BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3716c
Length=133
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610852|ref|NP_218233.1| hypothetical protein Rv3716c [Mycob... 249 8e-65
gi|148824921|ref|YP_001289675.1| hypothetical protein TBFG_13748... 238 2e-61
gi|118619461|ref|YP_907793.1| hypothetical protein MUL_4307 [Myc... 175 2e-42
gi|289441152|ref|ZP_06430896.1| conserved hypothetical protein [... 154 4e-36
gi|240171026|ref|ZP_04749685.1| hypothetical protein MkanA1_1707... 148 2e-34
gi|41406415|ref|NP_959251.1| hypothetical protein MAP0317c [Myco... 136 1e-30
gi|118465573|ref|YP_879672.1| hypothetical protein MAV_0387 [Myc... 131 4e-29
gi|296166810|ref|ZP_06849228.1| conserved hypothetical protein [... 128 3e-28
gi|254818508|ref|ZP_05223509.1| hypothetical protein MintA_01219... 126 1e-27
gi|342861917|ref|ZP_08718561.1| hypothetical protein MCOL_23620 ... 125 2e-27
gi|118468755|ref|YP_890499.1| hypothetical protein MSMEG_6280 [M... 115 3e-24
gi|145221879|ref|YP_001132557.1| hypothetical protein Mflv_1287 ... 113 8e-24
gi|15828253|ref|NP_302516.1| hypothetical protein ML2330 [Mycoba... 112 2e-23
gi|108801867|ref|YP_642064.1| hypothetical protein Mmcs_4904 [My... 112 2e-23
gi|257057603|ref|YP_003135435.1| hypothetical protein Svir_36560... 111 3e-23
gi|120406471|ref|YP_956300.1| hypothetical protein Mvan_5528 [My... 107 4e-22
gi|134096869|ref|YP_001102530.1| hypothetical protein SACE_0254 ... 107 5e-22
gi|237784775|ref|YP_002905480.1| hypothetical protein ckrop_0143... 106 1e-21
gi|297193079|ref|ZP_06910477.1| UPF0133 protein [Streptomyces pr... 105 2e-21
gi|284028400|ref|YP_003378331.1| hypothetical protein Kfla_0408 ... 105 2e-21
gi|305680093|ref|ZP_07402903.1| DNA-binding protein, YbaB/EbfC f... 105 3e-21
gi|345016267|ref|YP_004818621.1| hypothetical protein Strvi_9043... 105 3e-21
gi|225020183|ref|ZP_03709375.1| hypothetical protein CORMATOL_00... 105 3e-21
gi|333992644|ref|YP_004525258.1| hypothetical protein JDM601_400... 102 1e-20
gi|328883422|emb|CCA56661.1| hypothetical protein co-occurring w... 102 2e-20
gi|345000609|ref|YP_004803463.1| hypothetical protein SACTE_3055... 102 2e-20
gi|21222035|ref|NP_627814.1| hypothetical protein SCO3619 [Strep... 102 3e-20
gi|333917900|ref|YP_004491481.1| hypothetical protein AS9A_0221 ... 101 3e-20
gi|291006688|ref|ZP_06564661.1| hypothetical protein SeryN2_1937... 101 3e-20
gi|302544191|ref|ZP_07296533.1| conserved hypothetical YaaK [Str... 101 5e-20
gi|302520197|ref|ZP_07272539.1| conserved hypothetical protein [... 100 7e-20
gi|302535334|ref|ZP_07287676.1| conserved hypothetical protein [... 100 8e-20
gi|254393635|ref|ZP_05008764.1| conserved hypothetical protein [... 99.8 1e-19
gi|291438249|ref|ZP_06577639.1| conserved hypothetical protein [... 99.8 1e-19
gi|29831099|ref|NP_825733.1| hypothetical protein SAV_4556 [Stre... 99.8 1e-19
gi|296141676|ref|YP_003648919.1| hypothetical protein Tpau_4009 ... 98.6 3e-19
gi|318061708|ref|ZP_07980429.1| hypothetical protein SSA3_27468 ... 98.6 3e-19
gi|333026054|ref|ZP_08454118.1| hypothetical protein STTU_3558 [... 98.6 3e-19
gi|326441840|ref|ZP_08216574.1| hypothetical protein SclaA2_1228... 98.6 3e-19
gi|38232883|ref|NP_938650.1| hypothetical protein DIP0260 [Coryn... 98.2 3e-19
gi|294630547|ref|ZP_06709107.1| conserved hypothetical protein [... 98.2 4e-19
gi|320009949|gb|ADW04799.1| Uncharacterized protein family UPF01... 97.8 5e-19
gi|291303585|ref|YP_003514863.1| hypothetical protein Snas_6147 ... 97.4 6e-19
gi|336176668|ref|YP_004582043.1| hypothetical protein FsymDg_059... 97.4 6e-19
gi|329939342|ref|ZP_08288678.1| hypothetical protein SGM_4170 [S... 97.4 7e-19
gi|54022258|ref|YP_116500.1| hypothetical protein nfa2940 [Nocar... 97.1 9e-19
gi|295837977|ref|ZP_06824910.1| conserved hypothetical protein [... 96.3 1e-18
gi|297201257|ref|ZP_06918654.1| conserved hypothetical protein [... 95.9 2e-18
gi|111220098|ref|YP_710892.1| hypothetical protein FRAAL0611 [Fr... 95.5 2e-18
gi|319950864|ref|ZP_08024747.1| hypothetical protein ES5_14688 [... 95.5 2e-18
>gi|15610852|ref|NP_218233.1| hypothetical protein Rv3716c [Mycobacterium tuberculosis H37Rv]
gi|15843337|ref|NP_338374.1| hypothetical protein MT3819 [Mycobacterium tuberculosis CDC1551]
gi|31794888|ref|NP_857381.1| hypothetical protein Mb3743c [Mycobacterium bovis AF2122/97]
60 more sequence titles
Length=133
Score = 249 bits (637), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 133/133 (100%), Positives = 133/133 (100%), Gaps = 0/133 (0%)
Query 1 MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPK 60
MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPK
Sbjct 1 MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPK 60
Query 61 VVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPGMPG 120
VVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPGMPG
Sbjct 61 VVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPGMPG 120
Query 121 MPGAPGAPPVPGI 133
MPGAPGAPPVPGI
Sbjct 121 MPGAPGAPPVPGI 133
>gi|148824921|ref|YP_001289675.1| hypothetical protein TBFG_13748 [Mycobacterium tuberculosis F11]
gi|306786628|ref|ZP_07424950.1| hypothetical protein TMCG_01220 [Mycobacterium tuberculosis SUMu003]
gi|306974190|ref|ZP_07486851.1| hypothetical protein TMJG_00968 [Mycobacterium tuberculosis SUMu010]
14 more sequence titles
Length=127
Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/127 (100%), Positives = 127/127 (100%), Gaps = 0/127 (0%)
Query 7 MSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDD 66
MSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDD
Sbjct 1 MSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDD 60
Query 67 IETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPGMPGMPGAPG 126
IETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPGMPGMPGAPG
Sbjct 61 IETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPGMPGMPGAPG 120
Query 127 APPVPGI 133
APPVPGI
Sbjct 121 APPVPGI 127
>gi|118619461|ref|YP_907793.1| hypothetical protein MUL_4307 [Mycobacterium ulcerans Agy99]
gi|183985201|ref|YP_001853492.1| hypothetical protein MMAR_5232 [Mycobacterium marinum M]
gi|118571571|gb|ABL06322.1| conserved protein [Mycobacterium ulcerans Agy99]
gi|183178527|gb|ACC43637.1| conserved protein [Mycobacterium marinum M]
Length=147
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/143 (84%), Positives = 124/143 (87%), Gaps = 11/143 (7%)
Query 1 MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPK 60
MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLV+V V+GSGE++GVTIDPK
Sbjct 1 MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVQVAVRGSGELVGVTIDPK 60
Query 61 VVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAP----------- 109
VVD DDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPP P AP
Sbjct 61 VVDRDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPGAPGAPGAPGAPGMPPR 120
Query 110 PGAPGMPGMPGMPGAPGAPPVPG 132
PGAPGMPGMPG PGAPG P +PG
Sbjct 121 PGAPGMPGMPGAPGAPGMPGMPG 143
>gi|289441152|ref|ZP_06430896.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289571960|ref|ZP_06452187.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289748234|ref|ZP_06507612.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289755847|ref|ZP_06515225.1| predicted protein [Mycobacterium tuberculosis EAS054]
gi|289414071|gb|EFD11311.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289545714|gb|EFD49362.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289688821|gb|EFD56250.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289696434|gb|EFD63863.1| predicted protein [Mycobacterium tuberculosis EAS054]
Length=130
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/96 (100%), Positives = 96/96 (100%), Gaps = 0/96 (0%)
Query 1 MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPK 60
MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPK
Sbjct 1 MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPK 60
Query 61 VVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGAL 96
VVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGAL
Sbjct 61 VVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGAL 96
>gi|240171026|ref|ZP_04749685.1| hypothetical protein MkanA1_17074 [Mycobacterium kansasii ATCC
12478]
Length=126
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/79 (95%), Positives = 77/79 (98%), Gaps = 0/79 (0%)
Query 23 EAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDDIETLQDLIVGAMRDAS 82
EAQ QLANSEVHGQAGGGLV+V VKGSGEVIGVTIDPKVVDP+DIETLQDLIVGAMRDAS
Sbjct 17 EAQHQLANSEVHGQAGGGLVQVRVKGSGEVIGVTIDPKVVDPNDIETLQDLIVGAMRDAS 76
Query 83 QQVTKMAQERLGALAGAMR 101
QQVTKMAQERLGALAGAMR
Sbjct 77 QQVTKMAQERLGALAGAMR 95
>gi|41406415|ref|NP_959251.1| hypothetical protein MAP0317c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|81415002|sp|Q744M4.1|Y317_MYCPA RecName: Full=UPF0133 protein MAP_0317c
gi|41394764|gb|AAS02634.1| hypothetical protein MAP_0317c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=116
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/98 (85%), Positives = 91/98 (93%), Gaps = 0/98 (0%)
Query 3 PGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVV 62
PGGDMSALLAQAQQMQQKL+EAQQQLAN+EVHGQAGGGLVKVVVKGSGEV+ V IDP VV
Sbjct 5 PGGDMSALLAQAQQMQQKLMEAQQQLANAEVHGQAGGGLVKVVVKGSGEVVAVKIDPSVV 64
Query 63 DPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAM 100
DP D+ETLQDL+VGAM DAS+QVT+MAQERLG+LAG
Sbjct 65 DPSDVETLQDLVVGAMADASKQVTRMAQERLGSLAGGF 102
>gi|118465573|ref|YP_879672.1| hypothetical protein MAV_0387 [Mycobacterium avium 104]
gi|254773391|ref|ZP_05214907.1| hypothetical protein MaviaA2_01751 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118166860|gb|ABK67757.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336460777|gb|EGO39663.1| DNA-binding protein, YbaB/EbfC family [Mycobacterium avium subsp.
paratuberculosis S397]
Length=108
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/78 (83%), Positives = 71/78 (92%), Gaps = 0/78 (0%)
Query 23 EAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDDIETLQDLIVGAMRDAS 82
EAQQQLAN+EVHGQAGGGLVKVVVKGSGEV+ V IDP VVDP D+ETLQDL+VGAM DAS
Sbjct 17 EAQQQLANAEVHGQAGGGLVKVVVKGSGEVVAVKIDPSVVDPSDVETLQDLVVGAMADAS 76
Query 83 QQVTKMAQERLGALAGAM 100
+QVT+MAQERLG+LAG
Sbjct 77 KQVTRMAQERLGSLAGGF 94
>gi|296166810|ref|ZP_06849228.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897826|gb|EFG77414.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=113
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/92 (86%), Positives = 87/92 (95%), Gaps = 0/92 (0%)
Query 1 MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPK 60
MQPGGDMSALLAQAQQMQQKL+EAQQQLAN+E+HGQAGGGLVKV VKGSGEV+ V IDP+
Sbjct 1 MQPGGDMSALLAQAQQMQQKLMEAQQQLANAEIHGQAGGGLVKVTVKGSGEVVAVQIDPQ 60
Query 61 VVDPDDIETLQDLIVGAMRDASQQVTKMAQER 92
VVDP D+ETLQDLIVGAM DAS+QVT+MAQER
Sbjct 61 VVDPADVETLQDLIVGAMADASKQVTRMAQER 92
>gi|254818508|ref|ZP_05223509.1| hypothetical protein MintA_01219 [Mycobacterium intracellulare
ATCC 13950]
Length=108
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/74 (84%), Positives = 68/74 (92%), Gaps = 0/74 (0%)
Query 23 EAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDDIETLQDLIVGAMRDAS 82
EAQQQLAN+EVHGQAGGGLV VVVKGSGEV+ V IDP VVDP D+ETLQDLIVGAM DAS
Sbjct 17 EAQQQLANAEVHGQAGGGLVSVVVKGSGEVVAVKIDPSVVDPSDVETLQDLIVGAMADAS 76
Query 83 QQVTKMAQERLGAL 96
+QVT+MAQERLG+L
Sbjct 77 KQVTRMAQERLGSL 90
>gi|342861917|ref|ZP_08718561.1| hypothetical protein MCOL_23620 [Mycobacterium colombiense CECT
3035]
gi|342130457|gb|EGT83766.1| hypothetical protein MCOL_23620 [Mycobacterium colombiense CECT
3035]
Length=108
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/74 (84%), Positives = 68/74 (92%), Gaps = 0/74 (0%)
Query 23 EAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDDIETLQDLIVGAMRDAS 82
EAQQQLAN+EVHGQAGGGLV VVVKGSGEV+ V IDP VVDP D+ETLQDLIVGAM DAS
Sbjct 17 EAQQQLANAEVHGQAGGGLVSVVVKGSGEVVAVKIDPSVVDPSDVETLQDLIVGAMGDAS 76
Query 83 QQVTKMAQERLGAL 96
+QVT+MAQERLG+L
Sbjct 77 KQVTRMAQERLGSL 90
>gi|118468755|ref|YP_890499.1| hypothetical protein MSMEG_6280 [Mycobacterium smegmatis str.
MC2 155]
gi|118170042|gb|ABK70938.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=102
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/71 (79%), Positives = 64/71 (91%), Gaps = 0/71 (0%)
Query 22 LEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDDIETLQDLIVGAMRDA 81
+EAQ+ LAN+EVHGQAGGGLV+V VKGSGEV+ V IDPKVVDPDD+ETLQDLIVGA+ DA
Sbjct 16 MEAQEALANAEVHGQAGGGLVQVTVKGSGEVVSVQIDPKVVDPDDVETLQDLIVGALSDA 75
Query 82 SQQVTKMAQER 92
S+QVT MAQ R
Sbjct 76 SKQVTIMAQSR 86
>gi|145221879|ref|YP_001132557.1| hypothetical protein Mflv_1287 [Mycobacterium gilvum PYR-GCK]
gi|315446386|ref|YP_004079265.1| hypothetical protein Mspyr1_48940 [Mycobacterium sp. Spyr1]
gi|189038652|sp|A4T623.1|Y1287_MYCGI RecName: Full=UPF0133 protein Mflv_1287
gi|145214365|gb|ABP43769.1| conserved hypothetical protein 103 [Mycobacterium gilvum PYR-GCK]
gi|315264689|gb|ADU01431.1| conserved hypothetical protein TIGR00103 [Mycobacterium sp. Spyr1]
Length=110
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/94 (75%), Positives = 86/94 (92%), Gaps = 2/94 (2%)
Query 1 MQPGG--DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTID 58
MQPGG DMSALLAQAQQ+QQ+L+EAQ+ LAN+EVHGQAGGGLV+V +KGSGEV+GV+ID
Sbjct 1 MQPGGQPDMSALLAQAQQVQQQLMEAQEALANAEVHGQAGGGLVQVTMKGSGEVVGVSID 60
Query 59 PKVVDPDDIETLQDLIVGAMRDASQQVTKMAQER 92
PKVVDP D+ETLQDLIVGA+ DA++QVT +A ++
Sbjct 61 PKVVDPSDVETLQDLIVGAIADAAKQVTILAHDK 94
>gi|15828253|ref|NP_302516.1| hypothetical protein ML2330 [Mycobacterium leprae TN]
gi|221230730|ref|YP_002504146.1| hypothetical protein MLBr_02330 [Mycobacterium leprae Br4923]
gi|12644596|sp|O69519.1|Y2330_MYCLE RecName: Full=UPF0133 protein ML2330
gi|254801300|sp|B8ZT20.1|Y2330_MYCLB RecName: Full=UPF0133 protein MLBr02330
gi|3150108|emb|CAA19160.1| hypothetical protein MLCB2407.20 [Mycobacterium leprae]
gi|13093946|emb|CAC31846.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933837|emb|CAR72428.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=116
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/101 (87%), Positives = 93/101 (93%), Gaps = 0/101 (0%)
Query 1 MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPK 60
MQPGGDMSALLAQAQQMQQKLLE QQQLAN++VHGQ GGGLV+VVVKGSGEV+ V IDPK
Sbjct 1 MQPGGDMSALLAQAQQMQQKLLETQQQLANAQVHGQGGGGLVEVVVKGSGEVVSVAIDPK 60
Query 61 VVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMR 101
VVDP DIETLQDLIVGAM DAS+QVTK+AQERLGAL AMR
Sbjct 61 VVDPGDIETLQDLIVGAMADASKQVTKLAQERLGALTSAMR 101
>gi|108801867|ref|YP_642064.1| hypothetical protein Mmcs_4904 [Mycobacterium sp. MCS]
gi|119871020|ref|YP_940972.1| hypothetical protein Mkms_4993 [Mycobacterium sp. KMS]
gi|126437835|ref|YP_001073526.1| hypothetical protein Mjls_5272 [Mycobacterium sp. JLS]
6 more sequence titles
Length=110
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/99 (77%), Positives = 88/99 (89%), Gaps = 2/99 (2%)
Query 1 MQPGG--DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTID 58
MQPGG DMSALLAQAQQMQQ+L+EAQ+ LANSEVHGQAGGGLV+V +KGSGEV V ID
Sbjct 1 MQPGGQPDMSALLAQAQQMQQQLMEAQESLANSEVHGQAGGGLVQVTMKGSGEVTSVAID 60
Query 59 PKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALA 97
PKVVDPDD+ETLQDL+VGA+ DA++QVT +A +RLG LA
Sbjct 61 PKVVDPDDVETLQDLVVGAIADAAKQVTILAHDRLGPLA 99
>gi|257057603|ref|YP_003135435.1| hypothetical protein Svir_36560 [Saccharomonospora viridis DSM
43017]
gi|256587475|gb|ACU98608.1| conserved hypothetical protein TIGR00103 [Saccharomonospora viridis
DSM 43017]
Length=118
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/117 (53%), Positives = 81/117 (70%), Gaps = 3/117 (2%)
Query 1 MQPGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTI 57
+QPGG DM +L QAQ+MQ++L+ AQQ+LAN+EV G +GGGLV V GS E+ ++I
Sbjct 2 VQPGGGMPDMQQILQQAQKMQEQLVTAQQELANAEVTGTSGGGLVTATVSGSLELKSLSI 61
Query 58 DPKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPG 114
DPKVVDP+D ETL DL+V A+RDA K+ +E+LG LAG++ P G PG
Sbjct 62 DPKVVDPEDTETLSDLVVAAVRDAMNNAQKLTEEKLGPLAGSLGGGMPDLGGFGLPG 118
>gi|120406471|ref|YP_956300.1| hypothetical protein Mvan_5528 [Mycobacterium vanbaalenii PYR-1]
gi|166227326|sp|A1TGJ4.1|Y5528_MYCVP RecName: Full=UPF0133 protein Mvan_5528
gi|119959289|gb|ABM16294.1| conserved hypothetical protein 103 [Mycobacterium vanbaalenii
PYR-1]
Length=110
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/94 (73%), Positives = 84/94 (90%), Gaps = 2/94 (2%)
Query 1 MQPGG--DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTID 58
MQPGG DMSALLAQAQQ+QQ+L+EAQ+ LAN+EV+GQAGGGLV+V ++GSGEV+ V ID
Sbjct 1 MQPGGQPDMSALLAQAQQVQQQLMEAQEALANAEVNGQAGGGLVQVTMRGSGEVVAVRID 60
Query 59 PKVVDPDDIETLQDLIVGAMRDASQQVTKMAQER 92
PKVVDP D+ETLQDLIVGA+ DA++QVT +A +R
Sbjct 61 PKVVDPSDVETLQDLIVGAVADAAKQVTILAHDR 94
>gi|134096869|ref|YP_001102530.1| hypothetical protein SACE_0254 [Saccharopolyspora erythraea NRRL
2338]
gi|254765195|sp|A4F6D0.1|Y254_SACEN RecName: Full=UPF0133 protein SACE_0254
gi|133909492|emb|CAL99604.1| hypothetical protein SACE_0254 [Saccharopolyspora erythraea NRRL
2338]
Length=116
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/96 (58%), Positives = 73/96 (77%), Gaps = 2/96 (2%)
Query 1 MQPGG--DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTID 58
MQPGG +M ++ QAQ+MQQ+L+ AQQ+LA +EV G AGGGLV VV GSGE+ V ID
Sbjct 1 MQPGGQPNMQQIMEQAQKMQQQLMTAQQELAEAEVSGSAGGGLVTAVVSGSGELKSVAID 60
Query 59 PKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLG 94
PK VDPDD +TL DL+V A+RDA++ ++ QE++G
Sbjct 61 PKAVDPDDTDTLSDLVVAAVRDANRAAQELQQEKMG 96
>gi|237784775|ref|YP_002905480.1| hypothetical protein ckrop_0143 [Corynebacterium kroppenstedtii
DSM 44385]
gi|259646389|sp|C4LG87.1|Y143_CORK4 RecName: Full=UPF0133 protein ckrop_0143
gi|237757687|gb|ACR16937.1| conserved hypothetical protein [Corynebacterium kroppenstedtii
DSM 44385]
Length=100
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/95 (53%), Positives = 72/95 (76%), Gaps = 0/95 (0%)
Query 6 DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPD 65
D + ++AQAQQMQ++L Q ++A SE+ G AG GLVKV +KG+GEV VTID VVDPD
Sbjct 5 DFNEIMAQAQQMQEELQRVQGEIAQSEISGSAGNGLVKVTMKGTGEVTNVTIDKSVVDPD 64
Query 66 DIETLQDLIVGAMRDASQQVTKMAQERLGALAGAM 100
D++TLQDL++GA++DA+ + AQE++G + A+
Sbjct 65 DVDTLQDLVLGALQDANTALQSYAQEKMGPFSQAL 99
>gi|297193079|ref|ZP_06910477.1| UPF0133 protein [Streptomyces pristinaespiralis ATCC 25486]
gi|197719791|gb|EDY63699.1| UPF0133 protein [Streptomyces pristinaespiralis ATCC 25486]
Length=113
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/123 (51%), Positives = 81/123 (66%), Gaps = 18/123 (14%)
Query 3 PGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDP 59
PGG +M LL QAQ+MQQ L +AQ++LA +EV GQAGGGLVK V GSGE+ G+ IDP
Sbjct 5 PGGGQPNMQQLLQQAQKMQQDLAKAQEELAQTEVEGQAGGGLVKATVTGSGELRGLVIDP 64
Query 60 KVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPGMP 119
K VDP+D ETL DL+V A++ A++ ++ Q++LG P A G+ GMP
Sbjct 65 KAVDPEDTETLADLVVAAVQAANENAQQLQQDKLG---------------PLAQGLGGMP 109
Query 120 GMP 122
GMP
Sbjct 110 GMP 112
>gi|284028400|ref|YP_003378331.1| hypothetical protein Kfla_0408 [Kribbella flavida DSM 17836]
gi|283807693|gb|ADB29532.1| conserved hypothetical protein [Kribbella flavida DSM 17836]
Length=154
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/84 (62%), Positives = 64/84 (77%), Gaps = 0/84 (0%)
Query 6 DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPD 65
DMS LLAQAQ MQ +L+EAQ L N EV G AGGGLV +V G+GE++ +TI+PK VDPD
Sbjct 13 DMSELLAQAQAMQNQLMEAQANLENQEVEGTAGGGLVTAMVSGTGELLSLTINPKAVDPD 72
Query 66 DIETLQDLIVGAMRDASQQVTKMA 89
D ETL DLIV A+RDAS+ ++A
Sbjct 73 DTETLADLIVAAVRDASENAKEVA 96
>gi|305680093|ref|ZP_07402903.1| DNA-binding protein, YbaB/EbfC family [Corynebacterium matruchotii
ATCC 14266]
gi|305660713|gb|EFM50210.1| DNA-binding protein, YbaB/EbfC family [Corynebacterium matruchotii
ATCC 14266]
Length=115
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/95 (59%), Positives = 73/95 (77%), Gaps = 0/95 (0%)
Query 6 DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPD 65
DMS +LAQAQ+MQ KL AQ+++ +S V GQAG GLV V ++GSG V V IDPKV+DP+
Sbjct 16 DMSDILAQAQEMQAKLQAAQEEIMSSIVIGQAGNGLVSVSMQGSGTVTSVNIDPKVIDPE 75
Query 66 DIETLQDLIVGAMRDASQQVTKMAQERLGALAGAM 100
D +TLQDL+VGA DA Q+ K+AQ+++G L GAM
Sbjct 76 DPDTLQDLLVGAYNDAHGQLAKIAQDKMGPLQGAM 110
>gi|345016267|ref|YP_004818621.1| hypothetical protein Strvi_9043 [Streptomyces violaceusniger
Tu 4113]
gi|344042616|gb|AEM88341.1| UPF0133 protein ybaB [Streptomyces violaceusniger Tu 4113]
Length=111
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/125 (50%), Positives = 79/125 (64%), Gaps = 18/125 (14%)
Query 1 MQPGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTI 57
M PGG +M LL QAQ+MQQ L AQ++LA + V G AGGGLVK V GSGE+ G+ I
Sbjct 1 MIPGGGQPNMQQLLQQAQKMQQDLAAAQEELARTHVEGSAGGGLVKATVTGSGELQGLVI 60
Query 58 DPKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPG 117
DPK VDP+D ETL DL+V A+RDA+ ++ Q++LG P A G+ G
Sbjct 61 DPKAVDPEDTETLADLVVAAVRDANNAAQELQQQKLG---------------PLAQGLGG 105
Query 118 MPGMP 122
MPG+P
Sbjct 106 MPGLP 110
>gi|225020183|ref|ZP_03709375.1| hypothetical protein CORMATOL_00185 [Corynebacterium matruchotii
ATCC 33806]
gi|224946927|gb|EEG28136.1| hypothetical protein CORMATOL_00185 [Corynebacterium matruchotii
ATCC 33806]
Length=105
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/95 (59%), Positives = 73/95 (77%), Gaps = 0/95 (0%)
Query 6 DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPD 65
DMS +LAQAQ+MQ KL AQ+++ +S V GQAG GLV V ++GSG V V IDPKV+DP+
Sbjct 6 DMSDILAQAQEMQAKLQAAQEEIMSSIVIGQAGNGLVSVSMQGSGTVTSVNIDPKVIDPE 65
Query 66 DIETLQDLIVGAMRDASQQVTKMAQERLGALAGAM 100
D +TLQDL+VGA DA Q+ K+AQ+++G L GAM
Sbjct 66 DPDTLQDLLVGAYNDAHGQLAKIAQDKMGPLQGAM 100
>gi|333992644|ref|YP_004525258.1| hypothetical protein JDM601_4004 [Mycobacterium sp. JDM601]
gi|333488612|gb|AEF38004.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=103
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/94 (62%), Positives = 67/94 (72%), Gaps = 9/94 (9%)
Query 24 AQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDDIETLQDLIVGAMRDASQ 83
AQQ+LA +EV G+AGGGLVKV GSGEV+ V IDPKVVDP DI+TLQDLIVGA+ DAS+
Sbjct 18 AQQELAATEVQGEAGGGLVKVTSNGSGEVLAVQIDPKVVDPADIDTLQDLIVGALADASK 77
Query 84 QVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPG 117
+ +AQERL LAG M A GMPG
Sbjct 78 KAHTLAQERLSPLAGGM---------GNALGMPG 102
>gi|328883422|emb|CCA56661.1| hypothetical protein co-occurring with RecR [Streptomyces venezuelae
ATCC 10712]
Length=111
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/124 (52%), Positives = 78/124 (63%), Gaps = 18/124 (14%)
Query 1 MQPGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTI 57
M PGG +M LL QAQ+MQQ L AQQ+LA +EV GQAGGGLVK V GSGE+ G+ I
Sbjct 1 MIPGGGQPNMQQLLQQAQKMQQDLARAQQELAATEVDGQAGGGLVKATVTGSGELRGLVI 60
Query 58 DPKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPG 117
DPK VDP+D ETL DLIV A++ A+ ++ Q +LG P A GM G
Sbjct 61 DPKAVDPEDTETLADLIVAAVQAANDNAQQLQQAKLG---------------PLAQGMGG 105
Query 118 MPGM 121
MPG+
Sbjct 106 MPGL 109
>gi|345000609|ref|YP_004803463.1| hypothetical protein SACTE_3055 [Streptomyces sp. SirexAA-E]
gi|344316235|gb|AEN10923.1| conserved hypothetical protein [Streptomyces sp. SirexAA-E]
Length=111
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/125 (49%), Positives = 81/125 (65%), Gaps = 18/125 (14%)
Query 1 MQPGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTI 57
M PGG +M LL QAQ+MQQ L AQ++LA +EV GQAGGGLVK V GSG++ G+ I
Sbjct 1 MIPGGGQPNMQQLLQQAQKMQQDLAVAQEELARTEVEGQAGGGLVKATVTGSGDLRGLVI 60
Query 58 DPKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPG 117
DPK VDP+D ETL DL+V A++ A++ ++ Q++LG P A G+ G
Sbjct 61 DPKAVDPEDTETLADLVVAAVQAANENAQQLQQQKLG---------------PLAQGLGG 105
Query 118 MPGMP 122
MPG+P
Sbjct 106 MPGLP 110
>gi|21222035|ref|NP_627814.1| hypothetical protein SCO3619 [Streptomyces coelicolor A3(2)]
gi|289770773|ref|ZP_06530151.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|12644647|sp|Q9XAI3.1|Y3619_STRCO RecName: Full=UPF0133 protein SCO3619
gi|5748804|gb|AAD34031.2|AF151381_1 unknown [Streptomyces coelicolor A3(2)]
gi|5123894|emb|CAB45486.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
gi|289700972|gb|EFD68401.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length=115
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/100 (56%), Positives = 73/100 (73%), Gaps = 3/100 (3%)
Query 1 MQPGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTI 57
M PGG +M LL QAQ+MQQ L +AQ++LA +EV GQAGGGLVK V GSGE+ G+ I
Sbjct 1 MIPGGGQPNMQQLLQQAQKMQQDLAKAQEELARTEVDGQAGGGLVKATVTGSGELRGLVI 60
Query 58 DPKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALA 97
DPK VDP+D ETL DL+V A++ A++ + Q++LG LA
Sbjct 61 DPKAVDPEDTETLADLVVAAVQAANENAQNLQQQKLGPLA 100
>gi|333917900|ref|YP_004491481.1| hypothetical protein AS9A_0221 [Amycolicicoccus subflavus DQS3-9A1]
gi|333480121|gb|AEF38681.1| hypothetical protein AS9A_0221 [Amycolicicoccus subflavus DQS3-9A1]
Length=113
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/99 (62%), Positives = 78/99 (79%), Gaps = 2/99 (2%)
Query 1 MQPGG--DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTID 58
MQP G DM A++ QAQ MQQ+L+EAQ+++A +EV GQAGGGLV + G+GE+I +TID
Sbjct 1 MQPDGAPDMQAIIQQAQAMQQQLMEAQEKIAATEVEGQAGGGLVTAKITGTGEIIDITID 60
Query 59 PKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALA 97
PKVVDPDD+ETLQDL+VGA+RDASQ +A + LG A
Sbjct 61 PKVVDPDDVETLQDLVVGAIRDASQNAQSLAADALGPFA 99
>gi|291006688|ref|ZP_06564661.1| hypothetical protein SeryN2_19376 [Saccharopolyspora erythraea
NRRL 2338]
Length=108
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/88 (57%), Positives = 67/88 (77%), Gaps = 0/88 (0%)
Query 7 MSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDD 66
M ++ QAQ+MQQ+L+ AQQ+LA +EV G AGGGLV VV GSGE+ V IDPK VDPDD
Sbjct 1 MQQIMEQAQKMQQQLMTAQQELAEAEVSGSAGGGLVTAVVSGSGELKSVAIDPKAVDPDD 60
Query 67 IETLQDLIVGAMRDASQQVTKMAQERLG 94
+TL DL+V A+RDA++ ++ QE++G
Sbjct 61 TDTLSDLVVAAVRDANRAAQELQQEKMG 88
>gi|302544191|ref|ZP_07296533.1| conserved hypothetical YaaK [Streptomyces hygroscopicus ATCC
53653]
gi|302461809|gb|EFL24902.1| conserved hypothetical YaaK [Streptomyces himastatinicus ATCC
53653]
Length=111
Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/125 (49%), Positives = 78/125 (63%), Gaps = 18/125 (14%)
Query 1 MQPGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTI 57
M PGG DM LL QAQ+MQQ L AQ++LA + V G +GGGLVK V G+GE+ G+ I
Sbjct 1 MIPGGGQPDMQQLLQQAQKMQQDLAAAQEELARTPVEGSSGGGLVKATVTGAGELQGLVI 60
Query 58 DPKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPG 117
DPK VDP+D ETL DL+V A+RDA+ ++ Q +LG P A G+ G
Sbjct 61 DPKAVDPEDTETLADLVVAAVRDANHVAQELQQTKLG---------------PLAQGLGG 105
Query 118 MPGMP 122
MPG+P
Sbjct 106 MPGLP 110
>gi|302520197|ref|ZP_07272539.1| conserved hypothetical protein [Streptomyces sp. SPB78]
gi|302429092|gb|EFL00908.1| conserved hypothetical protein [Streptomyces sp. SPB78]
Length=114
Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/98 (57%), Positives = 72/98 (74%), Gaps = 3/98 (3%)
Query 3 PGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDP 59
PGG +M LL QAQ+MQQ L AQ++LA +EV GQAGGGLVK V GSGE+ G+ IDP
Sbjct 5 PGGGQPNMQQLLQQAQKMQQDLARAQEELAATEVDGQAGGGLVKATVNGSGELKGLVIDP 64
Query 60 KVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALA 97
K VDP+D ETL DL+V A++ A++ ++ Q++LG LA
Sbjct 65 KAVDPEDTETLADLVVAAVQAANENAQQLQQQKLGPLA 102
>gi|302535334|ref|ZP_07287676.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302444229|gb|EFL16045.1| conserved hypothetical protein [Streptomyces sp. C]
Length=114
Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/122 (49%), Positives = 79/122 (65%), Gaps = 12/122 (9%)
Query 1 MQPGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTI 57
M PGG DM LL QAQ+MQQ L AQ++L+++EV GQAGGGLVK V GSGE+ + I
Sbjct 1 MIPGGGQPDMQQLLQQAQKMQQDLAAAQEELSSAEVEGQAGGGLVKATVTGSGELRALVI 60
Query 58 DPKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPG 117
DPK VDP+D ETL DL+V A++ A++ + Q++LG L + G G+PG
Sbjct 61 DPKAVDPEDTETLADLVVAAVQAANENAQALQQQKLGPLTQVL---------GGGSGIPG 111
Query 118 MP 119
+P
Sbjct 112 LP 113
>gi|254393635|ref|ZP_05008764.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294813447|ref|ZP_06772090.1| DUF149 domain-containing protein [Streptomyces clavuligerus ATCC
27064]
gi|197707251|gb|EDY53063.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294326046|gb|EFG07689.1| DUF149 domain-containing protein [Streptomyces clavuligerus ATCC
27064]
Length=113
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/123 (48%), Positives = 77/123 (63%), Gaps = 18/123 (14%)
Query 3 PGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDP 59
PGG +M LL QAQ+MQQ L AQ++LA +EV GQAGGGLV V GSGE+ + IDP
Sbjct 5 PGGGQPNMQQLLQQAQKMQQDLARAQEELARTEVEGQAGGGLVTATVTGSGELRALVIDP 64
Query 60 KVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPGMP 119
+ VDP+D ETL DL+V A++ A++ ++ Q +LG P A G+ GMP
Sbjct 65 RAVDPEDTETLADLVVAAVQAANENAQQLQQNKLG---------------PLAQGLGGMP 109
Query 120 GMP 122
G+P
Sbjct 110 GLP 112
>gi|291438249|ref|ZP_06577639.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
14672]
gi|291341144|gb|EFE68100.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
14672]
Length=113
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 72/100 (72%), Gaps = 3/100 (3%)
Query 1 MQPGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTI 57
M PGG +M LL QAQ+MQQ L +AQ++LA +EV GQAGGGLVK V GSGE+ + I
Sbjct 1 MIPGGGQPNMQQLLQQAQKMQQDLAKAQEELARTEVDGQAGGGLVKATVTGSGELRALKI 60
Query 58 DPKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALA 97
DPK VDP+D ETL DL+V A++ A++ + Q++LG LA
Sbjct 61 DPKAVDPEDTETLADLVVAAVQAANENAQTLQQQKLGPLA 100
>gi|29831099|ref|NP_825733.1| hypothetical protein SAV_4556 [Streptomyces avermitilis MA-4680]
gi|47117509|sp|Q82EQ8.1|Y4556_STRAW RecName: Full=UPF0133 protein SAV_4556
gi|29608213|dbj|BAC72268.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length=113
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 71/100 (71%), Gaps = 3/100 (3%)
Query 1 MQPGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTI 57
M PGG +M LL QAQ+MQQ L AQ++LA +EV GQAGGGLVK V GSGE+ + I
Sbjct 1 MIPGGGQPNMQQLLQQAQKMQQDLANAQEELARTEVEGQAGGGLVKATVTGSGELRALVI 60
Query 58 DPKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALA 97
DPK VDP+D ETL DL+V A++ A++ + Q++LG LA
Sbjct 61 DPKAVDPEDTETLADLVVAAVQAANENAQALQQQKLGPLA 100
>gi|296141676|ref|YP_003648919.1| hypothetical protein Tpau_4009 [Tsukamurella paurometabola DSM
20162]
gi|296029810|gb|ADG80580.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=96
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/94 (53%), Positives = 69/94 (74%), Gaps = 0/94 (0%)
Query 7 MSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDD 66
M L+AQ MQQ+L+ AQ +L + + GQAGGGLVKV+ G G+V + IDPKVVDP+D
Sbjct 1 MEDLMAQVGAMQQQLMAAQAELQATTIEGQAGGGLVKVIGTGDGQVTSLVIDPKVVDPED 60
Query 67 IETLQDLIVGAMRDASQQVTKMAQERLGALAGAM 100
+ETLQDL++GA+ D S ++AQ+++G LAG +
Sbjct 61 VETLQDLVLGALTDLSNNTAELAQQKMGPLAGGL 94
>gi|318061708|ref|ZP_07980429.1| hypothetical protein SSA3_27468 [Streptomyces sp. SA3_actG]
gi|318081870|ref|ZP_07989179.1| hypothetical protein SSA3_35400 [Streptomyces sp. SA3_actF]
Length=104
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/91 (58%), Positives = 68/91 (75%), Gaps = 0/91 (0%)
Query 7 MSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDD 66
M LL QAQ+MQQ L AQ++LA +EV GQAGGGLVK V GSGE+ G+ IDPK VDP+D
Sbjct 1 MQQLLQQAQKMQQDLARAQEELAATEVDGQAGGGLVKATVNGSGELKGLVIDPKAVDPED 60
Query 67 IETLQDLIVGAMRDASQQVTKMAQERLGALA 97
ETL DL+V A++ A++ ++ Q++LG LA
Sbjct 61 TETLADLVVAAVQAANENAQQLQQQKLGPLA 91
>gi|333026054|ref|ZP_08454118.1| hypothetical protein STTU_3558 [Streptomyces sp. Tu6071]
gi|332745906|gb|EGJ76347.1| hypothetical protein STTU_3558 [Streptomyces sp. Tu6071]
Length=103
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/91 (58%), Positives = 68/91 (75%), Gaps = 0/91 (0%)
Query 7 MSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDD 66
M LL QAQ+MQQ L AQ++LA +EV GQAGGGLVK V GSGE+ G+ IDPK VDP+D
Sbjct 1 MQQLLQQAQKMQQDLARAQEELAATEVDGQAGGGLVKATVNGSGELKGLVIDPKAVDPED 60
Query 67 IETLQDLIVGAMRDASQQVTKMAQERLGALA 97
ETL DL+V A++ A++ ++ Q++LG LA
Sbjct 61 TETLADLVVAAVQAANENAQQLQQQKLGPLA 91
>gi|326441840|ref|ZP_08216574.1| hypothetical protein SclaA2_12289 [Streptomyces clavuligerus
ATCC 27064]
Length=102
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/116 (48%), Positives = 73/116 (63%), Gaps = 15/116 (12%)
Query 7 MSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDD 66
M LL QAQ+MQQ L AQ++LA +EV GQAGGGLV V GSGE+ + IDP+ VDP+D
Sbjct 1 MQQLLQQAQKMQQDLARAQEELARTEVEGQAGGGLVTATVTGSGELRALVIDPRAVDPED 60
Query 67 IETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPGMPGMP 122
ETL DL+V A++ A++ ++ Q +LG P A G+ GMPG+P
Sbjct 61 TETLADLVVAAVQAANENAQQLQQNKLG---------------PLAQGLGGMPGLP 101
>gi|38232883|ref|NP_938650.1| hypothetical protein DIP0260 [Corynebacterium diphtheriae NCTC
13129]
gi|81401992|sp|Q6NJY1.1|Y260_CORDI RecName: Full=UPF0133 protein DIP0260
gi|38199141|emb|CAE48765.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length=106
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/92 (55%), Positives = 71/92 (78%), Gaps = 0/92 (0%)
Query 6 DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPD 65
DMS +LAQAQQMQ KL EAQ+++ + V G AG GLV + ++G+G V VTIDPKVVD D
Sbjct 5 DMSQILAQAQQMQAKLQEAQREILATTVTGTAGNGLVSIDMQGNGMVSSVTIDPKVVDAD 64
Query 66 DIETLQDLIVGAMRDASQQVTKMAQERLGALA 97
D+ETLQDL+VGA +A +++ +A++++G L+
Sbjct 65 DVETLQDLLVGAFAEAHEKLGTLAEQKMGPLS 96
>gi|294630547|ref|ZP_06709107.1| conserved hypothetical protein [Streptomyces sp. e14]
gi|292833880|gb|EFF92229.1| conserved hypothetical protein [Streptomyces sp. e14]
Length=114
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 71/100 (71%), Gaps = 3/100 (3%)
Query 1 MQPGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTI 57
M PGG +M LL QAQ+MQQ L AQ++LA +EV GQAGGGLVK V G+GE+ + I
Sbjct 1 MIPGGGQPNMQQLLQQAQKMQQDLARAQEELAQTEVDGQAGGGLVKATVTGAGELRALKI 60
Query 58 DPKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALA 97
DPK VDP+D ETL DLIV A++ A++ + Q++LG LA
Sbjct 61 DPKAVDPEDTETLADLIVAAVQAANENAQTLQQQKLGPLA 100
>gi|320009949|gb|ADW04799.1| Uncharacterized protein family UPF0133 [Streptomyces flavogriseus
ATCC 33331]
Length=112
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 71/100 (71%), Gaps = 3/100 (3%)
Query 1 MQPGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTI 57
M PGG +M LL QAQ+MQQ L AQ++LA +EV GQAGGGLVK V GSGE+ + I
Sbjct 1 MIPGGGQPNMQQLLQQAQKMQQDLAAAQEELARTEVEGQAGGGLVKATVTGSGELRALVI 60
Query 58 DPKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALA 97
DP VDP+D ETL DL+V A++ A++ ++ Q++LG LA
Sbjct 61 DPSAVDPEDTETLADLVVAAVQAANENAQQLQQQKLGPLA 100
>gi|291303585|ref|YP_003514863.1| hypothetical protein Snas_6147 [Stackebrandtia nassauensis DSM
44728]
gi|290572805|gb|ADD45770.1| conserved hypothetical protein [Stackebrandtia nassauensis DSM
44728]
Length=116
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/115 (48%), Positives = 74/115 (65%), Gaps = 4/115 (3%)
Query 1 MQPGG----DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVT 56
M PGG +M LL QAQQMQQ + AQQ+L SEV +GGGLV V V G+GE G+
Sbjct 1 MFPGGEGAPNMQELLKQAQQMQQDYVAAQQELVESEVSASSGGGLVTVTVTGAGEFRGIK 60
Query 57 IDPKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPG 111
IDPK VDP+D+ETL+DL+ A+ A ++ K+A+ +LG + A++ A PG
Sbjct 61 IDPKAVDPEDVETLEDLVGAAVLAAGEEAKKLAEAKLGPVTQALQAMGGGGALPG 115
>gi|336176668|ref|YP_004582043.1| hypothetical protein FsymDg_0592 [Frankia symbiont of Datisca
glomerata]
gi|334857648|gb|AEH08122.1| UPF0133 protein ybaB [Frankia symbiont of Datisca glomerata]
Length=153
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/91 (53%), Positives = 64/91 (71%), Gaps = 0/91 (0%)
Query 10 LLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDDIET 69
LL QAQ+MQ +LL AQQ+LA++ V G AGGGLVK V G GE++ + IDP VDP D ET
Sbjct 17 LLQQAQRMQAELLTAQQELADARVDGTAGGGLVKATVTGGGELVDLVIDPAAVDPSDTET 76
Query 70 LQDLIVGAMRDASQQVTKMAQERLGALAGAM 100
L DL++ A+RDA+ + A ER+G + G +
Sbjct 77 LADLVLAAVRDAADNARRRASERMGQVTGGL 107
>gi|329939342|ref|ZP_08288678.1| hypothetical protein SGM_4170 [Streptomyces griseoaurantiacus
M045]
gi|329301571|gb|EGG45465.1| hypothetical protein SGM_4170 [Streptomyces griseoaurantiacus
M045]
Length=113
Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 71/100 (71%), Gaps = 3/100 (3%)
Query 1 MQPGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTI 57
M PGG +M LL QAQ+MQQ L AQ++LA +EV GQ+GGGLVK V G+GE+ + I
Sbjct 1 MIPGGGQPNMQQLLQQAQKMQQDLARAQEELARTEVDGQSGGGLVKATVTGAGELRALKI 60
Query 58 DPKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALA 97
DPK VDP+D ETL DL+V A++ A++ + Q++LG LA
Sbjct 61 DPKAVDPEDTETLADLVVAAVQAANENAQNLQQQKLGPLA 100
>gi|54022258|ref|YP_116500.1| hypothetical protein nfa2940 [Nocardia farcinica IFM 10152]
gi|81376300|sp|Q5Z355.1|Y294_NOCFA RecName: Full=UPF0133 protein NFA_2940
gi|54013766|dbj|BAD55136.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=110
Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/123 (54%), Positives = 85/123 (70%), Gaps = 15/123 (12%)
Query 1 MQPGG--DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTID 58
MQPGG DM LLAQAQQMQ+ +++AQ ++A +EV GQAGGGLVK +K +GEV +TID
Sbjct 1 MQPGGQFDMQQLLAQAQQMQEAVMQAQAEIAATEVEGQAGGGLVKATIKATGEVQALTID 60
Query 59 PKVVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALAGAMRPPAPPAAPPGAPGMPGM 118
PKVVDP+D+E LQDL++GA+ DA + ++A ERLG LA G MPG+
Sbjct 61 PKVVDPEDVEGLQDLVIGAINDAMARAQQLAAERLGPLA-------------GGGSMPGL 107
Query 119 PGM 121
PG
Sbjct 108 PGF 110
>gi|295837977|ref|ZP_06824910.1| conserved hypothetical protein [Streptomyces sp. SPB74]
gi|197699472|gb|EDY46405.1| conserved hypothetical protein [Streptomyces sp. SPB74]
Length=113
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/95 (55%), Positives = 70/95 (74%), Gaps = 3/95 (3%)
Query 1 MQPGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTI 57
M PGG +M LL QAQ+MQQ L +AQ++LA +EV GQAGGGLVK V GSGE+ G+ I
Sbjct 1 MIPGGGQPNMQQLLQQAQKMQQDLAKAQEELAATEVDGQAGGGLVKATVNGSGELRGLVI 60
Query 58 DPKVVDPDDIETLQDLIVGAMRDASQQVTKMAQER 92
DPK VDP+D ETL DL+V A++ A++ ++ Q++
Sbjct 61 DPKAVDPEDTETLADLVVAAVQAANENAQQLQQQK 95
>gi|297201257|ref|ZP_06918654.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197712881|gb|EDY56915.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=115
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/95 (54%), Positives = 67/95 (71%), Gaps = 3/95 (3%)
Query 1 MQPGG---DMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTI 57
M PGG +M LL QAQ+MQQ L AQ++LA +EV GQAGGGLV+ V G+GE+ + I
Sbjct 1 MNPGGGQPNMQQLLQQAQKMQQDLANAQEELARTEVDGQAGGGLVRATVTGAGELRALKI 60
Query 58 DPKVVDPDDIETLQDLIVGAMRDASQQVTKMAQER 92
DPK VDPDD ETL DLIV A++ A++ + Q++
Sbjct 61 DPKAVDPDDTETLADLIVAAVQAATENAQTLQQQK 95
>gi|111220098|ref|YP_710892.1| hypothetical protein FRAAL0611 [Frankia alni ACN14a]
gi|111147630|emb|CAJ59285.1| conserved hypothetical protein [Frankia alni ACN14a]
Length=169
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/86 (53%), Positives = 64/86 (75%), Gaps = 0/86 (0%)
Query 10 LLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPKVVDPDDIET 69
+L QAQ+MQ LL AQ++LA++ V G AGGGLV+ V G GE++ +TI P+ VDP+D ET
Sbjct 29 ILQQAQKMQAALLSAQEELASARVDGTAGGGLVRATVNGGGELVDLTISPEAVDPEDTET 88
Query 70 LQDLIVGAMRDASQQVTKMAQERLGA 95
L DLI+ A+RDA+ ++A ER+G+
Sbjct 89 LADLILAAVRDATTNAHRLAAERMGS 114
>gi|319950864|ref|ZP_08024747.1| hypothetical protein ES5_14688 [Dietzia cinnamea P4]
gi|319435477|gb|EFV90714.1| hypothetical protein ES5_14688 [Dietzia cinnamea P4]
Length=111
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/97 (69%), Positives = 80/97 (83%), Gaps = 0/97 (0%)
Query 1 MQPGGDMSALLAQAQQMQQKLLEAQQQLANSEVHGQAGGGLVKVVVKGSGEVIGVTIDPK 60
MQPG DM+ALL QAQQMQ +L EAQQ++A S V GQAGGGLV V ++G+GEV GVTIDPK
Sbjct 1 MQPGPDMNALLQQAQQMQAQLAEAQQEIAASTVDGQAGGGLVTVSMRGTGEVTGVTIDPK 60
Query 61 VVDPDDIETLQDLIVGAMRDASQQVTKMAQERLGALA 97
VVDP+D+ETLQDL+VGA DA +V ++A+ RLG LA
Sbjct 61 VVDPEDVETLQDLLVGAFGDAHTKVQELAESRLGPLA 97
Lambda K H
0.312 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130457467840
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40