BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3711c Length=329 Score E Sequences producing significant alignments: (Bits) Value gi|15610847|ref|NP_218228.1| DNA polymerase III subunit epsilon ... 661 0.0 gi|15843331|ref|NP_338368.1| DNA polymerase III subunit epsilon ... 660 0.0 gi|344221548|gb|AEN02179.1| DNA polymerase III subunit epsilon [... 659 0.0 gi|254233206|ref|ZP_04926532.1| DNA polymerase III (epsilon subu... 659 0.0 gi|289747550|ref|ZP_06506928.1| DNA polymerase III subunit epsil... 657 0.0 gi|253800757|ref|YP_003033758.1| DNA polymerase III epsilon subu... 657 0.0 gi|31794883|ref|NP_857376.1| DNA polymerase III subunit epsilon ... 656 0.0 gi|289748229|ref|ZP_06507607.1| DNA polymerase III epsilon subun... 654 0.0 gi|340628685|ref|YP_004747137.1| putative DNA polymerase III [My... 652 0.0 gi|289572362|ref|ZP_06452589.1| DNA polymerase III epsilon subun... 652 0.0 gi|289441146|ref|ZP_06430890.1| DNA polymerase III epsilon subun... 635 3e-180 gi|289755840|ref|ZP_06515218.1| LOW QUALITY PROTEIN: DNA polymer... 627 7e-178 gi|289571955|ref|ZP_06452182.1| DNA polymerase III epsilon subun... 554 8e-156 gi|240173340|ref|ZP_04751998.1| DNA polymerase III subunit epsil... 543 1e-152 gi|118619457|ref|YP_907789.1| DNA polymerase III subunit epsilon... 526 1e-147 gi|41406411|ref|NP_959247.1| DNA polymerase III subunit epsilon ... 520 1e-145 gi|118463087|ref|YP_879676.1| DNA polymerase III subunit epsilon... 518 5e-145 gi|254818513|ref|ZP_05223514.1| DNA polymerase III subunit epsil... 509 2e-142 gi|183985197|ref|YP_001853488.1| DNA polymerase III (epsilon sub... 509 3e-142 gi|342861922|ref|ZP_08718566.1| DNA polymerase III subunit epsil... 505 3e-141 gi|296166805|ref|ZP_06849223.1| DNA-directed DNA polymerase III ... 503 2e-140 gi|336460773|gb|EGO39659.1| exonuclease, DNA polymerase III, eps... 481 5e-134 gi|315446380|ref|YP_004079259.1| DNA polymerase III subunit epsi... 458 6e-127 gi|145221884|ref|YP_001132562.1| DNA polymerase III subunit epsi... 457 9e-127 gi|108801863|ref|YP_642060.1| DNA polymerase III subunit epsilon... 448 6e-124 gi|126437831|ref|YP_001073522.1| DNA polymerase III subunit epsi... 447 9e-124 gi|120406462|ref|YP_956291.1| DNA polymerase III subunit epsilon... 446 2e-123 gi|333992634|ref|YP_004525248.1| DNA polymerase III subunit epsi... 441 9e-122 gi|118473161|ref|YP_890494.1| DNA polymerase III subunit epsilon... 440 2e-121 gi|169627433|ref|YP_001701082.1| DNA polymerase III subunit epsi... 421 9e-116 gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces... 223 4e-56 gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsi... 220 2e-55 gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces ... 217 2e-54 gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [... 216 5e-54 gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsi... 216 5e-54 gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsi... 215 7e-54 gi|345010759|ref|YP_004813113.1| DNA polymerase III subunit epsi... 214 1e-53 gi|111018828|ref|YP_701800.1| DNA polymerase III [Rhodococcus jo... 209 4e-52 gi|319950859|ref|ZP_08024742.1| DNA polymerase III [Dietzia cinn... 207 2e-51 gi|345014219|ref|YP_004816573.1| DNA polymerase III subunit epsi... 207 2e-51 gi|302533719|ref|ZP_07286061.1| DNA polymerase III subunit epsil... 205 1e-50 gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon ... 204 2e-50 gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subu... 204 2e-50 gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces... 204 2e-50 gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subun... 203 2e-50 gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsi... 202 4e-50 gi|344998861|ref|YP_004801715.1| DNA polymerase III subunit epsi... 202 4e-50 gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit ... 201 1e-49 gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsil... 201 1e-49 gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabi... 201 1e-49 >gi|15610847|ref|NP_218228.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis H37Rv] gi|148663576|ref|YP_001285099.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis H37Ra] gi|167970866|ref|ZP_02553143.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis H37Ra] 10 more sequence titles Length=329 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/329 (99%), Positives = 329/329 (100%), Gaps = 0/329 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +SHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD Sbjct 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP Sbjct 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE Sbjct 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA Sbjct 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF Sbjct 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 MECIGAVVGGASVEDFTDVAPVEKQLALF Sbjct 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >gi|15843331|ref|NP_338368.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis CDC1551] gi|148824916|ref|YP_001289670.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis F11] gi|254366256|ref|ZP_04982300.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis str. Haarlem] 23 more sequence titles Length=329 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/329 (99%), Positives = 329/329 (100%), Gaps = 0/329 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +SHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD Sbjct 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP Sbjct 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE Sbjct 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 LDVWLPVHPVTRRRWPNGRVTHDELRPLKA+AARMACPYLNPGRYVQGRPLVQGMRVGLA Sbjct 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF Sbjct 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 MECIGAVVGGASVEDFTDVAPVEKQLALF Sbjct 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >gi|344221548|gb|AEN02179.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis CTRI-2] Length=329 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/329 (99%), Positives = 328/329 (99%), Gaps = 0/329 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +SHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD Sbjct 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTAAMLDGQPQFADIAGEV DVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP Sbjct 61 PGPTHVHGLTAAMLDGQPQFADIAGEVADVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE Sbjct 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 LDVWLPVHPVTRRRWPNGRVTHDELRPLKA+AARMACPYLNPGRYVQGRPLVQGMRVGLA Sbjct 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF Sbjct 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 MECIGAVVGGASVEDFTDVAPVEKQLALF Sbjct 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >gi|254233206|ref|ZP_04926532.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis C] gi|124602999|gb|EAY61274.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium tuberculosis C] Length=329 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/329 (99%), Positives = 328/329 (99%), Gaps = 0/329 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +SHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD Sbjct 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP Sbjct 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE Sbjct 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 LDVWLPVHPVTRRRWPNGRVTHDELRPLKA+AARMACPYLNPGRYVQGRPLVQGMRVGLA Sbjct 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF Sbjct 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 MECIG VVGGASVEDFTDVAPVEKQLALF Sbjct 301 MECIGTVVGGASVEDFTDVAPVEKQLALF 329 >gi|289747550|ref|ZP_06506928.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 02_1987] gi|289759871|ref|ZP_06519249.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85] gi|294995379|ref|ZP_06801070.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 210] 7 more sequence titles Length=329 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/329 (99%), Positives = 328/329 (99%), Gaps = 0/329 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +SHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD Sbjct 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTAAMLD QPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP Sbjct 61 PGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE Sbjct 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 LDVWLPVHPVTRRRWPNGRVTHDELRPLKA+AARMACPYLNPGRYVQGRPLVQGMRVGLA Sbjct 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF Sbjct 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 MECIGAVVGGASVEDFTDVAPVEKQLALF Sbjct 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >gi|253800757|ref|YP_003033758.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 1435] gi|289555976|ref|ZP_06445186.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 605] gi|297636389|ref|ZP_06954169.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN 4207] gi|297733383|ref|ZP_06962501.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN R506] gi|313660714|ref|ZP_07817594.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN V2475] gi|253322260|gb|ACT26863.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 1435] gi|289440608|gb|EFD23101.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 605] gi|328460485|gb|AEB05908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis KZN 4207] Length=329 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/329 (99%), Positives = 328/329 (99%), Gaps = 0/329 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +SHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD Sbjct 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP Sbjct 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VDFVMCTVELARRLQLGVDNLRLETLAAHW VPQQRPHDAFDDVRVLTGILAAALESARE Sbjct 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWRVPQQRPHDAFDDVRVLTGILAAALESARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 LDVWLPVHPVTRRRWPNGRVTHDELRPLKA+AARMACPYLNPGRYVQGRPLVQGMRVGLA Sbjct 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF Sbjct 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 MECIGAVVGGASVEDFTDVAPVEKQLALF Sbjct 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >gi|31794883|ref|NP_857376.1| DNA polymerase III subunit epsilon [Mycobacterium bovis AF2122/97] gi|121639627|ref|YP_979851.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224992123|ref|YP_002646812.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str. Tokyo 172] 8 more sequence titles Length=329 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/329 (99%), Positives = 327/329 (99%), Gaps = 0/329 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +SHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD Sbjct 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTAAMLD QPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP Sbjct 61 PGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDD RVLTGILAAALESARE Sbjct 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILAAALESARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 LDVWLPVHPVTRRRWPNGRVTHDELRPLKA+AARMACPYLNPGRYVQGRPLVQGMRVGLA Sbjct 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF Sbjct 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 MECIGAVVGGASVEDFTDVAPVEKQLALF Sbjct 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >gi|289748229|ref|ZP_06507607.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T92] gi|289688816|gb|EFD56245.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T92] Length=329 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/329 (99%), Positives = 326/329 (99%), Gaps = 0/329 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +SHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD Sbjct 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTAAMLD QPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP Sbjct 61 PGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDD RVLTGILAAALESARE Sbjct 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILAAALESARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 LDVWLPVHPVTRRRWPNGRVTHDELRPLKA+AARMACPYLNPGRYVQGRPLVQGMRVGLA Sbjct 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCN TAPEHGKGYHALQLGVPVMPEARF Sbjct 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNETAPEHGKGYHALQLGVPVMPEARF 300 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 MECIGAVVGGASVEDFTDVAPVEKQLALF Sbjct 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >gi|340628685|ref|YP_004747137.1| putative DNA polymerase III [Mycobacterium canettii CIPT 140010059] gi|340006875|emb|CCC46064.1| putative DNA polymerase III (epsilon subunit) DNAQ [Mycobacterium canettii CIPT 140010059] Length=329 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/329 (99%), Positives = 326/329 (99%), Gaps = 0/329 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +SHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD Sbjct 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTAAMLD QPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP Sbjct 61 PGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDD RVLTGILAAALESARE Sbjct 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILAAALESARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 LDVWLPVHPVTRRRWPNGRVTHDELRPLKA+AARMAC YLNPGRYVQGRPLVQGMRVGLA Sbjct 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACRYLNPGRYVQGRPLVQGMRVGLA 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF Sbjct 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 MECIGAVVGGASVEDFTDVAPVEKQLALF Sbjct 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >gi|289572362|ref|ZP_06452589.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis K85] gi|289536793|gb|EFD41371.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis K85] Length=329 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/329 (99%), Positives = 326/329 (99%), Gaps = 0/329 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +SHTWGRPASHQDRGWAVIDVET GFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD Sbjct 1 MSHTWGRPASHQDRGWAVIDVETLGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTAAMLD QPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP Sbjct 61 PGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDD RVLTGILAAALESARE Sbjct 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILAAALESARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 LDVWLPVHPVTRRRWPNGRVTHDELRPLKA+AARMACPYLNPGRYVQGRPLVQGMRVGLA Sbjct 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF Sbjct 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 MECIGAVVGGASVEDFTDVAPVEKQLALF Sbjct 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >gi|289441146|ref|ZP_06430890.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T46] gi|289414065|gb|EFD11305.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T46] Length=319 Score = 635 bits (1637), Expect = 3e-180, Method: Compositional matrix adjust. Identities = 314/319 (99%), Positives = 316/319 (99%), Gaps = 0/319 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +SHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD Sbjct 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTAAMLD QPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP Sbjct 61 PGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDD RVLTGILAAALESARE Sbjct 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILAAALESARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 LDVWLPVHPVTRRRWPNGRVTHDELRPLKA+AARMACPYLNPGRYVQGRPLVQGMRVGLA Sbjct 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCN TAPEHGKGYHALQLGVPVMPEARF Sbjct 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNETAPEHGKGYHALQLGVPVMPEARF 300 Query 301 MECIGAVVGGASVEDFTDV 319 MECIGAVVGGASVEDFTDV Sbjct 301 MECIGAVVGGASVEDFTDV 319 >gi|289755840|ref|ZP_06515218.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon [Mycobacterium tuberculosis EAS054] gi|289696427|gb|EFD63856.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon [Mycobacterium tuberculosis EAS054] Length=330 Score = 627 bits (1617), Expect = 7e-178, Method: Compositional matrix adjust. Identities = 320/328 (98%), Positives = 325/328 (99%), Gaps = 0/328 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +SHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD Sbjct 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTAAMLD QPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP Sbjct 61 PGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDD RVLTGILAAALESARE Sbjct 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILAAALESARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 LDVWLPVHPVTRRRWPNGRVTHDELRPLKA+AARMACPYLNPGRYVQGRPLVQGMRVGLA Sbjct 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF Sbjct 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLAL 328 MECIGAVVGGASVEDFTDVAPVEK +++ Sbjct 301 MECIGAVVGGASVEDFTDVAPVEKAVSV 328 >gi|289571955|ref|ZP_06452182.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T17] gi|289545709|gb|EFD49357.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis T17] Length=284 Score = 554 bits (1427), Expect = 8e-156, Method: Compositional matrix adjust. Identities = 274/284 (97%), Positives = 277/284 (98%), Gaps = 0/284 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +SHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD Sbjct 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTAAMLD QPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP Sbjct 61 PGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDD RVLTGILAAALESARE Sbjct 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILAAALESARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 LDVWLPVHPVTRRRWPNGRVTHDELRPLKA+AARMACPYLNPGRYVQGRPLVQGMRVGLA Sbjct 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKG 284 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCN TAP + Sbjct 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNETAPNTARA 284 >gi|240173340|ref|ZP_04751998.1| DNA polymerase III subunit epsilon [Mycobacterium kansasii ATCC 12478] Length=329 Score = 543 bits (1399), Expect = 1e-152, Method: Compositional matrix adjust. Identities = 271/329 (83%), Positives = 299/329 (91%), Gaps = 0/329 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +SHTWGRPASH GWAVIDVETSGFRPGQARIIS+AVLGLDA GR+EQS+VSLLNP VD Sbjct 1 MSHTWGRPASHPSEGWAVIDVETSGFRPGQARIISIAVLGLDADGRVEQSLVSLLNPGVD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PG TH+HGLTA ML+ QPQFADI G+VV++LRGRTLVAHNVAFDYAFLAAEAE+A AELP Sbjct 61 PGSTHIHGLTAGMLEDQPQFADIVGDVVELLRGRTLVAHNVAFDYAFLAAEAEMAGAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VD VMCTVEL+RRL+LGVDNLRLETLAAHWGV Q+RPHDAFDD RVLTG+LAAALE ARE Sbjct 121 VDTVMCTVELSRRLELGVDNLRLETLAAHWGVIQERPHDAFDDARVLTGVLAAALERARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 +VWLPVHPVTRRRWPNGRVTHDELRPLKA+A+RM+CPYLNPGRYV GRPLVQGMRV LA Sbjct 181 REVWLPVHPVTRRRWPNGRVTHDELRPLKALASRMSCPYLNPGRYVSGRPLVQGMRVALA 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEV RTHEELVERILHAGLAYSD VDR+TSLVVCN AP+ GKGYHALQLGVPV+P+A F Sbjct 241 AEVARTHEELVERILHAGLAYSDDVDRETSLVVCNEIAPQQGKGYHALQLGVPVLPDAEF 300 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 M +G+VVGG S+E+FTD V++Q ALF Sbjct 301 MLGVGSVVGGTSMEEFTDTTMVDQQFALF 329 >gi|118619457|ref|YP_907789.1| DNA polymerase III subunit epsilon [Mycobacterium ulcerans Agy99] gi|118571567|gb|ABL06318.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium ulcerans Agy99] Length=329 Score = 526 bits (1356), Expect = 1e-147, Method: Compositional matrix adjust. Identities = 256/329 (78%), Positives = 286/329 (87%), Gaps = 0/329 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +S WGRPASH GWAV+DVETSGFRPG AR+IS+A LGLDAAG +E SVVSLLNP D Sbjct 1 MSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGGD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTAAML+ QPQFADI G++ ++LRGRTLVAHNVAFDY+FLAAEAE+ +AELP Sbjct 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFLAAEAELTDAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VD VMCTVELARRL+LG+DNLRLETLAAHWGV Q+RPHDAFDD VL+GILA AL+ ARE Sbjct 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 DVWLP+HPVTRRRWPNGRVTHDELRPLKA+A+RM CPYLNPGRYV RPLVQGMRV LA Sbjct 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEV RTHEELVERILHAGLAYSD VDR+TSLVVCN AP+ GKGYHA QLGVPV+ + +F Sbjct 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 M+ +G V+GG S E FTD VE+Q ALF Sbjct 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 >gi|41406411|ref|NP_959247.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp. paratuberculosis K-10] gi|254773395|ref|ZP_05214911.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp. avium ATCC 25291] gi|41394760|gb|AAS02630.1| DnaQ [Mycobacterium avium subsp. paratuberculosis K-10] Length=329 Score = 520 bits (1339), Expect = 1e-145, Method: Compositional matrix adjust. Identities = 266/325 (82%), Positives = 292/325 (90%), Gaps = 1/325 (0%) Query 5 WGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPT 64 WGRPAS D GWAVIDVETSGFRPGQARIISLAVLGLDA G++EQSVVSLLNP VDPGPT Sbjct 6 WGRPASEPDAGWAVIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPGVDPGPT 65 Query 65 HVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFV 124 HVHGLTAAML+ QPQFADIAG+VV+VLRGRTLVAHNVAFDYAFLAAEAE+A ELPVD V Sbjct 66 HVHGLTAAMLEDQPQFADIAGDVVEVLRGRTLVAHNVAFDYAFLAAEAELAGIELPVDTV 125 Query 125 MCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVW 184 MCTVELARRL LG+DNLRLETLAAHWGV QQRPHDAFDD VLTG+LA+AL+ ARE D+W Sbjct 126 MCTVELARRLDLGIDNLRLETLAAHWGVTQQRPHDAFDDAMVLTGVLASALQRARERDIW 185 Query 185 LPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVK 244 LPVHPVTRRRWPNGRVTHDELRPLK +A+RM CPYLNPG YV GRPLVQGMRV LAAEV+ Sbjct 186 LPVHPVTRRRWPNGRVTHDELRPLKVLASRMPCPYLNPGPYVGGRPLVQGMRVALAAEVE 245 Query 245 RTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECI 304 RTHEELVERILHAGLAYSD VDR+TSLVVCN A EHGKGY A QLGVPV+ +A+F++C+ Sbjct 246 RTHEELVERILHAGLAYSDTVDRETSLVVCNDPAAEHGKGYLARQLGVPVISDAQFLDCV 305 Query 305 GAVVGGASVEDFTDVAPVEKQLALF 329 AV+GG S+++FTD P + QLALF Sbjct 306 RAVIGGTSMDEFTDATP-DPQLALF 329 >gi|118463087|ref|YP_879676.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104] gi|118164374|gb|ABK65271.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104] Length=329 Score = 518 bits (1334), Expect = 5e-145, Method: Compositional matrix adjust. Identities = 265/325 (82%), Positives = 292/325 (90%), Gaps = 1/325 (0%) Query 5 WGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPT 64 WGRPAS D GWAVIDVETSGFRPGQARIISLAVLGLDA G++EQSVVSLLNP VDPGPT Sbjct 6 WGRPASEPDAGWAVIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPGVDPGPT 65 Query 65 HVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFV 124 HVHGLTAAML+ QPQFADIAG+VV+VLRGRTLVAHNVAFDYAFLAAEAE+A ELPVD V Sbjct 66 HVHGLTAAMLEDQPQFADIAGDVVEVLRGRTLVAHNVAFDYAFLAAEAELAGIELPVDTV 125 Query 125 MCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVW 184 MCTVELARRL LG+DNLRLETLAA+WGV QQRPHDAFDD VLTG+LA+AL+ ARE D+W Sbjct 126 MCTVELARRLDLGIDNLRLETLAAYWGVTQQRPHDAFDDAMVLTGVLASALQRARERDIW 185 Query 185 LPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVK 244 LPVHPVTRRRWPNGRVTHDELRPLK +A+RM CPYLNPG YV GRPLVQGMRV LAAEV+ Sbjct 186 LPVHPVTRRRWPNGRVTHDELRPLKVLASRMPCPYLNPGPYVGGRPLVQGMRVALAAEVE 245 Query 245 RTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECI 304 RTHEELVERILHAGLAYSD VDR+TSLVVCN A EHGKGY A QLGVPV+ +A+F++C+ Sbjct 246 RTHEELVERILHAGLAYSDTVDRETSLVVCNDPAAEHGKGYLARQLGVPVISDAQFLDCV 305 Query 305 GAVVGGASVEDFTDVAPVEKQLALF 329 AV+GG S+++FTD P + QLALF Sbjct 306 RAVIGGTSMDEFTDATP-DPQLALF 329 >gi|254818513|ref|ZP_05223514.1| DNA polymerase III subunit epsilon [Mycobacterium intracellulare ATCC 13950] Length=330 Score = 509 bits (1311), Expect = 2e-142, Method: Compositional matrix adjust. Identities = 261/325 (81%), Positives = 286/325 (88%), Gaps = 0/325 (0%) Query 5 WGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPT 64 WGRPAS D GWAVIDVETSGFRPGQARIISLAVLGLDA G +EQSVVSLLNP VDPGPT Sbjct 6 WGRPASEPDAGWAVIDVETSGFRPGQARIISLAVLGLDADGEVEQSVVSLLNPGVDPGPT 65 Query 65 HVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFV 124 HVHGLTAAML+ QPQFADIA +V+DVLRGRTLVAHNVAFDYAFLAAEAE+A+ ELPVD V Sbjct 66 HVHGLTAAMLEDQPQFADIAPDVIDVLRGRTLVAHNVAFDYAFLAAEAELADIELPVDSV 125 Query 125 MCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVW 184 MCTVELARRL LGVDNLRLETLAAHW V Q+RPHDAFDD VLTG+LA+AL+ AR+ DVW Sbjct 126 MCTVELARRLDLGVDNLRLETLAAHWSVTQERPHDAFDDAMVLTGVLASALKLARDGDVW 185 Query 185 LPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVK 244 LPVHPVTRRRWPNGRVTHDELRPLK +A+RM CPYLNPG YV GRPLVQGMRV LAAEV Sbjct 186 LPVHPVTRRRWPNGRVTHDELRPLKVLASRMPCPYLNPGPYVGGRPLVQGMRVALAAEVG 245 Query 245 RTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECI 304 RTHEELVERILHAGLAYS+ VDR+TSLVVCN APE GKGY A +LGVPV+ +A FM+C+ Sbjct 246 RTHEELVERILHAGLAYSEAVDRETSLVVCNDPAPEQGKGYLARKLGVPVISDATFMDCV 305 Query 305 GAVVGGASVEDFTDVAPVEKQLALF 329 AV+GG S+++F D + QLALF Sbjct 306 RAVIGGTSMDEFADTTNSDPQLALF 330 >gi|183985197|ref|YP_001853488.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium marinum M] gi|183178523|gb|ACC43633.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium marinum M] Length=329 Score = 509 bits (1310), Expect = 3e-142, Method: Compositional matrix adjust. Identities = 258/329 (79%), Positives = 288/329 (88%), Gaps = 0/329 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +S WGRPASH GWAV+DVETSGFRPG AR+IS+A LGLDAAG +E SVVSLLNP VD Sbjct 1 MSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTAAML+ QPQFADI G++ ++LRGRTLVAHNVAFDY+FLAAEAE+A+AELP Sbjct 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFLAAEAELADAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VD VMCTVELARRL+LG+DNLRLETLAAHWGV Q+RPHDAFDD VL+GILA AL+ ARE Sbjct 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 DVWLP+HPVTRRRWPNGRVTHDELRPLKA+A+RM CPYLNPGRYV RPLVQGMRV LA Sbjct 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEV RTHEELVERILHAGLAYSD VDR+TSLVVCN AP+ GKGYHA QLGVPV+ + +F Sbjct 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 M+ +G V+GG S E FTD VE+Q ALF Sbjct 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 >gi|342861922|ref|ZP_08718566.1| DNA polymerase III subunit epsilon [Mycobacterium colombiense CECT 3035] gi|342130462|gb|EGT83771.1| DNA polymerase III subunit epsilon [Mycobacterium colombiense CECT 3035] Length=330 Score = 505 bits (1301), Expect = 3e-141, Method: Compositional matrix adjust. Identities = 256/326 (79%), Positives = 287/326 (89%), Gaps = 0/326 (0%) Query 4 TWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGP 63 +WGRPAS D GWAV+DVETSGFRPGQARIIS+A LGLDA G +E SVVSLLNP VDPGP Sbjct 5 SWGRPASEPDAGWAVVDVETSGFRPGQARIISVAALGLDADGNVEHSVVSLLNPGVDPGP 64 Query 64 THVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDF 123 THVHGLTAAML+ QPQFADI G+V +VLRGRTLVAHNVAFDYAFLAAEAE+AE ELPVD Sbjct 65 THVHGLTAAMLEDQPQFADIVGDVAEVLRGRTLVAHNVAFDYAFLAAEAELAETELPVDS 124 Query 124 VMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDV 183 VMCTVELARRL LGV NLRLETLAAHWGV Q+RPHDAFDD VLT +LA+AL+ AR D+ Sbjct 125 VMCTVELARRLDLGVQNLRLETLAAHWGVTQERPHDAFDDAMVLTHVLASALKLARAGDI 184 Query 184 WLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEV 243 WLP+HPVTRRRWPNGRVTHDELRPLK +A+RM CPYLNPG YV GRPLVQGMRV LAAEV Sbjct 185 WLPIHPVTRRRWPNGRVTHDELRPLKVLASRMPCPYLNPGPYVGGRPLVQGMRVALAAEV 244 Query 244 KRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMEC 303 RTHEELVERILHAGLAY+D VDR+TSLVVCN A E GKGY A QLGVPV+ +A+FM+C Sbjct 245 GRTHEELVERILHAGLAYTDAVDRETSLVVCNDPAAEQGKGYLARQLGVPVISDAQFMDC 304 Query 304 IGAVVGGASVEDFTDVAPVEKQLALF 329 +GAV+GG S+++FTD + +++QLALF Sbjct 305 VGAVIGGTSMDEFTDASTLDQQLALF 330 >gi|296166805|ref|ZP_06849223.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897821|gb|EFG77409.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length=330 Score = 503 bits (1294), Expect = 2e-140, Method: Compositional matrix adjust. Identities = 261/326 (81%), Positives = 291/326 (90%), Gaps = 0/326 (0%) Query 4 TWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGP 63 +WGRPAS D GWAVIDVETSGFRPGQAR+ISLAVLGLD GR+EQSVVSLLNP VDPGP Sbjct 5 SWGRPASEPDGGWAVIDVETSGFRPGQARVISLAVLGLDDDGRVEQSVVSLLNPGVDPGP 64 Query 64 THVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDF 123 THVHGLTAAML+ QPQFAD+ +VV VL GRTLVAHNVAFDYAFLAAEAE+AEAELP+D Sbjct 65 THVHGLTAAMLEDQPQFADVVDDVVKVLDGRTLVAHNVAFDYAFLAAEAELAEAELPIDS 124 Query 124 VMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDV 183 VMCTVELARRL LG+DNLRLETLAAHWGVPQ+RPHDAFDD VLTG+LA+ALE AR+ D+ Sbjct 125 VMCTVELARRLDLGIDNLRLETLAAHWGVPQERPHDAFDDAMVLTGVLASALERARQRDI 184 Query 184 WLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEV 243 WLPVHPVTRRRWPNGRVTHDELRPLK +A+RM CPYLNPG YV+GRPLVQGMRV LAAEV Sbjct 185 WLPVHPVTRRRWPNGRVTHDELRPLKVLASRMPCPYLNPGHYVRGRPLVQGMRVALAAEV 244 Query 244 KRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMEC 303 RTHEELVERILHAGLAYSD VDR+TSLV+CN AP+ GKGY A QLG+PV+ +A+FME Sbjct 245 GRTHEELVERILHAGLAYSDAVDRETSLVICNDPAPDQGKGYLARQLGIPVISDAQFMES 304 Query 304 IGAVVGGASVEDFTDVAPVEKQLALF 329 + AVVGG S+E+FTD +++QLALF Sbjct 305 VCAVVGGTSMEEFTDTTTLDQQLALF 330 >gi|336460773|gb|EGO39659.1| exonuclease, DNA polymerase III, epsilon subunit family [Mycobacterium avium subsp. paratuberculosis S397] Length=294 Score = 481 bits (1239), Expect = 5e-134, Method: Compositional matrix adjust. Identities = 248/289 (86%), Positives = 263/289 (92%), Gaps = 0/289 (0%) Query 5 WGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPT 64 WGRPAS D GWAVIDVETSGFRPGQARIISLAVLGLDA G++EQSVVSLLNP VDPGPT Sbjct 6 WGRPASEPDAGWAVIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPGVDPGPT 65 Query 65 HVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFV 124 HVHGLTAAML+ QPQFADIAG+VV+VLRGRTLVAHNVAFDYAFLAAEAE+A ELPVD V Sbjct 66 HVHGLTAAMLEDQPQFADIAGDVVEVLRGRTLVAHNVAFDYAFLAAEAELAGIELPVDTV 125 Query 125 MCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVW 184 MCTVELARRL LG+DNLRLETLAAHWGV QQRPHDAFDD VLTG+LA+AL+ ARE D+W Sbjct 126 MCTVELARRLDLGIDNLRLETLAAHWGVTQQRPHDAFDDAMVLTGVLASALQRARERDIW 185 Query 185 LPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVK 244 LPVHPVTRRRWPNGRVTHDELRPLK +A+RM CPYLNPG YV GRPLVQGMRV LAAEV+ Sbjct 186 LPVHPVTRRRWPNGRVTHDELRPLKVLASRMPCPYLNPGPYVGGRPLVQGMRVALAAEVE 245 Query 245 RTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVP 293 RTHEELVERILHAGLAYSD VDR+TSLVVCN A EHGKGY A QLGVP Sbjct 246 RTHEELVERILHAGLAYSDTVDRETSLVVCNDPAAEHGKGYLARQLGVP 294 >gi|315446380|ref|YP_004079259.1| DNA polymerase III subunit epsilon [Mycobacterium sp. Spyr1] gi|315264683|gb|ADU01425.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. Spyr1] Length=333 Score = 458 bits (1178), Expect = 6e-127, Method: Compositional matrix adjust. Identities = 220/325 (68%), Positives = 260/325 (80%), Gaps = 0/325 (0%) Query 5 WGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPT 64 WGRPA GWAV+DVETSGFRPGQARI+S+A L L G +E+S+ SLL+P VDPGPT Sbjct 9 WGRPAHEDGAGWAVVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPGVDPGPT 68 Query 65 HVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFV 124 HVHGLTA ML+GQP F D+ G++ +VLRGRTLVAHNV FDY+FL+AEAE+ AELP+D V Sbjct 69 HVHGLTAEMLEGQPTFGDVVGDLCEVLRGRTLVAHNVGFDYSFLSAEAELVGAELPIDTV 128 Query 125 MCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVW 184 MCTVELARRL LG++NLRLETLAAHWGV Q RPHDA DD VL IL L A+E W Sbjct 129 MCTVELARRLDLGLENLRLETLAAHWGVTQMRPHDALDDAMVLAQILKPVLVRAQERRKW 188 Query 185 LPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVK 244 LPVHPV RR WPNGRVTHDE RPLKA+AARMACPY NPGR+V GRPLVQGMRV LAAEV Sbjct 189 LPVHPVGRRTWPNGRVTHDEFRPLKALAARMACPYANPGRFVSGRPLVQGMRVALAAEVG 248 Query 245 RTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECI 304 T++EL+ERI+HAGLAY++ VD TSLVVC+A APE GKGY A + GVP++P F++ + Sbjct 249 HTYDELIERIVHAGLAYTESVDAFTSLVVCDAAAPEQGKGYQAGEFGVPMLPSDEFLQRL 308 Query 305 GAVVGGASVEDFTDVAPVEKQLALF 329 AV+GG++VE+F + +P Q ALF Sbjct 309 DAVIGGSAVEEFAEPSPAGDQFALF 333 >gi|145221884|ref|YP_001132562.1| DNA polymerase III subunit epsilon [Mycobacterium gilvum PYR-GCK] gi|145214370|gb|ABP43774.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK] Length=345 Score = 457 bits (1176), Expect = 9e-127, Method: Compositional matrix adjust. Identities = 220/325 (68%), Positives = 260/325 (80%), Gaps = 0/325 (0%) Query 5 WGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPT 64 WGRPA GWAV+DVETSGFRPGQARI+S+A L L G +E+S+ SLL+P VDPGPT Sbjct 21 WGRPAHEDGAGWAVVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPGVDPGPT 80 Query 65 HVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFV 124 HVHGLTA ML+GQP F D+ G++ +VLRGRTLVAHNV FDY+FL+AEAE+ AELP+D V Sbjct 81 HVHGLTAEMLEGQPTFGDVVGDLCEVLRGRTLVAHNVGFDYSFLSAEAELVGAELPIDTV 140 Query 125 MCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVW 184 MCTVELARRL LG++NLRLETLAAHWGV Q RPHDA DD VL IL L A+E W Sbjct 141 MCTVELARRLDLGLENLRLETLAAHWGVTQMRPHDALDDAMVLAQILKPVLVRAQERRKW 200 Query 185 LPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVK 244 LPVHPV RR WPNGRVTHDE RPLKA+AARMACPY NPGR+V GRPLVQGMRV LAAEV Sbjct 201 LPVHPVGRRTWPNGRVTHDEFRPLKALAARMACPYANPGRFVSGRPLVQGMRVALAAEVG 260 Query 245 RTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECI 304 T++EL+ERI+HAGLAY++ VD TSLVVC+A APE GKGY A + GVP++P F++ + Sbjct 261 HTYDELIERIVHAGLAYTESVDAFTSLVVCDAAAPEQGKGYQAGEFGVPMLPSDEFLQRL 320 Query 305 GAVVGGASVEDFTDVAPVEKQLALF 329 AV+GG++VE+F + +P Q ALF Sbjct 321 DAVIGGSAVEEFAEPSPAGDQFALF 345 >gi|108801863|ref|YP_642060.1| DNA polymerase III subunit epsilon [Mycobacterium sp. MCS] gi|119871016|ref|YP_940968.1| DNA polymerase III subunit epsilon [Mycobacterium sp. KMS] gi|108772282|gb|ABG11004.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119697105|gb|ABL94178.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] Length=330 Score = 448 bits (1152), Expect = 6e-124, Method: Compositional matrix adjust. Identities = 215/329 (66%), Positives = 254/329 (78%), Gaps = 0/329 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 VSH WGRPA GWAV+DVETSGFRPGQARI+SLA L + G +EQS+ +LLNP VD Sbjct 2 VSHGWGRPAVDTGTGWAVVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPGVD 61 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTA ML+G P+F D+ ++ ++LRGRTLVAHNV FDY+FL AEAE+ AELP Sbjct 62 PGPTHVHGLTAEMLEGAPRFGDVVADLAELLRGRTLVAHNVGFDYSFLTAEAELVGAELP 121 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 +D VMCTVELARRL LG +NLRLETLAAHWGVPQ +PHDA DD +VL IL L ARE Sbjct 122 IDSVMCTVELARRLDLGTENLRLETLAAHWGVPQLKPHDALDDAQVLAQILKPTLARARE 181 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 WLP V+RRRWPNGRVTHD+L PL+ VAAR+ C YLNPGRY+ GRPLV+GMRV +A Sbjct 182 RRAWLPTRSVSRRRWPNGRVTHDDLHPLRMVAARLPCAYLNPGRYIAGRPLVKGMRVAVA 241 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEV RT+EEL+ER+L AGLAY+D VD +TSLV+CN E GKGY A +LGVPV+ +A F Sbjct 242 AEVTRTYEELIERLLTAGLAYTDAVDTETSLVICNQPDVEQGKGYQAQELGVPVLSDADF 301 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 + + VVGG +E+F D V Q ALF Sbjct 302 LRALDHVVGGTGIEEFFDATTVGDQFALF 330 >gi|126437831|ref|YP_001073522.1| DNA polymerase III subunit epsilon [Mycobacterium sp. JLS] gi|126237631|gb|ABO01032.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS] Length=330 Score = 447 bits (1151), Expect = 9e-124, Method: Compositional matrix adjust. Identities = 215/329 (66%), Positives = 254/329 (78%), Gaps = 0/329 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 VSH WGRPA GWAV+DVETSGFRPGQARI+SLA L + G +EQS+ +LLNP VD Sbjct 2 VSHGWGRPAVDTGTGWAVVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPGVD 61 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTA ML+G P+F DI ++ ++LRGRTLVAHNV FDY+FL AEAE+ AELP Sbjct 62 PGPTHVHGLTAEMLEGAPRFGDIVADLAELLRGRTLVAHNVGFDYSFLTAEAELVGAELP 121 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 +D VMCTVELARRL LG +NLRLETLAAHWGVPQ +PHDA DD +VL IL L ARE Sbjct 122 IDSVMCTVELARRLDLGTENLRLETLAAHWGVPQLKPHDALDDAQVLAQILKPTLARARE 181 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 WLP V+RRRWPNGRVTHD+L PL+ VAAR+ C YLNPGR++ GRPLV+GMRV +A Sbjct 182 RRAWLPTRSVSRRRWPNGRVTHDDLHPLRMVAARLPCAYLNPGRFIAGRPLVKGMRVAVA 241 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AEV RT+EEL+ER+L AGLAY+D VD +TSLV+CN E GKGY A +LGVPV+ +A F Sbjct 242 AEVTRTYEELIERLLTAGLAYTDAVDTETSLVICNQPDVEQGKGYQAQELGVPVLSDADF 301 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 + + VVGG +E+F D V Q ALF Sbjct 302 LRALDHVVGGTGIEEFFDATTVGDQFALF 330 >gi|120406462|ref|YP_956291.1| DNA polymerase III subunit epsilon [Mycobacterium vanbaalenii PYR-1] gi|119959280|gb|ABM16285.1| DNA polymerase III, epsilon subunit [Mycobacterium vanbaalenii PYR-1] Length=333 Score = 446 bits (1148), Expect = 2e-123, Method: Compositional matrix adjust. Identities = 217/325 (67%), Positives = 251/325 (78%), Gaps = 0/325 (0%) Query 5 WGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPT 64 WGRPA GWAV+DVETSGFRPGQARI+S+A L L G +E+S+ SLL+P VDPGPT Sbjct 9 WGRPADQPGAGWAVVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPGVDPGPT 68 Query 65 HVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFV 124 HVHGLTA ML GQP F D+ G++++VLRGRTLVAHNV FDY+FL AEAE+ AELPVD V Sbjct 69 HVHGLTAEMLAGQPAFGDVVGDLIEVLRGRTLVAHNVGFDYSFLTAEAEMVHAELPVDTV 128 Query 125 MCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVW 184 MCTVELARRL LG+DNLRLETLAAHWGV Q +PHDA DD VL IL L A+E W Sbjct 129 MCTVELARRLDLGLDNLRLETLAAHWGVTQMKPHDALDDAMVLAQILKPVLVRAQERRKW 188 Query 185 LPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVK 244 LPVHPV+RR WPNGR+THDE RPLKA+AARM C Y NPG +V GRPLVQGMRV L+AEV Sbjct 189 LPVHPVSRRTWPNGRITHDEFRPLKALAARMPCAYANPGVFVAGRPLVQGMRVALSAEVG 248 Query 245 RTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECI 304 THEELVERILHAGLA+++VVD TSLVVC+ APE GKGY A GVP + A F+ + Sbjct 249 HTHEELVERILHAGLAFTEVVDGHTSLVVCDDPAPEQGKGYQAGGFGVPTLGSAEFLRHL 308 Query 305 GAVVGGASVEDFTDVAPVEKQLALF 329 V+GG+++E+F D A Q LF Sbjct 309 DTVIGGSAIEEFADQASAGDQFTLF 333 >gi|333992634|ref|YP_004525248.1| DNA polymerase III subunit epsilon [Mycobacterium sp. JDM601] gi|333488602|gb|AEF37994.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium sp. JDM601] Length=329 Score = 441 bits (1134), Expect = 9e-122, Method: Compositional matrix adjust. Identities = 230/329 (70%), Positives = 262/329 (80%), Gaps = 0/329 (0%) Query 1 VSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 +S WGRPA GW V+DVETSGFRPGQAR++SLA L LDA GR+E+SV L+NP D Sbjct 1 MSALWGRPARESGDGWVVVDVETSGFRPGQARVLSLAALALDADGRIEKSVSHLVNPGTD 60 Query 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 PGPTHVHGLTA ML GQPQFAD+ EV +L GRTLVAHNVAFDY FLAAEAE+A AELP Sbjct 61 PGPTHVHGLTAEMLAGQPQFADVVDEVAALLAGRTLVAHNVAFDYTFLAAEAEMAGAELP 120 Query 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 VD VMCT+EL RRL LG+ NLRL+TLAAHWGV Q R HDA DD RVL G+L AL+ ARE Sbjct 121 VDSVMCTLELTRRLDLGLANLRLQTLAAHWGVVQTRAHDALDDARVLAGVLEPALQRARE 180 Query 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 DVWLPV PVTRRRWPNGR+TH+ELRPLKA+A+RM C YLNPGRYV+GRPLVQGMRV L+ Sbjct 181 RDVWLPVRPVTRRRWPNGRITHEELRPLKALASRMPCAYLNPGRYVRGRPLVQGMRVALS 240 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 AE +RTHEELVERIL AGLAYSDVVD +TSLV+CN +PE GKGY A +LGVP + + F Sbjct 241 AECRRTHEELVERILFAGLAYSDVVDANTSLVICNDDSPEQGKGYLARELGVPTVSDEHF 300 Query 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 M + VV G VE F D P +Q++LF Sbjct 301 MNAVTGVVHGTDVEQFADTGPAGEQISLF 329 >gi|118473161|ref|YP_890494.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str. MC2 155] gi|118174448|gb|ABK75344.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str. MC2 155] Length=337 Score = 440 bits (1131), Expect = 2e-121, Method: Compositional matrix adjust. Identities = 215/325 (67%), Positives = 250/325 (77%), Gaps = 0/325 (0%) Query 5 WGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPT 64 WGRPA GWAV+DVET+GFRPGQARI+S+A L + G +E S+ SLLNP VDPGPT Sbjct 13 WGRPADEPGSGWAVVDVETTGFRPGQARIVSVAALAVGDDGSVEHSMSSLLNPGVDPGPT 72 Query 65 HVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFV 124 HVHGLTA ML+GQP FAD+ E+++VLRGRTLVAHN FDY+FLAAEAE+ AELP+D Sbjct 73 HVHGLTAEMLEGQPCFADVVDELIEVLRGRTLVAHNAGFDYSFLAAEAELVGAELPIDTA 132 Query 125 MCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVW 184 MCTVELARRL+LG +NLRLETLAAHWGV Q +PHDA DD VL IL L AR+ VW Sbjct 133 MCTVELARRLELGTENLRLETLAAHWGVTQMKPHDALDDALVLAQILKPTLARARDRKVW 192 Query 185 LPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVK 244 LP+ +TR+RWPNG VTHDELRPLK A+R+ C Y NPG +V GRPLVQGMRV L+AEV Sbjct 193 LPLRQLTRKRWPNGHVTHDELRPLKVEASRLPCRYANPGPFVAGRPLVQGMRVALSAEVV 252 Query 245 RTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECI 304 RTHEEL+ER+LHAGLAYSD+VD TSLV+CN APE GKGY A +LGVP++ + FM + Sbjct 253 RTHEELLERVLHAGLAYSDMVDLQTSLVICNDPAPEQGKGYQAKELGVPLVRDDEFMRLL 312 Query 305 GAVVGGASVEDFTDVAPVEKQLALF 329 VVGGA VE F D Q ALF Sbjct 313 DHVVGGADVETFVDTTADGDQYALF 337 >gi|169627433|ref|YP_001701082.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus ATCC 19977] gi|169239400|emb|CAM60428.1| DNA polymerase III, epsilon subunit (DnaQ) [Mycobacterium abscessus] Length=327 Score = 421 bits (1082), Expect = 9e-116, Method: Compositional matrix adjust. Identities = 202/325 (63%), Positives = 247/325 (76%), Gaps = 1/325 (0%) Query 5 WGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPT 64 WG+ H + W V+D+ETSGF+PG+AR+IS+A L +DA G + SVVSLLNP VDPGPT Sbjct 4 WGQTPDHSPK-WVVVDLETSGFQPGRARVISVAALAMDADGTITDSVVSLLNPGVDPGPT 62 Query 65 HVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFV 124 HVHGLT ML+GQP+F+DIA +++ +LRGRTLVAHNV FDY+FLAAEAE+ AELP + V Sbjct 63 HVHGLTPEMLEGQPEFSDIAPDLIALLRGRTLVAHNVGFDYSFLAAEAELVGAELPTEAV 122 Query 125 MCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVW 184 MCTVEL RRL+L NLRLETLAAHWGV Q + HDA+DD RVL +L LE ARE W Sbjct 123 MCTVELTRRLELDTPNLRLETLAAHWGVEQLKAHDAYDDARVLAEVLPKVLERARERGTW 182 Query 185 LPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVK 244 LP+ TR+RWPNGRVTHDELRPLK +A+R C +LNPG Y G+PLVQGMRV L++EV Sbjct 183 LPIRETTRKRWPNGRVTHDELRPLKTLASRQPCHWLNPGPYTAGQPLVQGMRVALSSEVS 242 Query 245 RTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECI 304 RTHEEL+E+I+ AGLAY+D VD DTSLV+CN PE GKG+HA LGVP++ + FM + Sbjct 243 RTHEELIEQIMQAGLAYADAVDEDTSLVICNQENPEQGKGFHARSLGVPLLDDRTFMTEV 302 Query 305 GAVVGGASVEDFTDVAPVEKQLALF 329 VVGG +E FT + Q +LF Sbjct 303 RRVVGGTDIEQFTVPSRAGAQYSLF 327 >gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736] gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736] Length=623 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 126/289 (44%), Positives = 169/289 (59%), Gaps = 12/289 (4%) Query 16 WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHGLTAAMLD 75 WA++DVETSG RPG+ R++SLA+L LDA G +LLNP DPGP H+HGLT A L Sbjct 32 WALVDVETSGLRPGRDRVLSLAILTLDARGNQTGEFATLLNPGCDPGPVHIHGLTPARLA 91 Query 76 GQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELARRLQ 135 G P F +IA +V +L GR LVAHN FDY FLA E + +PV +CT+ L R + Sbjct 92 GAPTFEEIAPQVGALLSGRVLVAHNAQFDYDFLAHEFAHVRSWVPVSRRLCTLALNRLVG 151 Query 136 LGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPVHPVTRRRW 195 +L+L TLAAH+GV Q+R HDA DDVRVL+GIL +L +A L + LP+ R+ Sbjct 152 SATPDLKLGTLAAHYGVRQERAHDAQDDVRVLSGILRGSLGAAERLGLSLPLLDCPPRQ- 210 Query 196 PNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVKRTHEELVERIL 255 + +P + C Y NPGR+ G PL QGM+V + + + + EELV R + Sbjct 211 --------DYQPY---VPKTPCAYRNPGRFTPGGPLTQGMKVAITGDTQVSREELVARSV 259 Query 256 HAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECI 304 AGL V TS+VV N + GK A GVP++ E ++ + Sbjct 260 AAGLNMMTSVSGQTSVVVTNDPSTASGKLRRAADEGVPLLDEPMYLRLL 308 >gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22] gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7) [Streptomyces scabiei 87.22] Length=613 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 127/289 (44%), Positives = 167/289 (58%), Gaps = 12/289 (4%) Query 16 WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHGLTAAMLD 75 WA++DVETSG RPG+ R++SL++L LDA G +LLNP DPGP HVHGLTA L Sbjct 19 WALVDVETSGLRPGRDRVLSLSILTLDAQGNQTGEFSTLLNPDCDPGPVHVHGLTADRLA 78 Query 76 GQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELARRLQ 135 G P F +IA +V +L R LVAHN FDY FLA E + PV +CT+ L R + Sbjct 79 GAPAFEEIAPQVGALLSSRVLVAHNAQFDYDFLAHEFAQVRSWAPVSRRLCTLALNRLVG 138 Query 136 LGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPVHPVTRRRW 195 +L+L TLAAH+GV Q++ HDA DDVRVL+GIL +L +A +L + LPV R+ Sbjct 139 PATPDLKLGTLAAHYGVRQEKAHDAQDDVRVLSGILRGSLSAAEQLGLALPVLGCPPRQ- 197 Query 196 PNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVKRTHEELVERIL 255 + RP + C Y NPGR G PLVQGM+V + + + + EELV R + Sbjct 198 --------DYRPY---VPKTPCAYRNPGRMAPGGPLVQGMKVAITGDTRVSREELVARSV 246 Query 256 HAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECI 304 AGL V TS+VV NA K A GVP++ E ++ + Sbjct 247 AAGLNMMTSVSGQTSVVVTNAPGTGSAKLKRAADEGVPLVDEPTYLRLL 295 >gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] Length=658 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/306 (43%), Positives = 167/306 (55%), Gaps = 10/306 (3%) Query 16 WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHGLTAAMLD 75 WA++DVETSG + R++S+AV+ + G +LL+P DPGP HVHGLTA L Sbjct 20 WALVDVETSGLVARRDRVLSVAVVTVGPDGAQTGEFSTLLDPGCDPGPVHVHGLTAERLH 79 Query 76 GQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELARRLQ 135 G P F ++A + +L GR LVAHN FDY FLA E A LPV +CT+ L RR+ Sbjct 80 GAPAFEEVAQRISQMLEGRVLVAHNAQFDYDFLAHEFARAGVSLPVARRLCTLALNRRVD 139 Query 136 LGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPVHPVTRRRW 195 +LRL TLAAH+GVPQ R HDA DD RVL G+L A+L A LD+ LP R+ Sbjct 140 PPTQDLRLGTLAAHYGVPQLRAHDALDDTRVLAGVLRASLREAARLDLRLPFVACPPRQ- 198 Query 196 PNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVKRTHEELVERIL 255 + R T + C Y NPGR G PLVQGM++ + + ELV R + Sbjct 199 -DARFTPSP--------PKTPCAYRNPGRMAMGGPLVQGMKIAVTGPTAMSRPELVARAV 249 Query 256 HAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECIGAVVGGASVED 315 AGL V R T ++V N + K A+ GVPV+ E F+ + V G + E Sbjct 250 AAGLNVMGSVSRHTGVLVTNDRSSGSAKARRAVAEGVPVIDEQEFLRLLEDVRPGTAHET 309 Query 316 FTDVAP 321 TD AP Sbjct 310 STDAAP 315 >gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291339262|gb|EFE66218.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length=631 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 131/310 (43%), Positives = 169/310 (55%), Gaps = 11/310 (3%) Query 16 WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHGLTAAMLD 75 WA++DVETSG + R++S+AV+ + G +LLNP DPGP VHGLT L Sbjct 20 WALVDVETSGLMARRDRVLSVAVITIGPDGEQTGEFSTLLNPGCDPGPVEVHGLTVERLQ 79 Query 76 GQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELARRLQ 135 G P F +AG + +L+GR LVAHN FDY FLA E A LPV +CT+ L R++ Sbjct 80 GAPTFDQVAGRIGAMLQGRVLVAHNAQFDYDFLAHEFARARMWLPVSQRLCTLALNRQVD 139 Query 136 LGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPVHPVTRRRW 195 D+++L TLAAH+GV +QR HDA DD RVL GIL A+L A LD+ LP+ R Sbjct 140 PPTDDMKLGTLAAHYGVSRQRAHDALDDTRVLAGILRASLREAARLDLPLPLVTCPPR-- 197 Query 196 PNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVKRTHEELVERIL 255 + P A+ C Y NPGR G PL QGM+V + E ELV R + Sbjct 198 -----AESQFTPKP---AKTPCAYRNPGRLTPGGPLQQGMKVAITGETAHARAELVGRAV 249 Query 256 HAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECIGAVVGGASVED 315 AGL V R TS++V N A + K AL GVPV+ E F+ + V G + E Sbjct 250 AAGLNMMTSVSRHTSVLVTNEPAADSAKARRALAEGVPVVDERTFLRLLADVRPGTAHET 309 Query 316 F-TDVAPVEK 324 VAPV + Sbjct 310 TAARVAPVTE 319 >gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease [Sanguibacter keddieii DSM 10542] Length=611 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 136/324 (42%), Positives = 184/324 (57%), Gaps = 16/324 (4%) Query 9 ASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHG 68 AS G+AV+DVETSG P R++ +AV ++ G L +S SLL+P VDPGP HVHG Sbjct 15 ASRYPHGYAVVDVETSGLSPTHHRVLQVAVTQVEPDGALGRSWSSLLDPGVDPGPVHVHG 74 Query 69 LTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTV 128 LT L G PQ+ D+AG + +++R R LVAHN FD+ FLAAE++ A A L VD +CT+ Sbjct 75 LTRERLAGAPQYQDVAGTLDELVRDRVLVAHNARFDWGFLAAESDRARAPLSVDRRLCTL 134 Query 129 ELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPV- 187 L+RRL L V +LRL T+AAHWGV Q+R HDA DDVRVL +L +L +A L + LPV Sbjct 135 ALSRRLDLPVSDLRLATVAAHWGVQQRRAHDAEDDVRVLVEVLRHSLAAADRLGMTLPVA 194 Query 188 -----HPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAE 242 P R P +RP + + R+ C + PGR+ P VQGM++ Sbjct 195 ACGPGEPSARDGGP--------VRP--SPSPRVPCDWAWPGRWDGASPWVQGMKIVFTGP 244 Query 243 VKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFME 302 +R ++LV + AGL + TS+VVC A K A G+ ++ E F++ Sbjct 245 TERPRDDLVRLAVGAGLDVMNSASSRTSVVVCATPAATTRKLAAARAHGIEIVDERVFLD 304 Query 303 CIGAVVGGASVEDFTDVAPVEKQL 326 +G VV G V V VE L Sbjct 305 LVGRVVPGRPVGAARQVPAVEGAL 328 >gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM 43183] gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM 43183] Length=328 Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 132/305 (44%), Positives = 170/305 (56%), Gaps = 13/305 (4%) Query 16 WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHGLTAAMLD 75 W V+DVETSG RP + R++SLAVL L G L + +LL+P DPGP H+HGLT L Sbjct 16 WTVVDVETSGLRPDRHRVLSLAVLTLRPDGHLVEEFSTLLDPGCDPGPVHIHGLTPERLR 75 Query 76 GQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELARRLQ 135 G P F +A V ++L GR +VAHN AFDYAFLA E A LPV+ +CT+ L RR+ Sbjct 76 GAPTFDRVAERVAELLSGRVMVAHNAAFDYAFLAHEFGRAGLHLPVEQRLCTLALGRRIG 135 Query 136 LGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPV-----HPV 190 L +LRL TLAAH+GVPQ R HDA DD RVL G+L A+L A L V LP+ H V Sbjct 136 LPTPDLRLSTLAAHYGVPQHRAHDALDDARVLAGVLRASLADAAALGVPLPLERCSFHSV 195 Query 191 TRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVKRTHEEL 250 R NG + P++ + C + PGR G PLVQGM+V E +EL Sbjct 196 LR----NGAARNGYPPPIR----KTPCAFRCPGRMRAGGPLVQGMKVVFTGETLTPRQEL 247 Query 251 VERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECIGAVVGG 310 +R AGL V R TS++V K A GVP++ E F+ + V G Sbjct 248 ADRAAGAGLNVMSTVSRFTSVLVAADVHAASAKARRARAEGVPIIDEPTFLRLLQDVRPG 307 Query 311 ASVED 315 +++ Sbjct 308 VRLDE 312 >gi|345010759|ref|YP_004813113.1| DNA polymerase III subunit epsilon [Streptomyces violaceusniger Tu 4113] gi|344037108|gb|AEM82833.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] Length=638 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 128/299 (43%), Positives = 164/299 (55%), Gaps = 10/299 (3%) Query 16 WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHGLTAAMLD 75 WA++DVETSG + R++S+AV+ + G +LLNP DPGP VHGLT L Sbjct 20 WALVDVETSGLMARRDRVLSVAVITVGPDGEQTGEFSTLLNPGCDPGPVKVHGLTVERLQ 79 Query 76 GQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELARRLQ 135 G P F +AG + +L+ R LVAHN FDY FLA E A LPV +CT+ L R++ Sbjct 80 GAPTFDQVAGRIGAMLQDRVLVAHNAQFDYDFLAHEFARARTWLPVSQRLCTLALNRQVD 139 Query 136 LGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPVHPVTRRRW 195 +++L TLAAH+G+PQQR HDA DD RVL GIL A+L A +LD+ LP+ R Sbjct 140 PPTGDMKLGTLAAHYGIPQQRAHDALDDTRVLAGILRASLREAAQLDLPLPLVACPPRAE 199 Query 196 PNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVKRTHEELVERIL 255 T +P KA C Y NPGR G PL QGM+V + E ELV R + Sbjct 200 -----TQFTPKPPKA-----PCAYRNPGRLAPGEPLQQGMKVAITGETAHARAELVGRAV 249 Query 256 HAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECIGAVVGGASVE 314 AGL V R TS++V N A + K AL GVPV+ E F+ + V G E Sbjct 250 AAGLNMMTSVSRHTSVLVTNEPASDSAKARRALAEGVPVIDEHTFLRLLADVRPGTEHE 308 >gi|111018828|ref|YP_701800.1| DNA polymerase III [Rhodococcus jostii RHA1] gi|110818358|gb|ABG93642.1| probable DNA polymerase III [Rhodococcus jostii RHA1] Length=649 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 129/320 (41%), Positives = 175/320 (55%), Gaps = 21/320 (6%) Query 8 PASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVH 67 P H+ W V+DVETSG R R++S+A L L G +E+ +V+LLNP DPGP H+H Sbjct 66 PTGHR---WVVVDVETSGLRSSTHRVLSVAALALREDGSVERELVTLLNPGCDPGPVHIH 122 Query 68 GLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCT 127 LT L G P+F ++A +++++L GRTLVAHN +FDY FL AE A +P +CT Sbjct 123 NLTPQRLAGAPRFEEVANDLLELLDGRTLVAHNASFDYGFLDAEVRRAGMTMPTRQRLCT 182 Query 128 VELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPV 187 + L+RRL++ V N +L TLAAHW V Q R HDA+DD VLT + A + A L + LPV Sbjct 183 LALSRRLEIDVPNHKLSTLAAHWKVRQNRAHDAYDDALVLTEVFAHSASLAESLRLPLPV 242 Query 188 HPVTRRR--WPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVKR 245 RR +P+ RV R+ P+ NPGR G LVQGM++ ++ Sbjct 243 VGCADRRAVYPD-RV------------PRVESPWRNPGRLDPGVGLVQGMKLVISGSTDV 289 Query 246 THEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECIG 305 L R+ AGL + V R T +VVCN K A+ G+PV+ E + E + Sbjct 290 PRLSLAARLTAAGLDVMNSVSRQTGVVVCNDPHSSSAKVRRAVADGIPVLTERQLGEMLL 349 Query 306 AVVGGASVEDFTDVAPVEKQ 325 V G E AP E Q Sbjct 350 HVTPG---EPKAAAAPSEVQ 366 >gi|319950859|ref|ZP_08024742.1| DNA polymerase III [Dietzia cinnamea P4] gi|319435472|gb|EFV90709.1| DNA polymerase III [Dietzia cinnamea P4] Length=313 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/300 (43%), Positives = 173/300 (58%), Gaps = 10/300 (3%) Query 15 GWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHGLTAAML 74 GW V+DVETSG P R++S+A + + G + + +LLNP VDPGP HVHGLT A+L Sbjct 3 GWVVVDVETSGMTPAVDRVLSVAAVVIGDDGEVVEEFATLLNPGVDPGPVHVHGLTPALL 62 Query 75 DGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELARRL 134 G+P+F+D+A E+ VL GRT+VAHN AFD +FLAAEA A P++ +CT++ A RL Sbjct 63 AGKPRFSDVAAELGRVLDGRTVVAHNAAFDASFLAAEARRAGLAPPLERFVCTLDFAGRL 122 Query 135 QLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPVHPVTRRR 194 L +L+L TLAAH+GV Q+ HDA DD L G+ A LE A V V R Sbjct 123 HLSTADLKLSTLAAHFGVRQRAAHDAHDDALALAGVFAGLLEVAAAKGVRPSV------R 176 Query 195 WPNGRVTHDELRPLKAV--AARMACPYL--NPGRYVQGRPLVQGMRVGLAAEVKRTHEEL 250 + V H E L + A +A P L GR +G LVQGM V +V R EE+ Sbjct 177 ELDAMVAHPETGYLVSTVWAEALAAPRLWRPAGRLKRGGGLVQGMEVVFTQDVDRDPEEI 236 Query 251 VERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECIGAVVGG 310 V ++ AGL +D + TSL VC+A G+ A + G+ ++P ARF E + V G Sbjct 237 VSLVVDAGLYVADRISSRTSLAVCDAPGAVRGRTAFARKKGLELVPYARFEEMLADVAPG 296 >gi|345014219|ref|YP_004816573.1| DNA polymerase III subunit epsilon [Streptomyces violaceusniger Tu 4113] gi|344040568|gb|AEM86293.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu 4113] Length=328 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/310 (42%), Positives = 177/310 (58%), Gaps = 16/310 (5%) Query 8 PASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVH 67 PA++ +G+AV+DVET+G RI+S AV LDA G ++ +L+NP+ DPGP +H Sbjct 19 PATYP-QGYAVVDVETTGLA-RDDRIVSAAVYQLDARGAVQDHWYTLVNPQRDPGPVWIH 76 Query 68 GLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCT 127 GLT +L+G P+F +IAGE+ + L R LVAHN AFD++ LA E +++ PV +CT Sbjct 77 GLTEEVLEGAPRFPEIAGELAERLADRVLVAHNAAFDWSMLAREYARSKSAAPVRQRLCT 136 Query 128 VELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPV 187 + L++ L L + N +LETLAAH+GV Q+R H A DD RVL +L A E + LP+ Sbjct 137 IALSKELGLPLPNHKLETLAAHYGVVQRRAHHALDDARVLAETFRPSLHRAAETGLRLPL 196 Query 188 ---HPVTRRRWPNG------RVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVG 238 P+T W +G R RP + R ACPY NPGRY G LVQGMRV Sbjct 197 LACQPLT--EWSDGPTIGRQRSYRQTWRPSR---KRPACPYPNPGRYEPGGQLVQGMRVA 251 Query 239 LAAEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEA 298 + + E L +R + AGL + V R TS++V N K A G PV+ EA Sbjct 252 FSGDTSVDRELLEDRAIEAGLHVATSVSRLTSVLVTNDPDSPTSKTAKARSFGTPVIDEA 311 Query 299 RFMECIGAVV 308 FM+ + V Sbjct 312 AFMQLLQDVT 321 >gi|302533719|ref|ZP_07286061.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] gi|302442614|gb|EFL14430.1| DNA polymerase III subunit epsilon [Streptomyces sp. C] Length=332 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/308 (41%), Positives = 167/308 (55%), Gaps = 14/308 (4%) Query 14 RGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHGLTAAM 73 +G+AV+DVET+G RI+S AV LDA G +E +L+NP+ DPGPT +HGLT+AM Sbjct 25 QGYAVVDVETTGL-ARDDRIVSAAVYRLDAQGNVEDHWYTLVNPRRDPGPTWIHGLTSAM 83 Query 74 LDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELARR 133 L P FADIA E L R LVAHN FD+ +A E A A PV +CT+ L++ Sbjct 84 LQDAPLFADIAEEFAGRLADRVLVAHNAIFDWQMIAREYARASATAPVRQRLCTIALSKE 143 Query 134 LQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPV---HPV 190 L L + N +LE+LAAH+GV QQR H A DD RVL +L +A V LP+ P+ Sbjct 144 LNLPLPNHKLESLAAHYGVVQQRAHHALDDARVLAEAFRPSLHAAARDGVRLPLLECRPL 203 Query 191 TRRRWPNGRVT--------HDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAE 242 T W + T + +A R CPY NPGR+ G+PL QGMR+ + + Sbjct 204 T--EWSDSPATPRVGYQSSYGNGGSWRASRKRPPCPYPNPGRFEDGKPLRQGMRIAFSGD 261 Query 243 VKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFME 302 E L +R + AGL + V R TSL+V N K A G P++ EA F + Sbjct 262 TSVDRELLEDRAVEAGLHIATSVSRLTSLLVTNDPDSSTSKTVRAKSYGTPIVDEAAFTQ 321 Query 303 CIGAVVGG 310 + V G Sbjct 322 LLRDVAGA 329 >gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis MA-4680] gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces avermitilis MA-4680] Length=325 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/301 (42%), Positives = 170/301 (57%), Gaps = 14/301 (4%) Query 14 RGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHGLTAAM 73 +G+AV+DVET+G RIIS AV LDA G +E +++NP+ DPGP +HGLT+ + Sbjct 20 QGYAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTMVNPERDPGPVWIHGLTSDV 78 Query 74 LDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELARR 133 L+G P F DIA E L R LVAHN FD++ +A E A+++ PV +CT+ L++ Sbjct 79 LEGAPLFEDIAAEFASRLADRVLVAHNAVFDWSMIAREYARAKSQAPVRQRLCTIALSKE 138 Query 134 LQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPV---HPV 190 L L + N +LE+LAAH+GV QQR H A DD RVL +L +A V LP+ P+ Sbjct 139 LGLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFRPSLHAAARDGVRLPLLECLPL 198 Query 191 TR-------RRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEV 243 T R P+G RP + R CPY NPGRY +G+PL QGMRV + + Sbjct 199 TEWNATPRIGRQPSGGYPSGSWRPSR---KRPVCPYPNPGRYEEGKPLKQGMRVAFSGDT 255 Query 244 KRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMEC 303 E L +R + AGL + + R TSL+V N K A Q G PV+ EA F + Sbjct 256 SVDRELLEDRAVEAGLHVATSLSRLTSLLVTNDPGSGTSKTAKARQYGTPVIDEAAFGQL 315 Query 304 I 304 + Sbjct 316 L 316 >gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14] gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14] Length=653 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/299 (42%), Positives = 161/299 (54%), Gaps = 10/299 (3%) Query 16 WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHGLTAAMLD 75 WA++DVETSG + RI+S+AVL G +L+NP DPGP H+HGLTA L Sbjct 19 WALVDVETSGLIARRDRILSIAVLTFGPDGTQTGEYSTLVNPGCDPGPVHIHGLTAERLR 78 Query 76 GQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELARRLQ 135 P F +AG + +L+ R +VAHN FDY FLA E A LPV+ +CT+ L RR++ Sbjct 79 DAPAFEQVAGRIGALLQDRVMVAHNAQFDYDFLAHEFARARLCLPVNQRLCTLALNRRVE 138 Query 136 LGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPVHPVTRRRW 195 +L L +LAAH+GVPQ R HDA DD RVL GI ++L A LDV LP+ P R+ Sbjct 139 PPAADLSLASLAAHYGVPQTRAHDALDDTRVLAGIFRSSLSEAARLDVPLPLVPCPPRQD 198 Query 196 PNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVKRTHEELVERIL 255 P + C Y NPGR G PLVQGM++ + E + ELV R + Sbjct 199 PR----------FAPKPPKSPCAYRNPGRPAPGGPLVQGMKIAVTGETATSRAELVARAV 248 Query 256 HAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECIGAVVGGASVE 314 AGL V R TS +V N A K A+ GVP++ E F+ + V G E Sbjct 249 AAGLNIMSSVSRHTSALVTNDAASGSAKARRAIAEGVPILDERTFLGLLSEVRPGTPHE 307 >gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379] gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length=641 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/295 (42%), Positives = 158/295 (54%), Gaps = 10/295 (3%) Query 16 WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHGLTAAMLD 75 WA++DVETSG + R++S+AV+ + G +LL+P DPGP VHGLTA L Sbjct 20 WALVDVETSGLVARRDRVLSVAVITIGPDGEQTGEFSTLLDPGCDPGPVEVHGLTAERLR 79 Query 76 GQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELARRLQ 135 G P F +AG + +L+ R LVAHN FDY FLA E A LPV +CT+ L R++ Sbjct 80 GAPTFDQVAGRIGAMLQDRVLVAHNAQFDYDFLAHEFARARMWLPVSQRLCTLALNRQVD 139 Query 136 LGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPVHPVTRRRW 195 D+++L TLA H+ VPQQR HDA DD RVL GIL A+L A LD+ LP+ R Sbjct 140 PPTDDMKLGTLATHYDVPQQRAHDALDDTRVLAGILRASLREAARLDLPLPLVTCPPR-- 197 Query 196 PNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEVKRTHEELVERIL 255 + P + C Y NPGR PL QGM+V + E ELV R + Sbjct 198 -----AESQFTPKP---PKTPCAYRNPGRLASDGPLRQGMKVAITGETAHARAELVGRAV 249 Query 256 HAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECIGAVVGG 310 AGL V R TS++V N A K AL GVPV+ E F+ + V G Sbjct 250 AAGLNMMTSVSRHTSVLVTNEPASGSAKVRRALTEGVPVIDEHTFLRMLADVRPG 304 >gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74] Length=331 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/313 (41%), Positives = 168/313 (54%), Gaps = 15/313 (4%) Query 15 GWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHGLTAAML 74 G+AV+DVET+G RI+S AV +DA G +E +L+NP+ DPGP +HGLT+ +L Sbjct 18 GYAVVDVETTGL-ARDDRIVSAAVYRVDARGEVEDHWYTLVNPERDPGPVWIHGLTSEVL 76 Query 75 DGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELARRL 134 +G P F +IAGE+ L GR LVAHN FD++ LA E A PV +CT+ LA+ L Sbjct 77 EGAPLFPEIAGELSRRLDGRVLVAHNAVFDWSMLAREYARAGITAPVRRRLCTIALAKEL 136 Query 135 QLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESA------------RELD 182 L + N +LETLAAH+GV Q+R H A DD RVL +L +A R L Sbjct 137 ALPLPNHKLETLAAHFGVEQRRAHHALDDARVLAEAFRPSLRAAALGNVRLPLLECRPLT 196 Query 183 VW--LPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 W P PV R++ + + R CPY NPGR+ GRPLVQGMRV + Sbjct 197 EWSDSPARPVIGRQYGGQYGSRPAAGNWRPSRKRPPCPYPNPGRWEDGRPLVQGMRVAFS 256 Query 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 + E L +R AGL + + R TSL+V N K A Q G PV+ EA F Sbjct 257 GDTSTERELLEDRATEAGLHVAGSISRLTSLLVTNDPDSGTSKTVRARQYGTPVVDEAAF 316 Query 301 MECIGAVVGGASV 313 + + V SV Sbjct 317 GQLLRDVAPAGSV 329 >gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec] gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec] Length=389 Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 133/306 (44%), Positives = 174/306 (57%), Gaps = 12/306 (3%) Query 9 ASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHG 68 A+ R +AV+DVET+G P + R++S+AV+ A G +E +LL+P DPGP H+HG Sbjct 70 AARFRRPYAVVDVETTGLSPTRDRVLSVAVVLTAADGTVEHRWSTLLDPGCDPGPVHIHG 129 Query 69 LTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTV 128 LT L G P FA +A EV +L GR LVAHN AFD+ LA EA +PV++ +CT+ Sbjct 130 LTRQRLAGSPTFAAVADEVAGLLAGRVLVAHNAAFDWRMLAGEAMRIGTTIPVEWRLCTL 189 Query 129 ELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPVH 188 LA RL L + +LRL +LAA+WGV Q+R HDA DD VL +L L+ R D +L + Sbjct 190 TLASRLGLELPSLRLASLAAYWGVVQRRAHDAQDDAEVLAALLPRILQ--RAADQYLEL- 246 Query 189 PVTRRRWPNGRVTHD--ELRPLKAVAARMA--CPYLNPGRYVQGRPLVQGMRVGLAAEVK 244 P+TR V HD +RP + AA C Y NPGR G LVQGMRV + + Sbjct 247 PLTR-----CGVDHDGVTVRPPRFAAAGRTPPCRYRNPGRLDPGAALVQGMRVAFSGPTR 301 Query 245 RTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMECI 304 ELV R + AGL ++ V R TSL+V N K A L PV E F+E + Sbjct 302 TERGELVGRAVAAGLHVTETVSRRTSLLVTNDARGVTRKVRTAALLNTPVRGEEDFLELL 361 Query 305 GAVVGG 310 AV G Sbjct 362 AAVRPG 367 >gi|344998861|ref|YP_004801715.1| DNA polymerase III subunit epsilon [Streptomyces sp. SirexAA-E] gi|344314487|gb|AEN09175.1| DNA polymerase III, epsilon subunit [Streptomyces sp. SirexAA-E] Length=333 Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 127/310 (41%), Positives = 173/310 (56%), Gaps = 13/310 (4%) Query 14 RGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHGLTAAM 73 +G+AV+DVET+G RI+S AV LDA G +E +L+NP+ DPGP +HGLT+ Sbjct 17 QGYAVVDVETTGLA-RDDRIVSAAVYRLDALGDVEDHWYTLVNPERDPGPVWIHGLTSEA 75 Query 74 LDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELARR 133 L+G P F ++A ++ + L GR LVAHN AFD++ LA E A PV +CT+ L++ Sbjct 76 LEGAPLFPEVAAQLSERLDGRVLVAHNAAFDWSMLAREYARAAITAPVRQRLCTIALSKE 135 Query 134 LQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPV---HPV 190 L+L + N +LE+LAAH+GV QQR H A DD RVL +L +A V LP+ P+ Sbjct 136 LRLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFRPSLHAAARGGVRLPLLECRPL 195 Query 191 TRRRWPNG----RVTHDELR---PLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAEV 243 T W + RV + R +A R ACPY NPGRY +PLVQGMRV + + Sbjct 196 T--EWTDSPVAPRVGYQPSRGQGTWRASRKRPACPYPNPGRYESDKPLVQGMRVAFSGDT 253 Query 244 KRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMEC 303 E L +R + AGL + V R TSL+V N K A G P++ E+ F Sbjct 254 SVDRELLEDRAVEAGLHVATSVSRLTSLLVTNDPDAATSKTVKAKSFGTPILEESAFTHL 313 Query 304 IGAVVGGASV 313 + V SV Sbjct 314 LRDVAPARSV 323 >gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit [Streptomyces flavogriseus ATCC 33331] Length=346 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 125/301 (42%), Positives = 171/301 (57%), Gaps = 13/301 (4%) Query 14 RGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHGLTAAM 73 +G+AV+DVET+G RIIS AV LDA G +E +L+NP+ DPGP +HGLT+ + Sbjct 30 QGYAVVDVETTGLA-RDDRIISAAVYRLDARGDVEDHWYTLVNPERDPGPVWIHGLTSDV 88 Query 74 LDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELARR 133 L+G P F +A E+ + L GR LVAHN AFD++ +A E A PV+ +CT+ LA+ Sbjct 89 LEGAPLFPQVAAELSERLAGRVLVAHNAAFDWSMIAREYARAAVTAPVEQRLCTIALAKE 148 Query 134 LQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPV---HPV 190 L+L + N +LE+LAAH+GV QQ H A DD RVL +L +A + V LP+ P+ Sbjct 149 LRLPLPNHKLESLAAHFGVVQQHAHHALDDARVLAEAFRPSLHAAAKGGVRLPLLECRPL 208 Query 191 TRRRWPNGRVT-HDELRPLKAVAA------RMACPYLNPGRYVQGRPLVQGMRVGLAAEV 243 T W + VT RP + + R ACPY NPGRY +PL+QGMRV + + Sbjct 209 T--EWYDSPVTPRAGYRPSQGQGSWRPSRKRPACPYPNPGRYESDKPLMQGMRVAFSGDT 266 Query 244 KRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFMEC 303 E L +R + AGL + V R TSL+V N K A G PV+ E+ F Sbjct 267 SIDRELLEDRAVEAGLHVATSVSRLTSLLVTNDPDSATSKTVKAKSFGTPVLEESAFTHL 326 Query 304 I 304 + Sbjct 327 L 327 >gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC 29083] Length=327 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/302 (42%), Positives = 166/302 (55%), Gaps = 15/302 (4%) Query 14 RGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHGLTAAM 73 +G+AV+DVET+G RIIS AV LDA G +E +L+NP+ DPGP +HGLT+ Sbjct 21 QGYAVVDVETTGL-ARDDRIISAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSDA 79 Query 74 LDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELARR 133 L+G P F DIA E L GR LVAHN FD+ +A E A PV +CT+ L++ Sbjct 80 LEGAPLFQDIADEFSSRLDGRVLVAHNAVFDWQMIAREYARAGRVAPVSQRLCTIVLSKE 139 Query 134 LQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPVH---PV 190 L L + N +LE+LAAH+GV QQR H A DD RVL +L +A V LP+H P+ Sbjct 140 LGLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFRPSLRAAAARSVRLPLHECRPL 199 Query 191 T--------RRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLAAE 242 T R+ G RP + R ACPY NPGRY G+PL QGMR+ + + Sbjct 200 TEWTDRAVPRQSAGYGGYRTTSWRPTR---KRPACPYPNPGRYEDGKPLKQGMRIAFSGD 256 Query 243 VKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARFME 302 + L +R + AGL + + R TSL+V N K A Q G PV+ EA F + Sbjct 257 TSIERDLLEDRAIEAGLHVATSISRLTSLLVTNDPDSGTSKVVKARQFGTPVVDEAAFGQ 316 Query 303 CI 304 + Sbjct 317 LL 318 >gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22] gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22] Length=331 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 127/305 (42%), Positives = 170/305 (56%), Gaps = 15/305 (4%) Query 14 RGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVDPGPTHVHGLTAAM 73 +G+AV+DVET+G RIIS AV LDA G +E +L+NP+ DPGP +HGLT+ + Sbjct 20 QGYAVVDVETTGLA-RDDRIISAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSDV 78 Query 74 LDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFVMCTVELARR 133 L+G P F DIA E L R LVAHN FD++ +A E AE E PV +CT+ L++ Sbjct 79 LEGAPLFRDIAQEFSARLADRVLVAHNAVFDWSMIAREYARAETEAPVRQRLCTIALSKE 138 Query 134 LQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARELDVWLPVH---PV 190 L L + N +LE+LAAH+GV QQR H A DD RVL +L +A +V LP+H P+ Sbjct 139 LGLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFRPSLRAAAASNVRLPLHECRPL 198 Query 191 TRRR---------WPNGRVTHDELRPL--KAVAARMACPYLNPGRYVQGRPLVQGMRVGL 239 T R G + RP + R ACP+ NPGRY G+PL QGMRV Sbjct 199 TEWRESPAAPRIGQQAGPGGYGAYRPTSWRPSRKRPACPHPNPGRYEDGKPLKQGMRVAF 258 Query 240 AAEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEAR 299 + + + L +R + AGL + + R TSL+V N K A Q G PV+ EA Sbjct 259 SGDTSVERDLLEDRAIEAGLHVATSLSRVTSLLVTNDPDSHTSKVVKARQYGTPVVDEAA 318 Query 300 FMECI 304 F + + Sbjct 319 FGQLL 323 Lambda K H 0.322 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 583580000052 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40