BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3697c
Length=145
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610833|ref|NP_218214.1| hypothetical protein Rv3697c [Mycob... 292 9e-78
gi|340628670|ref|YP_004747122.1| hypothetical protein MCAN_37181... 291 2e-77
gi|31794868|ref|NP_857361.1| hypothetical protein Mb3723c [Mycob... 290 7e-77
gi|306805540|ref|ZP_07442208.1| toxin [Mycobacterium tuberculosi... 289 1e-76
gi|258593480|emb|CBE69819.1| Conserved membrane protein [NC10 ba... 117 4e-25
gi|302542963|ref|ZP_07295305.1| putative toxin-antitoxin system,... 88.6 3e-16
gi|229822546|ref|YP_002884072.1| PIN domain-containing protein f... 83.6 8e-15
gi|116748338|ref|YP_845025.1| PilT domain-containing protein [Sy... 82.8 1e-14
gi|294054235|ref|YP_003547893.1| PIN domain-containing protein f... 82.0 3e-14
gi|258593410|emb|CBE69749.1| conserved protein of unknown functi... 75.9 2e-12
gi|320105317|ref|YP_004180907.1| PIN domain-containing protein f... 75.9 2e-12
gi|240170675|ref|ZP_04749334.1| PIN domain protein family protei... 75.5 3e-12
gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Ca... 75.5 3e-12
gi|308270136|emb|CBX26748.1| hypothetical protein N47_A07770 [un... 73.2 1e-11
gi|88810689|ref|ZP_01125946.1| hypothetical protein NB231_16453 ... 72.0 3e-11
gi|300780204|ref|ZP_07090060.1| PilT domain protein [Corynebacte... 70.5 7e-11
gi|145221522|ref|YP_001132200.1| PilT domain-containing protein ... 69.7 1e-10
gi|258593476|emb|CBE69815.1| conserved protein of unknown functi... 67.4 6e-10
gi|297623633|ref|YP_003705067.1| PIN domain-containing protein [... 67.4 7e-10
gi|296130776|ref|YP_003638026.1| PIN domain protein family prote... 67.0 8e-10
gi|333991903|ref|YP_004524517.1| PIN domain-containing protein f... 67.0 9e-10
gi|88811999|ref|ZP_01127252.1| hypothetical protein NB231_06401 ... 65.5 3e-09
gi|297623624|ref|YP_003705058.1| PIN domain-containing protein [... 64.7 4e-09
gi|340627865|ref|YP_004746317.1| hypothetical protein MCAN_28941... 63.2 1e-08
gi|121638754|ref|YP_978978.1| hypothetical protein BCG_2894 [Myc... 62.8 2e-08
gi|15610009|ref|NP_217388.1| hypothetical protein Rv2872 [Mycoba... 62.8 2e-08
gi|284122509|ref|ZP_06386855.1| PIN domain family protein [Candi... 62.4 2e-08
gi|289758220|ref|ZP_06517598.1| conserved hypothetical protein [... 62.4 2e-08
gi|333990439|ref|YP_004523053.1| hypothetical protein JDM601_179... 60.8 6e-08
gi|15609240|ref|NP_216619.1| hypothetical protein Rv2103c [Mycob... 60.8 6e-08
gi|307084750|ref|ZP_07493863.1| toxin [Mycobacterium tuberculosi... 60.8 7e-08
gi|15841594|ref|NP_336631.1| hypothetical protein MT2163 [Mycoba... 60.8 7e-08
gi|297567544|ref|YP_003686516.1| PIN domain-containing protein f... 58.5 3e-07
gi|340627115|ref|YP_004745567.1| hypothetical protein MCAN_21291... 58.5 3e-07
gi|322435687|ref|YP_004217899.1| PIN domain protein family prote... 56.2 2e-06
gi|289750699|ref|ZP_06510077.1| conserved hypothetical protein [... 55.5 2e-06
gi|160898241|ref|YP_001563823.1| PilT domain-containing protein ... 54.3 6e-06
gi|15608382|ref|NP_215758.1| hypothetical protein Rv1242 [Mycoba... 51.6 4e-05
gi|240168912|ref|ZP_04747571.1| hypothetical protein MkanA1_0634... 50.4 9e-05
gi|340625767|ref|YP_004744219.1| hypothetical protein MCAN_07521... 50.1 1e-04
gi|253797202|ref|YP_003030203.1| toxin [Mycobacterium tuberculos... 49.7 2e-04
gi|306774366|ref|ZP_07412703.1| toxin [Mycobacterium tuberculosi... 49.3 2e-04
gi|15607889|ref|NP_215263.1| hypothetical protein Rv0749 [Mycoba... 48.9 2e-04
gi|121636671|ref|YP_976894.1| hypothetical protein BCG_0799 [Myc... 48.9 2e-04
gi|289573902|ref|ZP_06454129.1| toxin [Mycobacterium tuberculosi... 48.9 2e-04
gi|340625313|ref|YP_004743765.1| hypothetical protein MCAN_02841... 48.1 4e-04
gi|15607418|ref|NP_214791.1| hypothetical protein Rv0277c [Mycob... 48.1 5e-04
gi|33865109|ref|NP_896668.1| hypothetical protein SYNW0573 [Syne... 47.4 7e-04
gi|308273612|emb|CBX30214.1| unknown protein [uncultured Desulfo... 47.0 0.001
gi|147679127|ref|YP_001213342.1| nucleic acid-binding protein [P... 46.6 0.001
>gi|15610833|ref|NP_218214.1| hypothetical protein Rv3697c [Mycobacterium tuberculosis H37Rv]
gi|15843315|ref|NP_338352.1| hypothetical protein MT3799 [Mycobacterium tuberculosis CDC1551]
gi|148663560|ref|YP_001285083.1| hypothetical protein MRA_3732 [Mycobacterium tuberculosis H37Ra]
62 more sequence titles
Length=145
Score = 292 bits (748), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 144/145 (99%), Positives = 145/145 (100%), Gaps = 0/145 (0%)
Query 1 VSETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGA 60
+SETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGA
Sbjct 1 MSETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGA 60
Query 61 PLAPEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHG 120
PLAPEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHG
Sbjct 61 PLAPEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHG 120
Query 121 IATIWSHDRDFRKFEGIRIRDPFSG 145
IATIWSHDRDFRKFEGIRIRDPFSG
Sbjct 121 IATIWSHDRDFRKFEGIRIRDPFSG 145
>gi|340628670|ref|YP_004747122.1| hypothetical protein MCAN_37181 [Mycobacterium canettii CIPT
140010059]
gi|340006860|emb|CCC46049.1| putative conserved membrane protein [Mycobacterium canettii CIPT
140010059]
Length=145
Score = 291 bits (745), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/145 (99%), Positives = 145/145 (100%), Gaps = 0/145 (0%)
Query 1 VSETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGA 60
+SETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGA
Sbjct 1 MSETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGA 60
Query 61 PLAPEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHG 120
PLAPEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHG
Sbjct 61 PLAPEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHG 120
Query 121 IATIWSHDRDFRKFEGIRIRDPFSG 145
IATIWSHDRDFRKFEGIRIRDPF+G
Sbjct 121 IATIWSHDRDFRKFEGIRIRDPFAG 145
>gi|31794868|ref|NP_857361.1| hypothetical protein Mb3723c [Mycobacterium bovis AF2122/97]
gi|121639611|ref|YP_979835.1| hypothetical protein BCG_3756c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224992107|ref|YP_002646796.1| hypothetical protein JTY_3757 [Mycobacterium bovis BCG str. Tokyo
172]
10 more sequence titles
Length=145
Score = 290 bits (741), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 143/145 (99%), Positives = 144/145 (99%), Gaps = 0/145 (0%)
Query 1 VSETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGA 60
+SETFDVDVLVHATHRASPFHDKAKTLVERFLA PGLVYLLWPVALGYLRVVTHPTLLGA
Sbjct 1 MSETFDVDVLVHATHRASPFHDKAKTLVERFLARPGLVYLLWPVALGYLRVVTHPTLLGA 60
Query 61 PLAPEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHG 120
PLAPEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHG
Sbjct 61 PLAPEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHG 120
Query 121 IATIWSHDRDFRKFEGIRIRDPFSG 145
IATIWSHDRDFRKFEGIRIRDPFSG
Sbjct 121 IATIWSHDRDFRKFEGIRIRDPFSG 145
>gi|306805540|ref|ZP_07442208.1| toxin [Mycobacterium tuberculosis SUMu007]
gi|306969936|ref|ZP_07482597.1| toxin [Mycobacterium tuberculosis SUMu009]
gi|308347839|gb|EFP36690.1| toxin [Mycobacterium tuberculosis SUMu007]
gi|308352492|gb|EFP41343.1| toxin [Mycobacterium tuberculosis SUMu009]
Length=145
Score = 289 bits (739), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 143/145 (99%), Positives = 144/145 (99%), Gaps = 0/145 (0%)
Query 1 VSETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGA 60
+SETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYL VVTHPTLLGA
Sbjct 1 MSETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLWVVTHPTLLGA 60
Query 61 PLAPEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHG 120
PLAPEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHG
Sbjct 61 PLAPEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHG 120
Query 121 IATIWSHDRDFRKFEGIRIRDPFSG 145
IATIWSHDRDFRKFEGIRIRDPFSG
Sbjct 121 IATIWSHDRDFRKFEGIRIRDPFSG 145
>gi|258593480|emb|CBE69819.1| Conserved membrane protein [NC10 bacterium 'Dutch sediment']
Length=144
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/143 (40%), Positives = 84/143 (59%), Gaps = 0/143 (0%)
Query 1 VSETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGA 60
+S + DV+VL++A+ +SP H +A +E P L + W + YLR+ T+P +
Sbjct 1 MSYSVDVNVLLYASDTSSPKHPEAIRFMEERAFDPDLFCIAWSTLIAYLRIATYPRIFAR 60
Query 61 PLAPEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHG 120
PL+P A+ N+E S P VR + E F YR V RGNLVPDAHL L++ HG
Sbjct 61 PLSPSDALGNVESLLSLPRVRTLSEGEDFLDGYRGVTAHFPVRGNLVPDAHLATLLQQHG 120
Query 121 IATIWSHDRDFRKFEGIRIRDPF 143
+ +++ DRDFRKF+ + + DPF
Sbjct 121 VGRLYTADRDFRKFDFLEVVDPF 143
>gi|302542963|ref|ZP_07295305.1| putative toxin-antitoxin system, toxin component, PIN family
[Streptomyces hygroscopicus ATCC 53653]
gi|302460581|gb|EFL23674.1| putative toxin-antitoxin system, toxin component, PIN family
[Streptomyces himastatinicus ATCC 53653]
Length=144
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/140 (32%), Positives = 69/140 (50%), Gaps = 0/140 (0%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
D ++LV+A SPFH A ++ L WP + + THP + P E
Sbjct 5 DTNILVYAHRSDSPFHSAAAAQIKGLAEARAPWALPWPCLHEFFSIATHPRIYQPPSTAE 64
Query 66 VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATIW 125
A+ I+ + S P V + EA+ +WP R++ + K G +V D + AL + G+ +W
Sbjct 65 QAIAQIDAWLSSPSVVLLSEADTYWPTLRQMLEDGKVAGPMVHDGRIAALCANSGVRELW 124
Query 126 SHDRDFRKFEGIRIRDPFSG 145
S DRDF +F + R+P G
Sbjct 125 SADRDFSRFPALTTRNPLHG 144
>gi|229822546|ref|YP_002884072.1| PIN domain-containing protein family protein [Beutenbergia cavernae
DSM 12333]
gi|229568459|gb|ACQ82310.1| PIN domain protein family protein [Beutenbergia cavernae DSM
12333]
Length=143
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/137 (37%), Positives = 68/137 (50%), Gaps = 1/137 (0%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
D +VL++A SPFH AK +E L+GP V L WP L + R+ +HP PL P
Sbjct 4 DANVLLYAVDTGSPFHRAAKEWLEEALSGPARVGLPWPSLLAFQRIASHPRAAAQPLTPG 63
Query 66 VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATIW 125
A I ++ +G + R+ RGNLV DAHL AL HG+ I
Sbjct 64 AAWAFITEWLRADPAWIPTPGDGHAAILGRLLTAGDLRGNLVTDAHLAALALEHGVG-IC 122
Query 126 SHDRDFRKFEGIRIRDP 142
S D DF +F+G+ +P
Sbjct 123 SFDSDFARFDGLTWHNP 139
>gi|116748338|ref|YP_845025.1| PilT domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|116697402|gb|ABK16590.1| PIN domain family protein [Syntrophobacter fumaroxidans MPOB]
Length=144
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/139 (33%), Positives = 78/139 (57%), Gaps = 1/139 (0%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
DV++L++A ++ P H +++T +E L+G V L W V +LR+ T+ + PL+ E
Sbjct 5 DVNLLLYAVNQDLPQHARSRTWLETVLSGSESVGLPWVVIRAFLRITTNARIFERPLSVE 64
Query 66 VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATIW 125
AV +E++ ++P V W + R + GNL DAH+ AL +G T++
Sbjct 65 RAVAYVEEWLAQPVATTVTPGKSHWMILRNLLLDSGTGGNLTTDAHIAALAIEYG-HTVY 123
Query 126 SHDRDFRKFEGIRIRDPFS 144
S D DF++F+G+R +P +
Sbjct 124 STDNDFKRFQGLRHINPLA 142
>gi|294054235|ref|YP_003547893.1| PIN domain-containing protein family protein [Coraliomargarita
akajimensis DSM 45221]
gi|293613568|gb|ADE53723.1| PIN domain protein family protein [Coraliomargarita akajimensis
DSM 45221]
Length=142
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/138 (36%), Positives = 72/138 (53%), Gaps = 1/138 (0%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
D ++L++A +S H AK E L+G + + W V L + R++THP + APL
Sbjct 5 DANLLIYAHDHSSRDHATAKDWWETALSGSESIGIPWIVVLAFTRILTHPQICEAPLGVT 64
Query 66 VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATIW 125
E +EQ+ P VR + +N PV+ + + GNL DA + A R H A I+
Sbjct 65 QVRELVEQWFDSPQVRLIQTSNRALPVFFDLLEDAGMGGNLSTDALIAAHAREHS-AVIY 123
Query 126 SHDRDFRKFEGIRIRDPF 143
S DRDF +F GIR +P
Sbjct 124 SCDRDFDRFMGIRWVNPL 141
>gi|258593410|emb|CBE69749.1| conserved protein of unknown function [NC10 bacterium 'Dutch
sediment']
Length=144
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/138 (29%), Positives = 67/138 (49%), Gaps = 0/138 (0%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
D ++LV+A SP+H A + + WP +L +VTHPT+
Sbjct 5 DTNLLVYAHREDSPWHTAAYARIAELAESRAPWAIPWPCLHEFLAIVTHPTIYAPATPLA 64
Query 66 VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATIW 125
+A++ ++ + P + + E +G+W R + G V DAH+ AL R HG+ +W
Sbjct 65 IALDQVDAWLESPSLTLLTEMSGYWIQLRHAIQKGQIAGPQVHDAHIAALCRLHGVRELW 124
Query 126 SHDRDFRKFEGIRIRDPF 143
+ DR F +F + +R+P
Sbjct 125 TADRHFGRFPDLPVRNPL 142
>gi|320105317|ref|YP_004180907.1| PIN domain-containing protein family protein [Terriglobus saanensis
SP1PR4]
gi|319923838|gb|ADV80913.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=145
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/140 (31%), Positives = 72/140 (52%), Gaps = 1/140 (0%)
Query 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP 64
D ++L++A A+P H ++ +ER + V + + +LR++TH L G +
Sbjct 4 LDANLLIYAYDEAAPHHKRSSKWIERIFSSREPVLIPVAAIMAFLRIMTHQALPGPRFSM 63
Query 65 EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI 124
E + ++++ S HV N W R+ + R +LV D+HL AL +G AT+
Sbjct 64 EEGIGIVDEWFSLSHVSIAITGNEHWNYLRQTLTDGQARSSLVTDSHLAALAIENG-ATL 122
Query 125 WSHDRDFRKFEGIRIRDPFS 144
S DRDF +F G+R DP +
Sbjct 123 CSVDRDFARFPGLRWVDPLT 142
>gi|240170675|ref|ZP_04749334.1| PIN domain protein family protein [Mycobacterium kansasii ATCC
12478]
Length=142
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/140 (34%), Positives = 72/140 (52%), Gaps = 1/140 (0%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
D ++L++A +S + A + +E LAG V L W +LR+ THP + PL+
Sbjct 4 DANLLLYAVDESSAHNVAAASWLEEVLAGDSRVGLPWQTIGAFLRIATHPRVAENPLSGP 63
Query 66 VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATIW 125
A + ++ + P V VY R+++ V+ GNLVPDA L AL HG+ +
Sbjct 64 AAWRYVAEWLAVPVVWIPPATETTARVYARLSEQVEITGNLVPDAQLAALAVEHGV-ELA 122
Query 126 SHDRDFRKFEGIRIRDPFSG 145
S D DF +F G+R +P S
Sbjct 123 SADTDFMRFPGLRWMNPLSA 142
>gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116227887|gb|ABJ86596.1| PIN domain family protein [Candidatus Solibacter usitatus Ellin6076]
Length=142
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/141 (30%), Positives = 70/141 (50%), Gaps = 1/141 (0%)
Query 3 ETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPL 62
+ D ++L++A ++ +P H A+ +E+ L+G + W V L +LR+ T P L PL
Sbjct 2 KLLDANILLYAVNKDAPLHQSARQWLEKTLSGDEPLGFSWNVILAFLRLTTRPGLFRKPL 61
Query 63 APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIA 122
+P+ A + + + + P V + R+ P+ GNL DAHL AL A
Sbjct 62 SPDQAFDLVASWLAEPAAIIVHAGPRHLEIVHRLIKPLGTAGNLTSDAHLGALAIEQN-A 120
Query 123 TIWSHDRDFRKFEGIRIRDPF 143
+ S D DF +F G+ +P
Sbjct 121 QLCSCDSDFARFSGVDWLNPL 141
>gi|308270136|emb|CBX26748.1| hypothetical protein N47_A07770 [uncultured Desulfobacterium
sp.]
Length=143
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/139 (30%), Positives = 69/139 (50%), Gaps = 1/139 (0%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
D ++L++A SP H +A+ + L+ V L WPV ++R+ T+P + PL E
Sbjct 5 DANILLYAEDSLSPLHQQARLWWDDQLSKSEPVCLCWPVLSAFIRIGTNPRVFEHPLPLE 64
Query 66 VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATIW 125
A+ ++ + +P R + W V+ + + NLV DAHL AL +G +
Sbjct 65 QALTRVQSWLDQPCTRVIQPTEQHWAVFMMMLKGGQAVANLVTDAHLAALAIENG-CDLA 123
Query 126 SHDRDFRKFEGIRIRDPFS 144
S D DF +F ++ +P S
Sbjct 124 STDSDFSRFPKLKWINPLS 142
>gi|88810689|ref|ZP_01125946.1| hypothetical protein NB231_16453 [Nitrococcus mobilis Nb-231]
gi|88792319|gb|EAR23429.1| hypothetical protein NB231_16453 [Nitrococcus mobilis Nb-231]
Length=144
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/140 (33%), Positives = 70/140 (50%), Gaps = 1/140 (0%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
DV++L++A + +P H AK E L+ V L W ALG++R++TH +L P+ P
Sbjct 5 DVNLLIYAYNTDAPHHSDAKAWWEGLLSSEEPVGLPWASALGFIRLMTHRAVLVMPVEPS 64
Query 66 VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATIW 125
AVE + + SR +V + + + + G L D HL AL H +
Sbjct 65 RAVEYVRSWHSRSNVSALEPGPRHLELLDGLFAALGTAGKLTTDTHLAALAIEHQ-CVLC 123
Query 126 SHDRDFRKFEGIRIRDPFSG 145
S+D DF +F G+R R+P
Sbjct 124 SNDGDFARFPGLRWRNPLKA 143
>gi|300780204|ref|ZP_07090060.1| PilT domain protein [Corynebacterium genitalium ATCC 33030]
gi|300534314|gb|EFK55373.1| PilT domain protein [Corynebacterium genitalium ATCC 33030]
Length=145
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/142 (33%), Positives = 68/142 (48%), Gaps = 5/142 (3%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
D +VL++A+ + +A + ++ L G V W L + R+ T+P L PL P
Sbjct 4 DANVLIYASDENATHFAEASSWLDGALRGTERVGFPWICLLAFQRITTNPALFAMPLTPS 63
Query 66 VAVENIEQFTSRPH--VRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIAT 123
A + IE + P+ V Q G + + R + RG LV DAHL AL HG +
Sbjct 64 RASDYIENWLKHPNSWVPQPGPQHA--SILRTLTVDSDARGTLVTDAHLAALAIEHG-TS 120
Query 124 IWSHDRDFRKFEGIRIRDPFSG 145
I S D DF +F+G+R P
Sbjct 121 ICSFDSDFARFQGLRWFSPLDA 142
>gi|145221522|ref|YP_001132200.1| PilT domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145214008|gb|ABP43412.1| PIN domain family protein [Mycobacterium gilvum PYR-GCK]
Length=145
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/139 (34%), Positives = 70/139 (51%), Gaps = 1/139 (0%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
D +VL++A + +S HD ++ ++ L+G +V L W L ++R+ T L +PL P+
Sbjct 5 DANVLLYAVNSSSEHHDASRRWLDGALSGNDVVGLAWVPMLAFVRLTTKHGLFPSPLTPD 64
Query 66 VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATIW 125
A+ I + S P V V + V GNLV DAHL AL H A I
Sbjct 65 DAMARITDWCSAPGAVIVNPTARHADVLATLLSDVGTGGNLVNDAHLAALALEHR-ARIV 123
Query 126 SHDRDFRKFEGIRIRDPFS 144
S+D DF +F G++ P S
Sbjct 124 SYDNDFGRFSGVQWDVPES 142
>gi|258593476|emb|CBE69815.1| conserved protein of unknown function [NC10 bacterium 'Dutch
sediment']
Length=144
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/149 (31%), Positives = 64/149 (43%), Gaps = 19/149 (12%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
D +VL++A SPFH + ++ + YL W + +LRV THP + P
Sbjct 5 DTNVLIYAADADSPFHRRCHARLQDWRGQTSAWYLTWGILYEFLRVTTHPRVFRQPWPAA 64
Query 66 VAVENIEQFTSRP----------HVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVAL 115
A E IE + P H V E G P GN++ DAH L
Sbjct 65 RAWEFIEAVLASPGLSLLLPTDRHATVVAEVFGELP---------HLAGNVIHDAHTAIL 115
Query 116 MRHHGIATIWSHDRDFRKFEGIRIRDPFS 144
MR HGI I++ D DF +F + DP +
Sbjct 116 MREHGIRRIYTRDTDFHRFPFLEPIDPMA 144
>gi|297623633|ref|YP_003705067.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
gi|297164813|gb|ADI14524.1| PIN domain protein family protein [Truepera radiovictrix DSM
17093]
Length=145
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/140 (32%), Positives = 67/140 (48%), Gaps = 1/140 (0%)
Query 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP 64
D ++L++A SP H A ++ L+ V L WP L +LR+ T+P + PL
Sbjct 4 IDANLLIYAHVMGSPQHHAAHAWLDAQLSAGYRVGLPWPSLLAFLRLTTNPRVFERPLTA 63
Query 65 EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI 124
A +E + S P V + R + NL+PDAHL AL HG+ T+
Sbjct 64 AEAWAQVEAWLSVPSVWLPTPTAEHPKLLRDLVTQTGATANLIPDAHLAALALEHGL-TL 122
Query 125 WSHDRDFRKFEGIRIRDPFS 144
S D DF +F ++ R+P +
Sbjct 123 CSTDGDFGRFPRLKWRNPLA 142
>gi|296130776|ref|YP_003638026.1| PIN domain protein family protein [Cellulomonas flavigena DSM
20109]
gi|296022591|gb|ADG75827.1| PIN domain protein family protein [Cellulomonas flavigena DSM
20109]
Length=143
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/133 (34%), Positives = 64/133 (49%), Gaps = 1/133 (0%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
DV+VLV A SP HD + +E + P + L V G +RV+THP + P
Sbjct 5 DVNVLVGALRADSPRHDALRRWLEAAVDAPEPLGLTDAVLGGTVRVLTHPRVFARPTPLR 64
Query 66 VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATIW 125
A++ + + P +V + W + + RGNLV DA A+ HG AT
Sbjct 65 TALDLVGDLRAHPGTVRVAPGDRHWEIVADLCRAADARGNLVADAQHAAVAVEHG-ATWV 123
Query 126 SHDRDFRKFEGIR 138
S DRDF +F G+R
Sbjct 124 SQDRDFARFPGLR 136
>gi|333991903|ref|YP_004524517.1| PIN domain-containing protein family protein [Mycobacterium sp.
JDM601]
gi|333487871|gb|AEF37263.1| PIN domain protein family protein [Mycobacterium sp. JDM601]
Length=143
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/141 (31%), Positives = 65/141 (47%), Gaps = 1/141 (0%)
Query 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP 64
D ++L++A S + A +E L G + L W +LR++THP + PL P
Sbjct 3 LDANLLLYAVDADSKHNPVAAAWLEETLNGDNRIGLPWQTIGAFLRIITHPRVTENPLPP 62
Query 65 EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI 124
A + + + P V VY + GNLVPDA L AL HG+ +
Sbjct 63 SEAWSYVADWLAVPVVWIPPATEATARVYAGICAQADVAGNLVPDAQLAALAIEHGV-EL 121
Query 125 WSHDRDFRKFEGIRIRDPFSG 145
S D DF++F G+R +P +
Sbjct 122 ASADSDFQRFPGLRWFNPLTS 142
>gi|88811999|ref|ZP_01127252.1| hypothetical protein NB231_06401 [Nitrococcus mobilis Nb-231]
gi|88790883|gb|EAR21997.1| hypothetical protein NB231_06401 [Nitrococcus mobilis Nb-231]
Length=145
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/139 (32%), Positives = 68/139 (49%), Gaps = 1/139 (0%)
Query 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP 64
DV+VLV+A + H + +E + G G + V G++RVVTHP + P
Sbjct 4 MDVNVLVYAHREDTADHLAYRDWLEEQINGLGAYGVSDLVLSGFIRVVTHPRVFERPTPL 63
Query 65 EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI 124
+ A+ + Q S+P + W ++ ++ K GNLVPDA+ AL G I
Sbjct 64 DRALAFVHQVRSQPQAVPIRPGPRHWAIFEKLVRLSKAEGNLVPDAYHAALAIEAGCDWI 123
Query 125 WSHDRDFRKFEGIRIRDPF 143
+ D+ F +F G+R R PF
Sbjct 124 -TTDKGFLRFPGLRARHPF 141
>gi|297623624|ref|YP_003705058.1| PIN domain-containing protein [Truepera radiovictrix DSM 17093]
gi|297164804|gb|ADI14515.1| PIN domain protein family protein [Truepera radiovictrix DSM
17093]
Length=144
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/141 (29%), Positives = 69/141 (49%), Gaps = 1/141 (0%)
Query 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP 64
D++ LV+A +P H +E+ + L V G++RVVTHP + P
Sbjct 4 LDINPLVYAFRPDAPQHPAYVGWLEKLVNQDAAFGLADIVCSGFIRVVTHPRVFSPPSPL 63
Query 65 EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI 124
+ A+E +E ++P+ + W ++ ++ V +GN+VPDA+L AL G + +
Sbjct 64 DDALEYLEDIRAQPNCVILAPGERHWRIFLQLCHAVGAKGNVVPDAYLAALAIESG-SEL 122
Query 125 WSHDRDFRKFEGIRIRDPFSG 145
+ DR +F G+R R P
Sbjct 123 ATADRGVARFPGLRWRHPLDA 143
>gi|340627865|ref|YP_004746317.1| hypothetical protein MCAN_28941 [Mycobacterium canettii CIPT
140010059]
gi|157382523|gb|ABV48756.1| Rv2872 [Mycobacterium canettii]
gi|340006055|emb|CCC45225.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=147
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/143 (33%), Positives = 70/143 (49%), Gaps = 3/143 (2%)
Query 4 TFDVDVLVHATHRAS-PFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPL 62
DV+VLV+A HRA H + L+ER + L V G++RVVT+ + P
Sbjct 3 CVDVNVLVYA-HRADLREHTDYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEPT 61
Query 63 APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIA 122
+P+ A + ++ + P ++ W +R++A V GN + DAHL A + A
Sbjct 62 SPQDAWQAVDALLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENN-A 120
Query 123 TIWSHDRDFRKFEGIRIRDPFSG 145
T S DR F +F +R R P G
Sbjct 121 TWLSADRGFARFRRLRWRHPLDG 143
>gi|121638754|ref|YP_978978.1| hypothetical protein BCG_2894 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224991246|ref|YP_002645935.1| hypothetical protein JTY_2889 [Mycobacterium bovis BCG str. Tokyo
172]
gi|121494402|emb|CAL72883.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224774361|dbj|BAH27167.1| hypothetical protein JTY_2889 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341602792|emb|CCC65470.1| conserved hypothetical protein [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=147
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/143 (33%), Positives = 70/143 (49%), Gaps = 3/143 (2%)
Query 4 TFDVDVLVHATHRAS-PFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPL 62
DV+VLV+A HRA H + L+ER + L V G++RVVT+ + P
Sbjct 3 CVDVNVLVYA-HRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEPT 61
Query 63 APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIA 122
+P+ A + ++ + P ++ W +R++A V GN + DAHL A + A
Sbjct 62 SPQDAWQAVDTLLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENN-A 120
Query 123 TIWSHDRDFRKFEGIRIRDPFSG 145
T S DR F +F +R R P G
Sbjct 121 TWLSADRGFARFRRLRWRHPLDG 143
>gi|15610009|ref|NP_217388.1| hypothetical protein Rv2872 [Mycobacterium tuberculosis H37Rv]
gi|15842413|ref|NP_337450.1| hypothetical protein MT2939 [Mycobacterium tuberculosis CDC1551]
gi|31794049|ref|NP_856542.1| hypothetical protein Mb2897 [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=147
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/143 (33%), Positives = 70/143 (49%), Gaps = 3/143 (2%)
Query 4 TFDVDVLVHATHRAS-PFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPL 62
DV+VLV+A HRA H + L+ER + L V G++RVVT+ + P
Sbjct 3 CVDVNVLVYA-HRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEPT 61
Query 63 APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIA 122
+P+ A + ++ + P ++ W +R++A V GN + DAHL A + A
Sbjct 62 SPQDAWQAVDALLAAPAAMRLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENN-A 120
Query 123 TIWSHDRDFRKFEGIRIRDPFSG 145
T S DR F +F +R R P G
Sbjct 121 TWLSADRGFARFRRLRWRHPLDG 143
>gi|284122509|ref|ZP_06386855.1| PIN domain family protein [Candidatus Poribacteria sp. WGA-A3]
gi|283829353|gb|EFC33749.1| PIN domain family protein [Candidatus Poribacteria sp. WGA-A3]
Length=143
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/137 (31%), Positives = 67/137 (49%), Gaps = 2/137 (1%)
Query 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALG-YLRVVTHPTLLGAPLA 63
D +VL+HA + H +A L+ R LA + L LG +LRVVTH + P
Sbjct 4 LDTNVLIHAHRKEMAKHAEAGQLL-RNLAEGTKPWGLPVFCLGEFLRVVTHHRVFTPPTT 62
Query 64 PEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIAT 123
+ A+ ++ P VR + + +W + + GN+V DA +VA+ HGI
Sbjct 63 IQNALAALDGLLQSPTVRLLLPGDRYWSCFHNAISQGQATGNVVFDAQIVAVCLEHGIDF 122
Query 124 IWSHDRDFRKFEGIRIR 140
+ S DR+ ++FE I+
Sbjct 123 LISEDRELKRFENNNIQ 139
>gi|289758220|ref|ZP_06517598.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|294997046|ref|ZP_06802737.1| hypothetical protein Mtub2_21708 [Mycobacterium tuberculosis
210]
gi|289713784|gb|EFD77796.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|326903715|gb|EGE50648.1| toxin [Mycobacterium tuberculosis W-148]
gi|339295024|gb|AEJ47135.1| hypothetical protein CCDC5079_1945 [Mycobacterium tuberculosis
CCDC5079]
gi|339298648|gb|AEJ50758.1| hypothetical protein CCDC5180_1921 [Mycobacterium tuberculosis
CCDC5180]
Length=144
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/140 (32%), Positives = 66/140 (48%), Gaps = 1/140 (0%)
Query 3 ETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPL 62
+ D +VL++A + AS H + ++ L+G V W L ++R+ T L PL
Sbjct 2 KIVDANVLLYAVNTASEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPL 61
Query 63 APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIA 122
E A+ + + + P V + R+ V NLV DAHL AL H A
Sbjct 62 PREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHR-A 120
Query 123 TIWSHDRDFRKFEGIRIRDP 142
+I S+D DF +FEG+R P
Sbjct 121 SIVSYDSDFGRFEGVRWDQP 140
>gi|333990439|ref|YP_004523053.1| hypothetical protein JDM601_1799 [Mycobacterium sp. JDM601]
gi|333486407|gb|AEF35799.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=143
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/141 (34%), Positives = 70/141 (50%), Gaps = 4/141 (2%)
Query 3 ETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPL 62
+ D +VL++A + A+ HD + ++R L+G V W L ++R+ T L PL
Sbjct 2 KIVDANVLLYAVNTAAEHHDASLRWLDRALSGADTVGFAWVPLLAFVRLSTKEGLFPHPL 61
Query 63 APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVAL-MRHHGI 121
PE AV+ + ++T+ V + + V GNLV DAHL AL + H G
Sbjct 62 RPEDAVDRVAEWTAASSAVVVNPTPRHADILTGLLARVGAGGNLVNDAHLAALAIEHRG- 120
Query 122 ATIWSHDRDFRKFEGIRIRDP 142
I S+D DF +F GIR P
Sbjct 121 -GIVSYDADFGRF-GIRWDRP 139
>gi|15609240|ref|NP_216619.1| hypothetical protein Rv2103c [Mycobacterium tuberculosis H37Rv]
gi|31793285|ref|NP_855778.1| hypothetical protein Mb2129c [Mycobacterium bovis AF2122/97]
gi|121637987|ref|YP_978211.1| hypothetical protein BCG_2122c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
67 more sequence titles
Length=144
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/140 (31%), Positives = 65/140 (47%), Gaps = 1/140 (0%)
Query 3 ETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPL 62
+ D +VL++A + S H + ++ L+G V W L ++R+ T L PL
Sbjct 2 KIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPL 61
Query 63 APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIA 122
E A+ + + + P V + R+ V NLV DAHL AL H A
Sbjct 62 PREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHR-A 120
Query 123 TIWSHDRDFRKFEGIRIRDP 142
+I S+D DF +FEG+R P
Sbjct 121 SIVSYDSDFGRFEGVRWDQP 140
>gi|307084750|ref|ZP_07493863.1| toxin [Mycobacterium tuberculosis SUMu012]
gi|308365680|gb|EFP54531.1| toxin [Mycobacterium tuberculosis SUMu012]
Length=143
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/140 (31%), Positives = 65/140 (47%), Gaps = 1/140 (0%)
Query 3 ETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPL 62
+ D +VL++A + S H + ++ L+G V W L ++R+ T L PL
Sbjct 2 KIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPL 61
Query 63 APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIA 122
E A+ + + + P V + R+ V NLV DAHL AL H A
Sbjct 62 PREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHR-A 120
Query 123 TIWSHDRDFRKFEGIRIRDP 142
+I S+D DF +FEG+R P
Sbjct 121 SIVSYDSDFGRFEGVRWDQP 140
>gi|15841594|ref|NP_336631.1| hypothetical protein MT2163 [Mycobacterium tuberculosis CDC1551]
gi|13881843|gb|AAK46445.1| hypothetical protein MT2163 [Mycobacterium tuberculosis CDC1551]
Length=145
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/140 (31%), Positives = 65/140 (47%), Gaps = 1/140 (0%)
Query 3 ETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPL 62
+ D +VL++A + S H + ++ L+G V W L ++R+ T L PL
Sbjct 3 KIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPL 62
Query 63 APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIA 122
E A+ + + + P V + R+ V NLV DAHL AL H A
Sbjct 63 PREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHR-A 121
Query 123 TIWSHDRDFRKFEGIRIRDP 142
+I S+D DF +FEG+R P
Sbjct 122 SIVSYDSDFGRFEGVRWDQP 141
>gi|297567544|ref|YP_003686516.1| PIN domain-containing protein family protein [Meiothermus silvanus
DSM 9946]
gi|296851993|gb|ADH65008.1| PIN domain protein family protein [Meiothermus silvanus DSM 9946]
Length=143
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/141 (35%), Positives = 68/141 (49%), Gaps = 5/141 (3%)
Query 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTL--LGAPL 62
DV+VL++A R SP H + LA V + V L LR+ T P+L L APL
Sbjct 4 LDVNVLIYAFRRDSPQHPACYAWLSGSLATGESVGVPSWVELAVLRINTLPSLGDLAAPL 63
Query 63 APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIA 122
+A + + S P + V P++ + + RGN + DA + AL HG A
Sbjct 64 KDVLAF--LYELRSHPSYQLVEPGPKHLPIFEDLCQRLGLRGNDLNDAFIAALAIEHG-A 120
Query 123 TIWSHDRDFRKFEGIRIRDPF 143
T+ S DR F +F G+R DP
Sbjct 121 TLVSTDRGFARFPGVRRIDPL 141
>gi|340627115|ref|YP_004745567.1| hypothetical protein MCAN_21291 [Mycobacterium canettii CIPT
140010059]
gi|340005305|emb|CCC44461.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=144
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 64/140 (46%), Gaps = 1/140 (0%)
Query 3 ETFDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPL 62
+ D +VL++A + S H + ++ L+G V W L ++R+ T L PL
Sbjct 2 KIVDANVLLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLSFVRLATKVGLFPRPL 61
Query 63 APEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIA 122
E A+ + + + P V + R+ V NLV DAHL AL H A
Sbjct 62 PREAAITQVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHR-A 120
Query 123 TIWSHDRDFRKFEGIRIRDP 142
+I S+D DF +F G+R P
Sbjct 121 SIVSYDSDFGRFAGVRWDQP 140
>gi|322435687|ref|YP_004217899.1| PIN domain protein family protein [Acidobacterium sp. MP5ACTX9]
gi|321163414|gb|ADW69119.1| PIN domain protein family protein [Acidobacterium sp. MP5ACTX9]
Length=143
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/141 (28%), Positives = 73/141 (52%), Gaps = 2/141 (1%)
Query 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPG-LVYLLWPVALGYLRVVTHPTLLGAPLA 63
D ++L++A S FH A++ ++ + + + A +LR++T+P + GA +A
Sbjct 4 LDANLLLYAYTARSSFHQPARSYLDHIFSDTSESIGIPIQCATAFLRLITNPAVTGARIA 63
Query 64 PEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIAT 123
+ A+ +E++ + PHVR + W + V G+L+ DA + A +G A
Sbjct 64 MDDAIARVEEWQALPHVRILYPGEEHWQFLKTVTRNGHATGDLIADAAIAAFALEYG-AV 122
Query 124 IWSHDRDFRKFEGIRIRDPFS 144
+ S+DRDF +F IR +P +
Sbjct 123 VHSNDRDFARFSSIRWHNPLA 143
>gi|289750699|ref|ZP_06510077.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289691286|gb|EFD58715.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=136
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/133 (31%), Positives = 61/133 (46%), Gaps = 1/133 (0%)
Query 10 LVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPEVAVE 69
+++A + S H + ++ L+G V W L ++R+ T L PL E A+
Sbjct 1 MLYAVNTTSEHHKPSLRWLDGALSGADRVGFAWVPLLAFVRLATKVGLFPRPLPREAAIT 60
Query 70 NIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATIWSHDR 129
+ + + P V + R+ V NLV DAHL AL H A+I S+D
Sbjct 61 QVADWLAAPSAVLVNPTVRHADILARMLTYVGTGANLVNDAHLAALAVEHR-ASIVSYDS 119
Query 130 DFRKFEGIRIRDP 142
DF +FEG+R P
Sbjct 120 DFGRFEGVRWDQP 132
>gi|160898241|ref|YP_001563823.1| PilT domain-containing protein [Delftia acidovorans SPH-1]
gi|160363825|gb|ABX35438.1| PIN domain protein family protein [Delftia acidovorans SPH-1]
Length=145
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/134 (33%), Positives = 63/134 (48%), Gaps = 5/134 (3%)
Query 4 TFDVDVLVHATHRASPFHDKAKTLVERFLA--GPGLVYLLWP-VALGYLRVVTHPTLLGA 60
T DV++LV A+ P H A+ +E+ +A G++ L P V +LR+VTHP +
Sbjct 2 TPDVNLLVAASRSDHPHHSVARDWLEQAMADASQGVLLKLQPMVVASFLRLVTHPKIFVN 61
Query 61 PLAPEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHG 120
P A+ I+ + P V Q WP R++ N VPDA L A H G
Sbjct 62 PTPMAEALRFIDALLASPGVEQ-AVLGAEWPALRQLCADKALAANDVPDAWLAAAAIHQG 120
Query 121 IATIWSHDRDFRKF 134
+ S D DF++
Sbjct 121 EHVV-SFDADFKRL 133
>gi|15608382|ref|NP_215758.1| hypothetical protein Rv1242 [Mycobacterium tuberculosis H37Rv]
gi|15840687|ref|NP_335724.1| hypothetical protein MT1280 [Mycobacterium tuberculosis CDC1551]
gi|31792435|ref|NP_854928.1| hypothetical protein Mb1274 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=143
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/141 (27%), Positives = 65/141 (47%), Gaps = 7/141 (4%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
D+++L++A P H +A + + G + L +P G+LR+ T +L APL
Sbjct 5 DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTA 64
Query 66 VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGI---A 122
A+ + ++ S+P+V + + + D + +L D L A +GI A
Sbjct 65 DAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHLTTDVQLAA----YGIEYDA 120
Query 123 TIWSHDRDFRKFEGIRIRDPF 143
I S D DF +F ++ DP
Sbjct 121 EIHSSDTDFARFADLKWTDPL 141
>gi|240168912|ref|ZP_04747571.1| hypothetical protein MkanA1_06345 [Mycobacterium kansasii ATCC
12478]
Length=143
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/138 (26%), Positives = 63/138 (46%), Gaps = 1/138 (0%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
DV++L++A P H +A + + L +P G+LR+VT+ +L PL+
Sbjct 5 DVNLLLYAVITGFPQHRRAYAWWHDTVNSQERIGLTYPAVFGFLRIVTNARILTEPLSAT 64
Query 66 VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATIW 125
AV + + ++P+V + + + + + + NL D L A H A +
Sbjct 65 EAVAYVRDWLTQPNVDLLIPSARHLDLALGLLEQLGTASNLTTDVQLAAYAIEHN-AEMH 123
Query 126 SHDRDFRKFEGIRIRDPF 143
S D DF +F G+ +P
Sbjct 124 SSDADFARFAGLAWTNPL 141
>gi|340625767|ref|YP_004744219.1| hypothetical protein MCAN_07521 [Mycobacterium canettii CIPT
140010059]
gi|340003957|emb|CCC43092.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=142
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/140 (29%), Positives = 61/140 (44%), Gaps = 2/140 (1%)
Query 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP 64
D +VL+ A P H + +R LA + V +LR+ T+ + P
Sbjct 4 LDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPSPR 63
Query 65 EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI 124
A I+ T++PH + R++ D G+L+PDA L A+ H A +
Sbjct 64 AAAFAFIDAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVEHHCAVV 123
Query 125 WSHDRDFRKFEGIR-IRDPF 143
S DRDF +F +R IR P
Sbjct 124 -SLDRDFARFTSVRHIRPPL 142
>gi|253797202|ref|YP_003030203.1| toxin [Mycobacterium tuberculosis KZN 1435]
gi|289552530|ref|ZP_06441740.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|297632757|ref|ZP_06950537.1| toxin [Mycobacterium tuberculosis KZN 4207]
gi|297729731|ref|ZP_06958849.1| toxin [Mycobacterium tuberculosis KZN R506]
gi|313657057|ref|ZP_07813937.1| toxin [Mycobacterium tuberculosis KZN V2475]
gi|253318705|gb|ACT23308.1| toxin [Mycobacterium tuberculosis KZN 1435]
gi|289437162|gb|EFD19655.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|328456989|gb|AEB02412.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length=142
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/140 (30%), Positives = 62/140 (45%), Gaps = 2/140 (1%)
Query 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP 64
DV+VL+ A P H + +R LA + V +LR+ T+ + P
Sbjct 4 IDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPSPR 63
Query 65 EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI 124
A +E T++PH + R++ D G+L+PDA L A+ H A +
Sbjct 64 ADAFAFVEAVTAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAVV 123
Query 125 WSHDRDFRKFEGIR-IRDPF 143
S DRDF +F +R IR P
Sbjct 124 -SLDRDFARFASVRHIRPPI 142
>gi|306774366|ref|ZP_07412703.1| toxin [Mycobacterium tuberculosis SUMu001]
gi|306974699|ref|ZP_07487360.1| toxin [Mycobacterium tuberculosis SUMu010]
gi|307082408|ref|ZP_07491578.1| toxin [Mycobacterium tuberculosis SUMu011]
gi|308217200|gb|EFO76599.1| toxin [Mycobacterium tuberculosis SUMu001]
gi|308356102|gb|EFP44953.1| toxin [Mycobacterium tuberculosis SUMu010]
gi|308360056|gb|EFP48907.1| toxin [Mycobacterium tuberculosis SUMu011]
Length=142
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/140 (29%), Positives = 61/140 (44%), Gaps = 2/140 (1%)
Query 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP 64
DV+VL+ A P H + +R LA + V +LR+ T+ + P
Sbjct 4 IDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPSPR 63
Query 65 EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI 124
A +E ++PH + R++ D G+L+PDA L A+ H A +
Sbjct 64 ADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLAAIAVEHHCAVV 123
Query 125 WSHDRDFRKFEGIR-IRDPF 143
S DRDF +F +R IR P
Sbjct 124 -SLDRDFARFASVRHIRPPI 142
>gi|15607889|ref|NP_215263.1| hypothetical protein Rv0749 [Mycobacterium tuberculosis H37Rv]
gi|15840162|ref|NP_335199.1| hypothetical protein MT0773 [Mycobacterium tuberculosis CDC1551]
gi|31791935|ref|NP_854428.1| hypothetical protein Mb0770 [Mycobacterium bovis AF2122/97]
64 more sequence titles
Length=142
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/140 (29%), Positives = 61/140 (44%), Gaps = 2/140 (1%)
Query 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP 64
D +VL+ A P H + +R LA + V +LR+ T+ + P
Sbjct 4 LDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPSPR 63
Query 65 EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI 124
A +E T++PH + R++ D G+L+PDA L A+ H A +
Sbjct 64 AEAFAFVEAVTAQPHHLPTNPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAVV 123
Query 125 WSHDRDFRKFEGIR-IRDPF 143
S DRDF +F +R IR P
Sbjct 124 -SLDRDFARFASVRHIRPPL 142
>gi|121636671|ref|YP_976894.1| hypothetical protein BCG_0799 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224989143|ref|YP_002643830.1| hypothetical protein JTY_0769 [Mycobacterium bovis BCG str. Tokyo
172]
gi|289442150|ref|ZP_06431894.1| toxin [Mycobacterium tuberculosis T46]
10 more sequence titles
Length=142
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/140 (29%), Positives = 61/140 (44%), Gaps = 2/140 (1%)
Query 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP 64
D +VL+ A P H + +R LA + V +LR+ T+ + P
Sbjct 4 LDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPSPR 63
Query 65 EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI 124
A +E T++PH + R++ D G+L+PDA L A+ H A +
Sbjct 64 AEAFAFVEAVTAQPHHLPTNPGPRHLVLLRKLCDEADASGDLIPDAVLAAIAVGHHCAVV 123
Query 125 WSHDRDFRKFEGIR-IRDPF 143
S DRDF +F +R IR P
Sbjct 124 -SLDRDFARFASVRHIRPPL 142
>gi|289573902|ref|ZP_06454129.1| toxin [Mycobacterium tuberculosis K85]
gi|289538333|gb|EFD42911.1| toxin [Mycobacterium tuberculosis K85]
Length=143
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/141 (26%), Positives = 64/141 (46%), Gaps = 7/141 (4%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
D+++L++A P H +A + + G + L +P G+LR+ T +L APL
Sbjct 5 DINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTA 64
Query 66 VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGI---A 122
A+ + ++ S+P+V + + + D + + D L A +GI A
Sbjct 65 DAIAYVREWLSQPNVDLLTAGPRHLDIALGLLDKLGTASHRTTDVQLAA----YGIEYDA 120
Query 123 TIWSHDRDFRKFEGIRIRDPF 143
I S D DF +F ++ DP
Sbjct 121 EIHSSDTDFARFADLKWTDPL 141
>gi|340625313|ref|YP_004743765.1| hypothetical protein MCAN_02841 [Mycobacterium canettii CIPT
140010059]
gi|340003503|emb|CCC42624.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=142
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/139 (29%), Positives = 61/139 (44%), Gaps = 2/139 (1%)
Query 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP 64
D +VL+ A P H + +R LA + V +LR+ T+ + P
Sbjct 4 LDANVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPSPR 63
Query 65 EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI 124
A ++ T++PH + R++ D G+L+PDA L A+ H A +
Sbjct 64 ADAFAFVDAVTAQPHHLPTSPGPRHLMLLRKLCDEADASGDLIPDAVLAAIAVEHHCAVV 123
Query 125 WSHDRDFRKFEGIR-IRDP 142
S DRDF +F +R IR P
Sbjct 124 -SLDRDFARFASVRHIRPP 141
>gi|15607418|ref|NP_214791.1| hypothetical protein Rv0277c [Mycobacterium tuberculosis H37Rv]
gi|15839658|ref|NP_334695.1| hypothetical protein MT0289 [Mycobacterium tuberculosis CDC1551]
gi|31791455|ref|NP_853948.1| hypothetical protein Mb0283c [Mycobacterium bovis AF2122/97]
64 more sequence titles
Length=142
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/140 (29%), Positives = 61/140 (44%), Gaps = 2/140 (1%)
Query 5 FDVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAP 64
DV+VL+ A P H + +R LA + V +LR+ T+ + P
Sbjct 4 IDVNVLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLTTNRRIFEIPSPR 63
Query 65 EVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATI 124
A +E ++PH + R++ D G+L+PDA L A+ H A +
Sbjct 64 ADAFAFVEAVNAQPHHLPTSPGPRHLVLLRKLCDEADASGDLIPDAVLGAIAVEHHCAVV 123
Query 125 WSHDRDFRKFEGIR-IRDPF 143
S DRDF +F +R IR P
Sbjct 124 -SLDRDFARFASVRHIRPPI 142
>gi|33865109|ref|NP_896668.1| hypothetical protein SYNW0573 [Synechococcus sp. WH 8102]
gi|33638793|emb|CAE07088.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length=144
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/133 (33%), Positives = 60/133 (46%), Gaps = 15/133 (11%)
Query 17 ASPFHDKAKTLVERF-LAGPGLVYLLWPVALGYLRVVTHPTLLG-APLAPEVAVENIEQF 74
ASP H + V+ + V ALG +R+V P ++G A L P A +E F
Sbjct 17 ASPNHKHHSSAVQYWEKQASQQVLFCTTTALGLVRLVMQPKVMGGAALMPADASALLETF 76
Query 75 TSRPHVRQVGEANGFWPVY---RRVADPVKPRGNLVPDAHLVALMRHHGIATIW---SHD 128
+P V + W V+ R AD + PR L DAHL AL I W S D
Sbjct 77 LQQPGVSHAQPTSDGWDVFHLLMRQAD-LTPR--LCTDAHLAAL----AITNQWRLVSFD 129
Query 129 RDFRKFEGIRIRD 141
+DF+ F G+ + +
Sbjct 130 QDFQLFSGLNLLE 142
>gi|308273612|emb|CBX30214.1| unknown protein [uncultured Desulfobacterium sp.]
Length=150
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (50%), Gaps = 7/144 (4%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFL-----AGPGLVYLLWPVALGYLRVVTHPTLLGA 60
D +++V+A + ASPFH +AK VER + G V L V + ++ V+T L A
Sbjct 5 DTNLIVYAHNIASPFHKRAKQFVERVMNERNAEGQLAVCLPAQVLMEFVHVITWQH-LEA 63
Query 61 PLAPEVAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHG 120
PL+ + A++ ++ + V+ + + + + ++ V R + A L +H
Sbjct 64 PLSLQEAIQIVQDYLDSG-VKIIFQQDSRIQTFISLSGSVTTRKKVFDLALASTLKDNHT 122
Query 121 IATIWSHDRDFRKFEGIRIRDPFS 144
I ++ DF+ F+ +++ +P S
Sbjct 123 IGLYTNNVDDFKGFDFLKVINPLS 146
>gi|147679127|ref|YP_001213342.1| nucleic acid-binding protein [Pelotomaculum thermopropionicum
SI]
gi|146275224|dbj|BAF60973.1| predicted nucleic acid-binding protein [Pelotomaculum thermopropionicum
SI]
Length=145
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/138 (27%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query 6 DVDVLVHATHRASPFHDKAKTLVERFLAGPGLVYLLWPVALGYLRVVTHPTLLGAPLAPE 65
D +VLV+A + +P H ++ VE L V L + +VT + PL PE
Sbjct 5 DTNVLVYAINTDAPQHTASRKFVEAVQQKNIDSVLPVQVLLEFYAIVTDHRRVTRPLEPE 64
Query 66 VAVENIEQFTSRPHVRQVGEANGFWPVYRRVADPVKPRGNLVPDAHLVALMRHHGIATIW 125
A + + + V G + + + + ++ +K +G + DA+LVA M+ G++ +
Sbjct 65 TAWKQVNALRAIFPVIDGGLKS--FDLLKEIS--LKTKGADIFDAYLVAQMKACGVSLLC 120
Query 126 SHD-RDFRKFEGIRIRDP 142
+++ +DF +FEGI + P
Sbjct 121 TYNIKDFSRFEGILAQTP 138
Lambda K H
0.325 0.141 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128154014136
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40