BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3705A Length=129 Score E Sequences producing significant alignments: (Bits) Value gi|15843325|ref|NP_338362.1| hypothetical protein MT3808.1 [Myco... 240 6e-62 gi|308371427|ref|ZP_07667161.1| conserved proline rich protein [... 238 3e-61 gi|289572356|ref|ZP_06452583.1| predicted protein [Mycobacterium... 237 4e-61 gi|340628679|ref|YP_004747131.1| hypothetical protein MCAN_37271... 236 6e-61 gi|308380776|ref|ZP_07669282.1| conserved proline rich protein [... 157 7e-37 gi|308406223|ref|ZP_07669546.1| conserved proline rich protein [... 155 2e-36 gi|308369203|ref|ZP_07666685.1| conserved proline rich protein [... 153 1e-35 gi|120404607|ref|YP_954436.1| hypothetical protein Mvan_3639 [My... 58.9 2e-07 gi|120401524|ref|YP_951353.1| hypothetical protein Mvan_0502 [My... 58.5 3e-07 gi|296166797|ref|ZP_06849216.1| hypothetical protein HMPREF0591_... 55.5 3e-06 gi|183985188|ref|YP_001853479.1| hypothetical protein MMAR_5219 ... 54.3 5e-06 gi|118619449|ref|YP_907781.1| hypothetical protein MUL_4293 [Myc... 53.5 1e-05 gi|254821104|ref|ZP_05226105.1| hypothetical protein MintA_14302... 52.8 2e-05 gi|183985187|ref|YP_001853478.1| hypothetical protein MMAR_5218 ... 50.8 6e-05 gi|183981450|ref|YP_001849741.1| hypothetical protein MMAR_1428 ... 50.8 6e-05 gi|145221899|ref|YP_001132577.1| hypothetical protein Mflv_1307 ... 50.4 9e-05 gi|254773401|ref|ZP_05214917.1| hypothetical protein MaviaA2_018... 49.7 2e-04 gi|240172818|ref|ZP_04751477.1| hypothetical protein MkanA1_2613... 48.5 3e-04 gi|41406406|ref|NP_959242.1| hypothetical protein MAP0308c [Myco... 47.8 6e-04 gi|336460883|gb|EGO39768.1| hypothetical protein MAPs_37060 [Myc... 47.0 0.001 gi|118619448|ref|YP_907780.1| hypothetical protein MUL_4292 [Myc... 46.2 0.001 gi|118472795|ref|YP_890473.1| hypothetical protein MSMEG_6254 [M... 45.8 0.002 gi|120405589|ref|YP_955418.1| hypothetical protein Mvan_4637 [My... 44.3 0.006 gi|120406440|ref|YP_956269.1| hypothetical protein Mvan_5494 [My... 43.1 0.012 gi|336460882|gb|EGO39767.1| hypothetical protein MAPs_37050 [Myc... 43.1 0.013 gi|126436474|ref|YP_001072165.1| hypothetical protein Mjls_3898 ... 42.7 0.016 gi|118466855|ref|YP_879682.1| hypothetical protein MAV_0397 [Myc... 42.4 0.024 gi|342861929|ref|ZP_08718573.1| hypothetical protein MCOL_23680 ... 40.8 0.075 gi|254773400|ref|ZP_05214916.1| hypothetical protein MaviaA2_017... 40.4 0.086 gi|118463566|ref|YP_879681.1| hypothetical protein MAV_0396 [Myc... 40.4 0.096 gi|342861928|ref|ZP_08718572.1| hypothetical protein MCOL_23675 ... 39.7 0.16 gi|254818518|ref|ZP_05223519.1| hypothetical protein MintA_01269... 39.3 0.18 gi|340628680|ref|YP_004747132.1| hypothetical protein MCAN_37281... 36.2 1.9 gi|240172817|ref|ZP_04751476.1| hypothetical protein MkanA1_2612... 35.4 2.7 >gi|15843325|ref|NP_338362.1| hypothetical protein MT3808.1 [Mycobacterium tuberculosis CDC1551] gi|31794877|ref|NP_857370.1| proline rich protein [Mycobacterium bovis AF2122/97] gi|57117146|ref|YP_178006.1| proline rich protein [Mycobacterium tuberculosis H37Rv] 47 more sequence titles Length=129 Score = 240 bits (612), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 129/129 (100%), Positives = 129/129 (100%), Gaps = 0/129 (0%) Query 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG 60 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG Sbjct 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG 60 Query 61 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPPPGMGPGFPGGPGGPAVGPTGP 120 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPPPGMGPGFPGGPGGPAVGPTGP Sbjct 61 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPPPGMGPGFPGGPGGPAVGPTGP 120 Query 121 GPTTAPARP 129 GPTTAPARP Sbjct 121 GPTTAPARP 129 >gi|308371427|ref|ZP_07667161.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu003] gi|308372625|ref|ZP_07667424.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu004] gi|308372713|ref|ZP_07667441.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu005] 11 more sequence titles Length=129 Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 128/129 (99%), Positives = 128/129 (99%), Gaps = 0/129 (0%) Query 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG 60 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG Sbjct 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG 60 Query 61 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPPPGMGPGFPGGPGGPAVGPTGP 120 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPPPGMGPGFPGGPGG AVGPTGP Sbjct 61 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPPPGMGPGFPGGPGGTAVGPTGP 120 Query 121 GPTTAPARP 129 GPTTAPARP Sbjct 121 GPTTAPARP 129 >gi|289572356|ref|ZP_06452583.1| predicted protein [Mycobacterium tuberculosis K85] gi|289536787|gb|EFD41365.1| predicted protein [Mycobacterium tuberculosis K85] Length=129 Score = 237 bits (605), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 128/129 (99%), Positives = 128/129 (99%), Gaps = 0/129 (0%) Query 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG 60 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLY AAAWVVIVAGIVFTVAVIFFSGALVLG Sbjct 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYLAAAWVVIVAGIVFTVAVIFFSGALVLG 60 Query 61 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPPPGMGPGFPGGPGGPAVGPTGP 120 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPPPGMGPGFPGGPGGPAVGPTGP Sbjct 61 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPPPGMGPGFPGGPGGPAVGPTGP 120 Query 121 GPTTAPARP 129 GPTTAPARP Sbjct 121 GPTTAPARP 129 >gi|340628679|ref|YP_004747131.1| hypothetical protein MCAN_37271 [Mycobacterium canettii CIPT 140010059] gi|340006869|emb|CCC46058.1| conserved hypothetical proline rich protein [Mycobacterium canettii CIPT 140010059] Length=129 Score = 236 bits (603), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 127/129 (99%), Positives = 127/129 (99%), Gaps = 0/129 (0%) Query 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG 60 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG Sbjct 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG 60 Query 61 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPPPGMGPGFPGGPGGPAVGPTGP 120 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPPPGMGPGFPGGPGGPA GP GP Sbjct 61 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPPPGMGPGFPGGPGGPAAGPAGP 120 Query 121 GPTTAPARP 129 GPTTAPARP Sbjct 121 GPTTAPARP 129 >gi|308380776|ref|ZP_07669282.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu011] gi|308360399|gb|EFP49250.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu011] Length=154 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 100/104 (97%), Positives = 100/104 (97%), Gaps = 0/104 (0%) Query 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG 60 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG Sbjct 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG 60 Query 61 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPPPGMGP 104 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPP P Sbjct 61 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPPQAWAP 104 >gi|308406223|ref|ZP_07669546.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu012] gi|308364095|gb|EFP52946.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu012] Length=154 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 99/104 (96%), Positives = 99/104 (96%), Gaps = 0/104 (0%) Query 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG 60 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG Sbjct 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG 60 Query 61 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPPPGMGP 104 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGP P P Sbjct 61 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPLPQAWAP 104 >gi|308369203|ref|ZP_07666685.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu002] gi|308328324|gb|EFP17175.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu002] Length=138 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 102/111 (92%), Positives = 102/111 (92%), Gaps = 1/111 (0%) Query 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG 60 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG Sbjct 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG 60 Query 61 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPPPPGMGPGFPGGPG 111 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGP P FP PG Sbjct 61 QGKCPYHRYYHHGMFRPVGPVAPGPGMGWVFGFPGGPLPQAWAR-FPWRPG 110 >gi|120404607|ref|YP_954436.1| hypothetical protein Mvan_3639 [Mycobacterium vanbaalenii PYR-1] gi|119957425|gb|ABM14430.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=153 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/61 (53%), Positives = 39/61 (64%), Gaps = 2/61 (3%) Query 1 MTETPQPAAPPPSAATTSPPPSP-QQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVL 59 MTETP+ P +A T S Q+++P RL R AA V IVAG+VF +A IFFSG VL Sbjct 1 MTETPETRTEPTAATTDRRESSAVQRDRPNRLNRIAALVGIVAGVVFIIAAIFFSG-FVL 59 Query 60 G 60 G Sbjct 60 G 60 >gi|120401524|ref|YP_951353.1| hypothetical protein Mvan_0502 [Mycobacterium vanbaalenii PYR-1] gi|120406355|ref|YP_956184.1| hypothetical protein Mvan_5408 [Mycobacterium vanbaalenii PYR-1] gi|145225983|ref|YP_001136637.1| hypothetical protein Mflv_5388 [Mycobacterium gilvum PYR-GCK] gi|119954342|gb|ABM11347.1| hypothetical protein Mvan_0502 [Mycobacterium vanbaalenii PYR-1] gi|119959173|gb|ABM16178.1| hypothetical protein Mvan_5408 [Mycobacterium vanbaalenii PYR-1] gi|145218446|gb|ABP47849.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=158 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/60 (54%), Positives = 39/60 (65%), Gaps = 2/60 (3%) Query 1 MTETPQPAAPPPSAATTSP--PPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALV 58 MTETP+ P + AT SP ++P RL ++AAWV IVAG+VF VAVIFFSG V Sbjct 1 MTETPESRTEPTAVATEQGRGELSPGSDRPNRLTQSAAWVGIVAGVVFIVAVIFFSGFFV 60 >gi|296166797|ref|ZP_06849216.1| hypothetical protein HMPREF0591_2657 [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897846|gb|EFG77433.1| hypothetical protein HMPREF0591_2657 [Mycobacterium parascrofulaceum ATCC BAA-614] Length=116 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/35 (72%), Positives = 31/35 (89%), Gaps = 0/35 (0%) Query 24 QQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALV 58 ++ KPPRLY+AAAWVVIVAGIVF +A +FF+GA V Sbjct 28 ERVKPPRLYKAAAWVVIVAGIVFIIATVFFAGAFV 62 >gi|183985188|ref|YP_001853479.1| hypothetical protein MMAR_5219 [Mycobacterium marinum M] gi|183178514|gb|ACC43624.1| conserved hypothetical proline rich protein [Mycobacterium marinum M] Length=115 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/55 (55%), Positives = 40/55 (73%), Gaps = 2/55 (3%) Query 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSG 55 M+ET + +A P S T PP P Q + P++++AAAWV IVAGIVF V+VIFF+G Sbjct 1 MSETSETSAAPTS--TVVAPPPPPQHQTPKVFKAAAWVAIVAGIVFIVSVIFFTG 53 >gi|118619449|ref|YP_907781.1| hypothetical protein MUL_4293 [Mycobacterium ulcerans Agy99] gi|118571559|gb|ABL06310.1| conserved hypothetical proline rich protein [Mycobacterium ulcerans Agy99] Length=115 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/55 (55%), Positives = 39/55 (71%), Gaps = 2/55 (3%) Query 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSG 55 M+ET + +A P S T PP P Q P++++AAAWV IVAGIVF V+VIFF+G Sbjct 1 MSETSETSAAPTS--TVVAPPPPPQHLTPKVFKAAAWVAIVAGIVFIVSVIFFTG 53 >gi|254821104|ref|ZP_05226105.1| hypothetical protein MintA_14302 [Mycobacterium intracellulare ATCC 13950] Length=129 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/60 (60%), Positives = 44/60 (74%), Gaps = 2/60 (3%) Query 1 MTETPQPAAPPPSAATTSPPPSPQ--QEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALV 58 M+ETP+P A P AA T+PP P + KPPRLY AAAWVVIVAGIVF ++ +FF GA + Sbjct 1 MSETPEPQAEPTPAAATTPPAPPPPPRVKPPRLYTAAAWVVIVAGIVFILSSVFFVGAFI 60 >gi|183985187|ref|YP_001853478.1| hypothetical protein MMAR_5218 [Mycobacterium marinum M] gi|183178513|gb|ACC43623.1| conserved hypothetical proline rich protein [Mycobacterium marinum M] Length=145 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/76 (62%), Positives = 58/76 (77%), Gaps = 0/76 (0%) Query 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLG 60 M+ET +PA PPP+ AT +PPP P EK P LYR AAWVVIVAGI F + +FF+GALV G Sbjct 1 MSETSEPATPPPAVATAAPPPPPPVEKVPALYRVAAWVVIVAGITFIASTLFFAGALVFG 60 Query 61 QGKCPYHRYYHHGMFR 76 G C +HR++HHGMF+ Sbjct 61 HGACHHHRHHHHGMFK 76 >gi|183981450|ref|YP_001849741.1| hypothetical protein MMAR_1428 [Mycobacterium marinum M] gi|183174776|gb|ACC39886.1| conserved hypothetical protein [Mycobacterium marinum M] Length=123 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/95 (37%), Positives = 48/95 (51%), Gaps = 12/95 (12%) Query 1 MTETPQP------AAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFS 54 MTE+P+ + P AA + P QQ +P RL + WV IVAG++F +AVIFF Sbjct 1 MTESPESPTQPSGSTPEDRAAEPALPHQRQQAQPSRLTQVLEWVGIVAGVLFIIAVIFFW 60 Query 55 GALVLGQGKCPYHRY-YHHGMFRPVGPVAPGPGMG 88 G + G+ Y +HHG + PG MG Sbjct 61 GFFM---GRASGDSYGWHHG--DHAAHMGPGGSMG 90 >gi|145221899|ref|YP_001132577.1| hypothetical protein Mflv_1307 [Mycobacterium gilvum PYR-GCK] gi|315446365|ref|YP_004079244.1| hypothetical protein Mspyr1_48720 [Mycobacterium sp. Spyr1] gi|145214385|gb|ABP43789.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] gi|315264668|gb|ADU01410.1| hypothetical protein Mspyr1_48720 [Mycobacterium sp. Spyr1] Length=132 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/104 (45%), Positives = 55/104 (53%), Gaps = 17/104 (16%) Query 26 EKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLGQGKCPYHRYYHHGMFRPVGPVAPGP 85 ++ RL +AAAWV I AG VF VAV+FF+G +LGQ R +H G G + PGP Sbjct 31 QESNRLNKAAAWVGIAAGAVFIVAVVFFAG-FLLGQNVDGGGRAHHGG----PGMMQPGP 85 Query 86 GMGWVFGFPGGPPPPGMGPGFPGGPGGPAVGPTGPGPTTAPARP 129 GFP GPP GF GPG GP+G GP RP Sbjct 86 A-----GFPMGPPG-----GFHHGPG--FAGPSGGGPGMDAPRP 117 >gi|254773401|ref|ZP_05214917.1| hypothetical protein MaviaA2_01801 [Mycobacterium avium subsp. avium ATCC 25291] Length=141 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/32 (72%), Positives = 27/32 (85%), Gaps = 0/32 (0%) Query 27 KPPRLYRAAAWVVIVAGIVFTVAVIFFSGALV 58 KPPRLY AAAWVVIVAGIVF ++ +FF GA + Sbjct 2 KPPRLYTAAAWVVIVAGIVFIISSVFFVGAFI 33 >gi|240172818|ref|ZP_04751477.1| hypothetical protein MkanA1_26132 [Mycobacterium kansasii ATCC 12478] Length=119 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/58 (56%), Positives = 42/58 (73%), Gaps = 3/58 (5%) Query 1 MTETPQ-PAAPPPSAATTSPPPSPQQ--EKPPRLYRAAAWVVIVAGIVFTVAVIFFSG 55 M+ETP+ P AP +A PPP+ + P++++AAAWVVIVAGIVF VAVIFF+G Sbjct 1 MSETPEIPTAPTSTAVAPPPPPAVPPAPHQTPKVFKAAAWVVIVAGIVFIVAVIFFTG 58 >gi|41406406|ref|NP_959242.1| hypothetical protein MAP0308c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394755|gb|AAS02625.1| hypothetical protein MAP_0308c [Mycobacterium avium subsp. paratuberculosis K-10] Length=181 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/58 (47%), Positives = 37/58 (64%), Gaps = 0/58 (0%) Query 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALV 58 M+ET + S AT P + + PR+++ AAWV IVAGIVF VAVIFF+G ++ Sbjct 29 MSETSETPTVRTSTATAPAPAAAAPYRTPRVFQVAAWVAIVAGIVFIVAVIFFTGFIL 86 >gi|336460883|gb|EGO39768.1| hypothetical protein MAPs_37060 [Mycobacterium avium subsp. paratuberculosis S397] Length=153 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/58 (47%), Positives = 37/58 (64%), Gaps = 0/58 (0%) Query 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALV 58 M+ET + S AT P + + PR+++ AAWV IVAGIVF VAVIFF+G ++ Sbjct 1 MSETSETPTVRTSTATAPAPAAAAPYRTPRVFQVAAWVAIVAGIVFIVAVIFFTGFIL 58 >gi|118619448|ref|YP_907780.1| hypothetical protein MUL_4292 [Mycobacterium ulcerans Agy99] gi|118571558|gb|ABL06309.1| conserved hypothetical proline rich protein [Mycobacterium ulcerans Agy99] Length=124 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/52 (64%), Positives = 40/52 (77%), Gaps = 0/52 (0%) Query 25 QEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLGQGKCPYHRYYHHGMFR 76 EK P LYR AAWVVIVAGI F + +FF+GALV G G C +HR++HHGMF+ Sbjct 1 MEKVPALYRVAAWVVIVAGITFIASTLFFAGALVFGHGACHHHRHHHHGMFK 52 >gi|118472795|ref|YP_890473.1| hypothetical protein MSMEG_6254 [Mycobacterium smegmatis str. MC2 155] gi|118174082|gb|ABK74978.1| hypothetical protein MSMEG_6254 [Mycobacterium smegmatis str. MC2 155] Length=156 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 34/52 (66%), Gaps = 3/52 (5%) Query 26 EKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLGQGKCPYHRYYHHGMFRP 77 + R+ +AAAWV IVAG+VF VAV+F +G VLG+ P H +H G RP Sbjct 48 RRHSRVVQAAAWVGIVAGVVFIVAVVFGTG-FVLGKNSGPGH--HHRGHDRP 96 >gi|120405589|ref|YP_955418.1| hypothetical protein Mvan_4637 [Mycobacterium vanbaalenii PYR-1] gi|119958407|gb|ABM15412.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=155 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/57 (37%), Positives = 33/57 (58%), Gaps = 7/57 (12%) Query 24 QQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLGQ-------GKCPYHRYYHHG 73 ++++ R+ AAWV IVAG +F V ++F +G L+ Q G+ YH +HHG Sbjct 33 REDRSGRVTHVAAWVGIVAGALFIVFLVFLAGVLLGRQSAGDDGFGRWRYHDGFHHG 89 >gi|120406440|ref|YP_956269.1| hypothetical protein Mvan_5494 [Mycobacterium vanbaalenii PYR-1] gi|119959258|gb|ABM16263.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=136 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 38/81 (47%), Positives = 44/81 (55%), Gaps = 9/81 (11%) Query 25 QEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALV---LGQGKCPYHR-YYHHG-MFRPVG 79 Q+ RL +AA WV IVAG VF VA IF +G V +G G +H HHG M P+G Sbjct 37 QQPSGRLNKAALWVGIVAGSVFIVAAIFGAGVFVGKNIGDGPRNHHIGVMHHGPMMSPMG 96 Query 80 P---VAPGPGMGWVFGFPGGP 97 P GPG FG PGGP Sbjct 97 PQGGFQRGPGSAGPFG-PGGP 116 >gi|336460882|gb|EGO39767.1| hypothetical protein MAPs_37050 [Mycobacterium avium subsp. paratuberculosis S397] Length=172 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/64 (47%), Positives = 37/64 (58%), Gaps = 6/64 (9%) Query 1 MTETPQPAAPPPSAATTSPPPSPQQEKPPR------LYRAAAWVVIVAGIVFTVAVIFFS 54 M+ETP+P A P + T P PP LY AAAWVVIVAGIVF ++ +FF Sbjct 1 MSETPEPQAEPTTPEPTPAAAVPPPPPPPERVKPPRLYTAAAWVVIVAGIVFIISSVFFV 60 Query 55 GALV 58 GA + Sbjct 61 GAFI 64 >gi|126436474|ref|YP_001072165.1| hypothetical protein Mjls_3898 [Mycobacterium sp. JLS] gi|126436481|ref|YP_001072172.1| hypothetical protein Mjls_3906 [Mycobacterium sp. JLS] gi|126236274|gb|ABN99674.1| hypothetical protein Mjls_3898 [Mycobacterium sp. JLS] gi|126236281|gb|ABN99681.1| hypothetical protein Mjls_3906 [Mycobacterium sp. JLS] Length=145 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 33/91 (37%), Positives = 42/91 (47%), Gaps = 9/91 (9%) Query 1 MTETPQPAAPPPSAAT----TSPPPSPQQE-KPPRLYRAAAWVVIVAGIVFTVAVIFFSG 55 MTE+ + +AA PSP + + R WV IVAG+VF VAVIFFSG Sbjct 15 MTESRESGTERAAAAVGERRVFESPSPYDDGRRNRSSSILVWVGIVAGVVFIVAVIFFSG 74 Query 56 ALVLGQGKCPYHRYYHH-GMFRPVGPVAPGP 85 + + YH GM +GP GP Sbjct 75 FFIGRHSDGNFRGGYHQPGM---MGPSQMGP 102 >gi|118466855|ref|YP_879682.1| hypothetical protein MAV_0397 [Mycobacterium avium 104] gi|118168142|gb|ABK69039.1| hypothetical protein MAV_0397 [Mycobacterium avium 104] Length=172 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 19/28 (68%), Positives = 23/28 (83%), Gaps = 0/28 (0%) Query 31 LYRAAAWVVIVAGIVFTVAVIFFSGALV 58 LY AAAWVVIVAGIVF ++ +FF GA + Sbjct 37 LYTAAAWVVIVAGIVFIISSVFFVGAFI 64 >gi|342861929|ref|ZP_08718573.1| hypothetical protein MCOL_23680 [Mycobacterium colombiense CECT 3035] gi|342130469|gb|EGT83778.1| hypothetical protein MCOL_23680 [Mycobacterium colombiense CECT 3035] Length=183 Score = 40.8 bits (94), Expect = 0.075, Method: Compositional matrix adjust. Identities = 27/51 (53%), Positives = 30/51 (59%), Gaps = 10/51 (19%) Query 31 LYRAAAWVVIVAGIVFTVAVIFFSGALVLGQGKCPYHRYY----HHGMFRP 77 LY AAAWVVIVAG+VF + FF GA + H YY HHGMF P Sbjct 39 LYTAAAWVVIVAGVVFILTSAFFVGAFIWK------HNYYCHHHHHGMFHP 83 >gi|254773400|ref|ZP_05214916.1| hypothetical protein MaviaA2_01796 [Mycobacterium avium subsp. avium ATCC 25291] Length=144 Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust. Identities = 18/28 (65%), Positives = 24/28 (86%), Gaps = 0/28 (0%) Query 31 LYRAAAWVVIVAGIVFTVAVIFFSGALV 58 +++ AAWV IVAGIVF VAVIFF+G ++ Sbjct 22 VFQVAAWVAIVAGIVFIVAVIFFTGFIL 49 >gi|118463566|ref|YP_879681.1| hypothetical protein MAV_0396 [Mycobacterium avium 104] gi|118164853|gb|ABK65750.1| conserved hypothetical protein [Mycobacterium avium 104] Length=144 Score = 40.4 bits (93), Expect = 0.096, Method: Compositional matrix adjust. Identities = 18/28 (65%), Positives = 24/28 (86%), Gaps = 0/28 (0%) Query 31 LYRAAAWVVIVAGIVFTVAVIFFSGALV 58 +++ AAWV IVAGIVF VAVIFF+G ++ Sbjct 22 VFQVAAWVAIVAGIVFIVAVIFFTGFIL 49 >gi|342861928|ref|ZP_08718572.1| hypothetical protein MCOL_23675 [Mycobacterium colombiense CECT 3035] gi|342130468|gb|EGT83777.1| hypothetical protein MCOL_23675 [Mycobacterium colombiense CECT 3035] Length=145 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/27 (67%), Positives = 23/27 (86%), Gaps = 0/27 (0%) Query 32 YRAAAWVVIVAGIVFTVAVIFFSGALV 58 ++ AAWV IVAGIVF VAVIFF+G ++ Sbjct 24 FQLAAWVAIVAGIVFIVAVIFFTGFIL 50 >gi|254818518|ref|ZP_05223519.1| hypothetical protein MintA_01269 [Mycobacterium intracellulare ATCC 13950] Length=83 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 18/28 (65%), Positives = 24/28 (86%), Gaps = 0/28 (0%) Query 31 LYRAAAWVVIVAGIVFTVAVIFFSGALV 58 +++ AAWV IVAGIVF VAVIFF+G ++ Sbjct 30 VFQLAAWVAIVAGIVFIVAVIFFTGFIL 57 >gi|340628680|ref|YP_004747132.1| hypothetical protein MCAN_37281 [Mycobacterium canettii CIPT 140010059] gi|340006870|emb|CCC46059.1| conserved hypothetical proline rich protein [Mycobacterium canettii CIPT 140010059] Length=106 Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust. Identities = 34/74 (46%), Positives = 44/74 (60%), Gaps = 9/74 (12%) Query 13 SAATTSPPPSPQQEKPPRLYRAAAWVVIVAGIVFTVAVIFFSGALVLGQ--GKCPYHRYY 70 S + +P PSP Q P++++AAAWV I AG VF VAVIFF+G +LG+ G +H Sbjct 5 SETSETPTPSPHQT--PKVFKAAAWVAIAAGTVFIVAVIFFTG-YILGKHAGYGGFHHRQ 61 Query 71 HHG----MFRPVGP 80 HH M RP P Sbjct 62 HHQHPAMMLRPGSP 75 >gi|240172817|ref|ZP_04751476.1| hypothetical protein MkanA1_26127 [Mycobacterium kansasii ATCC 12478] Length=122 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/38 (58%), Positives = 29/38 (77%), Gaps = 0/38 (0%) Query 38 VVIVAGIVFTVAVIFFSGALVLGQGKCPYHRYYHHGMF 75 +VIVAG++F I +GALV G GKC +HR++HHGMF Sbjct 1 MVIVAGVIFIAWSILVAGALVFGYGKCYHHRHHHHGMF 38 Lambda K H 0.318 0.144 0.497 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 128283502052 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40