+L   +L   K + +    TL     E +  AL  E       R ST D      
Sbjct  1   MRTTINLPPKLLEETKVQAKANNVTLSSYVEEAVRAALKKE------ARISTEDTPVNLP  54

Query  59  ---------VDLDDKDAVWAILD  72
                    VDL +K+AVWA+LD
Sbjct  55  SFDCGGPALVDLSNKEAVWAVLD  77


>gi|289575235|ref|ZP_06455462.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|339632557|ref|YP_004724199.1| hypothetical protein MAF_25460 [Mycobacterium africanum GM041182]
 gi|289539666|gb|EFD44244.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|339331913|emb|CCC27616.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=74

 Score = 34.7 bits (78),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 16/38 (43%), Positives = 26/38 (69%), Gaps = 0/38 (0%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQAL  38
           MRTT+ +DDD+L  ++   R E K++G + SEL  ++L
Sbjct  1   MRTTLQIDDDVLEDVRSIARSEGKSVGAVISELARRSL  38


>gi|284122510|ref|ZP_06386856.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283829354|gb|EFC33750.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
Length=79

 Score = 34.7 bits (78),  Expect = 5.1, Method: Compositional matrix adjust.
 Identities = 24/76 (32%), Positives = 40/76 (53%), Gaps = 4/76 (5%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALA--AEPPPNVDIRWSTADLR--  56
           MRTT++LDD + +A K R   E  T+ Q+  + L + L    +      +RW T   R  
Sbjct  1   MRTTLNLDDRLYQAAKIRATSEGTTVTQVIQDALKEFLHRPNQTRSKYKLRWPTQKGRLL  60

Query  57  PRVDLDDKDAVWAILD  72
           P V+ DD+ +++  +D
Sbjct  61  PGVNPDDRTSLYDAMD  76


>gi|157382509|gb|ABV48745.1| Rv2871 [Mycobacterium kansasii ATCC 12478]
Length=85

 Score = 34.3 bits (77),  Expect = 5.7, Method: Compositional matrix adjust.
 Identities = 25/80 (32%), Positives = 38/80 (48%), Gaps = 8/80 (10%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEPPP-NVDIRW-----STAD  54
           MRTTI +DD++ R +K R     +T+  +  + +   L   PP  +   R+      +  
Sbjct  1   MRTTIRIDDELYREVKARAARSGRTVAAVLEDAVRCGL--NPPGQSAAGRYRVQPIGSGG  58

Query  55  LRPRVDLDDKDAVWAILDRG  74
           LRP VDL    AV   +D G
Sbjct  59  LRPGVDLSSNAAVAEAMDEG  78


>gi|255324694|ref|ZP_05365808.1| conserved hypothetical protein [Corynebacterium tuberculostearicum 
SK141]
 gi|311739250|ref|ZP_07713087.1| conserved hypothetical protein [Corynebacterium pseudogenitalium 
ATCC 33035]
 gi|255298169|gb|EET77472.1| conserved hypothetical protein [Corynebacterium tuberculostearicum 
SK141]
 gi|311305676|gb|EFQ81742.1| conserved hypothetical protein [Corynebacterium pseudogenitalium 
ATCC 33035]
Length=80

 Score = 34.3 bits (77),  Expect = 5.8, Method: Compositional matrix adjust.
 Identities = 28/83 (34%), Positives = 36/83 (44%), Gaps = 17/83 (20%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEPPPNVDIRWSTADLRPR--  58
           MRTTI+L   +L   K + +    TL     E +  AL  E       R ST D      
Sbjct  1   MRTTINLPPKLLEETKIQAKANNVTLSSYVEEAVRAALKKE------ARISTEDTPVNLP  54

Query  59  ---------VDLDDKDAVWAILD  72
                    VDL +K+AVWA+LD
Sbjct  55  SFDCGGPALVDLSNKEAVWAVLD  77


>gi|260662424|ref|ZP_05863319.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
 gi|260553115|gb|EEX26058.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
Length=116

 Score = 34.3 bits (77),  Expect = 5.9, Method: Compositional matrix adjust.
 Identities = 16/34 (48%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  4   TIDLDDDILRALKRRQREERKTLGQLASELLAQA  37
           TI LD+D  RAL++R + ER+ L ++A+ LL  A
Sbjct  7   TISLDEDAFRALEKRAQSERRPLEEVAASLLTTA  40


>gi|206601847|gb|EDZ38330.1| Hypothetical protein CGL2_11278039 [Leptospirillum sp. Group 
II '5-way CG']
Length=152

 Score = 34.3 bits (77),  Expect = 6.1, Method: Compositional matrix adjust.
 Identities = 16/38 (43%), Positives = 27/38 (72%), Gaps = 0/38 (0%)

Query  1    MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQAL  38
            MRTT+D+D+D+L   +   R + K++G++ S+L  QAL
Sbjct  73   MRTTLDIDEDVLETARELARRQGKSIGKVISDLGRQAL  110


>gi|333967819|gb|AEG34583.1| hypothetical protein Ththe16_2214 [Thermus thermophilus SG0.5JP17-16]
Length=80

 Score = 34.3 bits (77),  Expect = 6.9, Method: Compositional matrix adjust.
 Identities = 25/74 (34%), Positives = 36/74 (49%), Gaps = 4/74 (5%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQAL--AAEPPPNVDIRWSTADLRPR  58
           MRTT+DL D + R LK +   E KTL +L    L + L     P P    R   A    R
Sbjct  1   MRTTLDLPDPLYRRLKLQAAREGKTLRELVIRYLEEGLRRGGSPGPRPLPRVPEAGR--R  58

Query  59  VDLDDKDAVWAILD  72
           + +   + +WA+L+
Sbjct  59  IPVRTHEELWALLE  72


>gi|241518560|ref|YP_002979188.1| hypothetical protein Rleg_5863 [Rhizobium leguminosarum bv. trifolii 
WSM1325]
 gi|240862973|gb|ACS60637.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii 
WSM1325]
Length=75

 Score = 33.9 bits (76),  Expect = 8.2, Method: Compositional matrix adjust.
 Identities = 16/42 (39%), Positives = 28/42 (67%), Gaps = 0/42 (0%)

Query  1   MRTTIDLDDDILRALKRRQREERKTLGQLASELLAQALAAEP  42
           MRTT+ +DDD+L A K    ++ +++G++ SEL  ++L   P
Sbjct  1   MRTTLAIDDDVLTAAKAMATQQHRSVGEVISELARRSLRRPP  42


>gi|184156194|ref|YP_001844534.1| hypothetical protein LAF_1718 [Lactobacillus fermentum IFO 3956]
 gi|227515266|ref|ZP_03945315.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 
14931]
 gi|183227538|dbj|BAG28054.1| hypothetical protein [Lactobacillus fermentum IFO 3956]
 gi|227086368|gb|EEI21680.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 
14931]
Length=116

 Score = 33.9 bits (76),  Expect = 8.8, Method: Compositional matrix adjust.
 Identities = 15/34 (45%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  4   TIDLDDDILRALKRRQREERKTLGQLASELLAQA  37
           TI LD+D  RAL++R + ER+ L ++A+ +L  A
Sbjct  7   TISLDEDAFRALEKRAQSERRPLEEVAASMLTTA  40


>gi|154487586|ref|ZP_02028993.1| hypothetical protein BIFADO_01443 [Bifidobacterium adolescentis 
L2-32]
 gi|154083715|gb|EDN82760.1| hypothetical protein BIFADO_01443 [Bifidobacterium adolescentis 
L2-32]
Length=1023

 Score = 33.5 bits (75),  Expect = 9.9, Method: Compositional matrix adjust.
 Identities = 19/58 (33%), Positives = 30/58 (52%), Gaps = 0/58 (0%)

Query  11   ILRALKRRQREERKTLGQLASELLAQALAAEPPPNVDIRWSTADLRPRVDLDDKDAVW  68
            IL A++R   E  +TLGQ    L   +LAA P   ++     AD+  + D+ + D +W
Sbjct  562  ILAAVERLSAEAYRTLGQAYRPLGTASLAAVPGVRINAAGHVADIADQSDVLESDLIW  619



Lambda     K      H
   0.319    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131500792262


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40