BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3721c Length=578 Score E Sequences producing significant alignments: (Bits) Value gi|15610857|ref|NP_218238.1| DNA polymerase III subunits gamma a... 1150 0.0 gi|306778610|ref|ZP_07416947.1| DNA polymerase III gamma/tau sub... 1149 0.0 gi|340628695|ref|YP_004747147.1| DNA polymerase III subunit gamm... 1106 0.0 gi|15828258|ref|NP_302521.1| DNA polymerase III subunits gamma a... 898 0.0 gi|336460783|gb|EGO39669.1| DNA polymerase III, subunit gamma/ta... 895 0.0 gi|254773386|ref|ZP_05214902.1| DNA polymerase III subunits gamm... 893 0.0 gi|41406420|ref|NP_959256.1| DNA polymerase III subunits gamma a... 893 0.0 gi|118462751|ref|YP_879667.1| DNA polymerase III subunits gamma/... 892 0.0 gi|254818503|ref|ZP_05223504.1| DNA polymerase III subunits gamm... 888 0.0 gi|342859925|ref|ZP_08716577.1| DNA polymerase III subunits gamm... 881 0.0 gi|296166815|ref|ZP_06849233.1| DNA polymerase III, gamma/tau su... 875 0.0 gi|240171031|ref|ZP_04749690.1| DNA polymerase III subunits gamm... 875 0.0 gi|183985209|ref|YP_001853500.1| DNA polymerase III (subunit gam... 869 0.0 gi|118619468|ref|YP_907800.1| DNA polymerase III subunits gamma ... 865 0.0 gi|145221873|ref|YP_001132551.1| DNA polymerase III subunits gam... 840 0.0 gi|120406477|ref|YP_956306.1| DNA polymerase III subunits gamma ... 821 0.0 gi|289571965|ref|ZP_06452192.1| DNA polymerase III gamma/tau sub... 733 0.0 gi|315446392|ref|YP_004079271.1| DNA polymerase III subunit gamm... 683 0.0 gi|333992650|ref|YP_004525264.1| DNA polymerase III subunits gam... 675 0.0 gi|118469964|ref|YP_890504.1| DNA polymerase III subunits gamma ... 672 0.0 gi|169627413|ref|YP_001701062.1| DNA polymerase III subunit gamm... 668 0.0 gi|108801872|ref|YP_642069.1| DNA polymerase III subunits gamma ... 659 0.0 gi|54022248|ref|YP_116490.1| DNA polymerase III subunits gamma a... 654 0.0 gi|126437840|ref|YP_001073531.1| DNA polymerase III subunits gam... 653 0.0 gi|226363536|ref|YP_002781318.1| DNA polymerase III subunits gam... 643 0.0 gi|312137857|ref|YP_004005193.1| DNA polymerase III gamma subuni... 643 0.0 gi|111021176|ref|YP_704148.1| DNA polymerase III subunits gamma ... 640 0.0 gi|343926396|ref|ZP_08765901.1| DNA polymerase III gamma/tau sub... 622 6e-176 gi|262200446|ref|YP_003271654.1| DNA polymerase III subunits gam... 617 1e-174 gi|325676041|ref|ZP_08155723.1| DNA polymerase III, gamma/tau su... 613 2e-173 gi|257057604|ref|YP_003135436.1| DNA polymerase III, subunit gam... 610 2e-172 gi|229492523|ref|ZP_04386326.1| DNA polymerase III subunit gamma... 610 3e-172 gi|296141683|ref|YP_003648926.1| DNA polymerase III subunits gam... 608 1e-171 gi|226303865|ref|YP_002763823.1| DNA polymerase III gamma/tau su... 607 1e-171 gi|333917896|ref|YP_004491477.1| DNA polymerase III subunits gam... 604 1e-170 gi|326383531|ref|ZP_08205217.1| DNA polymerase III subunits gamm... 591 1e-166 gi|319950448|ref|ZP_08024362.1| DNA polymerase III subunits gamm... 591 1e-166 gi|258650897|ref|YP_003200053.1| DNA polymerase III subunits gam... 587 2e-165 gi|68537107|ref|YP_251812.1| DNA polymerase III subunits gamma a... 587 3e-165 gi|334564444|ref|ZP_08517435.1| DNA polymerase III subunits gamm... 585 1e-164 gi|340795478|ref|YP_004760941.1| DNA polymerase III gamma and ta... 583 2e-164 gi|256374358|ref|YP_003098018.1| DNA polymerase III subunits gam... 582 7e-164 gi|172041592|ref|YP_001801306.1| DNA polymerase III subunits gam... 582 9e-164 gi|237784776|ref|YP_002905481.1| DNA polymerase III subunits gam... 575 8e-162 gi|134096866|ref|YP_001102527.1| putative DNA polymerase III gam... 572 4e-161 gi|300857562|ref|YP_003782545.1| DNA polymerase III subunit gamm... 572 8e-161 gi|291005087|ref|ZP_06563060.1| putative DNA polymerase III gamm... 571 1e-160 gi|331694235|ref|YP_004330474.1| DNA polymerase III subunits gam... 568 1e-159 gi|324998990|ref|ZP_08120102.1| DNA polymerase III subunits gamm... 567 2e-159 gi|337289808|ref|YP_004628829.1| DNA polymerase III subunit gamm... 565 8e-159 >gi|15610857|ref|NP_218238.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis H37Rv] gi|15843342|ref|NP_338379.1| DNA polymerase III subunits gamma and tau [Mycobacterium tuberculosis CDC1551] gi|31794893|ref|NP_857386.1| DNA polymerase III subunits gamma and tau [Mycobacterium bovis AF2122/97] 68 more sequence titles Length=578 Score = 1150 bits (2974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 577/578 (99%), Positives = 578/578 (100%), Gaps = 0/578 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR Sbjct 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR Sbjct 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL Sbjct 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD Sbjct 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL Sbjct 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPA 420 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPA Sbjct 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPA 420 Query 421 SSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQ 480 SSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQ Sbjct 421 SSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQ 480 Query 481 RNADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEE 540 RNADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEE Sbjct 481 RNADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEE 540 Query 541 EHMLAEAGRGDPSPRRDPEEVALELLQNELGARRIDNA 578 EHMLAEAGRGDPSPRRDPEEVALELLQNELGARRIDNA Sbjct 541 EHMLAEAGRGDPSPRRDPEEVALELLQNELGARRIDNA 578 >gi|306778610|ref|ZP_07416947.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu002] gi|306790999|ref|ZP_07429321.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu004] gi|306791318|ref|ZP_07429620.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu005] gi|308328340|gb|EFP17191.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu002] gi|308332586|gb|EFP21437.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu004] gi|308340077|gb|EFP28928.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis SUMu005] Length=578 Score = 1149 bits (2972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 576/578 (99%), Positives = 578/578 (100%), Gaps = 0/578 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR Sbjct 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR Sbjct 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL Sbjct 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD Sbjct 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL Sbjct 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPA 420 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPA Sbjct 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPA 420 Query 421 SSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQ 480 SSEPT+AAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQ Sbjct 421 SSEPTMAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQ 480 Query 481 RNADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEE 540 RNADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEE Sbjct 481 RNADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEE 540 Query 541 EHMLAEAGRGDPSPRRDPEEVALELLQNELGARRIDNA 578 EHMLAEAGRGDPSPRRDPEEVALELLQNELGARRIDNA Sbjct 541 EHMLAEAGRGDPSPRRDPEEVALELLQNELGARRIDNA 578 >gi|340628695|ref|YP_004747147.1| DNA polymerase III subunit gamma/tau DNAZ/X [Mycobacterium canettii CIPT 140010059] gi|340006885|emb|CCC46074.1| DNA polymerase III (subunit gamma/TAU) DNAZ/X [Mycobacterium canettii CIPT 140010059] Length=579 Score = 1106 bits (2861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 575/579 (99%), Positives = 576/579 (99%), Gaps = 1/579 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR Sbjct 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR Sbjct 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL Sbjct 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD Sbjct 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AASRGVVDAPEDALDRMREQAARIG ATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL Sbjct 301 AASRGVVDAPEDALDRMREQAARIGPATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPA 420 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPV APTPA Sbjct 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVPAPTPA 420 Query 421 SSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQ 480 SSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQ Sbjct 421 SSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQ 480 Query 481 RNADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEE 540 RNADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEE Sbjct 481 RNADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEE 540 Query 541 EHMLAEAGR-GDPSPRRDPEEVALELLQNELGARRIDNA 578 EHMLAEAGR GDPSPRRDPEEVALELLQNELGARRIDNA Sbjct 541 EHMLAEAGRGGDPSPRRDPEEVALELLQNELGARRIDNA 579 >gi|15828258|ref|NP_302521.1| DNA polymerase III subunits gamma and tau [Mycobacterium leprae TN] gi|221230735|ref|YP_002504151.1| DNA polymerase III subunits gamma and tau [Mycobacterium leprae Br4923] gi|3150103|emb|CAA19155.1| DNA polymerase III subunits gamma and tau [Mycobacterium leprae] gi|13093951|emb|CAC31851.1| DNA polymerase III, subunit [gamma/tau] [Mycobacterium leprae] gi|219933842|emb|CAR72433.1| DNA polymerase III, subunit [gamma/tau] [Mycobacterium leprae Br4923] Length=611 Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/603 (78%), Positives = 497/603 (83%), Gaps = 26/603 (4%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 + LYRKYRPA+FAEVVGQEHVT PLS+AL+AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MTLYRKYRPAAFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 CAQG TA PCGVCESC+SLAPNAPG IDVVELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 61 CAQGTTATPCGVCESCLSLAPNAPGHIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTTAGFNALLKIVEEPP+HLIFIFATTEPEKVLPTIRSRTHHYPFRLL PR Sbjct 121 VFIVDEAHMVTTAGFNALLKIVEEPPDHLIFIFATTEPEKVLPTIRSRTHHYPFRLLSPR 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMRAL+ RIC QEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL+AGA HVTY RAL L Sbjct 181 TMRALVGRICAQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLVAGAEGEHVTYQRALKL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG TDV LIDDAVDAL A DAAALFGA+ESVID GHDPRRFATDLLERFRDLIVLQ+VPD Sbjct 241 LGATDVGLIDDAVDALGAHDAAALFGAVESVIDAGHDPRRFATDLLERFRDLIVLQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AA+RGVVDA ED LDRMREQA RIG ATLTRYAEVV +GLGEMRGATAPRLLLEVVCARL Sbjct 301 AAARGVVDASEDVLDRMREQAVRIGPATLTRYAEVVHSGLGEMRGATAPRLLLEVVCARL 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLA---- 416 LLPSA+DAESALLQRVERIETRL+MSIPA +A +A AE QP+ +P LA Sbjct 361 LLPSATDAESALLQRVERIETRLNMSIPAARAAYPLQSAPAEKAAQPSLPHQPFLASPDS 420 Query 417 -------------------PTPASSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVR 457 PTP P AAVR+MW TVR+KVR RSRTTEVMLAGATVR Sbjct 421 QPAPDAQSSKLATPQAAAEPTPGMGAPNAAAVRTMWSTVREKVRQRSRTTEVMLAGATVR 480 Query 458 ALEDNTLVLTHESAPLARRLSEQRNADVLAEALKDALGVNWRVRCETG--EPAAAASPVG 515 A+EDNTL+LTH SAPLA+RLSEQ N DV+AEALKDALGVNWRVRCE G PA A P Sbjct 481 AVEDNTLILTHGSAPLAKRLSEQHNVDVIAEALKDALGVNWRVRCEAGVPVPAVGALPAC 540 Query 516 GGANVATAKAVNPAPTANSTQRDEEEHMLAEAGRGDPS-PRRDPEEVALELLQNELGARR 574 G + P S Q+ E+E MLAE GR D S PR D EEVALELLQNELGARR Sbjct 541 EGMVALPTQEKVPVLDVASAQQYEDEGMLAEPGRRDLSAPRPDLEEVALELLQNELGARR 600 Query 575 IDN 577 ID Sbjct 601 IDK 603 >gi|336460783|gb|EGO39669.1| DNA polymerase III, subunit gamma/tau [Mycobacterium avium subsp. paratuberculosis S397] Length=612 Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/624 (78%), Positives = 510/624 (82%), Gaps = 60/624 (9%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PLS+AL+AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPTA PCGVC+SC++LAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 61 CVQGPTATPCGVCDSCLALAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPP+ Sbjct 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPK 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMRAL+ RICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL+AGA HVTY RALGL Sbjct 181 TMRALIGRICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLVAGAEGGHVTYQRALGL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG TD+ALIDDAVDALAA DAAALFGA+ESVID GHDPRRFATDLLERFRDLI+LQ+VPD Sbjct 241 LGATDLALIDDAVDALAAGDAAALFGAVESVIDAGHDPRRFATDLLERFRDLILLQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AASRGVVDAPED L+RMR+QA RIG ATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL Sbjct 301 AASRGVVDAPEDVLERMRDQATRIGPATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPA 420 LLPSASD ESALLQRVERIETRLDMSIPA + AEP QP R RP AP PA Sbjct 361 LLPSASDTESALLQRVERIETRLDMSIPA-------GSTPAEPVEQPVRFTRPSAAPKPA 413 Query 421 SS-----------------------------------------------EPTVAAVRSMW 433 S E AAVRSMW Sbjct 414 SKPEPAAAKPEHEPEPQPEARPEPRAKPTPEPKPAPEPARASETPSAPGELNAAAVRSMW 473 Query 434 PTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNADVLAEALKDA 493 TVRDKVR RSRTTEVMLAGATVRA+EDNTLVLTHESAPLA+RL EQRNADV+AEALKDA Sbjct 474 STVRDKVRQRSRTTEVMLAGATVRAIEDNTLVLTHESAPLAKRLCEQRNADVIAEALKDA 533 Query 494 LGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEEEHMLAEAGRGDPS 553 LGVNWRVRCE G PA+A A K P P +S +RDEEEHMLAEA R +P+ Sbjct 534 LGVNWRVRCEAGSPASAT------AGPPHPKPEQPVPEPDSARRDEEEHMLAEAVRDEPA 587 Query 554 PRRDPEEVALELLQNELGARRIDN 577 RRDPEE ALELLQNELGARRID Sbjct 588 ARRDPEEAALELLQNELGARRIDG 611 >gi|254773386|ref|ZP_05214902.1| DNA polymerase III subunits gamma and tau [Mycobacterium avium subsp. avium ATCC 25291] Length=612 Score = 893 bits (2308), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/625 (78%), Positives = 510/625 (82%), Gaps = 60/625 (9%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PLS+AL+AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPTA PCGVC+SC++LAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 61 CVQGPTATPCGVCDSCLALAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPP+ Sbjct 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPK 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMRAL+ RICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL+AGA HVTY RALGL Sbjct 181 TMRALIGRICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLVAGAEGGHVTYQRALGL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG TD+ALIDDAVDALAA DAAALFGA+ESVID GHDPRRFATDLLERFRDLI+LQ+VPD Sbjct 241 LGATDLALIDDAVDALAAGDAAALFGAVESVIDAGHDPRRFATDLLERFRDLILLQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AASRGVVDAPED L+RMR+QA RIG ATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL Sbjct 301 AASRGVVDAPEDVLERMRDQATRIGPATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPA 420 LLPSASD E+ALLQRVERIETRLDMSIPA + AEP QP R RP AP PA Sbjct 361 LLPSASDTETALLQRVERIETRLDMSIPA-------GSTPAEPVEQPVRFTRPSAAPKPA 413 Query 421 SS-----------------------------------------------EPTVAAVRSMW 433 S E AAVRSMW Sbjct 414 SKPEPAAAKPEHEPEPQPEARPEPRAEPTPEPKPAPEPARASETPSAPGELNAAAVRSMW 473 Query 434 PTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNADVLAEALKDA 493 TVRDKVR RSRTTEVMLAGATVRA+EDNTLVLTHESAPLA+RL EQRNADV+AEALKDA Sbjct 474 STVRDKVRQRSRTTEVMLAGATVRAIEDNTLVLTHESAPLAKRLCEQRNADVIAEALKDA 533 Query 494 LGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEEEHMLAEAGRGDPS 553 LGVNWRVRCE G PA A A K P P +S +RDEEEHMLAEA R +P+ Sbjct 534 LGVNWRVRCEAGSPAPAT------AGPPHPKPEQPVPEPDSARRDEEEHMLAEAVRDEPA 587 Query 554 PRRDPEEVALELLQNELGARRIDNA 578 RRDPEE ALELLQNELGARRID + Sbjct 588 ARRDPEEAALELLQNELGARRIDGS 612 >gi|41406420|ref|NP_959256.1| DNA polymerase III subunits gamma and tau [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394769|gb|AAS02639.1| DnaZX [Mycobacterium avium subsp. paratuberculosis K-10] Length=612 Score = 893 bits (2307), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/624 (78%), Positives = 510/624 (82%), Gaps = 60/624 (9%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PLS+AL+AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPTA PCGVC+SC++LAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAP QSR+R Sbjct 61 CVQGPTATPCGVCDSCLALAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRHR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPP+ Sbjct 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPK 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMRAL+ RICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL+AGA HVTY RALGL Sbjct 181 TMRALIGRICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLVAGAEGGHVTYQRALGL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG TD+ALIDDAVDALAA DAAALFGA+ESVID GHDPRRFATDLLERFRDLI+LQ+VPD Sbjct 241 LGATDLALIDDAVDALAAGDAAALFGAVESVIDAGHDPRRFATDLLERFRDLILLQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AASRGVVDAPED L+RMR+QA RIG ATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL Sbjct 301 AASRGVVDAPEDVLERMRDQATRIGPATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPA 420 LLPSASD ESALLQRVERIETRLDMSIPA + AEP QP R RP AP PA Sbjct 361 LLPSASDTESALLQRVERIETRLDMSIPA-------GSTPAEPVEQPVRFTRPSAAPKPA 413 Query 421 SS-----------------------------------------------EPTVAAVRSMW 433 S E AAVRSMW Sbjct 414 SKPEPAAAKPEHEPEPQPEARPEPRAKPTPEPKPAPEPARASETPSAPGELNAAAVRSMW 473 Query 434 PTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNADVLAEALKDA 493 TVRDKVR RSRTTEVMLAGATVRA+EDNTLVLTHESAPLA+RL EQRNADV+AEALKDA Sbjct 474 STVRDKVRQRSRTTEVMLAGATVRAIEDNTLVLTHESAPLAKRLCEQRNADVIAEALKDA 533 Query 494 LGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEEEHMLAEAGRGDPS 553 LGVNWRVRCE G PA+A A K P P +S +RDEEEHMLAEA R +P+ Sbjct 534 LGVNWRVRCEAGSPASAT------AGPPHPKPEQPVPEPDSARRDEEEHMLAEAVRDEPA 587 Query 554 PRRDPEEVALELLQNELGARRIDN 577 RRDPEE ALELLQNELGARRID Sbjct 588 ARRDPEEAALELLQNELGARRIDG 611 >gi|118462751|ref|YP_879667.1| DNA polymerase III subunits gamma/tau [Mycobacterium avium 104] gi|48928138|gb|AAT47747.1| probable DNA polymerase III gamma [Mycobacterium avium] gi|118164038|gb|ABK64935.1| DNA polymerase III gamma/tau subunit [Mycobacterium avium 104] Length=608 Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/616 (79%), Positives = 518/616 (85%), Gaps = 46/616 (7%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PLS+AL+AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPTA PCGVC+SC++LAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 61 CVQGPTATPCGVCDSCLALAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPP+ Sbjct 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPK 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMRAL+ RICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL+AGA HVTY RALGL Sbjct 181 TMRALIGRICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLVAGAEGGHVTYQRALGL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG TD+ALIDDAVDALAA DAAALFGA+ESVID GHDPRRFATDLLERFRDLI+LQ+VPD Sbjct 241 LGATDLALIDDAVDALAAGDAAALFGAVESVIDAGHDPRRFATDLLERFRDLILLQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AASRGVVDAPED L+RMR+QA RIG ATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL Sbjct 301 AASRGVVDAPEDVLERMRDQATRIGPATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPA----------------PQAVPRPSA----AA 400 LLPSASD E+ALLQRVERIETRLDMSIPA P A P+P++ AA Sbjct 361 LLPSASDTEAALLQRVERIETRLDMSIPAGSTPAEPVEQPVRFTRPSAAPKPASKPEPAA 420 Query 401 AEPKHQPAREPRPV-----------------LAPTP-ASSEPTVAAVRSMWPTVRDKVRL 442 A+ +H+P EP+P + TP A E AAVRSMW TVRDKVR Sbjct 421 AKSEHEP--EPQPEARPEPRPEPTPEPKPARASETPSAPGELNAAAVRSMWSTVRDKVRQ 478 Query 443 RSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNADVLAEALKDALGVNWRVRC 502 RSRTTEVMLAGATVRA+EDNTLVLTHESAPLA+RL EQRNADV+AEALKDALGVNWRVRC Sbjct 479 RSRTTEVMLAGATVRAIEDNTLVLTHESAPLAKRLCEQRNADVIAEALKDALGVNWRVRC 538 Query 503 ETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEEEHMLAEAGRGDPSPRRDPEEVA 562 E G PA A A K P +S +RDEEEHMLAEA R +P+ RRDPEE A Sbjct 539 EAGSPAPAT------AGPPHPKPEQPVHEPDSARRDEEEHMLAEAVRDEPAARRDPEEAA 592 Query 563 LELLQNELGARRIDNA 578 LELLQNELGARRID + Sbjct 593 LELLQNELGARRIDGS 608 >gi|254818503|ref|ZP_05223504.1| DNA polymerase III subunits gamma and tau [Mycobacterium intracellulare ATCC 13950] Length=615 Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/625 (78%), Positives = 512/625 (82%), Gaps = 57/625 (9%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PLS+AL+AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 CAQGPTA PCGVC+SC +LAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 61 CAQGPTATPCGVCDSCQALAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPP+ Sbjct 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPK 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMRAL+ RICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL+AGA HVTY RALGL Sbjct 181 TMRALIGRICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLVAGAEGAHVTYQRALGL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG TD+ALIDDAVDALAA DAAALFGA+ESVID GHDPRRFATDLLERFRDLI+LQ+VPD Sbjct 241 LGATDMALIDDAVDALAAADAAALFGAVESVIDAGHDPRRFATDLLERFRDLILLQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AA+RGVVD PED L+RMR+Q+ R+G ATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL Sbjct 301 AAARGVVDGPEDVLERMRDQSTRLGTATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVP-RPSAAAAEPKHQPAREPRP------ 413 LLPSASD E+ALLQRVERIETRLDMSIP +A RP AEP +P R RP Sbjct 361 LLPSASDTEAALLQRVERIETRLDMSIPGSEATAGRP----AEPADRPVRFTRPSAAAPK 416 Query 414 ---------------------------------------VLAPTPASSEPTVAAVRSMWP 434 + A E AAVRSMW Sbjct 417 PEPKPEPKPEPKPEPKPEPKAEPAPAPEPPPAPAPAPSPAAETSSAPGELNAAAVRSMWS 476 Query 435 TVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNADVLAEALKDAL 494 TVRDKVR RSRTTEVMLAGATVRA+EDNTLVL+HESAPLA+RL EQRNADV+AEALKDAL Sbjct 477 TVRDKVRQRSRTTEVMLAGATVRAIEDNTLVLSHESAPLAKRLCEQRNADVIAEALKDAL 536 Query 495 GVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEEEHMLAEAGRGDPS- 553 GVNWRVRCE G PA AA AN T + PAP +S +R EEEH+LAEA R PS Sbjct 537 GVNWRVRCEAGTPAQAA------ANPLTPQPEEPAPEPDSARRAEEEHLLAEAVRDQPSG 590 Query 554 PRRDPEEVALELLQNELGARRIDNA 578 PRRDPEEVALELLQNELGARRIDN Sbjct 591 PRRDPEEVALELLQNELGARRIDNG 615 >gi|342859925|ref|ZP_08716577.1| DNA polymerase III subunits gamma and tau [Mycobacterium colombiense CECT 3035] gi|342132303|gb|EGT85532.1| DNA polymerase III subunits gamma and tau [Mycobacterium colombiense CECT 3035] Length=626 Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/627 (78%), Positives = 520/627 (83%), Gaps = 50/627 (7%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PLS+AL+AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 CAQGPTA PCGVC+SC +LAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 61 CAQGPTATPCGVCDSCQALAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPP+ Sbjct 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPK 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMR+L+ RICEQEGV VDDAVYPLVIRAGGGSPRDTLSVLDQL+AGA HVTY RALGL Sbjct 181 TMRSLIGRICEQEGVAVDDAVYPLVIRAGGGSPRDTLSVLDQLVAGAEGAHVTYQRALGL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG TD+ALIDDAVDALAA DAAALFGA+ESVID GHDPRRFATDLLERFRDLI+LQ+VPD Sbjct 241 LGATDLALIDDAVDALAAADAAALFGAVESVIDAGHDPRRFATDLLERFRDLILLQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AASRGVVDAPED L+RMREQA RIG ATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL Sbjct 301 AASRGVVDAPEDVLERMREQATRIGPATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPAPQA--------------------VPRPSAAA 400 LLPSASD+ESALLQRVERIETRLDMSIP + RPSAAA Sbjct 361 LLPSASDSESALLQRVERIETRLDMSIPGSEGPAPARPRGAPAAAEPEPPVRFTRPSAAA 420 Query 401 AEPKHQPAREPRPVLAPTPAS--------------------------SEPTVAAVRSMWP 434 A K +P +P+P A PA E AAVRSMWP Sbjct 421 AA-KPEPTPDPKPEPAAAPAPEPPAPPPAAPEPAAAPAPAAESASVPGELNTAAVRSMWP 479 Query 435 TVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNADVLAEALKDAL 494 TVR+KVR RSRTTEVMLAGATVRA++ NTLVL+HESAPLA+RL EQRNADV+AEALKDAL Sbjct 480 TVREKVRQRSRTTEVMLAGATVRAIDGNTLVLSHESAPLAKRLCEQRNADVIAEALKDAL 539 Query 495 GVNWRVRCE--TGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEEEHMLAEAGRGDP 552 GVNWRVRCE PAA P GGGA A V PAP ++ +RDEEEHMLAEA R +P Sbjct 540 GVNWRVRCEAGAPAPAAPPPPAGGGAGPAATNVVEPAPDVDTARRDEEEHMLAEAVRDEP 599 Query 553 S-PRRDPEEVALELLQNELGARRIDNA 578 S PRRDPEEVALELLQ+ELGARRIDN Sbjct 600 SAPRRDPEEVALELLQSELGARRIDNG 626 >gi|296166815|ref|ZP_06849233.1| DNA polymerase III, gamma/tau subunit DnaX [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897831|gb|EFG77419.1| DNA polymerase III, gamma/tau subunit DnaX [Mycobacterium parascrofulaceum ATCC BAA-614] Length=625 Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/618 (79%), Positives = 508/618 (83%), Gaps = 48/618 (7%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 VALYRKYRPA+FAEVVGQEHVT PLS+AL+AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 16 VALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLN 75 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPTANPCGVCESC +LAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 76 CVQGPTANPCGVCESCTALAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYR 135 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFI+DEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPP+ Sbjct 136 VFIIDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPK 195 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGA----ADTHVTYTR 236 TMRAL+ RICEQEGVVVDDAV+PLVIRAGGGSPRDTLSVLDQLLAG+ HVTY R Sbjct 196 TMRALIGRICEQEGVVVDDAVFPLVIRAGGGSPRDTLSVLDQLLAGSETGPGGPHVTYPR 255 Query 237 ALGLLGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQ 296 ALGLLG TDVALIDDAVDALAA DAAALFGA+ESVID GHDPRRFATDLLERFRDLIVLQ Sbjct 256 ALGLLGATDVALIDDAVDALAAADAAALFGAVESVIDAGHDPRRFATDLLERFRDLIVLQ 315 Query 297 SVPDAASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVV 356 +VPDA SRGVVDAPED LDRMR+QAAR+G ATLTRYAEVVQAGLGEMRGATAPRLLLEVV Sbjct 316 AVPDAVSRGVVDAPEDVLDRMRDQAARLGPATLTRYAEVVQAGLGEMRGATAPRLLLEVV 375 Query 357 CARLLLPSASDAESALLQRVERIETRLDMSIPAPQAVP----------RPSAAAAEPKHQ 406 C+RLLLPSASD ESALLQRVERIETRLDMSIPA +A RP PK Sbjct 376 CSRLLLPSASDTESALLQRVERIETRLDMSIPAAEAAAAHPPAVAAPVRPRKEQTPPKEP 435 Query 407 -PAREPRPVLAP------------------------TPASSEPTVAAVRSMWPTVRDKVR 441 P R PV P A E AAVRSMWPTVRDKVR Sbjct 436 VPPRSAPPVPKPEAVPEPVRVPPPPEPAPAPVPEPAPAAPGELNAAAVRSMWPTVRDKVR 495 Query 442 LRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNADVLAEALKDALGVNWRVR 501 RSRTTEVMLAGATVRA+E+NTLVLTH SAPLA+RL EQRNADV+AEALKDALGVNWRVR Sbjct 496 QRSRTTEVMLAGATVRAIEENTLVLTHSSAPLAKRLCEQRNADVIAEALKDALGVNWRVR 555 Query 502 CETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEEEHMLAEAGRGDPS-PRRDPEE 560 CE G A + A P P ++ QR EEEHMLAEAGR + S PRRDPEE Sbjct 556 CEVGAAAPVEA--------APPAPRAPEPARDAAQRAEEEHMLAEAGRTESSEPRRDPEE 607 Query 561 VALELLQNELGARRIDNA 578 VALELLQNELGARRIDNA Sbjct 608 VALELLQNELGARRIDNA 625 >gi|240171031|ref|ZP_04749690.1| DNA polymerase III subunits gamma and tau [Mycobacterium kansasii ATCC 12478] Length=598 Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/605 (80%), Positives = 514/605 (85%), Gaps = 36/605 (5%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PLS+AL+AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 CAQGPTA PCGVCESC++LAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 61 CAQGPTATPCGVCESCLALAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR Sbjct 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMR L+ RICEQEGVV+DDAVYPLVIRAGGGSPRDTLSVLDQL+AG+ HVTY RALGL Sbjct 181 TMRGLIGRICEQEGVVIDDAVYPLVIRAGGGSPRDTLSVLDQLVAGSEGDHVTYRRALGL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG TDVALIDDAVDALAA DAAALFGA+ESVID GHDPRRFATDLLERFRDL+VLQ+VPD Sbjct 241 LGATDVALIDDAVDALAAGDAAALFGAVESVIDAGHDPRRFATDLLERFRDLLVLQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A SRGVVDAPED LDRMR+QAARIG ATLTRYAEVVQAGLGEMRGATAPRLLLEV+CARL Sbjct 301 AVSRGVVDAPEDVLDRMRDQAARIGPATLTRYAEVVQAGLGEMRGATAPRLLLEVICARL 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPA--------------------PQAVP-RPSAA 399 LLPSASDAESALLQRVERIETRL MS+PA P+A P RP+ + Sbjct 361 LLPSASDAESALLQRVERIETRLAMSLPAAAETPDTAMPPRGQADTAAPPRATPARPADS 420 Query 400 AAEPKHQPAREPR-----PVLAPTPASSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGA 454 AA P+ Q R P P A SE AAVR+MWPTVRDKVR RSRTTEVMLAGA Sbjct 421 AAPPRGQADTARRPAALEPAPEPAAAPSELNAAAVRTMWPTVRDKVRQRSRTTEVMLAGA 480 Query 455 TVRALEDNTLVLTHESAPLARRLSEQRNADVLAEALKDALGVNWRVRCETG--EPAAAAS 512 TVRALE +TLVLTH+SAPLARRLSEQRNADV+AEALKDALGV WRVRCE G EP AA+ Sbjct 481 TVRALEGDTLVLTHDSAPLARRLSEQRNADVIAEALKDALGVAWRVRCEVGGPEPVAASV 540 Query 513 PVGGGANVATAKAVNPAPTANSTQRDEEEHMLAEAGRGDPS-PRRDPEEVALELLQNELG 571 P A A+ V P + + DEEE MLAEA R +PS PRRDPEE ALELL++ELG Sbjct 541 P-------AKAEEVVPEIDSAQPREDEEESMLAEASRNNPSEPRRDPEEAALELLRSELG 593 Query 572 ARRID 576 AR ID Sbjct 594 ARPID 598 >gi|183985209|ref|YP_001853500.1| DNA polymerase III (subunit gamma/tau) DnaZX [Mycobacterium marinum M] gi|183178535|gb|ACC43645.1| DNA polymerase III (subunit gamma/tau) DnaZX [Mycobacterium marinum M] Length=633 Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/637 (76%), Positives = 506/637 (80%), Gaps = 63/637 (9%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PLS+AL+AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 CAQGPTA PCG CESC +LAP+APGSIDVVELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 61 CAQGPTATPCGTCESCQALAPSAPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFI+DEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR Sbjct 121 VFIIDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMR L+ RICEQEGVVVD+AVYPLV RAGGGSPRDTLSVLDQL+AGA HVTY RALGL Sbjct 181 TMRGLIGRICEQEGVVVDEAVYPLVTRAGGGSPRDTLSVLDQLVAGAQSNHVTYQRALGL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG TDVALIDDAVDAL A DAAALFGA+ESVID GHDPRRFATDLLERFRDLIVLQ+VPD Sbjct 241 LGATDVALIDDAVDALGAGDAAALFGAVESVIDAGHDPRRFATDLLERFRDLIVLQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A SRGVVD PED LDRMREQAA +G ATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL Sbjct 301 AVSRGVVDGPEDVLDRMREQAAHLGAATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPA---------------------PQAVPRPSAA 399 LLPSASDAESALLQR+ERIETRL MSIPA P+A A Sbjct 361 LLPSASDAESALLQRIERIETRLAMSIPAGAGATSAPAPEAPAAPEAPAAPRATTSARAE 420 Query 400 AAEPKHQPAREP-----------------------------------RPVLAPTPASS-- 422 A E Q R P RP P P S+ Sbjct 421 AKEMVRQSMRRPAPPEPKSAPERPPAPEPRPAPEPRRAPEPRPAPESRPAPVPEPVSAPG 480 Query 423 EPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRN 482 E AAVRSMWPTVR+KVR RSRTTEVMLA ATVRALEDNTLVLTH+SAPLARRLSEQRN Sbjct 481 ELNAAAVRSMWPTVREKVRQRSRTTEVMLAAATVRALEDNTLVLTHDSAPLARRLSEQRN 540 Query 483 ADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEEEH 542 ADV+AEAL+DALGVNWRVRCE G AA P A +S +R+EEE Sbjct 541 ADVIAEALRDALGVNWRVRCEVG----AAEPAATPTPAKAAAPAADPVAVDSARREEEES 596 Query 543 MLAEAGRGDPS-PRRDPEEVALELLQNELGARRIDNA 578 +LAEAGR DPS PRRDPEEVALELL+NELGARRIDNA Sbjct 597 LLAEAGRSDPSEPRRDPEEVALELLRNELGARRIDNA 633 >gi|118619468|ref|YP_907800.1| DNA polymerase III subunits gamma and tau [Mycobacterium ulcerans Agy99] gi|118571578|gb|ABL06329.1| DNA polymerase III (subunit gamma/tau) DnaZX [Mycobacterium ulcerans Agy99] Length=621 Score = 865 bits (2235), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/625 (77%), Positives = 501/625 (81%), Gaps = 51/625 (8%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PLS+AL+AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFAEVVGQEHVTEPLSIALEAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 CAQGPTA PCG CESC +LAP+APGSIDVVELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 61 CAQGPTATPCGTCESCQALAPSAPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFI+DEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLP R Sbjct 121 VFIIDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPRR 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMR L+ RICEQEGVVVD+AVYPLV RAGGGSPRDTLSVLDQL+AGA HVTY R LGL Sbjct 181 TMRGLIGRICEQEGVVVDEAVYPLVTRAGGGSPRDTLSVLDQLVAGAQSNHVTYQRVLGL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG TDVALIDDAVDAL A DAAALFGA+ESVID GHDPRRFATDLLERFRDLIVLQ+VPD Sbjct 241 LGATDVALIDDAVDALGAGDAAALFGAVESVIDAGHDPRRFATDLLERFRDLIVLQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A S GVVD PED LDRMREQAA +G ATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL Sbjct 301 AVSHGVVDGPEDVLDRMREQAAHLGSATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPA---------------PQAVPRPSAAAAEPKH 405 LLPSASDAESALLQR+ERIETRL MSIPA P+A A A E Sbjct 361 LLPSASDAESALLQRIERIETRLAMSIPAGAGATSAPAPEAPAAPRATTSARAGAKEMVR 420 Query 406 QPAREPRP-------------------------------VLAPTPASSEPTVAAVRSMWP 434 Q R P P V P A E AAVRSMWP Sbjct 421 QSMRRPAPPEPKSVPEPPPAPEPRPAPEPRRAPEPRPAPVPEPVSAPGELNAAAVRSMWP 480 Query 435 TVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNADVLAEALKDAL 494 TVR+KVR RSRTTEVMLA ATVRALEDNTLVLTH+SAPLARRLSEQRNADV+AEAL+DAL Sbjct 481 TVREKVRQRSRTTEVMLAAATVRALEDNTLVLTHDSAPLARRLSEQRNADVIAEALRDAL 540 Query 495 GVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEEEHMLAEAGRGDPS- 553 GVNWRVRCE G AA P A +S +R+EEE +LAEAGR DPS Sbjct 541 GVNWRVRCEVG----AAEPAATPTPAKAAAPAADPVAVDSARREEEESLLAEAGRSDPSE 596 Query 554 PRRDPEEVALELLQNELGARRIDNA 578 PRRDPEEVALELL+NELGARRIDNA Sbjct 597 PRRDPEEVALELLRNELGARRIDNA 621 >gi|145221873|ref|YP_001132551.1| DNA polymerase III subunits gamma and tau [Mycobacterium gilvum PYR-GCK] gi|145214359|gb|ABP43763.1| DNA polymerase III, tau subunit [Mycobacterium gilvum PYR-GCK] Length=652 Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/660 (69%), Positives = 491/660 (75%), Gaps = 91/660 (13%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPASFAEVVGQEHVT PLS AL++GRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPASFAEVVGQEHVTEPLSTALNSGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPTA PCGVC+SCV+LAPN PG++DV ELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 61 CEQGPTATPCGVCDSCVALAPNGPGNMDVTELDAASHGGVDDTRELRDRAFYAPAQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 +FIVDEAHMVTTAGFNALLKIVEEPPEHLIF+FATTEPEKVLPTIRSRTHHYPFRLL P+ Sbjct 121 IFIVDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSRTHHYPFRLLAPK 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGA-----ADTHVTYT 235 TMR L+ +I E V VDDAVYPLVIRAGGGSPRDTLSVLDQLLAGA +HV Y Sbjct 181 TMRTLIEKIVASEQVAVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAHADESGTSHVAYQ 240 Query 236 RALGLLGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVL 295 RAL LLG TDVALID+A+DALAA D+AALFGA+E VID GHDPRRFATDLLERFRDLIVL Sbjct 241 RALSLLGATDVALIDEAIDALAANDSAALFGAVEGVIDAGHDPRRFATDLLERFRDLIVL 300 Query 296 QSVPDAASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEV 355 Q+VPDA +RGVVD PED L+RMREQA+++G ATLTRYAEVV GLGEMRGATAPRLLLEV Sbjct 301 QAVPDAVARGVVDGPEDVLERMREQASQLGTATLTRYAEVVHGGLGEMRGATAPRLLLEV 360 Query 356 VCARLLLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAR------ 409 VCARLLLPSASD E+ALLQRVERIETRLD+SIPA + +A A P+ Q R Sbjct 361 VCARLLLPSASDTEAALLQRVERIETRLDLSIPASDEI--VAAGPAVPRKQFVRRSEAAP 418 Query 410 -----------------------------------EPRPVLAPTPASS------------ 422 EPRPV AP P + Sbjct 419 VASPPAEAAPPPPPAAAPPSAPTPPPAAAPPPRQAEPRPVPAPAPEAKPVTPEPDPEPPP 478 Query 423 ------------------------EPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRA 458 EP AAVRSMW TVR+KVR RSRTTEVMLAGA VRA Sbjct 479 PMRAPAAPAVEAPPATPAAAVAAGEPNAAAVRSMWTTVREKVRERSRTTEVMLAGAIVRA 538 Query 459 LEDNTLVLTHESAPLARRLSEQRNADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGA 518 +E +TL+LTHESAPLARRL EQRNADV+ EALKDALGVNW++ C EP AA+PV Sbjct 539 VEGDTLLLTHESAPLARRLCEQRNADVIREALKDALGVNWKIVC---EPGVAAAPVPSAP 595 Query 519 NVATAKAVNPAPTANSTQRDEEEHMLAEAGRGDP-SPRRDPEEVALELLQNELGARRIDN 577 P P + D+EE MLAEA + DP +PRRDPEE ALELLQ+ELGARRID Sbjct 596 EPVRGGPAEPPPQPDG---DDEESMLAEASKVDPAAPRRDPEEAALELLQSELGARRIDG 652 >gi|120406477|ref|YP_956306.1| DNA polymerase III subunits gamma and tau [Mycobacterium vanbaalenii PYR-1] gi|119959295|gb|ABM16300.1| DNA polymerase III, tau subunit [Mycobacterium vanbaalenii PYR-1] Length=643 Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/654 (70%), Positives = 495/654 (76%), Gaps = 88/654 (13%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FA+VVGQEHVT PLS AL++GRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFADVVGQEHVTEPLSTALNSGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 CA+GPTA PCGVC+SCV+LAPN PG++DVVELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 61 CAEGPTATPCGVCDSCVALAPNGPGNVDVVELDAASHGGVDDTRELRDRAFYAPAQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 +FIVDEAHMVTTAGFNALLKIVEEPPEHLIF+FATTEPEKVLPTIRSRTHHYPFRLL P+ Sbjct 121 IFIVDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSRTHHYPFRLLAPK 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMR L+ +I E V VDDAVYPLVIRAGGGSPRDTLSVLDQLLAGA D HV Y RAL L Sbjct 181 TMRTLIEKIVASESVRVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAEDDHVAYQRALSL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG TDVALID+AVDALAA DAAALFGA+E V+D GHDPRRFATDLLERFRDLIVLQ+VPD Sbjct 241 LGATDVALIDEAVDALAADDAAALFGAVEGVVDAGHDPRRFATDLLERFRDLIVLQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AA+RGVVD PED L+RMREQAAR+G ATLTRYAEVV AGLGEMRGATAPRLLLEVVCARL Sbjct 301 AAARGVVDGPEDVLERMREQAARLGTATLTRYAEVVHAGLGEMRGATAPRLLLEVVCARL 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPAPQ-------AVPRPS---------------- 397 LLPSASD E+ALLQRVERIETRLDMSIPA AVPR Sbjct 361 LLPSASDTEAALLQRVERIETRLDMSIPASDEISASAPAVPRKQFVRKSEAAPQPAPSAQ 420 Query 398 --------AAAAEPKHQPAREPRPVLAPTPASS--------------------------- 422 + EP PAREP PV P +S Sbjct 421 APAPARAPEPSPEPTPVPAREPDPVPEPPREASKPVEPEPVPPPLPPPPPVRPPAAPVVE 480 Query 423 -------------EPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHE 469 EP+ AAVRSMW TVR+KVR RSRTTEVMLAGA VRA+E +TL+L+HE Sbjct 481 APATTPAAAVATGEPSAAAVRSMWTTVREKVRERSRTTEVMLAGAIVRAVEGDTLLLSHE 540 Query 470 SAPLARRLSEQRNADVLAEALKDALGVNWRVRCETGEPAAAA-----SPVGGGANVATAK 524 SAPLA+RLSEQRNADV+ EALKDALGVNW++RC+ G A+A P G A Sbjct 541 SAPLAKRLSEQRNADVIREALKDALGVNWKIRCDPGTAPASAAAPAREPQRGPAEPPPPP 600 Query 525 AVNPAPTANSTQRDEEEHMLAEAGRGDP-SPRRDPEEVALELLQNELGARRIDN 577 ++ + MLAEAG DP +PRRDPEE ALELLQNELGARRID Sbjct 601 DIDDEES-----------MLAEAGNSDPAAPRRDPEEAALELLQNELGARRIDG 643 >gi|289571965|ref|ZP_06452192.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis T17] gi|289545719|gb|EFD49367.1| DNA polymerase III gamma/tau subunit dnaZ/X [Mycobacterium tuberculosis T17] Length=409 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/383 (99%), Positives = 383/383 (100%), Gaps = 0/383 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR Sbjct 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR Sbjct 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL Sbjct 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD Sbjct 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL Sbjct 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 Query 361 LLPSASDAESALLQRVERIETRL 383 LLPSASDAESALLQRVERIETR+ Sbjct 361 LLPSASDAESALLQRVERIETRV 383 >gi|315446392|ref|YP_004079271.1| DNA polymerase III subunit gamma/tau [Mycobacterium sp. Spyr1] gi|315264695|gb|ADU01437.1| DNA polymerase III, subunit gamma/tau [Mycobacterium sp. Spyr1] Length=658 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/414 (82%), Positives = 367/414 (89%), Gaps = 7/414 (1%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPASFAEVVGQEHVT PLS AL++GRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPASFAEVVGQEHVTEPLSTALNSGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPTA PCGVC+SCV+LAPN PG++DV ELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 61 CEQGPTATPCGVCDSCVALAPNGPGNMDVTELDAASHGGVDDTRELRDRAFYAPAQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 +FIVDEAHMVTTAGFNALLKIVEEPPEHLIF+FATTEPEKVLPTIRSRTHHYPFRLL P+ Sbjct 121 IFIVDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSRTHHYPFRLLAPK 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGA-----ADTHVTYT 235 TMR L+ +I E V VDDAVYPLVIRAGGGSPRDTLSVLDQLLAGA +HV Y Sbjct 181 TMRTLIEKIVASEQVAVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAHADESGTSHVAYQ 240 Query 236 RALGLLGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVL 295 RAL LLG TDVALID+A+DALAA D+AALFGA+E VID GHDPRRFATDLLERFRDLIVL Sbjct 241 RALSLLGATDVALIDEAIDALAANDSAALFGAVEGVIDAGHDPRRFATDLLERFRDLIVL 300 Query 296 QSVPDAASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEV 355 Q+VPDA +RGVVD PED L+RMREQA+++G ATLTRYAEVV GLGEMRGATAPRLLLEV Sbjct 301 QAVPDAVARGVVDGPEDVLERMREQASQLGTATLTRYAEVVHGGLGEMRGATAPRLLLEV 360 Query 356 VCARLLLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAR 409 VCARLLLPSASD E+ALLQRVERIETRLD+SIPA + +AA A P+ Q R Sbjct 361 VCARLLLPSASDTEAALLQRVERIETRLDLSIPASDEI--VAAAPAVPRKQFVR 412 Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 103/156 (67%), Positives = 116/156 (75%), Gaps = 7/156 (4%) Query 423 EPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRN 482 EP AAVRSMW TVR+KVR RSRTTEVMLAGA VRA+E +TL+LTHESAPLARRL EQRN Sbjct 509 EPNAAAVRSMWTTVREKVRERSRTTEVMLAGAIVRAVEGDTLLLTHESAPLARRLCEQRN 568 Query 483 ADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEEEH 542 ADV+ EALKDALGVNW++ C EP AA+PV P P + D+EE Sbjct 569 ADVIREALKDALGVNWKIVC---EPGVAAAPVPSAPEPVRGGPAEPPPQPDG---DDEES 622 Query 543 MLAEAGRGDP-SPRRDPEEVALELLQNELGARRIDN 577 MLAEA + DP +PRRDPEE ALELLQ+ELGARRID Sbjct 623 MLAEASKVDPAAPRRDPEEAALELLQSELGARRIDG 658 >gi|333992650|ref|YP_004525264.1| DNA polymerase III subunits gamma/tau [Mycobacterium sp. JDM601] gi|333488618|gb|AEF38010.1| DNA polymerase III (subunit gamma/tau) DnaZX [Mycobacterium sp. JDM601] Length=633 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/396 (84%), Positives = 357/396 (91%), Gaps = 7/396 (1%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PL AL AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFAEVVGQEHVTEPLCTALSAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 CAQGPT PCG C+SCV+LAPN PGSIDVVELDAASHGGVDDTR+LRDRAFYAP QSRYR Sbjct 61 CAQGPTPTPCGTCDSCVALAPNGPGSIDVVELDAASHGGVDDTRDLRDRAFYAPAQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 +FI+DEAHMVT AGFNALLKIVEEPPEHLIF+FATTEPEKVLPTIRSRTHHYPFRLL PR Sbjct 121 IFIIDEAHMVTPAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSRTHHYPFRLLAPR 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAAD-------THVT 233 TMR L+ RICEQE V VDDAVYPLVIRAGGGSPRDTLSVLDQLLAG+ +HV Sbjct 181 TMRELIGRICEQENVAVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGSEKMPGDPNVSHVH 240 Query 234 YTRALGLLGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLI 293 Y RALGLLG TDVALID+AVDALAA DAA++F A+E+V+D GHDPRRFA DLLERFRDLI Sbjct 241 YQRALGLLGATDVALIDEAVDALAAGDAASVFAAVEAVVDAGHDPRRFAIDLLERFRDLI 300 Query 294 VLQSVPDAASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLL 353 VLQ+VPDA ++GVVDAPED L+RM +QA R+G ATL RYAEVV AGLGEMRGATAPRLLL Sbjct 301 VLQAVPDAVAKGVVDAPEDILERMHDQATRLGSATLARYAEVVHAGLGEMRGATAPRLLL 360 Query 354 EVVCARLLLPSASDAESALLQRVERIETRLDMSIPA 389 EVVCARLLLPSA+D E+ALLQRVERIE+RLDMSIP+ Sbjct 361 EVVCARLLLPSAADTEAALLQRVERIESRLDMSIPS 396 >gi|118469964|ref|YP_890504.1| DNA polymerase III subunits gamma and tau [Mycobacterium smegmatis str. MC2 155] gi|118171251|gb|ABK72147.1| DNA polymerase III gamma/tau subunit [Mycobacterium smegmatis str. MC2 155] Length=665 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/413 (83%), Positives = 366/413 (89%), Gaps = 6/413 (1%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+F+EVVGQEHVT PL AL AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFSEVVGQEHVTEPLCTALTAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPT PCGVC+SCV+LAPN PG++DVVELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 61 CDQGPTPTPCGVCDSCVALAPNGPGNVDVVELDAASHGGVDDTRELRDRAFYAPAQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 +FIVDEAHMVTTAGFNALLKIVEEPP+HLIF+FATTEPEKVLPTIRSRTHHYPFRLL PR Sbjct 121 IFIVDEAHMVTTAGFNALLKIVEEPPDHLIFVFATTEPEKVLPTIRSRTHHYPFRLLAPR 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLA----GAADTHVTYTR 236 TMR LL RIC +E V VDDAVYPLVIRAGGGSPRDTLSVLDQLLA GA H+TY R Sbjct 181 TMRPLLERICAEENVEVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGSEQGANGNHITYQR 240 Query 237 ALGLLGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQ 296 AL LLG TD+ALIDDAV+ALAA DAAALFGA+E+V+D GHDPRRFATDLLERFRDLIVLQ Sbjct 241 ALSLLGATDLALIDDAVEALAANDAAALFGAVEAVVDAGHDPRRFATDLLERFRDLIVLQ 300 Query 297 SVPDAASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVV 356 +VPDA +RGVVDAP D L+RMREQA R+G TLTRYAEVV AGLGEMRGATAPRLLLEV+ Sbjct 301 AVPDAVTRGVVDAPTDVLERMREQAERLGAGTLTRYAEVVHAGLGEMRGATAPRLLLEVM 360 Query 357 CARLLLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAR 409 CARLLLPSA+D ESALLQR+ERIETRLDMSIPA +A A AEP Q R Sbjct 361 CARLLLPSAADTESALLQRIERIETRLDMSIPAGEA--SSGVAPAEPAKQFVR 411 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 102/158 (65%), Positives = 118/158 (75%), Gaps = 6/158 (3%) Query 423 EPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRN 482 +P AAVRSMW TVR+KVR RSRTTEVML+GA VRA+E +TLVL+HESAPLA+RL+E RN Sbjct 511 QPNAAAVRSMWSTVREKVRQRSRTTEVMLSGAIVRAVEGDTLVLSHESAPLAKRLTESRN 570 Query 483 ADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQRDEEEH 542 ++V+ EALKDALGVNW+VRC TG P AA + A +A P P R EE+ Sbjct 571 SEVIREALKDALGVNWKVRCVTGAPEAAVAAPPAATGGAAPQAPAPDPV--EIARAEEDD 628 Query 543 MLAEAGRGDPS---PRRDPEEVALELLQNELGARRIDN 577 MLAEA +PS PRRDPEEVALELLQNELGARRID Sbjct 629 MLAEAA-AEPSESMPRRDPEEVALELLQNELGARRIDG 665 >gi|169627413|ref|YP_001701062.1| DNA polymerase III subunit gamma/tau [Mycobacterium abscessus ATCC 19977] gi|169239380|emb|CAM60408.1| DNA polymerase III, subunit gamma/tau [Mycobacterium abscessus] Length=679 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/388 (86%), Positives = 354/388 (92%), Gaps = 0/388 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 VALYRKYRPA+FAEVVGQEHVT PL+ ALDAGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 17 VALYRKYRPATFAEVVGQEHVTGPLTTALDAGRINHAYLFSGPRGCGKTSSARILARSLN 76 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPT+ PCG CESCV+LAPN G++DV+ELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 77 CVQGPTSTPCGTCESCVALAPNGSGNVDVIELDAASHGGVDDTRELRDRAFYAPAQSRYR 136 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 +FI+DEAHMVTTAGFNALLKIVEEPPEHLIF+FATTEPEKVLPTIRSRTHHYPFRLL P+ Sbjct 137 IFIIDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSRTHHYPFRLLAPK 196 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMR L+ IC QE V VDD VYPLVIRAG GSPRDTLSVLDQLLAGA + VTY RAL L Sbjct 197 TMRTLVEGICAQENVSVDDPVYPLVIRAGAGSPRDTLSVLDQLLAGADEERVTYQRALSL 256 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTD+ALIDDAVDALAA D AA+FGAIE V+D GHDPRRF TDLLERFRDLIVLQ+VPD Sbjct 257 LGVTDIALIDDAVDALAAGDGAAVFGAIEGVMDAGHDPRRFGTDLLERFRDLIVLQAVPD 316 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A RGVVDAP+D L+RMREQA RIG ATLTRYAEV+ AGLGEMRGATAPRLLLEVVCARL Sbjct 317 AVERGVVDAPQDVLERMREQAERIGPATLTRYAEVLHAGLGEMRGATAPRLLLEVVCARL 376 Query 361 LLPSASDAESALLQRVERIETRLDMSIP 388 LLPSA+DAESA+LQRVERIE RLDMS+P Sbjct 377 LLPSATDAESAVLQRVERIEKRLDMSVP 404 >gi|108801872|ref|YP_642069.1| DNA polymerase III subunits gamma and tau [Mycobacterium sp. MCS] gi|119871025|ref|YP_940977.1| DNA polymerase III subunits gamma and tau [Mycobacterium sp. KMS] gi|108772291|gb|ABG11013.1| DNA polymerase III, tau subunit [Mycobacterium sp. MCS] gi|119697114|gb|ABL94187.1| DNA polymerase III, tau subunit [Mycobacterium sp. KMS] Length=616 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/389 (88%), Positives = 358/389 (93%), Gaps = 0/389 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PLS AL AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFAEVVGQEHVTEPLSTALSAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPT PCG C+SCV+LAPN PG++DV ELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 61 CEQGPTPTPCGTCDSCVALAPNGPGNMDVTELDAASHGGVDDTRELRDRAFYAPAQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 +FIVDEAHMVTTAGFNALLKIVEEPPEHLIF+FATTEPEKVLPTIRSRTHHYPFRLL P+ Sbjct 121 IFIVDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSRTHHYPFRLLAPK 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMR LL RIC EGV VDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAA V Y RAL L Sbjct 181 TMRTLLERICADEGVSVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAAGNRVEYGRALAL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG TDVALIDDAVDALAA DAAALFGA+ESVID GHDPRRFA DLLERFRDLIVLQ+VPD Sbjct 241 LGATDVALIDDAVDALAAGDAAALFGAVESVIDAGHDPRRFAVDLLERFRDLIVLQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AA+RGVVDAP D L+RMR+QAAR+G ATLTRYAEVV AGLGEMRGATAPRLLLEVVCARL Sbjct 301 AAARGVVDAPGDVLERMRDQAARLGSATLTRYAEVVHAGLGEMRGATAPRLLLEVVCARL 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPA 389 LLPSASD ESALLQRVERIETRL+MSIPA Sbjct 361 LLPSASDTESALLQRVERIETRLEMSIPA 389 >gi|54022248|ref|YP_116490.1| DNA polymerase III subunits gamma and tau [Nocardia farcinica IFM 10152] gi|54013756|dbj|BAD55126.1| putative DNA polymerase III gamma subunit [Nocardia farcinica IFM 10152] Length=825 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/411 (79%), Positives = 351/411 (86%), Gaps = 0/411 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PLS ALD GRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFAEVVGQEHVTEPLSTALDTGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPT+ PCGVC SCV+LAP PG++DV+ELDAASHGGVDDTRELRDRAFYAP +SRYR Sbjct 61 CEQGPTSTPCGVCASCVALAPGGPGNLDVIELDAASHGGVDDTRELRDRAFYAPAESRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTTAGFNALLKIVEEPP HLIFIFATTEP+KVLPTIRSRTHHYPFRLLPP Sbjct 121 VFIVDEAHMVTTAGFNALLKIVEEPPAHLIFIFATTEPDKVLPTIRSRTHHYPFRLLPPA 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMR LL RICEQE V V++AVYPLVIRAGGGSPRD+LSVLDQLLAGA VTY RA+ L Sbjct 181 TMRGLLGRICEQEHVTVEEAVYPLVIRAGGGSPRDSLSVLDQLLAGAGPEGVTYHRAVAL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTDVALIDDAV ALA D AALFG ++ V++ GHDPRRFA DLLERFRDLI+L++VPD Sbjct 241 LGVTDVALIDDAVQALADDDGAALFGTVDRVMEAGHDPRRFAVDLLERFRDLILLRAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A RG+V PED LDRMREQA RIG ATLTRYAE++ GLGEMRGATAPRLLLEVVCAR+ Sbjct 301 AVERGLVAGPEDVLDRMREQAERIGPATLTRYAELLHEGLGEMRGATAPRLLLEVVCARM 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREP 411 LLP+ SDAESA LQR+ER+E + + P P PS A +P EP Sbjct 361 LLPAVSDAESATLQRLERLERGMAGGVFTPPTAPHPSGEAGPAVPRPGNEP 411 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/106 (38%), Positives = 53/106 (50%), Gaps = 18/106 (16%) Query 428 AVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNADVLA 487 AV W +R KVR S T + ML+GA+V +E + +V H S LA RLSE RN D + Sbjct 602 AVEGAWADIRAKVREYSATMQAMLSGASVARIEGSAIVFAHPSPVLAGRLSEPRNIDAVR 661 Query 488 EALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTAN 533 A++ LG + +R E+G AV PAP AN Sbjct 662 AAVRAVLGHDHEIRWESG------------------AAVKPAPAAN 689 Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/51 (55%), Positives = 33/51 (65%), Gaps = 1/51 (1%) Query 528 PAPTANSTQRDEEEHMLAEAGRG-DPSPRRDPEEVALELLQNELGARRIDN 577 PA +EE+ MLAEA R P RRDP+EVALELL+ ELGA R+D Sbjct 775 PAAVPGPLTAEEEQEMLAEAARPVAPEDRRDPDEVALELLRAELGATRLDG 825 >gi|126437840|ref|YP_001073531.1| DNA polymerase III subunits gamma and tau [Mycobacterium sp. JLS] gi|126237640|gb|ABO01041.1| DNA polymerase III, tau subunit [Mycobacterium sp. JLS] Length=618 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/389 (88%), Positives = 358/389 (93%), Gaps = 0/389 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PLS AL AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFAEVVGQEHVTEPLSTALSAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPT PCG C+SCV+LAPN PG++DV ELDAASHGGVDDTRELRDRAFYAP QSRYR Sbjct 61 CEQGPTPTPCGTCDSCVALAPNGPGNMDVTELDAASHGGVDDTRELRDRAFYAPAQSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 +FIVDEAHMVTTAGFNALLKIVEEPPEHLIF+FATTEPEKVLPTIRSRTHHYPFRLL P+ Sbjct 121 IFIVDEAHMVTTAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSRTHHYPFRLLAPK 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMR LL RIC EGV VDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAA V Y RAL L Sbjct 181 TMRTLLERICADEGVTVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAAGDRVEYGRALAL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG TDVALIDDA+DALAA DAAALFGA+ESVID GHDPRRFA DLLERFRDLIVLQ+VPD Sbjct 241 LGATDVALIDDALDALAAGDAAALFGAVESVIDAGHDPRRFAVDLLERFRDLIVLQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AA+RGVVDAP D L+RMR+QAAR+G ATLTRYAEVV AGLGEMRGATAPRLLLEVVCARL Sbjct 301 AAARGVVDAPGDVLERMRDQAARLGSATLTRYAEVVHAGLGEMRGATAPRLLLEVVCARL 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPA 389 LLPSASD ESALLQRVERIETRL+MSIPA Sbjct 361 LLPSASDTESALLQRVERIETRLEMSIPA 389 >gi|226363536|ref|YP_002781318.1| DNA polymerase III subunits gamma and tau [Rhodococcus opacus B4] gi|226242025|dbj|BAH52373.1| DNA polymerase III gamma/tau subunit [Rhodococcus opacus B4] Length=747 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/383 (82%), Positives = 339/383 (89%), Gaps = 0/383 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPASFAEVVGQEHVT PLS ALDAGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPASFAEVVGQEHVTEPLSTALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C +GPT+ PCG C SCV+L P G++DV ELDAASHGGVDDTRELRDRAFYAP +SRYR Sbjct 61 CVEGPTSTPCGSCPSCVALGPGGSGNLDVTELDAASHGGVDDTRELRDRAFYAPAESRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLL P Sbjct 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLAPT 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMR LL +IC+QE V V D VYPLVIRAGGGSPRD+LS+LDQLLAGA D VTY RAL L Sbjct 181 TMRGLLEKICQQESVPVADPVYPLVIRAGGGSPRDSLSILDQLLAGAGDEGVTYPRALAL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTDVALIDDAVDALA D AALFG ++ V+D GHDPRRFA DLLER RDLI++Q+VPD Sbjct 241 LGVTDVALIDDAVDALATGDGAALFGTVDRVMDAGHDPRRFAVDLLERLRDLILMQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AA RG+VDAP D L+ MR Q RIG ATLTRYAEV+ AGLGEMRGATAPRLLLEV+CAR+ Sbjct 301 AAERGLVDAPGDVLEHMRAQVQRIGPATLTRYAEVMHAGLGEMRGATAPRLLLEVMCARM 360 Query 361 LLPSASDAESALLQRVERIETRL 383 LLPSASDAESA+LQR+ER+E L Sbjct 361 LLPSASDAESAVLQRLERVERGL 383 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/83 (35%), Positives = 45/83 (55%), Gaps = 0/83 (0%) Query 421 SSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQ 480 S+ P A +R W ++R+KV R++ ML+ ATV ++ N L+L H L R++ Sbjct 527 SAGPDAATLREAWNSLREKVSQRNKILPAMLSAATVHDVQGNRLILAHPVPNLGARIASP 586 Query 481 RNADVLAEALKDALGVNWRVRCE 503 NA V+AE L + G W V + Sbjct 587 HNAQVIAEVLSEMFGGTWEVEYQ 609 Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust. Identities = 22/44 (50%), Positives = 30/44 (69%), Gaps = 0/44 (0%) Query 534 STQRDEEEHMLAEAGRGDPSPRRDPEEVALELLQNELGARRIDN 577 ST DEEE A DP+ RRDPE+VA ELL++ LGA++++ Sbjct 704 STPEDEEEMFKEAAEPVDPATRRDPEDVAFELLKDMLGAKKLEG 747 >gi|312137857|ref|YP_004005193.1| DNA polymerase III gamma subunit [Rhodococcus equi 103S] gi|311887196|emb|CBH46505.1| DNA polymerase III gamma subunit [Rhodococcus equi 103S] Length=723 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/380 (83%), Positives = 342/380 (90%), Gaps = 0/380 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPASFAEVVGQEHVT PLS ALDAGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPASFAEVVGQEHVTEPLSTALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPT+ PCG C SC++L P G++DV+ELDAASHGGV+DTRELRDRAFYAP +SRYR Sbjct 61 CVQGPTSTPCGECASCIALGPGGAGNLDVIELDAASHGGVEDTRELRDRAFYAPAESRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLL P Sbjct 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLAPS 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMR LL +IC QE V V+DAVYPLVIRAGGGSPRD+LSVLDQLLAGA + VTY RAL L Sbjct 181 TMRGLLEKICAQEHVPVEDAVYPLVIRAGGGSPRDSLSVLDQLLAGAGEEGVTYARALAL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTDVALID+AVDALAA D AALFG ++ V+D GHDPRRFA DLLER RDLI++++VPD Sbjct 241 LGVTDVALIDEAVDALAANDGAALFGTVDKVMDAGHDPRRFAVDLLERLRDLILMRAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AA RG+VDAP D LDRMRE+A RIG ATL RYAE+V GLGEMRGATAPRLLLEV+CAR+ Sbjct 301 AAERGLVDAPGDVLDRMREEAERIGPATLARYAELVHDGLGEMRGATAPRLLLEVMCARM 360 Query 361 LLPSASDAESALLQRVERIE 380 LLPSA+DAESA+LQR+ERIE Sbjct 361 LLPSATDAESAVLQRLERIE 380 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/93 (51%), Positives = 60/93 (65%), Gaps = 0/93 (0%) Query 421 SSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQ 480 S P AAVR++W VR KVR RSRT EVML+GATVR ++ + LVL H+S PL +RL+E Sbjct 522 SGRPDAAAVRAVWSEVRAKVRERSRTVEVMLSGATVRGIDGDRLVLAHDSVPLVKRLAEP 581 Query 481 RNADVLAEALKDALGVNWRVRCETGEPAAAASP 513 RN +V+ A+ D G W V CE G +P Sbjct 582 RNTEVIRAAMHDVFGGEWDVTCEHGSAPVQQAP 614 >gi|111021176|ref|YP_704148.1| DNA polymerase III subunits gamma and tau [Rhodococcus jostii RHA1] gi|110820706|gb|ABG95990.1| DNA polymerase III subunit [Rhodococcus jostii RHA1] Length=753 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/383 (82%), Positives = 339/383 (89%), Gaps = 0/383 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPASF+EVVGQEHVT PLS ALDAGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPASFSEVVGQEHVTEPLSTALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C +GPT+ PCG C SCV+L P G++DV ELDAASHGGVDDTRELRDRAFYAP +SRYR Sbjct 61 CVEGPTSTPCGQCPSCVALGPGGSGNLDVTELDAASHGGVDDTRELRDRAFYAPAESRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLL P Sbjct 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLAPA 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMR LL +IC+QE V V D VYPLVIRAGGGSPRD+LS+LDQLLAGA D VTY RAL L Sbjct 181 TMRGLLEKICQQESVPVADPVYPLVIRAGGGSPRDSLSILDQLLAGAGDEGVTYPRALAL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTDVALIDDAVDALA D AALFG ++ V+D GHDPRRFA DLLER RDLI++Q+VPD Sbjct 241 LGVTDVALIDDAVDALATGDGAALFGTVDRVMDAGHDPRRFAVDLLERLRDLILMQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AA RG+VDAP D L+ MR Q RIG ATLTRYAEV+ AGLGEMRGATAPRLLLEV+CAR+ Sbjct 301 AAERGLVDAPGDVLEHMRAQVQRIGPATLTRYAEVMHAGLGEMRGATAPRLLLEVMCARM 360 Query 361 LLPSASDAESALLQRVERIETRL 383 LLP+ASDAESA+LQR+ER+E L Sbjct 361 LLPAASDAESAVLQRLERVERGL 383 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 0/75 (0%) Query 429 VRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNADVLAE 488 +R W ++R+KV R++ ML+ ATV ++ L+L H L R++ NA V+ E Sbjct 540 LREAWNSLREKVSQRNKILPAMLSAATVHDVQGYRLILAHPVPNLGARIASPHNAQVITE 599 Query 489 ALKDALGVNWRVRCE 503 L + G W V + Sbjct 600 VLAEMFGGTWEVEYQ 614 Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust. Identities = 15/27 (56%), Positives = 23/27 (86%), Gaps = 0/27 (0%) Query 551 DPSPRRDPEEVALELLQNELGARRIDN 577 DP+ RRDPE+VA ELL++ LGA++++ Sbjct 727 DPTTRRDPEDVAFELLKDMLGAKKLEG 753 >gi|343926396|ref|ZP_08765901.1| DNA polymerase III gamma/tau subunit [Gordonia alkanivorans NBRC 16433] gi|343763634|dbj|GAA12827.1| DNA polymerase III gamma/tau subunit [Gordonia alkanivorans NBRC 16433] Length=864 Score = 622 bits (1603), Expect = 6e-176, Method: Compositional matrix adjust. Identities = 304/405 (76%), Positives = 344/405 (85%), Gaps = 4/405 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYR YRPA+FA+VVGQEHVT PLS ALD+GRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRTYRPATFADVVGQEHVTDPLSRALDSGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 CA+GPT+ PCG C SCV+LAP PG++DV+ELDAASHGGVDDTRELRDRAFYAP +SRYR Sbjct 61 CAEGPTSRPCGTCTSCVALAPGGPGNLDVIELDAASHGGVDDTRELRDRAFYAPAESRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVT AGFNALLKIVEEPPEHLIF+FATTEPEKVLPTIRSRTHHYPFRLL P Sbjct 121 VFIVDEAHMVTNAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSRTHHYPFRLLAPP 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 MR LL +ICE+EGV V VYPLVIRAGGGSPRD+LS+LDQLLAGA D V Y RAL L Sbjct 181 VMRGLLEKICEREGVTVAPEVYPLVIRAGGGSPRDSLSILDQLLAGADDQGVAYERALAL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTDVALID AVDALA+ D AALFGA+E V+D GHDPRRFA DLLER RDLI+LQ+VPD Sbjct 241 LGVTDVALIDTAVDALASADGAALFGAVEKVVDAGHDPRRFAVDLLERLRDLILLQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AA RG+V+AP D L RM+ Q +G A+LTR+AE+V LGEMRG T+PRLLLEV+CAR+ Sbjct 301 AADRGLVEAPGDQLARMQSQIETLGPASLTRFAEIVHDALGEMRGTTSPRLLLEVMCARM 360 Query 361 LLPSASDAESALLQRVERIETRL-DMSIPAPQAVPRPSAAAAEPK 404 LLP S+ ++ALLQR+ER+E+ + SIP P +P+ EPK Sbjct 361 LLPGVSNDDAALLQRLERLESGIGTTSIPVPA---KPAEPEPEPK 402 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/181 (31%), Positives = 79/181 (44%), Gaps = 32/181 (17%) Query 428 AVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNADVLA 487 A+R +P +R VR RS++ E ML+ A + LE T+VL H L RLS ++ Sbjct 684 AIRKRYPEIRAAVRERSKSLEPMLSAAVIADLEGTTVVLGHPVEVLVGRLSAPHAVTIIR 743 Query 488 EALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPAPTANSTQR---------- 537 EAL + G VR P A + G + + P + + R Sbjct 744 EALSEVFGTPLDVRTVHQAPGTAVASSAAGGAQSAKQQAKPRQSYSRPSRSRDQSAAAPP 803 Query 538 ---------------------DEEE-HMLAEAGRGDPSPRRDPEEVALELLQNELGARRI 575 DEE M+A+A G P R DP++VALELL++ELGAR I Sbjct 804 PPEPVAEPEEPEPPRADEDIPDEERAEMVADARTGAPEQRLDPDQVALELLKSELGARPI 863 Query 576 D 576 + Sbjct 864 E 864 >gi|262200446|ref|YP_003271654.1| DNA polymerase III subunits gamma/tau [Gordonia bronchialis DSM 43247] gi|262083793|gb|ACY19761.1| DNA polymerase III, subunits gamma and tau [Gordonia bronchialis DSM 43247] Length=774 Score = 617 bits (1592), Expect = 1e-174, Method: Compositional matrix adjust. Identities = 304/404 (76%), Positives = 338/404 (84%), Gaps = 3/404 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYR YRPA+FA+VVGQEHVT PLS ALDAGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRTYRPATFADVVGQEHVTDPLSHALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPT+ PCG C SCV+LAP PG++DV+ELDAASHGGVDDTRELRDRAFYAP +SRYR Sbjct 61 CVQGPTSTPCGECVSCVALAPGGPGNLDVIELDAASHGGVDDTRELRDRAFYAPAESRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVT AGFNALLKIVEEPPEHLIF+FATTEPEKVLPTIRSRTHHYPFRLL P Sbjct 121 VFIVDEAHMVTNAGFNALLKIVEEPPEHLIFVFATTEPEKVLPTIRSRTHHYPFRLLAPP 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 MR LL RIC QE V V VYPLVIRAGGGSPRD+LS+LDQLLAGA D VTY RAL L Sbjct 181 VMRGLLERICAQEHVTVAPEVYPLVIRAGGGSPRDSLSILDQLLAGADDRGVTYDRALAL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTD+ALIDD +DALA D A LFG +E V+D GHDPRRFA DLLER RDLI+LQ+VPD Sbjct 241 LGVTDIALIDDTIDALATGDGATLFGTVEKVVDAGHDPRRFAVDLLERLRDLILLQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AA RG+V+AP D L RM Q +G A+LTR+AE+V A LGEMRG T+PRLLLEV+CAR+ Sbjct 301 AAERGLVEAPGDQLARMNRQIETLGAASLTRFAELVHAALGEMRGTTSPRLLLEVMCARM 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPK 404 LLP+ S E A+LQR+ER+E+ + S+P P A PS EPK Sbjct 361 LLPAVSADEIAVLQRLERLESGVRASVPIPAA---PSEPEPEPK 401 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 64/216 (30%), Positives = 91/216 (43%), Gaps = 38/216 (17%) Query 396 PSAAAAEPKHQPAREPRPVLAPT-PASSEPTVAAVRSMWPTVRDKVRLRS---RTTEVML 451 P + P+ P EP P APT P T+ R + VR VR +S +T E ML Sbjct 562 PPDEPSSPRRAPDPEPEPEAAPTVPGLDADTL---RKRFQEVRAAVRAQSPQGKTVEPML 618 Query 452 AGATVRALEDNTLVLTHESAPLARRLSEQRNADVLAEALKDALGVNWRVR---------- 501 + ATV L+ + +VL+H + L RLS N ++ AL++ G VR Sbjct 619 SPATVHDLDGDVVVLSHPTELLVGRLSAPHNVAIIRAALQEVFGTPLDVRTIHVPPGAAA 678 Query 502 ----------CETGEPAAAAS----------PVGGGANVATAKAVNPAPTANSTQRDEE- 540 + +P S P P A+ DEE Sbjct 679 PAGAPRQSRTAQQSKPRQTFSRPSRARDQGAPSAPAPEPVAEPEEPEPPRADEDIPDEER 738 Query 541 EHMLAEAGRGDPSPRRDPEEVALELLQNELGARRID 576 + M+A+A P R DP++VALELL+ ELGAR ++ Sbjct 739 KEMVADAQAASPEGRHDPDKVALELLKTELGARPLE 774 >gi|325676041|ref|ZP_08155723.1| DNA polymerase III, gamma/tau subunit DnaX [Rhodococcus equi ATCC 33707] gi|325553081|gb|EGD22761.1| DNA polymerase III, gamma/tau subunit DnaX [Rhodococcus equi ATCC 33707] Length=398 Score = 613 bits (1581), Expect = 2e-173, Method: Compositional matrix adjust. Identities = 299/366 (82%), Positives = 328/366 (90%), Gaps = 0/366 (0%) Query 15 VVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTANPCGVCE 74 +VGQEHVT PLS ALDAGRINHAYLFSGPRGCGKTSSARILARSLNC QGPT+ PCG C Sbjct 1 MVGQEHVTEPLSTALDAGRINHAYLFSGPRGCGKTSSARILARSLNCVQGPTSTPCGECA 60 Query 75 SCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRVFIVDEAHMVTTAG 134 SC++L P G++DV+ELDAASHGGV+DTRELRDRAFYAP +SRYRVFIVDEAHMVTTAG Sbjct 61 SCIALGPGGAGNLDVIELDAASHGGVEDTRELRDRAFYAPAESRYRVFIVDEAHMVTTAG 120 Query 135 FNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALLARICEQEG 194 FNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLL P TMR LL +IC QE Sbjct 121 FNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLAPSTMRGLLEKICAQEH 180 Query 195 VVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGLLGVTDVALIDDAVD 254 V V+DAVYPLVIRAGGGSPRD+LSVLDQLLAGA + VTY RAL LLGVTDVALID+AVD Sbjct 181 VPVEDAVYPLVIRAGGGSPRDSLSVLDQLLAGAGEEGVTYARALALLGVTDVALIDEAVD 240 Query 255 ALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPDAASRGVVDAPEDAL 314 ALAA D AALFG ++ V+D GHDPRRFA DLLER RDLI++++VPDAA RG+VDAP D L Sbjct 241 ALAANDGAALFGTVDKVMDAGHDPRRFAVDLLERLRDLILMRAVPDAAERGLVDAPGDVL 300 Query 315 DRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLLPSASDAESALLQ 374 DRMRE+A RIG ATL RYAE+V GLGEMRGATAPRLLLEV+CAR+LLPSA+DAESA+LQ Sbjct 301 DRMREEAERIGPATLARYAELVHDGLGEMRGATAPRLLLEVMCARMLLPSATDAESAVLQ 360 Query 375 RVERIE 380 R+ERIE Sbjct 361 RLERIE 366 >gi|257057604|ref|YP_003135436.1| DNA polymerase III, subunit gamma/tau [Saccharomonospora viridis DSM 43017] gi|256587476|gb|ACU98609.1| DNA polymerase III, subunit gamma/tau [Saccharomonospora viridis DSM 43017] Length=690 Score = 610 bits (1573), Expect = 2e-172, Method: Compositional matrix adjust. Identities = 331/569 (59%), Positives = 393/569 (70%), Gaps = 67/569 (11%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PL AL +GRINHAYLFSGPRGCGKTSSARI+ARSLN Sbjct 3 LALYRKYRPATFAEVVGQEHVTEPLRTALASGRINHAYLFSGPRGCGKTSSARIMARSLN 62 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C +GPT +PCG C C +LAP PGS+DV ELDAASHGGVDD RELRDRAFYAP +SRYR Sbjct 63 CVEGPTPDPCGKCGPCEALAPEGPGSVDVTELDAASHGGVDDARELRDRAFYAPAESRYR 122 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFI+DEAHMVT GFNALLKIVEEPPEHLIFIFATTEP+KVL TIRSRTHHYPFRL+PP+ Sbjct 123 VFIIDEAHMVTPQGFNALLKIVEEPPEHLIFIFATTEPDKVLTTIRSRTHHYPFRLIPPK 182 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 MR LL R EG+ V+ AVYPLVIRAGGGS RDT SVLDQLLAGA VTY RA+ L Sbjct 183 AMRELLERNVAAEGIPVEPAVYPLVIRAGGGSARDTQSVLDQLLAGAGPEGVTYERAVAL 242 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTD ALID VDALAA DA +FG I+ + + GHDPRRFA DLL+R RDL++L+SVP+ Sbjct 243 LGVTDSALIDSMVDALAADDAKNVFGTIDRLSEAGHDPRRFAADLLDRLRDLLLLRSVPE 302 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AA+ G+V APE+ L+RM EQA R+ TLTRYAE++ GL +MRGAT+PRL LE++C+R+ Sbjct 303 AATNGMVSAPEEQLERMVEQAQRLSPGTLTRYAEILHNGLLKMRGATSPRLALELLCSRM 362 Query 361 LLPSASDAESALLQRVERIETRLDMSIPA---------------PQAVPRPSAAAAE-PK 404 LLP SD E+++LQR+ER+E R+ PA PQ+ P+ E P Sbjct 363 LLPEVSDDEASMLQRLERLERRIATGAPAVPSAQGGASAESPRTPQSRQSPTRPTFERPS 422 Query 405 HQPARE-PRPVL---------------------------------APTPASSEPT----- 425 + +RE P P + AP+P S PT Sbjct 423 QRASREQPSPDVAERQQQGGAAGAADTGAPTGPRRPTPTAPPGASAPSPTPSAPTGSAQP 482 Query 426 ------------VAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPL 473 A +R WP V VR SR+TE +L GA++ ++E NT+VLTH + PL Sbjct 483 PASSGAQQGGLDAAGLRQHWPQVLAVVRTMSRSTEALLTGASIHSVEGNTVVLTHPAQPL 542 Query 474 ARRLSEQRNADVLAEALKDALGVNWRVRC 502 RRLSEQRN + +A AL + W VRC Sbjct 543 VRRLSEQRNTECIARALTQVVSGEWTVRC 571 >gi|229492523|ref|ZP_04386326.1| DNA polymerase III subunit gamma/tau [Rhodococcus erythropolis SK121] gi|229320509|gb|EEN86327.1| DNA polymerase III subunit gamma/tau [Rhodococcus erythropolis SK121] Length=738 Score = 610 bits (1572), Expect = 3e-172, Method: Compositional matrix adjust. Identities = 305/380 (81%), Positives = 335/380 (89%), Gaps = 0/380 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPASFAEVVGQEHVTAPLS ALD GRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPASFAEVVGQEHVTAPLSTALDTGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPT+ PC VC+SCVSL P G++DV ELDAASHGGVDDTRELRD+AF+AP SRYR Sbjct 61 CEQGPTSTPCNVCDSCVSLGPGGTGNLDVTELDAASHGGVDDTRELRDKAFHAPAASRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFI+DEAHMVT AGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLL P Sbjct 121 VFIIDEAHMVTAAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLAPS 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMR LL +IC QEGV V+ AVYPLVI+AGGGSPRD+LSVLDQLLAGA + VTY RAL L Sbjct 181 TMRGLLEKICAQEGVPVEPAVYPLVIKAGGGSPRDSLSVLDQLLAGAGEEGVTYPRALSL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTDVALID+AVDAL+A D AALFG ++ V+D GHDPRRFA DLLER RDLI++Q+V D Sbjct 241 LGVTDVALIDEAVDALSASDGAALFGTVDRVMDAGHDPRRFALDLLERLRDLILMQAVSD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A+ RG+VDAPE L MREQ R+G ATLTR+AE V AGL EMRGATAPRLLLEV+CAR+ Sbjct 301 ASERGLVDAPEAELVTMREQIQRVGPATLTRFAETVHAGLSEMRGATAPRLLLEVMCARM 360 Query 361 LLPSASDAESALLQRVERIE 380 LLPSASD ESA+LQR+ER+E Sbjct 361 LLPSASDTESAVLQRLERLE 380 Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/213 (31%), Positives = 93/213 (44%), Gaps = 57/213 (26%) Query 419 PASSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLS 478 P S+ PTV +R W T+R+KV R++ ML+ ATV + + +V+ H S L R++ Sbjct 529 PVSAGPTVETLRESWNTLRNKVGERNKVLPAMLSAATVHDVRGHVVVIAHGSPVLGARVT 588 Query 479 EQRNADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGANVATAKAVNPA--------- 529 + NA V+ E L + G W+V + G P A P A AT PA Sbjct 589 QPHNAAVICEVLAEMFGGTWQVEYQEGAPTA---PTVSSATKATEAPSRPAAAPRFSRPS 645 Query 530 -------PTANSTQR-------------------------------------DEEEHMLA 545 P A QR ++E+ M A Sbjct 646 QERAAQQPKAPQPQRGDSDDIPPPEAPDYPEDPGPAPAPEVDYEATPPPATPEDEDEMFA 705 Query 546 EAGR-GDPSPRRDPEEVALELLQNELGARRIDN 577 EA DP+ RRDPE+VA ELL++ LGARR+++ Sbjct 706 EAAEPADPTARRDPEDVAKELLKDVLGARRLES 738 >gi|296141683|ref|YP_003648926.1| DNA polymerase III subunits gamma/tau [Tsukamurella paurometabola DSM 20162] gi|296029817|gb|ADG80587.1| DNA polymerase III, subunits gamma and tau [Tsukamurella paurometabola DSM 20162] Length=737 Score = 608 bits (1567), Expect = 1e-171, Method: Compositional matrix adjust. Identities = 308/438 (71%), Positives = 349/438 (80%), Gaps = 13/438 (2%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PLSVALD+GRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFAEVVGQEHVTEPLSVALDSGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPT+ PCGVC SCV+LAP PG++DV E+DAASHGGVDD RELRDRAFYAP +SRYR Sbjct 61 CEQGPTSTPCGVCNSCVALAPGGPGNLDVTEMDAASHGGVDDARELRDRAFYAPAESRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVT GFNALLKIVEEPPEHLIFIFATTEPEKVL TIRSRTHHYPFRLL P Sbjct 121 VFIVDEAHMVTPQGFNALLKIVEEPPEHLIFIFATTEPEKVLTTIRSRTHHYPFRLLAPN 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 MR LL +I E V V+ VYPLVIRAGGGSPRD+LS++DQLLAGA VTY RALGL Sbjct 181 VMRPLLEKITGAEHVAVEPQVYPLVIRAGGGSPRDSLSIMDQLLAGAGPEGVTYQRALGL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTD ALID AV+AL D AALFGA+E V++ GHDPRRFATDLLERFRDLI+L +VPD Sbjct 241 LGVTDAALIDAAVEALGTGDGAALFGAVERVMEAGHDPRRFATDLLERFRDLILLHTVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AA RG++D P D L+ MR +A ++G ATLTR AEV A L EMRGAT+PRLLLEV+CAR+ Sbjct 301 AADRGLIDVPVDVLETMRTEAGQLGLATLTRCAEVTHASLAEMRGATSPRLLLEVMCARM 360 Query 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPR-PSAAAAEPKHQPAREPRPVLAPTP 419 LLP+A ++++ALLQRVE +E R APQA P+A + QP TP Sbjct 361 LLPAADESQAALLQRVEALERR---PAGAPQAAGSVPTAVSVPAASQPG---------TP 408 Query 420 ASSEPTVAAVRSMWPTVR 437 A + P+ R + P+ R Sbjct 409 APAGPSAGEQRFVRPSQR 426 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/42 (65%), Positives = 31/42 (74%), Gaps = 6/42 (14%) Query 540 EEHMLAEAGR------GDPSPRRDPEEVALELLQNELGARRI 575 EE M+AEA R G +PRRDPEE+ALELL+NELGAR I Sbjct 696 EEEMMAEAAREDAAGGGASAPRRDPEEIALELLKNELGARPI 737 Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/76 (31%), Positives = 38/76 (50%), Gaps = 0/76 (0%) Query 425 TVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNAD 484 +V VR+ WP V V RS+ T ++ V + +TL L L R S+Q++ Sbjct 538 SVDEVRTAWPKVLRAVGERSKVTATLMTNMQVVGVVGDTLHLALAIPALLARFSDQQHVG 597 Query 485 VLAEALKDALGVNWRV 500 L +A+++ G +W V Sbjct 598 NLRDAVREVFGTHWDV 613 >gi|226303865|ref|YP_002763823.1| DNA polymerase III gamma/tau subunit [Rhodococcus erythropolis PR4] gi|226182980|dbj|BAH31084.1| DNA polymerase III gamma/tau subunit [Rhodococcus erythropolis PR4] Length=748 Score = 607 bits (1566), Expect = 1e-171, Method: Compositional matrix adjust. Identities = 305/380 (81%), Positives = 335/380 (89%), Gaps = 0/380 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPASFAEVVGQEHVTAPLS ALD GRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPASFAEVVGQEHVTAPLSTALDTGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPT+ PC VC+SCVSL P G++DV ELDAASHGGVDDTRELRD+AF+AP SRYR Sbjct 61 CEQGPTSTPCDVCDSCVSLGPGGTGNLDVTELDAASHGGVDDTRELRDKAFHAPAASRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFI+DEAHMVT AGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLL P Sbjct 121 VFIIDEAHMVTAAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLAPS 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMR LL +IC QEGV V+ AVYPLVI+AGGGSPRD+LSVLDQLLAGA + VTY RAL L Sbjct 181 TMRGLLEKICAQEGVPVEPAVYPLVIKAGGGSPRDSLSVLDQLLAGAGEEGVTYPRALSL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTDVALID+AVDAL+A D AALFG ++ V+D GHDPRRFA DLLER RDLI++Q+V D Sbjct 241 LGVTDVALIDEAVDALSASDGAALFGTVDRVMDAGHDPRRFALDLLERLRDLILMQAVSD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A+ RG+VDAPE L MREQ R+G ATLTR+AE V AGL EMRGATAPRLLLEV+CAR+ Sbjct 301 ASERGLVDAPEAELVTMREQIQRVGPATLTRFAETVHAGLSEMRGATAPRLLLEVMCARM 360 Query 361 LLPSASDAESALLQRVERIE 380 LLPSASD ESA+LQR+ER+E Sbjct 361 LLPSASDTESAVLQRLERLE 380 Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 63/209 (31%), Positives = 96/209 (46%), Gaps = 53/209 (25%) Query 421 SSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQ 480 S+ PTV +R W T+R+KV R++ ML+ ATV + + +V+ H S L R+++ Sbjct 541 SAGPTVETLRESWNTLRNKVGERNKVLPAMLSAATVHDVRGHVVVIAHGSPVLGARVTQP 600 Query 481 RNADVLAEALKDALGVNWRVRCETG----------------------------------- 505 NA V+ E L + G W+V + G Sbjct 601 HNAAVICEVLAEMFGGTWQVEYQEGAPTAPAASSAPKATEAASRPAAAPRFSRPSQERAA 660 Query 506 -EPAAAASPVGGGANVATAKAVN--------PAPTAN-------STQRDEEEHMLAEAGR 549 +P A S G ++ +A + PAP + +T DE+E M AEA Sbjct 661 QQPKAPQSQRGDSDDIPPPEAPDYPEDPGPAPAPEVDYEATPPPATPEDEDE-MFAEAAE 719 Query 550 -GDPSPRRDPEEVALELLQNELGARRIDN 577 DP+ RRDPE+VA ELL++ LGARR+++ Sbjct 720 PADPTARRDPEDVAKELLKDVLGARRLES 748 >gi|333917896|ref|YP_004491477.1| DNA polymerase III subunits gamma and tau [Amycolicicoccus subflavus DQS3-9A1] gi|333480117|gb|AEF38677.1| DNA polymerase III, subunits gamma and tau [Amycolicicoccus subflavus DQS3-9A1] Length=726 Score = 604 bits (1558), Expect = 1e-170, Method: Compositional matrix adjust. Identities = 291/380 (77%), Positives = 321/380 (85%), Gaps = 0/380 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PLS AL+AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFAEVVGQEHVTEPLSAALNAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C GPTA PCG C SCV+L P PG++DV+ELDAASHGGVDDTRELRDRAFYAP +SRYR Sbjct 61 CEHGPTATPCGTCNSCVALGPGGPGNLDVIELDAASHGGVDDTRELRDRAFYAPAESRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVT AGFNALLKIVEEPPEHLIFIFATTEPEKVLPTI+SRTHHYPFRLLPP Sbjct 121 VFIVDEAHMVTNAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIKSRTHHYPFRLLPPP 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 MR L+ RIC E V V D V+PLVIRAGGGSPRDTLSVLDQL+AGA + V Y RA+ L Sbjct 181 VMRGLVERICASENVHVQDTVFPLVIRAGGGSPRDTLSVLDQLIAGAGEAGVAYDRAVSL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG+TD +LID AVD LA D AALFG I V+D G DPRRF DLLER RDLI++Q+VPD Sbjct 241 LGITDSSLIDAAVDGLANSDGAALFGTINDVMDAGFDPRRFTADLLERIRDLILVQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A + G+VDAP D RM RIG ATL RYAE++ AGL EMRGATAPRLLLEV+CAR+ Sbjct 301 ALTNGLVDAPADGRGRMLSDVERIGPATLARYAELLHAGLSEMRGATAPRLLLEVLCARM 360 Query 361 LLPSASDAESALLQRVERIE 380 LLP+AS +SALLQR+ER+E Sbjct 361 LLPAASATDSALLQRLERLE 380 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/119 (34%), Positives = 63/119 (53%), Gaps = 10/119 (8%) Query 388 PAPQAVPRPSAAAAEPKHQPAREPRPVLA------PTPASSEP----TVAAVRSMWPTVR 437 P +A P P++ A P +P P A P PA S+ +V+ V + W + Sbjct 454 PVVRAAPEPASEAPAPPSRPTEVASPAAADEAQATPAPAESDAHPGLSVSVVEAAWGKIC 513 Query 438 DKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNADVLAEALKDALGV 496 VR +S+ EVML+GA V + N+++L+HE+ L RL E R+A ++ EA ++ LG Sbjct 514 ANVRAKSKIVEVMLSGAKVTGVRGNSIMLSHETPALMGRLREARSAGIVLEAFRETLGT 572 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/69 (45%), Positives = 38/69 (56%), Gaps = 8/69 (11%) Query 516 GGANVATAKAVNPAPTANSTQRDEEEHMLAEAGRG--------DPSPRRDPEEVALELLQ 567 G N AV P D+E+ +L EA R D SPRRDPEE+A+ELL Sbjct 658 GPHNSGPPSAVGQGPVQPVAAPDDEDALLEEARRAEASGIDDSDSSPRRDPEELAIELLT 717 Query 568 NELGARRID 576 +ELGARRI+ Sbjct 718 SELGARRIE 726 >gi|326383531|ref|ZP_08205217.1| DNA polymerase III subunits gamma and tau [Gordonia neofelifaecis NRRL B-59395] gi|326197615|gb|EGD54803.1| DNA polymerase III subunits gamma and tau [Gordonia neofelifaecis NRRL B-59395] Length=790 Score = 591 bits (1524), Expect = 1e-166, Method: Compositional matrix adjust. Identities = 292/382 (77%), Positives = 327/382 (86%), Gaps = 0/382 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYR YRPA+FAEVVGQEHVTAPLS ALD GRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRTYRPATFAEVVGQEHVTAPLSRALDTGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPT+ PCG C SCVSL P PG++DVVELDAASHGGVDDTR+LRDRAFYAP +SRYR Sbjct 61 CEQGPTSTPCGTCSSCVSLGPGGPGNLDVVELDAASHGGVDDTRDLRDRAFYAPAESRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFI+DEAHMV++AGFNALLKIVEEPPEHLIFIFATTEPEKVL TI+SRTHHYPFRLL P Sbjct 121 VFIIDEAHMVSSAGFNALLKIVEEPPEHLIFIFATTEPEKVLTTIKSRTHHYPFRLLAPP 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 MR LL IC +E VVV VYPLVIRAGGGSPRD+LS+LDQLLAGA D VTY RAL L Sbjct 181 VMRGLLEGICAKEHVVVAPEVYPLVIRAGGGSPRDSLSILDQLLAGAGDEGVTYDRALSL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTD ALID AVDAL A D +ALF +E V+D GHDPRRFA DLL+RFRDLI++Q+VPD Sbjct 241 LGVTDSALIDAAVDALGAGDGSALFNVVERVVDAGHDPRRFAIDLLDRFRDLILVQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A RG+V+AP+D L M + AA++G ATLTR+AEV LGEMRG T+PRLLLEV+CARL Sbjct 301 ATERGLVEAPDDQLASMHDAAAKLGPATLTRFAEVAHTALGEMRGTTSPRLLLEVMCARL 360 Query 361 LLPSASDAESALLQRVERIETR 382 LLP+AS ++ALLQR+E +E R Sbjct 361 LLPAASADDAALLQRIEILERR 382 Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/185 (32%), Positives = 79/185 (43%), Gaps = 33/185 (17%) Query 425 TVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNAD 484 TV AV + WP +R VR +S E ML+ A V +E +VL H L RLS+ R Sbjct 606 TVDAVSARWPDIRAAVRKQSTVLEAMLSAAFVHQVEGTQIVLGHPHTALVGRLSDDRGLR 665 Query 485 VLAEALKDALGVNWRVRCETGEPAAA-----------------------ASPVGGGANVA 521 L A+ D G + V +P +A + P GG A A Sbjct 666 ALTAAVVDVFGDGFTVGVVHAQPGSAPAAPSAPAAPAAEQPRRQTYTRPSRPRGGQAAPA 725 Query 522 TAKAVNPAPTANSTQRD----------EEEHMLAEAGRGDPSPRRDPEEVALELLQNELG 571 P P E + M+A+A G P R DP++VALELL++ELG Sbjct 726 ETPDAPPEPPEEPEPAPPVPDEELTDAERDEMVAQAQSGSPDDRLDPDQVALELLKSELG 785 Query 572 ARRID 576 AR ++ Sbjct 786 ARPVE 790 >gi|319950448|ref|ZP_08024362.1| DNA polymerase III subunits gamma and tau [Dietzia cinnamea P4] gi|319435871|gb|EFV91077.1| DNA polymerase III subunits gamma and tau [Dietzia cinnamea P4] Length=414 Score = 591 bits (1523), Expect = 1e-166, Method: Compositional matrix adjust. Identities = 284/381 (75%), Positives = 326/381 (86%), Gaps = 0/381 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPASFAEVVGQEHVT PLSVAL +GRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPASFAEVVGQEHVTEPLSVALSSGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C GPTA PCG C+SCV+LAP G++DV ELDAASHGGVDDTR+LR+RAF+AP SRYR Sbjct 61 CVHGPTATPCGECDSCVALAPGGNGTLDVTELDAASHGGVDDTRDLRERAFFAPASSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 V I+DEAHMVT AGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLL P Sbjct 121 VLIIDEAHMVTNAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLTPS 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 +MR LL RIC+QEGV V+ V+PLVIRAGGGSPRDTLSVLDQL+AGA + +TY RA+ L Sbjct 181 SMRGLLERICDQEGVKVEPTVFPLVIRAGGGSPRDTLSVLDQLMAGAGEEGITYPRAVSL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG T+VALIDD+VDALAA D A LF ++ V++ GHDPRRFA DLL+R RDLI++QSVP Sbjct 241 LGATEVALIDDSVDALAASDGATLFRTVDKVVEAGHDPRRFAADLLQRLRDLIMVQSVPQ 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A RG+VDAP + + MR QA +IG ATL R A++V G+ MRGAT+PRLLLE++CA+L Sbjct 301 AIERGLVDAPVEQAETMRRQAEQIGPATLARCADMVHEGMASMRGATSPRLLLEILCAKL 360 Query 361 LLPSASDAESALLQRVERIET 381 LLPSA D+ +ALLQRVE +E+ Sbjct 361 LLPSADDSMAALLQRVESLES 381 >gi|258650897|ref|YP_003200053.1| DNA polymerase III subunits gamma and tau [Nakamurella multipartita DSM 44233] gi|258554122|gb|ACV77064.1| DNA polymerase III, subunits gamma and tau [Nakamurella multipartita DSM 44233] Length=743 Score = 587 bits (1514), Expect = 2e-165, Method: Compositional matrix adjust. Identities = 287/426 (68%), Positives = 341/426 (81%), Gaps = 13/426 (3%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PL AL AGR+NHAYLFSGPRGCGKTSSARILARSLN Sbjct 3 LALYRKYRPATFAEVVGQEHVTQPLRTALAAGRVNHAYLFSGPRGCGKTSSARILARSLN 62 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C GPT +PCG C SC++LAP PGS+DVVELDAASHGGVDDTR+LRDRAFY P +SRYR Sbjct 63 CVHGPTPDPCGECPSCIALAPEGPGSLDVVELDAASHGGVDDTRDLRDRAFYMPAESRYR 122 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFI+DEAHMVTT GFNALLKIVEEPPEHL+FIFATTEP+KVL TIRSRTHHYPFRL+ P Sbjct 123 VFIIDEAHMVTTQGFNALLKIVEEPPEHLVFIFATTEPDKVLTTIRSRTHHYPFRLIAPS 182 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 +R +L R+CEQEG VV+ AV PLVIRAGGGS RDTLS+LDQLLAGA VTY A+ L Sbjct 183 VLRTMLERLCEQEGAVVEPAVLPLVIRAGGGSARDTLSMLDQLLAGAGPEGVTYRSAVAL 242 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTD AL+D+ VDALAA D ++F A++ VI+ GHDPRRFATDLL+R RDL++L +VPD Sbjct 243 LGVTDAALLDEVVDALAAGDGGSVFAAVDRVIEAGHDPRRFATDLLQRLRDLVILSAVPD 302 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A ++G++DAP D L+ M QA R+G AT TR AEV+ GL +MRG T+PRL+LE++CAR+ Sbjct 303 AGAKGLIDAPSDQLESMSAQADRLGAATATRMAEVLHTGLVDMRGTTSPRLVLELLCARM 362 Query 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAP--T 418 LLP+ +D + ALLQR+ER+E R++++ P EP +P R+P V P Sbjct 363 LLPATADGDGALLQRLERMERRMEIAADEP-----------EPTARPVRQPTAVEIPLAE 411 Query 419 PASSEP 424 PA EP Sbjct 412 PAGPEP 417 Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/169 (44%), Positives = 93/169 (56%), Gaps = 13/169 (7%) Query 416 APTPASSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLAR 475 +PTPAS E V VR WP V KV+ R RTT+++L ATV ALE+ L LT SA LAR Sbjct 579 SPTPAS-EIEVVDVRRNWPEVLAKVQQRRRTTQILLESATVVALENGVLRLTMPSAALAR 637 Query 476 RLSEQRNADVLAEALKDALGVNWRVRCET-GEPAAAASPVGGGANVATAKAVNPAPTANS 534 R+ E NAD+L LK LGV+WR++C+ G A A+ A A P P + Sbjct 638 RVLEPANADLLRAGLKQVLGVDWRIQCDADGPAARPAAAERRPAAAADPWDGAPLPEPPA 697 Query 535 TQRDEEEHMLAEAGRGDPSP-------RRDPEEVALELLQNELGARRID 576 DEE GDP+P RDPE +ALELL +LGAR ++ Sbjct 698 DGPDEE----IPDDYGDPAPPTSGSQAPRDPEAMALELLTTQLGARPLE 742 >gi|68537107|ref|YP_251812.1| DNA polymerase III subunits gamma and tau [Corynebacterium jeikeium K411] gi|68264706|emb|CAI38194.1| DNA polymerase III, gamma and tau subunits [Corynebacterium jeikeium K411] Length=967 Score = 587 bits (1512), Expect = 3e-165, Method: Compositional matrix adjust. Identities = 280/380 (74%), Positives = 324/380 (86%), Gaps = 0/380 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQ HVT PLSVALD+GRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFAEVVGQSHVTEPLSVALDSGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C +GPT+ PCG CESCVSLAP PG++DV ELDAA+H GVDD RELR+RAFYAP +SRYR Sbjct 61 CVEGPTSTPCGKCESCVSLAPGGPGNLDVTELDAATHNGVDDMRELRERAFYAPAESRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFI+DEAHM++TAGFNALLKIVEEPPEHLIFIFATTEPEK+L TIRSRTH+YPFRLL P Sbjct 121 VFIIDEAHMISTAGFNALLKIVEEPPEHLIFIFATTEPEKLLQTIRSRTHNYPFRLLAPP 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 MR LL + EGV V+DAVYPLVIRAGGGSPRD+LS++DQLLAGA VTY RAL L Sbjct 181 DMRGLLESVVSGEGVPVEDAVYPLVIRAGGGSPRDSLSIMDQLLAGAGPEGVTYNRALAL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTD LID AVDALA D+AALF ++ VID G+DPRRF+ DLL+RFRDL+V+Q+VPD Sbjct 241 LGVTDSTLIDRAVDALAEHDSAALFAVVDEVIDAGYDPRRFSEDLLDRFRDLLVVQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A RG+V+APE++ D +REQA ++G+ATLTR A +V GL +MRGATAPRLLLE++CAR+ Sbjct 301 AFERGLVNAPEESRDVLREQAEKMGQATLTRCASLVNEGLAQMRGATAPRLLLEILCARM 360 Query 361 LLPSASDAESALLQRVERIE 380 LP+A AL QRVE +E Sbjct 361 ALPAAGMTVEALAQRVEALE 380 Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust. Identities = 27/95 (29%), Positives = 46/95 (49%), Gaps = 7/95 (7%) Query 433 WPTVRDKVRLRSRTTEVMLAGATVRALED--NTLVLTHESAPLARRLSEQRNADVLAEAL 490 W + D V + + L GA+ RA + + + H + LAR +S +NA+V ++A+ Sbjct 594 WARIMDAVHGLDLSAWIALRGASPRAAQPIPGEVHVDHHTGSLARLVSGPKNAEVYSQAI 653 Query 491 KDALGVNWRVRCETGEPAAAASPVGGGANVATAKA 525 +D G R+ G+ A +G GA +T A Sbjct 654 QDVTGSPARIVVYVGDEA-----IGAGATESTGSA 683 >gi|334564444|ref|ZP_08517435.1| DNA polymerase III subunits gamma and tau [Corynebacterium bovis DSM 20582] Length=415 Score = 585 bits (1507), Expect = 1e-164, Method: Compositional matrix adjust. Identities = 282/381 (75%), Positives = 326/381 (86%), Gaps = 0/381 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPASFAEVVGQEHVT PLS ALD+GRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPASFAEVVGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C +GPT+ PCGVC+SCV+LAP PG++DV ELDAA+H GVDD RELRDRAFYAP +SRYR Sbjct 61 CVEGPTSTPCGVCDSCVALAPGGPGTLDVTELDAATHNGVDDMRELRDRAFYAPAESRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFI+DEAHM+++AGFNALLKIVEEPPEHLIFIFATTEPEK+L TIRSRTH+YPFRLL P Sbjct 121 VFIIDEAHMISSAGFNALLKIVEEPPEHLIFIFATTEPEKLLATIRSRTHNYPFRLLTPP 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 MR LL ++C +EGV+V+DAVYPLVIRAGGGSPRD+LS++DQLLAGA VTYTRAL L Sbjct 181 AMRGLLEKVCGEEGVIVEDAVYPLVIRAGGGSPRDSLSIMDQLLAGAGPEGVTYTRALAL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTD ALID AVDALA D AALF + VID G+DPRRFATDLL+RFRDL+V+Q+VPD Sbjct 241 LGVTDSALIDRAVDALAGHDQAALFRCVNEVIDAGYDPRRFATDLLDRFRDLLVVQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A +G+VDAP D + EQA +G+ATLTR A +V GL +MRGATAPRLLLE++CAR+ Sbjct 301 AFEQGLVDAPADQRQILSEQAQDLGQATLTRCAALVNEGLEQMRGATAPRLLLEILCARM 360 Query 361 LLPSASDAESALLQRVERIET 381 LP+A AL QR+E +E+ Sbjct 361 ALPAAGTTVEALAQRIEALES 381 >gi|340795478|ref|YP_004760941.1| DNA polymerase III gamma and tau subunit [Corynebacterium variabile DSM 44702] gi|340535388|gb|AEK37868.1| DNA polymerase III gamma and tau subunit [Corynebacterium variabile DSM 44702] Length=893 Score = 583 bits (1504), Expect = 2e-164, Method: Compositional matrix adjust. Identities = 279/381 (74%), Positives = 321/381 (85%), Gaps = 0/381 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 VALYRKYRPA+FAEVVGQEHVT PL +LD+GRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 20 VALYRKYRPATFAEVVGQEHVTEPLCTSLDSGRINHAYLFSGPRGCGKTSSARILARSLN 79 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C +GPT+ PCGVC+SCV+LAP PG++DV ELDAA+H GVDD RELRDRAFYAP +SRYR Sbjct 80 CVKGPTSTPCGVCDSCVALAPGGPGTLDVTELDAATHNGVDDMRELRDRAFYAPAESRYR 139 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFI+DEAHM+++AGFNALLKIVEEPPEHLIFIFATTEPEK+L TIRSRTH+YPFRLL P Sbjct 140 VFIIDEAHMISSAGFNALLKIVEEPPEHLIFIFATTEPEKLLQTIRSRTHNYPFRLLTPP 199 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 MR LL+++CE EGVVV+DAVYPLVIRAGGGSPRD+LS+LDQLLAGA VTY RA+ L Sbjct 200 AMRGLLSKVCEDEGVVVEDAVYPLVIRAGGGSPRDSLSILDQLLAGAGPEGVTYKRAVAL 259 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTD LID AVDAL+ D A LF I VID GHDPRRFATDLL+RFRDL+V+QSVP+ Sbjct 260 LGVTDSTLIDRAVDALSVADQAGLFSVISDVIDAGHDPRRFATDLLDRFRDLLVVQSVPE 319 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A G+VDAP D D + QA +G ATLTR A +V GL +MRGAT+PRLLLE++CAR+ Sbjct 320 AFDTGLVDAPVDERDVLARQAGELGTATLTRCAALVNEGLMQMRGATSPRLLLEILCARM 379 Query 361 LLPSASDAESALLQRVERIET 381 LP+A AL QR+E +E+ Sbjct 380 ALPAAGMTVEALAQRIEALES 400 >gi|256374358|ref|YP_003098018.1| DNA polymerase III subunits gamma/tau [Actinosynnema mirum DSM 43827] gi|255918661|gb|ACU34172.1| DNA polymerase III, subunits gamma and tau [Actinosynnema mirum DSM 43827] Length=713 Score = 582 bits (1499), Expect = 7e-164, Method: Compositional matrix adjust. Identities = 288/380 (76%), Positives = 331/380 (88%), Gaps = 0/380 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEV+GQEHVT PL +AL AGR+NHAYLFSGPRGCGKTSSARILARSLN Sbjct 7 LALYRKYRPATFAEVIGQEHVTDPLRIALGAGRVNHAYLFSGPRGCGKTSSARILARSLN 66 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 CA+GPT +PCG C SCV LAPN PGS+DVVELDAASHGGVDDTRELR++AFYAP +++YR Sbjct 67 CAKGPTPDPCGECNSCVGLAPNGPGSVDVVELDAASHGGVDDTRELREKAFYAPAEAKYR 126 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFI+DEAHMVTT GFNALLKIVEEPPEHLIFIFATTEP+KVLPTIRSRTHHYPFRL+PP Sbjct 127 VFIIDEAHMVTTQGFNALLKIVEEPPEHLIFIFATTEPDKVLPTIRSRTHHYPFRLIPPV 186 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 +MRALL R C EGV V+ +V+PLVIRAGGGS RDT SV+DQLL+GA V Y RA+ L Sbjct 187 SMRALLERNCAAEGVAVEPSVFPLVIRAGGGSARDTQSVMDQLLSGAGPEGVRYDRAIAL 246 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTDVALIDD V+ LAA D +A+FG ++ ++D GHDPRRFATDLL+R RDL++L +VPD Sbjct 247 LGVTDVALIDDVVEGLAAGDGSAVFGTVDRLVDAGHDPRRFATDLLDRLRDLVLLCAVPD 306 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A RG+V APED L +M QA IG ATLTRYAEV+ GL +MRGATAPRLLLE++CAR+ Sbjct 307 AGERGLVSAPEDVLAKMIPQAQNIGPATLTRYAEVLHQGLTDMRGATAPRLLLELLCARM 366 Query 361 LLPSASDAESALLQRVERIE 380 LLPS SDAESA+LQRVER+E Sbjct 367 LLPSVSDAESAVLQRVERLE 386 Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/190 (37%), Positives = 92/190 (49%), Gaps = 46/190 (24%) Query 429 VRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNADVLAE 488 +R WP + V+ SR+TE ML ATV ++ ++ LTH S PLARRL+EQRNA+V+A+ Sbjct 521 IRRRWPELLGVVKGASRSTEAMLTNATVAEVDGTSVTLTHTSGPLARRLAEQRNAEVIAK 580 Query 489 ALKDALGVNWRVRCETGEPAAA---------------------ASPVGGGANVATAKAVN 527 A LG +W+VRC G+ A A ++P G KA+ Sbjct 581 AFGQVLGGSWQVRCVQGDAATAQRPQQQSRQARPAPARPSQAESAPAPGHGRQMLEKAMQ 640 Query 528 PAPTANSTQRD----------------------EEEHMLAEAGR-GDPSPRR-DPEEVAL 563 A ST R +EE M AEA R G+P R DPE V L Sbjct 641 -AQANRSTGRAGDDIPLPPEPDEPDDPLPPEPVDEEEMFAEAARPGEPGEERLDPEAVVL 699 Query 564 ELLQNELGAR 573 +LL +ELGAR Sbjct 700 KLLADELGAR 709 >gi|172041592|ref|YP_001801306.1| DNA polymerase III subunits gamma and tau [Corynebacterium urealyticum DSM 7109] gi|171852896|emb|CAQ05872.1| DNA polymerase III, gamma and tau subunits [Corynebacterium urealyticum DSM 7109] Length=1102 Score = 582 bits (1499), Expect = 9e-164, Method: Compositional matrix adjust. Identities = 275/380 (73%), Positives = 316/380 (84%), Gaps = 0/380 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPASFAEVVGQEHVT PLSVALD+GRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPASFAEVVGQEHVTEPLSVALDSGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C +GPT+ PCG C+SC++LAP PGS+DV ELDAASH GVDD RELRDRAFYAP SRYR Sbjct 61 CVEGPTSTPCGKCDSCIALAPGGPGSLDVTELDAASHRGVDDMRELRDRAFYAPADSRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFI+DEAHM+TT GFN LLKIVEEPPEHLIFIFATTEPEK+L TIRSRTH+YPFRLL P Sbjct 121 VFIIDEAHMITTEGFNTLLKIVEEPPEHLIFIFATTEPEKLLATIRSRTHNYPFRLLTPP 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 MR LL RI EG VV+DAVYPLV+RAGGGSPRD+LS++DQLLAGA VTY RA+ L Sbjct 181 DMRGLLGRIVADEGAVVEDAVYPLVVRAGGGSPRDSLSIMDQLLAGAGPEGVTYQRAVAL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTD +L+D + +ALAA D A LF ++ VI+ G+DPRRFA DLL+RFRDL+V+Q+VPD Sbjct 241 LGVTDSSLLDRSAEALAAQDQAGLFAVVDDVINAGYDPRRFAMDLLDRFRDLLVVQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A RG+VD P D +R+QA +G ATLTR A VV GL +MRGAT+PRLLLE++CAR+ Sbjct 301 AFERGLVDVPAQEQDALRQQAEALGPATLTRCAAVVNDGLSQMRGATSPRLLLEILCARM 360 Query 361 LLPSASDAESALLQRVERIE 380 LP+A AL QRVE +E Sbjct 361 ALPAAGMTVEALAQRVEALE 380 >gi|237784776|ref|YP_002905481.1| DNA polymerase III subunits gamma and tau [Corynebacterium kroppenstedtii DSM 44385] gi|237757688|gb|ACR16938.1| DNA polymerase III, gamma and tau subunit [Corynebacterium kroppenstedtii DSM 44385] Length=990 Score = 575 bits (1482), Expect = 8e-162, Method: Compositional matrix adjust. Identities = 270/381 (71%), Positives = 318/381 (84%), Gaps = 0/381 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FA+VVGQEHVT PLS ALDAGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 1 MALYRKYRPATFADVVGQEHVTVPLSRALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C GPT+ PCG CESC +LAP PGS+DV ELDAASH GV+D R+LRDRA YAP +SRYR Sbjct 61 CVHGPTSTPCGECESCRALAPGGPGSLDVTELDAASHRGVEDMRDLRDRAIYAPAESRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFI+DEAHM+T GFNALLKIVEEPPEHL+FIFATTEPEKVL TI+SRTH YPFRLL P Sbjct 121 VFIIDEAHMITKEGFNALLKIVEEPPEHLVFIFATTEPEKVLTTIKSRTHQYPFRLLAPN 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 MR LL RIC +E V V+D+VYPLVIRAGGGSPRD+LSVLDQLLAGA + +TY A G+ Sbjct 181 DMRGLLERICSEEKVQVEDSVYPLVIRAGGGSPRDSLSVLDQLLAGADENGITYAHAAGV 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG+TD ALID AV+++A D A LF I +V+D GHDPRRFATDL++RFRDL+VLQS+PD Sbjct 241 LGITDSALIDAAVESVANNDPAGLFTTINNVLDAGHDPRRFATDLVDRFRDLLVLQSIPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A +G+VDAP D + + ++A +G ATLTR A VV GL E++GAT+PRLLLE++CAR+ Sbjct 301 AFDQGLVDAPLDQRETLADEAQSLGPATLTRCAAVVSDGLNELKGATSPRLLLEIMCARM 360 Query 361 LLPSASDAESALLQRVERIET 381 ++P A+D AL QRVE +E+ Sbjct 361 VMPGAADGIEALSQRVEALES 381 Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust. Identities = 26/86 (31%), Positives = 43/86 (50%), Gaps = 0/86 (0%) Query 425 TVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNAD 484 T +R W ++ V RS+ +VM++ A + + N +VL H + LA+RL++Q Sbjct 660 TADGLRPQWTQIKQAVGKRSKVAQVMVSEAVILGVFRNHVVLGHHTGALAQRLNDQHINT 719 Query 485 VLAEALKDALGVNWRVRCETGEPAAA 510 + +A+ DA G V G AA Sbjct 720 SIVDAITDATGQTVTVEAVIGTDDAA 745 >gi|134096866|ref|YP_001102527.1| putative DNA polymerase III gamma subunit [Saccharopolyspora erythraea NRRL 2338] gi|133909489|emb|CAL99601.1| putative DNA polymerase III gamma subunit [Saccharopolyspora erythraea NRRL 2338] Length=816 Score = 572 bits (1475), Expect = 4e-161, Method: Compositional matrix adjust. Identities = 293/409 (72%), Positives = 346/409 (85%), Gaps = 10/409 (2%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PL AL +GRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 3 LALYRKYRPATFAEVVGQEHVTEPLRTALASGRINHAYLFSGPRGCGKTSSARILARSLN 62 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 CAQGPTA+PCG C+SCV+LAP GS+DVVELDAASHGGVDDTRELRDRAF+AP QSRYR Sbjct 63 CAQGPTADPCGECDSCVALAPEGGGSVDVVELDAASHGGVDDTRELRDRAFFAPAQSRYR 122 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 +FI+DEAHMVTT GFNALLKIVEEPPEHLIF+FATTEP+KVL TIRSRTHHYPFRL+PP Sbjct 123 IFIIDEAHMVTTQGFNALLKIVEEPPEHLIFVFATTEPDKVLTTIRSRTHHYPFRLMPPG 182 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 MR LL RIC+QE V V+ AVYPLV+RAGGGS RDTLSVLDQLLAGA + VTY RA+ L Sbjct 183 VMRELLERICDQESVRVEPAVYPLVLRAGGGSARDTLSVLDQLLAGAGEEGVTYERAVAL 242 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTDVALIDD VDA+AA D AA++G ++ +++ GHDPRRFA+DLL+R RDL++L +VPD Sbjct 243 LGVTDVALIDDMVDAMAAADGAAVYGTVDRLVEAGHDPRRFASDLLDRLRDLVLLNAVPD 302 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A RG++ A D L +M++QA ++G ATL+R+AE+V GL +MRGATAPRLLLE++CAR+ Sbjct 303 ADQRGLIQASGDELTKMQQQAEQLGAATLSRFAEIVHTGLADMRGATAPRLLLELLCARM 362 Query 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAE-PKHQPA 408 +LP+ SD+E ALLQR+ER+E R+ ++ P AAE P QPA Sbjct 363 MLPTVSDSEVALLQRLERVERRMTIA---------PEGGAAEAPAGQPA 402 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/77 (37%), Positives = 46/77 (60%), Gaps = 0/77 (0%) Query 426 VAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNADV 485 A VR +W V V R+R T+ +L ATV+ ++ TLVL+ ++ L ++ ++QR D Sbjct 583 TADVRRLWTEVLRAVAERNRPTQALLLNATVQDIQSGTLVLSMPTSGLVKQFAQQRRLDF 642 Query 486 LAEALKDALGVNWRVRC 502 + +AL+ LG W +RC Sbjct 643 VKDALRAVLGGEWEIRC 659 >gi|300857562|ref|YP_003782545.1| DNA polymerase III subunit gamma and tau [Corynebacterium pseudotuberculosis FRC41] gi|300685016|gb|ADK27938.1| DNA polymerase III gamma and tau subunit [Corynebacterium pseudotuberculosis FRC41] gi|302205302|gb|ADL09644.1| DNA polymerase III subunit gamma/tau [Corynebacterium pseudotuberculosis C231] gi|302329856|gb|ADL20050.1| DNA polymerase III subunit gamma/tau [Corynebacterium pseudotuberculosis 1002] gi|308275542|gb|ADO25441.1| DNA polymerase III subunits gamma and tau [Corynebacterium pseudotuberculosis I19] gi|341823968|gb|AEK91489.1| DNA polymerase III subunit gamma/tau [Corynebacterium pseudotuberculosis PAT10] Length=849 Score = 572 bits (1473), Expect = 8e-161, Method: Compositional matrix adjust. Identities = 314/617 (51%), Positives = 394/617 (64%), Gaps = 80/617 (12%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPASFAEVVGQE VT PLSVALD+GRINHAYLFSGPRGCGKTSSARI+ARSLN Sbjct 1 MALYRKYRPASFAEVVGQEQVTQPLSVALDSGRINHAYLFSGPRGCGKTSSARIMARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C +GPT+ PCG C SC+SLAPN PG++DV ELDAAS+ VDD RELRDRA YAP +SRYR Sbjct 61 CVEGPTSTPCGKCNSCISLAPNGPGNLDVTELDAASNNSVDDMRELRDRAMYAPAESRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 +FI+DEAHMVTT G NALLKIVEEPPEHLIFIFATTEPEKV+ TIRSRTHHYPFRLL P+ Sbjct 121 IFIIDEAHMVTTQGANALLKIVEEPPEHLIFIFATTEPEKVIGTIRSRTHHYPFRLLTPQ 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 +MR LL EG +V+D+VYP+VIRAGGGSPRDTLSVLDQLLAG + Y A L Sbjct 181 SMRGLLENTVASEGALVEDSVYPMVIRAGGGSPRDTLSVLDQLLAGTGPQGLNYETARLL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG TD ALID AV AL++ D AALF I++ ++ G DPRRFATDLL+R RDL+VLQSVPD Sbjct 241 LGATDDALIDAAVTALSSHDKAALFTTIDAAVEAGLDPRRFATDLLDRLRDLMVLQSVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A G+VDAP D + +R QAA + + + A +V GL ++GAT+PRLLLE++CA++ Sbjct 301 AFELGLVDAPTDRAEVLRAQAADFNQGEVAQLAALVNDGLRSLKGATSPRLLLEILCAKM 360 Query 361 LLPSA-----------------------SDAESALLQRVERIETRL-------------- 383 LLPSA + +A+ + ER R+ Sbjct 361 LLPSAPTGVALTPPPGNAQPSGLPTGGQAAGPAAIPAKYERKSIRMAREAAQRKAAQEEA 420 Query 384 ----DMSIPAPQAVPRPSAAAAE---------PKHQPAREPRPVLAPTPASSEPT----- 425 + APQA P+A + + PK Q A +P P P+ +++ P+ Sbjct 421 AQREALQHEAPQAKAEPAAPSDKQASLKKQEVPKEQVAEKPLPAPEPSGSTTPPSDEAER 480 Query 426 -------------VAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAP 472 A VR+ W +R V +S ++LA + V + + L+L H + P Sbjct 481 VAEGASISNDDAFAADVRARWEALRKMVHKKSAVAGILLAESRVLGMREGALILGHNTGP 540 Query 473 LARRLSEQRNADVLAEALKDALGVNWRVRCETG-EPAAAASPVGGGANVATAKAVNPAP- 530 LA+RL++ +N D++ E ++ LG V C G +PAAA G + KA NP P Sbjct 541 LAQRLNDAKNNDIIVEVIRAELGREVAVNCVVGTDPAAA-----GFSEPKPEKAWNPEPA 595 Query 531 -----TANSTQRDEEEH 542 T S+ D+E+ Sbjct 596 VSEPVTPESSVDDQEKQ 612 >gi|291005087|ref|ZP_06563060.1| putative DNA polymerase III gamma subunit [Saccharopolyspora erythraea NRRL 2338] Length=529 Score = 571 bits (1471), Expect = 1e-160, Method: Compositional matrix adjust. Identities = 293/409 (72%), Positives = 346/409 (85%), Gaps = 10/409 (2%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA+FAEVVGQEHVT PL AL +GRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 3 LALYRKYRPATFAEVVGQEHVTEPLRTALASGRINHAYLFSGPRGCGKTSSARILARSLN 62 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 CAQGPTA+PCG C+SCV+LAP GS+DVVELDAASHGGVDDTRELRDRAF+AP QSRYR Sbjct 63 CAQGPTADPCGECDSCVALAPEGGGSVDVVELDAASHGGVDDTRELRDRAFFAPAQSRYR 122 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 +FI+DEAHMVTT GFNALLKIVEEPPEHLIF+FATTEP+KVL TIRSRTHHYPFRL+PP Sbjct 123 IFIIDEAHMVTTQGFNALLKIVEEPPEHLIFVFATTEPDKVLTTIRSRTHHYPFRLMPPG 182 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 MR LL RIC+QE V V+ AVYPLV+RAGGGS RDTLSVLDQLLAGA + VTY RA+ L Sbjct 183 VMRELLERICDQESVRVEPAVYPLVLRAGGGSARDTLSVLDQLLAGAGEEGVTYERAVAL 242 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTDVALIDD VDA+AA D AA++G ++ +++ GHDPRRFA+DLL+R RDL++L +VPD Sbjct 243 LGVTDVALIDDMVDAMAAADGAAVYGTVDRLVEAGHDPRRFASDLLDRLRDLVLLNAVPD 302 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A RG++ A D L +M++QA ++G ATL+R+AE+V GL +MRGATAPRLLLE++CAR+ Sbjct 303 ADQRGLIQASGDELTKMQQQAEQLGAATLSRFAEIVHTGLADMRGATAPRLLLELLCARM 362 Query 361 LLPSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAE-PKHQPA 408 +LP+ SD+E ALLQR+ER+E R+ ++ P AAE P QPA Sbjct 363 MLPTVSDSEVALLQRLERVERRMTIA---------PEGGAAEAPAGQPA 402 >gi|331694235|ref|YP_004330474.1| DNA polymerase III subunits gamma and tau [Pseudonocardia dioxanivorans CB1190] gi|326948924|gb|AEA22621.1| DNA polymerase III, subunits gamma and tau [Pseudonocardia dioxanivorans CB1190] Length=829 Score = 568 bits (1463), Expect = 1e-159, Method: Compositional matrix adjust. Identities = 282/369 (77%), Positives = 323/369 (88%), Gaps = 0/369 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA FAEVVGQEHVT PL VAL AGRINHAYLFSGPRGCGKTSSARILARSLN Sbjct 13 LALYRKYRPAKFAEVVGQEHVTEPLGVALTAGRINHAYLFSGPRGCGKTSSARILARSLN 72 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C GPT +PCGVC SC++LAP PGSIDVVELDAASHGGVDD RELRDRAFYAP +SRYR Sbjct 73 CELGPTPDPCGVCPSCIALAPEGPGSIDVVELDAASHGGVDDARELRDRAFYAPAESRYR 132 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VFIVDEAHMVTT GFNALLKIVEEPP+HL+FIFATTEPEKVLPTIRSRTHHYPFRL+PP Sbjct 133 VFIVDEAHMVTTQGFNALLKIVEEPPDHLVFIFATTEPEKVLPTIRSRTHHYPFRLIPPG 192 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 T+RALL RIC +EGV V AVYPLVIRAGGGS RDTLSVLDQLLAGA + VTY RA+ L Sbjct 193 TLRALLERICAEEGVTVAPAVYPLVIRAGGGSARDTLSVLDQLLAGAGEEGVTYERAVAL 252 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTDVAL+DD VD LAA D+AA++ A++ +++ GHDPRRFA DL++R RDL++LQ+VPD Sbjct 253 LGVTDVALVDDVVDGLAAGDSAAVYEAVDRLVEAGHDPRRFAADLMQRLRDLMLLQAVPD 312 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AA +G+V+A +D + RM EQA +IG ATL RY ++V GL EMRGATAPRLLLE++CAR+ Sbjct 313 AAGQGIVEAADDEISRMMEQAGKIGPATLARYGDIVHTGLTEMRGATAPRLLLELLCARM 372 Query 361 LLPSASDAE 369 LLP+A+ ++ Sbjct 373 LLPAATTSD 381 Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 81/224 (37%), Positives = 100/224 (45%), Gaps = 43/224 (19%) Query 388 PAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPASSEPTVAAVRSMWPTVRDKVRLRSRTT 447 P QA P+ +EP PA P P P S AAVR +WP + + R T Sbjct 612 PTAQAPTAPAPTGSEP---PAPAPTGSEPPAPMSRGIDAAAVRRVWPEILSATKQRKMRT 668 Query 448 EVMLAGATVRALEDNTLVLTHESAPLARRLSEQRNADVLAEALKDALGVNWRVRCETG-- 505 +L ATVR + D+TLVL +A LAR LSEQ N D++A+AL LGV WRVRCE G Sbjct 669 HALLVTATVRTVADDTLVLAAGTAALARLLSEQSNLDIIADALNAVLGVRWRVRCEFGDA 728 Query 506 -----------EPAAAASPVGGGANVATAKAVNPAPTANSTQRDEEEHMLAE-------- 546 EPA G + A AP + D+ + E Sbjct 729 APPAQAAPQRREPAVPP----GRRDQGRPSAERGAPPRRRSAPDDGIPLPPEPPSDEAPP 784 Query 547 --------------AGRGDPSPRRDPEEVALELLQNELGARRID 576 +G G P RRDPEE A+ELL ELGA+ ID Sbjct 785 EDDEEAMMAEAAADSGNG-PVERRDPEEAAIELLAAELGAKAID 827 >gi|324998990|ref|ZP_08120102.1| DNA polymerase III subunits gamma and tau [Pseudonocardia sp. P1] Length=385 Score = 567 bits (1462), Expect = 2e-159, Method: Compositional matrix adjust. Identities = 285/382 (75%), Positives = 330/382 (87%), Gaps = 0/382 (0%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPA A+VVGQEHVT PL+ AL AGR+NHAYLFSGPRGCGKTSSARILARSLN Sbjct 3 LALYRKYRPAKLADVVGQEHVTEPLATALSAGRVNHAYLFSGPRGCGKTSSARILARSLN 62 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C QGPT +PCG C SCVSLAP PG+IDV+ELDAASHGGV+D RELRDRAFYAP +SRYR Sbjct 63 CVQGPTPDPCGECGSCVSLAPEGPGNIDVIELDAASHGGVEDARELRDRAFYAPAESRYR 122 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 VF+VDEAHMVTT GFNALLKIVEEPPEHL+F+FATTEP+KVLPTIRSRTHHYPFRL+PP Sbjct 123 VFVVDEAHMVTTQGFNALLKIVEEPPEHLVFVFATTEPDKVLPTIRSRTHHYPFRLIPPG 182 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 TMR+LL RIC E V V V+PLVIRAGGGS RDTLSVLDQLLAGA D VTY RA+ L Sbjct 183 TMRSLLERICGDEEVTVAPPVFPLVIRAGGGSARDTLSVLDQLLAGAGDGGVTYERAVAL 242 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LGVTD LIDDAVDALAA D AA++GA++ +++ GHDPRRFA+DLL+RFRDL+++Q VPD Sbjct 243 LGVTDSGLIDDAVDALAAADGAAVYGAVDRLVEAGHDPRRFASDLLQRFRDLMLVQVVPD 302 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 AA +G+VD ED L RM +QAAR+G A LTRY E++ GL +MRGATAPRLLLE++CAR+ Sbjct 303 AAEQGLVDGAEDELSRMADQAARLGPAALTRYGEILHQGLIDMRGATAPRLLLELLCARM 362 Query 361 LLPSASDAESALLQRVERIETR 382 LLP+A+ ++ LL+R+ERIE R Sbjct 363 LLPAATTSDGGLLERLERIERR 384 >gi|337289808|ref|YP_004628829.1| DNA polymerase III subunit gamma and tau [Corynebacterium ulcerans BR-AD22] gi|334698114|gb|AEG82910.1| DNA polymerase III gamma and tau subunit [Corynebacterium ulcerans BR-AD22] Length=900 Score = 565 bits (1456), Expect = 8e-159, Method: Compositional matrix adjust. Identities = 317/609 (53%), Positives = 383/609 (63%), Gaps = 81/609 (13%) Query 1 VALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 +ALYRKYRPASFAEVVGQE VT PLSVALD+GRINHAYLFSGPRGCGKTSSARI+ARSLN Sbjct 1 MALYRKYRPASFAEVVGQEQVTQPLSVALDSGRINHAYLFSGPRGCGKTSSARIMARSLN 60 Query 61 CAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYR 120 C +GPT+ PCG C SC+SLAPN PG++DV ELDAAS+ VDD RELRDRA YAP +SRYR Sbjct 61 CVEGPTSTPCGKCNSCISLAPNGPGNLDVTELDAASNNSVDDMRELRDRAMYAPAESRYR 120 Query 121 VFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180 +FI+DEAHMVTT G NALLKIVEEPPEHLIFIFATTEPEKV+ TIRSRTHHYPFRLL P+ Sbjct 121 IFIIDEAHMVTTQGANALLKIVEEPPEHLIFIFATTEPEKVIGTIRSRTHHYPFRLLTPQ 180 Query 181 TMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGL 240 +MR LL EG +V+D+VYP+VIRAGGGSPRDTLSVLDQLLAG ++Y A L Sbjct 181 SMRGLLETTVASEGALVEDSVYPMVIRAGGGSPRDTLSVLDQLLAGTGPQGLSYETARLL 240 Query 241 LGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPD 300 LG TD ALID A+ AL++ D AALF I+S ++ G DPRRFATDLL+R RDL+VLQ+VPD Sbjct 241 LGATDDALIDAAITALSSQDKAALFTTIDSAVEAGLDPRRFATDLLDRLRDLMVLQAVPD 300 Query 301 AASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 A G+VDAP D D MR QAA + + A +V GL ++GAT+PRLLLE++CA++ Sbjct 301 AFELGLVDAPTDRADVMRAQAADFHQGEVAHLAALVNDGLRGLKGATSPRLLLEILCAKM 360 Query 361 LLPSA------------------------SDAESALLQRVERIETRL------------- 383 LLPSA S A +A+ + ER R+ Sbjct 361 LLPSAPASAALTPPPGNAQPAGLPAGGQPSGAPAAIPAKYERKSVRMAREAAQRKAAQEE 420 Query 384 ---------DMSIPAPQAVPRPSAAAAEP---KHQPAREPRPVLA----PTPASSEPTVA 427 + P P A A+A EP K A +P A P P PTVA Sbjct 421 AAQREAVQQETPQPRPVAQAEKQASAPEPESRKEHAAEKPETPSAEKATPAPELQTPTVA 480 Query 428 A----------------------VRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLV 465 VR+ W T+R V +S ++LA + V + + TLV Sbjct 481 PSDDGETAAEGASISNDDAFVADVRARWSTLRKMVHKKSAVAGILLAESCVLGMREGTLV 540 Query 466 LTHESAPLARRLSEQRNADVLAEALKDALGVNWRVRCETGEPAAAASPVGGGANVATA-K 524 L H + PLA+ L+ +N DV+ E ++ LG + V C G PV G + A K Sbjct 541 LGHNTGPLAQGLNLAKNNDVIVEVIRAELGRDVTVDCIVG-----TDPVAAGFSEPPAEK 595 Query 525 AVNPAPTAN 533 A P P A+ Sbjct 596 AWTPEPAAS 604 Lambda K H 0.318 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1304013394374 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40