BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3706c

Length=106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610842|ref|NP_218223.1|  proline rich protein [Mycobacterium...   204    4e-51
gi|340628680|ref|YP_004747132.1|  hypothetical protein MCAN_37281...   201    3e-50
gi|297636384|ref|ZP_06954164.1|  hypothetical protein MtubK4_1976...   197    5e-49
gi|167970861|ref|ZP_02553138.1|  hypothetical protein MtubH3_2358...   163    8e-39
gi|240172818|ref|ZP_04751477.1|  hypothetical protein MkanA1_2613...  95.1    3e-18
gi|183985188|ref|YP_001853479.1|  hypothetical protein MMAR_5219 ...  86.3    1e-15
gi|118619449|ref|YP_907781.1|  hypothetical protein MUL_4293 [Myc...  84.0    7e-15
gi|41406406|ref|NP_959242.1|  hypothetical protein MAP0308c [Myco...  64.7    4e-09
gi|336460883|gb|EGO39768.1|  hypothetical protein MAPs_37060 [Myc...  63.9    8e-09
gi|145221899|ref|YP_001132577.1|  hypothetical protein Mflv_1307 ...  62.8    2e-08
gi|118472795|ref|YP_890473.1|  hypothetical protein MSMEG_6254 [M...  57.4    6e-07
gi|120404607|ref|YP_954436.1|  hypothetical protein Mvan_3639 [My...  52.8    2e-05
gi|254818518|ref|ZP_05223519.1|  hypothetical protein MintA_01269...  52.0    3e-05
gi|120406440|ref|YP_956269.1|  hypothetical protein Mvan_5494 [My...  51.2    5e-05
gi|254773400|ref|ZP_05214916.1|  hypothetical protein MaviaA2_017...  49.7    1e-04
gi|118463566|ref|YP_879681.1|  hypothetical protein MAV_0396 [Myc...  49.7    1e-04
gi|15843325|ref|NP_338362.1|  hypothetical protein MT3808.1 [Myco...  49.7    1e-04
gi|308371427|ref|ZP_07667161.1|  conserved proline rich protein [...  49.7    2e-04
gi|308380776|ref|ZP_07669282.1|  conserved proline rich protein [...  49.3    2e-04
gi|308406223|ref|ZP_07669546.1|  conserved proline rich protein [...  49.3    2e-04
gi|183981450|ref|YP_001849741.1|  hypothetical protein MMAR_1428 ...  49.3    2e-04
gi|340628679|ref|YP_004747131.1|  hypothetical protein MCAN_37271...  48.9    2e-04
gi|126436474|ref|YP_001072165.1|  hypothetical protein Mjls_3898 ...  48.5    3e-04
gi|308369203|ref|ZP_07666685.1|  conserved proline rich protein [...  48.5    3e-04
gi|289572356|ref|ZP_06452583.1|  predicted protein [Mycobacterium...  48.1    4e-04
gi|342861928|ref|ZP_08718572.1|  hypothetical protein MCOL_23675 ...  47.8    6e-04
gi|120401524|ref|YP_951353.1|  hypothetical protein Mvan_0502 [My...  47.0    9e-04
gi|183982552|ref|YP_001850843.1|  hypothetical protein MMAR_2539 ...  44.3    0.007
gi|120405589|ref|YP_955418.1|  hypothetical protein Mvan_4637 [My...  43.5    0.011
gi|240173179|ref|ZP_04751837.1|  hypothetical protein MkanA1_2795...  41.6    0.036
gi|296166797|ref|ZP_06849216.1|  hypothetical protein HMPREF0591_...  41.2    0.058
gi|296165795|ref|ZP_06848301.1|  conserved hypothetical protein [...  39.7    0.17 
gi|254773401|ref|ZP_05214917.1|  hypothetical protein MaviaA2_018...  38.5    0.30 
gi|254821104|ref|ZP_05226105.1|  hypothetical protein MintA_14302...  38.1    0.42 
gi|296166798|ref|ZP_06849217.1|  hypothetical protein HMPREF0591_...  38.1    0.47 
gi|336460882|gb|EGO39767.1|  hypothetical protein MAPs_37050 [Myc...  36.6    1.4  
gi|118466855|ref|YP_879682.1|  hypothetical protein MAV_0397 [Myc...  36.6    1.4  
gi|342861929|ref|ZP_08718573.1|  hypothetical protein MCOL_23680 ...  34.7    4.3  
gi|183985187|ref|YP_001853478.1|  hypothetical protein MMAR_5218 ...  34.7    4.6  
gi|118619448|ref|YP_907780.1|  hypothetical protein MUL_4292 [Myc...  33.9    9.4  


>gi|15610842|ref|NP_218223.1| proline rich protein [Mycobacterium tuberculosis H37Rv]
 gi|15843326|ref|NP_338363.1| hypothetical protein MT3809 [Mycobacterium tuberculosis CDC1551]
 gi|31794878|ref|NP_857371.1| proline rich protein [Mycobacterium bovis AF2122/97]
 70 more sequence titles
 Length=106

 Score =  204 bits (519),  Expect = 4e-51, Method: Compositional matrix adjust.
 Identities = 106/106 (100%), Positives = 106/106 (100%), Gaps = 0/106 (0%)

Query  1    MRHMSETSETPTPPPHQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYILGKHAGHGGFHHR  60
            MRHMSETSETPTPPPHQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYILGKHAGHGGFHHR
Sbjct  1    MRHMSETSETPTPPPHQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYILGKHAGHGGFHHR  60

Query  61   QHHQHPAMMLRPGSPHGGPAAVRPGPGPGGPGQVPSSVSPPATPAP  106
            QHHQHPAMMLRPGSPHGGPAAVRPGPGPGGPGQVPSSVSPPATPAP
Sbjct  61   QHHQHPAMMLRPGSPHGGPAAVRPGPGPGGPGQVPSSVSPPATPAP  106


>gi|340628680|ref|YP_004747132.1| hypothetical protein MCAN_37281 [Mycobacterium canettii CIPT 
140010059]
 gi|340006870|emb|CCC46059.1| conserved hypothetical proline rich protein [Mycobacterium canettii 
CIPT 140010059]
Length=106

 Score =  201 bits (511),  Expect = 3e-50, Method: Compositional matrix adjust.
 Identities = 104/106 (99%), Positives = 105/106 (99%), Gaps = 0/106 (0%)

Query  1    MRHMSETSETPTPPPHQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYILGKHAGHGGFHHR  60
            MRHMSETSETPTP PHQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYILGKHAG+GGFHHR
Sbjct  1    MRHMSETSETPTPSPHQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYILGKHAGYGGFHHR  60

Query  61   QHHQHPAMMLRPGSPHGGPAAVRPGPGPGGPGQVPSSVSPPATPAP  106
            QHHQHPAMMLRPGSPHGGPAAVRPGPGPGGPGQVPSSVSPPATPAP
Sbjct  61   QHHQHPAMMLRPGSPHGGPAAVRPGPGPGGPGQVPSSVSPPATPAP  106


>gi|297636384|ref|ZP_06954164.1| hypothetical protein MtubK4_19760 [Mycobacterium tuberculosis 
KZN 4207]
 gi|339296516|gb|AEJ48627.1| hypothetical protein CCDC5079_3438 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339300116|gb|AEJ52226.1| hypothetical protein CCDC5180_3389 [Mycobacterium tuberculosis 
CCDC5180]
Length=103

 Score =  197 bits (501),  Expect = 5e-49, Method: Compositional matrix adjust.
 Identities = 103/103 (100%), Positives = 103/103 (100%), Gaps = 0/103 (0%)

Query  4    MSETSETPTPPPHQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYILGKHAGHGGFHHRQHH  63
            MSETSETPTPPPHQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYILGKHAGHGGFHHRQHH
Sbjct  1    MSETSETPTPPPHQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYILGKHAGHGGFHHRQHH  60

Query  64   QHPAMMLRPGSPHGGPAAVRPGPGPGGPGQVPSSVSPPATPAP  106
            QHPAMMLRPGSPHGGPAAVRPGPGPGGPGQVPSSVSPPATPAP
Sbjct  61   QHPAMMLRPGSPHGGPAAVRPGPGPGGPGQVPSSVSPPATPAP  103


>gi|167970861|ref|ZP_02553138.1| hypothetical protein MtubH3_23580 [Mycobacterium tuberculosis 
H37Ra]
 gi|254552817|ref|ZP_05143264.1| hypothetical protein Mtube_20617 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|294995384|ref|ZP_06801075.1| hypothetical protein Mtub2_12946 [Mycobacterium tuberculosis 
210]
 gi|297733378|ref|ZP_06962496.1| hypothetical protein MtubKR_19900 [Mycobacterium tuberculosis 
KZN R506]
 gi|313660709|ref|ZP_07817589.1| hypothetical protein MtubKV_19895 [Mycobacterium tuberculosis 
KZN V2475]
Length=86

 Score =  163 bits (412),  Expect = 8e-39, Method: Compositional matrix adjust.
 Identities = 85/86 (99%), Positives = 86/86 (100%), Gaps = 0/86 (0%)

Query  21   VFKAAAWVAIAAGTVFIVAVIFFTGYILGKHAGHGGFHHRQHHQHPAMMLRPGSPHGGPA  80
            +FKAAAWVAIAAGTVFIVAVIFFTGYILGKHAGHGGFHHRQHHQHPAMMLRPGSPHGGPA
Sbjct  1    MFKAAAWVAIAAGTVFIVAVIFFTGYILGKHAGHGGFHHRQHHQHPAMMLRPGSPHGGPA  60

Query  81   AVRPGPGPGGPGQVPSSVSPPATPAP  106
            AVRPGPGPGGPGQVPSSVSPPATPAP
Sbjct  61   AVRPGPGPGGPGQVPSSVSPPATPAP  86


>gi|240172818|ref|ZP_04751477.1| hypothetical protein MkanA1_26132 [Mycobacterium kansasii ATCC 
12478]
Length=119

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 69/117 (59%), Positives = 77/117 (66%), Gaps = 16/117 (13%)

Query  4    MSETSETPTPP----------------PHQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYI  47
            MSET E PT P                PHQTPKVFKAAAWV I AG VFIVAVIFFTG+ 
Sbjct  1    MSETPEIPTAPTSTAVAPPPPPAVPPAPHQTPKVFKAAAWVVIVAGIVFIVAVIFFTGFR  60

Query  48   LGKHAGHGGFHHRQHHQHPAMMLRPGSPHGGPAAVRPGPGPGGPGQVPSSVSPPATP  104
            LG  +GHGG+ H +HH+  AMM R G P+GG  AV P  GPGGP QVP+SV+P  TP
Sbjct  61   LGMQSGHGGYGHHRHHKPHAMMHRMGGPNGGVPAVSPSTGPGGPTQVPTSVAPATTP  117


>gi|183985188|ref|YP_001853479.1| hypothetical protein MMAR_5219 [Mycobacterium marinum M]
 gi|183178514|gb|ACC43624.1| conserved hypothetical proline rich protein [Mycobacterium marinum 
M]
Length=115

 Score = 86.3 bits (212),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 68/113 (61%), Positives = 73/113 (65%), Gaps = 12/113 (10%)

Query  4    MSETSETPTPPP-----------HQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYILGK-H  51
            MSETSET   P            HQTPKVFKAAAWVAI AG VFIV+VIFFTG+ LG   
Sbjct  1    MSETSETSAAPTSTVVAPPPPPQHQTPKVFKAAAWVAIVAGIVFIVSVIFFTGFRLGMHS  60

Query  52   AGHGGFHHRQHHQHPAMMLRPGSPHGGPAAVRPGPGPGGPGQVPSSVSPPATP  104
               G      H  HPAMMLRPG  HGG  AV PG GPGGPG+VP+SV+P  TP
Sbjct  61   GHGGFHRGHHHKHHPAMMLRPGMHHGGAPAVSPGSGPGGPGEVPTSVAPSTTP  113


>gi|118619449|ref|YP_907781.1| hypothetical protein MUL_4293 [Mycobacterium ulcerans Agy99]
 gi|118571559|gb|ABL06310.1| conserved hypothetical proline rich protein [Mycobacterium ulcerans 
Agy99]
Length=115

 Score = 84.0 bits (206),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 67/113 (60%), Positives = 72/113 (64%), Gaps = 12/113 (10%)

Query  4    MSETSETPTPPP-----------HQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYILGK-H  51
            MSETSET   P            H TPKVFKAAAWVAI AG VFIV+VIFFTG+ LG   
Sbjct  1    MSETSETSAAPTSTVVAPPPPPQHLTPKVFKAAAWVAIVAGIVFIVSVIFFTGFRLGMHS  60

Query  52   AGHGGFHHRQHHQHPAMMLRPGSPHGGPAAVRPGPGPGGPGQVPSSVSPPATP  104
               G      H  HPAMMLRPG  HGG  AV PG GPGGPG+VP+SV+P  TP
Sbjct  61   GHGGFHRGHHHKHHPAMMLRPGMHHGGAPAVSPGSGPGGPGEVPTSVAPSTTP  113


>gi|41406406|ref|NP_959242.1| hypothetical protein MAP0308c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41394755|gb|AAS02625.1| hypothetical protein MAP_0308c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=181

 Score = 64.7 bits (156),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 35/58 (61%), Positives = 40/58 (69%), Gaps = 13/58 (22%)

Query  4   MSETSETPT-------------PPPHQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYIL  48
           MSETSETPT               P++TP+VF+ AAWVAI AG VFIVAVIFFTG+IL
Sbjct  29  MSETSETPTVRTSTATAPAPAAAAPYRTPRVFQVAAWVAIVAGIVFIVAVIFFTGFIL  86


>gi|336460883|gb|EGO39768.1| hypothetical protein MAPs_37060 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=153

 Score = 63.9 bits (154),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 35/58 (61%), Positives = 40/58 (69%), Gaps = 13/58 (22%)

Query  4   MSETSETPT-------------PPPHQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYIL  48
           MSETSETPT               P++TP+VF+ AAWVAI AG VFIVAVIFFTG+IL
Sbjct  1   MSETSETPTVRTSTATAPAPAAAAPYRTPRVFQVAAWVAIVAGIVFIVAVIFFTGFIL  58


>gi|145221899|ref|YP_001132577.1| hypothetical protein Mflv_1307 [Mycobacterium gilvum PYR-GCK]
 gi|315446365|ref|YP_004079244.1| hypothetical protein Mspyr1_48720 [Mycobacterium sp. Spyr1]
 gi|145214385|gb|ABP43789.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
 gi|315264668|gb|ADU01410.1| hypothetical protein Mspyr1_48720 [Mycobacterium sp. Spyr1]
Length=132

 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 39/79 (50%), Positives = 48/79 (61%), Gaps = 5/79 (6%)

Query  15   PHQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYILGKHAGHGGFHHRQHHQHPAMML--RP  72
            P ++ ++ KAAAWV IAAG VFIVAV+FF G++LG++   GG   R HH  P MM     
Sbjct  30   PQESNRLNKAAAWVGIAAGAVFIVAVVFFAGFLLGQNVDGGG---RAHHGGPGMMQPGPA  86

Query  73   GSPHGGPAAVRPGPGPGGP  91
            G P G P     GPG  GP
Sbjct  87   GFPMGPPGGFHHGPGFAGP  105


>gi|118472795|ref|YP_890473.1| hypothetical protein MSMEG_6254 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118174082|gb|ABK74978.1| hypothetical protein MSMEG_6254 [Mycobacterium smegmatis str. 
MC2 155]
Length=156

 Score = 57.4 bits (137),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 29/51 (57%), Positives = 37/51 (73%), Gaps = 1/51 (1%)

Query  20   KVFKAAAWVAIAAGTVFIVAVIFFTGYILGKHAGHGGFHHRQHHQHPAMML  70
            +V +AAAWV I AG VFIVAV+F TG++LGK++G  G HHR H +   MM 
Sbjct  52   RVVQAAAWVGIVAGVVFIVAVVFGTGFVLGKNSG-PGHHHRGHDRPEIMMF  101


>gi|120404607|ref|YP_954436.1| hypothetical protein Mvan_3639 [Mycobacterium vanbaalenii PYR-1]
 gi|119957425|gb|ABM14430.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=153

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 32/84 (39%), Positives = 41/84 (49%), Gaps = 15/84 (17%)

Query  4   MSETSETPTPPPHQTP--------------KVFKAAAWVAIAAGTVFIVAVIFFTGYILG  49
           M+ET ET T P   T               ++ + AA V I AG VFI+A IFF+G++LG
Sbjct  1   MTETPETRTEPTAATTDRRESSAVQRDRPNRLNRIAALVGIVAGVVFIIAAIFFSGFVLG  60

Query  50  KHAGHGGFHHRQHHQHPAMMLRPG  73
            H+G G F          MM R G
Sbjct  61  AHSG-GDFGRDHRGDEFGMMNRDG  83


>gi|254818518|ref|ZP_05223519.1| hypothetical protein MintA_01269 [Mycobacterium intracellulare 
ATCC 13950]
Length=83

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 31/57 (55%), Positives = 33/57 (58%), Gaps = 12/57 (21%)

Query  4   MSETSETPTPPPHQTPK------------VFKAAAWVAIAAGTVFIVAVIFFTGYIL  48
           MSET ETPT                    VF+ AAWVAI AG VFIVAVIFFTG+IL
Sbjct  1   MSETPETPTVRTSTATAPAAAAAAYRAPRVFQLAAWVAIVAGIVFIVAVIFFTGFIL  57


>gi|120406440|ref|YP_956269.1| hypothetical protein Mvan_5494 [Mycobacterium vanbaalenii PYR-1]
 gi|119959258|gb|ABM16263.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=136

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 32/72 (45%), Positives = 40/72 (56%), Gaps = 3/72 (4%)

Query  20   KVFKAAAWVAIAAGTVFIVAVIFFTGYILGKHAGHGGFHHRQHHQHPAMMLRPGSPHGGP  79
            ++ KAA WV I AG+VFIVA IF  G  +GK+ G G  +H     H   M+ P  P GG 
Sbjct  42   RLNKAALWVGIVAGSVFIVAAIFGAGVFVGKNIGDGPRNHHIGVMHHGPMMSPMGPQGG-  100

Query  80   AAVRPGPGPGGP  91
               + GPG  GP
Sbjct  101  --FQRGPGSAGP  110


>gi|254773400|ref|ZP_05214916.1| hypothetical protein MaviaA2_01796 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=144

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 23/28 (83%), Positives = 25/28 (90%), Gaps = 0/28 (0%)

Query  21  VFKAAAWVAIAAGTVFIVAVIFFTGYIL  48
           VF+ AAWVAI AG VFIVAVIFFTG+IL
Sbjct  22  VFQVAAWVAIVAGIVFIVAVIFFTGFIL  49


>gi|118463566|ref|YP_879681.1| hypothetical protein MAV_0396 [Mycobacterium avium 104]
 gi|118164853|gb|ABK65750.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=144

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 23/28 (83%), Positives = 25/28 (90%), Gaps = 0/28 (0%)

Query  21  VFKAAAWVAIAAGTVFIVAVIFFTGYIL  48
           VF+ AAWVAI AG VFIVAVIFFTG+IL
Sbjct  22  VFQVAAWVAIVAGIVFIVAVIFFTGFIL  49


>gi|15843325|ref|NP_338362.1| hypothetical protein MT3808.1 [Mycobacterium tuberculosis CDC1551]
 gi|31794877|ref|NP_857370.1| proline rich protein [Mycobacterium bovis AF2122/97]
 gi|57117146|ref|YP_178006.1| proline rich protein [Mycobacterium tuberculosis H37Rv]
 47 more sequence titles
 Length=129

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 34/72 (48%), Positives = 42/72 (59%), Gaps = 13/72 (18%)

Query  19  PKVFKAAAWVAIAAGTVFIVAVIFFTG-YILGKHAGHGGFHHRQHHQHPAMMLRPGSPHG  77
           P++++AAAWV I AG VF VAVIFF+G  +LG+  G   +H   HH     M RP  P  
Sbjct  29  PRLYRAAAWVVIVAGIVFTVAVIFFSGALVLGQ--GKCPYHRYYHHG----MFRPVGP--  80

Query  78  GPAAVRPGPGPG  89
               V PGPG G
Sbjct  81  ----VAPGPGMG  88


>gi|308371427|ref|ZP_07667161.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu003]
 gi|308372625|ref|ZP_07667424.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu004]
 gi|308372713|ref|ZP_07667441.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu005]
 11 more sequence titles
 Length=129

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 34/72 (48%), Positives = 42/72 (59%), Gaps = 13/72 (18%)

Query  19  PKVFKAAAWVAIAAGTVFIVAVIFFTG-YILGKHAGHGGFHHRQHHQHPAMMLRPGSPHG  77
           P++++AAAWV I AG VF VAVIFF+G  +LG+  G   +H   HH     M RP  P  
Sbjct  29  PRLYRAAAWVVIVAGIVFTVAVIFFSGALVLGQ--GKCPYHRYYHHG----MFRPVGP--  80

Query  78  GPAAVRPGPGPG  89
               V PGPG G
Sbjct  81  ----VAPGPGMG  88


>gi|308380776|ref|ZP_07669282.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu011]
 gi|308360399|gb|EFP49250.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu011]
Length=154

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 34/72 (48%), Positives = 42/72 (59%), Gaps = 13/72 (18%)

Query  19  PKVFKAAAWVAIAAGTVFIVAVIFFTG-YILGKHAGHGGFHHRQHHQHPAMMLRPGSPHG  77
           P++++AAAWV I AG VF VAVIFF+G  +LG+  G   +H   HH     M RP  P  
Sbjct  29  PRLYRAAAWVVIVAGIVFTVAVIFFSGALVLGQ--GKCPYHRYYHHG----MFRPVGP--  80

Query  78  GPAAVRPGPGPG  89
               V PGPG G
Sbjct  81  ----VAPGPGMG  88


>gi|308406223|ref|ZP_07669546.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu012]
 gi|308364095|gb|EFP52946.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu012]
Length=154

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 34/72 (48%), Positives = 42/72 (59%), Gaps = 13/72 (18%)

Query  19  PKVFKAAAWVAIAAGTVFIVAVIFFTG-YILGKHAGHGGFHHRQHHQHPAMMLRPGSPHG  77
           P++++AAAWV I AG VF VAVIFF+G  +LG+  G   +H   HH     M RP  P  
Sbjct  29  PRLYRAAAWVVIVAGIVFTVAVIFFSGALVLGQ--GKCPYHRYYHHG----MFRPVGP--  80

Query  78  GPAAVRPGPGPG  89
               V PGPG G
Sbjct  81  ----VAPGPGMG  88


>gi|183981450|ref|YP_001849741.1| hypothetical protein MMAR_1428 [Mycobacterium marinum M]
 gi|183174776|gb|ACC39886.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=123

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 28/82 (35%), Positives = 41/82 (50%), Gaps = 20/82 (24%)

Query  4   MSETSETPTPPPHQTP-------------------KVFKAAAWVAIAAGTVFIVAVIFFT  44
           M+E+ E+PT P   TP                   ++ +   WV I AG +FI+AVIFF 
Sbjct  1   MTESPESPTQPSGSTPEDRAAEPALPHQRQQAQPSRLTQVLEWVGIVAGVLFIIAVIFFW  60

Query  45  GYILGKHAGHG-GFHHRQHHQH  65
           G+ +G+ +G   G+HH  H  H
Sbjct  61  GFFMGRASGDSYGWHHGDHAAH  82


>gi|340628679|ref|YP_004747131.1| hypothetical protein MCAN_37271 [Mycobacterium canettii CIPT 
140010059]
 gi|340006869|emb|CCC46058.1| conserved hypothetical proline rich protein [Mycobacterium canettii 
CIPT 140010059]
Length=129

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 34/72 (48%), Positives = 42/72 (59%), Gaps = 13/72 (18%)

Query  19  PKVFKAAAWVAIAAGTVFIVAVIFFTG-YILGKHAGHGGFHHRQHHQHPAMMLRPGSPHG  77
           P++++AAAWV I AG VF VAVIFF+G  +LG+  G   +H   HH     M RP  P  
Sbjct  29  PRLYRAAAWVVIVAGIVFTVAVIFFSGALVLGQ--GKCPYHRYYHHG----MFRPVGP--  80

Query  78  GPAAVRPGPGPG  89
               V PGPG G
Sbjct  81  ----VAPGPGMG  88


>gi|126436474|ref|YP_001072165.1| hypothetical protein Mjls_3898 [Mycobacterium sp. JLS]
 gi|126436481|ref|YP_001072172.1| hypothetical protein Mjls_3906 [Mycobacterium sp. JLS]
 gi|126236274|gb|ABN99674.1| hypothetical protein Mjls_3898 [Mycobacterium sp. JLS]
 gi|126236281|gb|ABN99681.1| hypothetical protein Mjls_3906 [Mycobacterium sp. JLS]
Length=145

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 25/62 (41%), Positives = 38/62 (62%), Gaps = 6/62 (9%)

Query  11  PTPPPHQTPKVFKAAA---WVAIAAGTVFIVAVIFFTGYILGKHAGHGGFHHRQHHQHPA  67
            +P P+   +  ++++   WV I AG VFIVAVIFF+G+ +G+H+  G F  R  +  P 
Sbjct  37  ESPSPYDDGRRNRSSSILVWVGIVAGVVFIVAVIFFSGFFIGRHS-DGNF--RGGYHQPG  93

Query  68  MM  69
           MM
Sbjct  94  MM  95


>gi|308369203|ref|ZP_07666685.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu002]
 gi|308328324|gb|EFP17175.1| conserved proline rich protein [Mycobacterium tuberculosis SUMu002]
Length=138

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 34/72 (48%), Positives = 42/72 (59%), Gaps = 13/72 (18%)

Query  19  PKVFKAAAWVAIAAGTVFIVAVIFFTG-YILGKHAGHGGFHHRQHHQHPAMMLRPGSPHG  77
           P++++AAAWV I AG VF VAVIFF+G  +LG+  G   +H   HH     M RP  P  
Sbjct  29  PRLYRAAAWVVIVAGIVFTVAVIFFSGALVLGQ--GKCPYHRYYHHG----MFRPVGP--  80

Query  78  GPAAVRPGPGPG  89
               V PGPG G
Sbjct  81  ----VAPGPGMG  88


>gi|289572356|ref|ZP_06452583.1| predicted protein [Mycobacterium tuberculosis K85]
 gi|289536787|gb|EFD41365.1| predicted protein [Mycobacterium tuberculosis K85]
Length=129

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 34/72 (48%), Positives = 41/72 (57%), Gaps = 13/72 (18%)

Query  19  PKVFKAAAWVAIAAGTVFIVAVIFFTG-YILGKHAGHGGFHHRQHHQHPAMMLRPGSPHG  77
           P+++ AAAWV I AG VF VAVIFF+G  +LG+  G   +H   HH     M RP  P  
Sbjct  29  PRLYLAAAWVVIVAGIVFTVAVIFFSGALVLGQ--GKCPYHRYYHHG----MFRPVGP--  80

Query  78  GPAAVRPGPGPG  89
               V PGPG G
Sbjct  81  ----VAPGPGMG  88


>gi|342861928|ref|ZP_08718572.1| hypothetical protein MCOL_23675 [Mycobacterium colombiense CECT 
3035]
 gi|342130468|gb|EGT83777.1| hypothetical protein MCOL_23675 [Mycobacterium colombiense CECT 
3035]
Length=145

 Score = 47.8 bits (112),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 22/27 (82%), Positives = 24/27 (89%), Gaps = 0/27 (0%)

Query  22  FKAAAWVAIAAGTVFIVAVIFFTGYIL  48
           F+ AAWVAI AG VFIVAVIFFTG+IL
Sbjct  24  FQLAAWVAIVAGIVFIVAVIFFTGFIL  50


>gi|120401524|ref|YP_951353.1| hypothetical protein Mvan_0502 [Mycobacterium vanbaalenii PYR-1]
 gi|120406355|ref|YP_956184.1| hypothetical protein Mvan_5408 [Mycobacterium vanbaalenii PYR-1]
 gi|145225983|ref|YP_001136637.1| hypothetical protein Mflv_5388 [Mycobacterium gilvum PYR-GCK]
 gi|119954342|gb|ABM11347.1| hypothetical protein Mvan_0502 [Mycobacterium vanbaalenii PYR-1]
 gi|119959173|gb|ABM16178.1| hypothetical protein Mvan_5408 [Mycobacterium vanbaalenii PYR-1]
 gi|145218446|gb|ABP47849.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=158

 Score = 47.0 bits (110),  Expect = 9e-04, Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 29/40 (73%), Gaps = 0/40 (0%)

Query  12  TPPPHQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYILGKH  51
           +P   +  ++ ++AAWV I AG VFIVAVIFF+G+ +GK 
Sbjct  24  SPGSDRPNRLTQSAAWVGIVAGVVFIVAVIFFSGFFVGKQ  63


>gi|183982552|ref|YP_001850843.1| hypothetical protein MMAR_2539 [Mycobacterium marinum M]
 gi|183175878|gb|ACC40988.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=341

 Score = 44.3 bits (103),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 30/81 (38%), Positives = 39/81 (49%), Gaps = 11/81 (13%)

Query  4   MSETSETPTPPPHQTP--------KVFKAAAWVAIAAGTVFIVAVIFFTGYILGKHAGHG  55
           M+ET E+ T P   T         ++ +  AWV I AG VFI AVIFF+   LG ++G  
Sbjct  1   MAETPESTTKPATVTSQPRYDRSGRLSQVLAWVGIIAGAVFIAAVIFFSATFLGWYSGG-  59

Query  56  GFHHRQHHQHPAMMLRPGSPH  76
             H+  H    A  L P S  
Sbjct  60  --HYSWHRGGAAGQLSPRSSQ  78


>gi|120405589|ref|YP_955418.1| hypothetical protein Mvan_4637 [Mycobacterium vanbaalenii PYR-1]
 gi|119958407|gb|ABM15412.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=155

 Score = 43.5 bits (101),  Expect = 0.011, Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query  16  HQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYILGKH-AGHGGFHHRQHHQ  64
            ++ +V   AAWV I AG +FIV ++F  G +LG+  AG  GF   ++H 
Sbjct  35  DRSGRVTHVAAWVGIVAGALFIVFLVFLAGVLLGRQSAGDDGFGRWRYHD  84


>gi|240173179|ref|ZP_04751837.1| hypothetical protein MkanA1_27951 [Mycobacterium kansasii ATCC 
12478]
Length=107

 Score = 41.6 bits (96),  Expect = 0.036, Method: Compositional matrix adjust.
 Identities = 20/39 (52%), Positives = 26/39 (67%), Gaps = 1/39 (2%)

Query  23  KAAAWVAIAAGTVFIVAVIFFTGYILGKHAGHGGFHHRQ  61
           +   WV I AG VFIVA+IFF+G+ LG+ A HG +  R 
Sbjct  31  QLLTWVGIIAGVVFIVALIFFSGFFLGR-ATHGPYGGRD  68


>gi|296166797|ref|ZP_06849216.1| hypothetical protein HMPREF0591_2657 [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897846|gb|EFG77433.1| hypothetical protein HMPREF0591_2657 [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=116

 Score = 41.2 bits (95),  Expect = 0.058, Method: Compositional matrix adjust.
 Identities = 17/27 (63%), Positives = 22/27 (82%), Gaps = 0/27 (0%)

Query  19  PKVFKAAAWVAIAAGTVFIVAVIFFTG  45
           P+++KAAAWV I AG VFI+A +FF G
Sbjct  33  PRLYKAAAWVVIVAGIVFIIATVFFAG  59


>gi|296165795|ref|ZP_06848301.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295898849|gb|EFG78349.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=113

 Score = 39.7 bits (91),  Expect = 0.17, Method: Compositional matrix adjust.
 Identities = 22/63 (35%), Positives = 35/63 (56%), Gaps = 9/63 (14%)

Query  1   MRHMSETSETPTPPPH--------QTPKVFKAAAWVAIAAGTVFIVAVIFFTGYILGKHA  52
           M H SE++E+ +P           +  ++      V I AG VF+V++IFF+G+ LG+ A
Sbjct  1   MTHESESTESISPAESGQSDSHSGRADRLDLLLTVVGIVAGVVFVVSLIFFSGFFLGR-A  59

Query  53  GHG  55
            HG
Sbjct  60  THG  62


>gi|254773401|ref|ZP_05214917.1| hypothetical protein MaviaA2_01801 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=141

 Score = 38.5 bits (88),  Expect = 0.30, Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 23/32 (72%), Gaps = 0/32 (0%)

Query  19  PKVFKAAAWVAIAAGTVFIVAVIFFTGYILGK  50
           P+++ AAAWV I AG VFI++ +FF G  + K
Sbjct  4   PRLYTAAAWVVIVAGIVFIISSVFFVGAFIWK  35


>gi|254821104|ref|ZP_05226105.1| hypothetical protein MintA_14302 [Mycobacterium intracellulare 
ATCC 13950]
Length=129

 Score = 38.1 bits (87),  Expect = 0.42, Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 23/32 (72%), Gaps = 0/32 (0%)

Query  19  PKVFKAAAWVAIAAGTVFIVAVIFFTGYILGK  50
           P+++ AAAWV I AG VFI++ +FF G  + K
Sbjct  31  PRLYTAAAWVVIVAGIVFILSSVFFVGAFIWK  62


>gi|296166798|ref|ZP_06849217.1| hypothetical protein HMPREF0591_2658 [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897847|gb|EFG77434.1| hypothetical protein HMPREF0591_2658 [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=122

 Score = 38.1 bits (87),  Expect = 0.47, Method: Compositional matrix adjust.
 Identities = 51/123 (42%), Positives = 60/123 (49%), Gaps = 23/123 (18%)

Query  4    MSETSETPTP--------------PPHQTPKVFKAAAWVAIAAGTVFIVAVIFFTGYILG  49
            MSE SE+PT               P ++TP+VF AAAWVAI AG VFIV+VIFFTG  LG
Sbjct  1    MSEASESPTARTSTATAPAPAAAQPLYKTPRVFIAAAWVAIVAGVVFIVSVIFFTGMALG  60

Query  50   KHAGH--------GGFHHRQHHQHPAMMLRPGSPHGGPAAVRPGPGPGGPGQVPSSVSPP  101
             H GH          + H  H           +           PG  GPGQ+PSSV+P 
Sbjct  61   HHGGHHHHHHKHPAAWMH-PHRMGGPGGPGGQAGVQQGGPASATPGAPGPGQIPSSVAPS  119

Query  102  ATP  104
             TP
Sbjct  120  RTP  122


>gi|336460882|gb|EGO39767.1| hypothetical protein MAPs_37050 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=172

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 0/30 (0%)

Query  21  VFKAAAWVAIAAGTVFIVAVIFFTGYILGK  50
           ++ AAAWV I AG VFI++ +FF G  + K
Sbjct  37  LYTAAAWVVIVAGIVFIISSVFFVGAFIWK  66


>gi|118466855|ref|YP_879682.1| hypothetical protein MAV_0397 [Mycobacterium avium 104]
 gi|118168142|gb|ABK69039.1| hypothetical protein MAV_0397 [Mycobacterium avium 104]
Length=172

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 0/30 (0%)

Query  21  VFKAAAWVAIAAGTVFIVAVIFFTGYILGK  50
           ++ AAAWV I AG VFI++ +FF G  + K
Sbjct  37  LYTAAAWVVIVAGIVFIISSVFFVGAFIWK  66


>gi|342861929|ref|ZP_08718573.1| hypothetical protein MCOL_23680 [Mycobacterium colombiense CECT 
3035]
 gi|342130469|gb|EGT83778.1| hypothetical protein MCOL_23680 [Mycobacterium colombiense CECT 
3035]
Length=183

 Score = 34.7 bits (78),  Expect = 4.3, Method: Compositional matrix adjust.
 Identities = 16/31 (52%), Positives = 20/31 (65%), Gaps = 0/31 (0%)

Query  21  VFKAAAWVAIAAGTVFIVAVIFFTGYILGKH  51
           ++ AAAWV I AG VFI+   FF G  + KH
Sbjct  39  LYTAAAWVVIVAGVVFILTSAFFVGAFIWKH  69


>gi|183985187|ref|YP_001853478.1| hypothetical protein MMAR_5218 [Mycobacterium marinum M]
 gi|183178513|gb|ACC43623.1| conserved hypothetical proline rich protein [Mycobacterium marinum 
M]
Length=145

 Score = 34.7 bits (78),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 23/55 (42%), Positives = 29/55 (53%), Gaps = 13/55 (23%)

Query  4   MSETSETPTPPP-------------HQTPKVFKAAAWVAIAAGTVFIVAVIFFTG  45
           MSETSE  TPPP              + P +++ AAWV I AG  FI + +FF G
Sbjct  1   MSETSEPATPPPAVATAAPPPPPPVEKVPALYRVAAWVVIVAGITFIASTLFFAG  55


>gi|118619448|ref|YP_907780.1| hypothetical protein MUL_4292 [Mycobacterium ulcerans Agy99]
 gi|118571558|gb|ABL06309.1| conserved hypothetical proline rich protein [Mycobacterium ulcerans 
Agy99]
Length=124

 Score = 33.9 bits (76),  Expect = 9.4, Method: Compositional matrix adjust.
 Identities = 13/30 (44%), Positives = 19/30 (64%), Gaps = 0/30 (0%)

Query  16  HQTPKVFKAAAWVAIAAGTVFIVAVIFFTG  45
            + P +++ AAWV I AG  FI + +FF G
Sbjct  2   EKVPALYRVAAWVVIVAGITFIASTLFFAG  31



Lambda     K      H
   0.318    0.136    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130971515392


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40