BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3730c Length=346 Score E Sequences producing significant alignments: (Bits) Value gi|254366276|ref|ZP_04982320.1| conserved hypothetical protein [... 704 0.0 gi|308372724|ref|ZP_07429631.2| hypothetical protein TMEG_00226 ... 703 0.0 gi|15610866|ref|NP_218247.1| hypothetical protein Rv3730c [Mycob... 703 0.0 gi|289747570|ref|ZP_06506948.1| conserved hypothetical protein [... 701 0.0 gi|289445329|ref|ZP_06435073.1| conserved hypothetical protein [... 701 0.0 gi|289748250|ref|ZP_06507628.1| conserved hypothetical protein [... 701 0.0 gi|340628704|ref|YP_004747156.1| hypothetical protein MCAN_37521... 700 0.0 gi|41406438|ref|NP_959274.1| hypothetical protein MAP0340c [Myco... 617 7e-175 gi|240171064|ref|ZP_04749723.1| hypothetical protein MkanA1_1726... 617 1e-174 gi|254818489|ref|ZP_05223490.1| hypothetical protein MintA_01124... 616 1e-174 gi|336459742|gb|EGO38662.1| DNA polymerase LigD [Mycobacterium a... 616 2e-174 gi|118466411|ref|YP_879649.1| DNA polymerase LigD polymerase sub... 616 2e-174 gi|296166842|ref|ZP_06849259.1| DNA polymerase LigD [Mycobacteri... 610 1e-172 gi|183985233|ref|YP_001853524.1| hypothetical protein MMAR_5265 ... 610 1e-172 gi|118619482|ref|YP_907814.1| hypothetical protein MUL_4339 [Myc... 610 2e-172 gi|342859959|ref|ZP_08716611.1| hypothetical protein MCOL_13805 ... 602 2e-170 gi|118468272|ref|YP_890519.1| DNA polymerase LigD polymerase sub... 573 2e-161 gi|120406485|ref|YP_956314.1| hypothetical protein Mvan_5542 [My... 546 2e-153 gi|108801878|ref|YP_642075.1| hypothetical protein Mmcs_4915 [My... 546 2e-153 gi|126437846|ref|YP_001073537.1| DNA primase, small subunit [Myc... 545 3e-153 gi|145221866|ref|YP_001132544.1| DNA primase, small subunit [Myc... 539 3e-151 gi|333992662|ref|YP_004525276.1| hypothetical protein JDM601_402... 529 2e-148 gi|111022075|ref|YP_705047.1| DNA ligase (ATP), N-terminal [Rhod... 504 8e-141 gi|226364579|ref|YP_002782361.1| hypothetical protein ROP_51690 ... 501 1e-139 gi|312141558|ref|YP_004008894.1| hypothetical protein REQ_42490 ... 484 1e-134 gi|325677224|ref|ZP_08156890.1| DNA polymerase LigD [Rhodococcus... 483 1e-134 gi|169627385|ref|YP_001701034.1| hypothetical protein MAB_0280 [... 479 3e-133 gi|229488888|ref|ZP_04382754.1| DNA polymerase LigD, polymerase ... 467 1e-129 gi|226308462|ref|YP_002768422.1| hypothetical protein RER_49750 ... 465 4e-129 gi|262200435|ref|YP_003271643.1| DNA primase small subunit [Gord... 432 3e-119 gi|152964621|ref|YP_001360405.1| DNA primase small subunit [Kine... 426 2e-117 gi|343926392|ref|ZP_08765897.1| hypothetical protein GOALK_060_0... 417 1e-114 gi|117928585|ref|YP_873136.1| hypothetical protein Acel_1378 [Ac... 408 7e-112 gi|326383540|ref|ZP_08205226.1| DNA primase small subunit [Gordo... 398 7e-109 gi|302866130|ref|YP_003834767.1| DNA polymerase LigD polymerase ... 392 3e-107 gi|315502687|ref|YP_004081574.1| DNA polymerase ligd, polymerase... 392 4e-107 gi|271967970|ref|YP_003342166.1| DNA primase small subunit [Stre... 390 2e-106 gi|302537915|ref|ZP_07290257.1| DNA polymerase LigD, polymerase ... 390 2e-106 gi|326444367|ref|ZP_08219101.1| hypothetical protein SclaA2_2501... 388 7e-106 gi|254393498|ref|ZP_05008635.1| conserved hypothetical protein [... 388 7e-106 gi|317505952|ref|ZP_07963784.1| DNA polymerase LigD [Segniliparu... 387 1e-105 gi|145594090|ref|YP_001158387.1| DNA primase, small subunit [Sal... 384 1e-104 gi|291455297|ref|ZP_06594687.1| conserved hypothetical protein [... 383 2e-104 gi|329937072|ref|ZP_08286701.1| ATP-dependent DNA ligase [Strept... 383 2e-104 gi|291449041|ref|ZP_06588431.1| conserved hypothetical protein [... 381 7e-104 gi|182434816|ref|YP_001822535.1| hypothetical protein SGR_1023 [... 381 8e-104 gi|302522909|ref|ZP_07275251.1| DNA polymerase LigD, polymerase ... 381 1e-103 gi|256375706|ref|YP_003099366.1| DNA polymerase LigD, polymerase... 380 2e-103 gi|296270229|ref|YP_003652861.1| DNA polymerase LigD polymerase ... 380 2e-103 gi|239992054|ref|ZP_04712718.1| hypothetical protein SrosN1_3245... 380 2e-103 >gi|254366276|ref|ZP_04982320.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|308369214|ref|ZP_07666687.1| hypothetical protein TMBG_02269 [Mycobacterium tuberculosis SUMu002] gi|308371437|ref|ZP_07667162.1| hypothetical protein TMCG_01234 [Mycobacterium tuberculosis SUMu003] gi|308374966|ref|ZP_07667911.1| hypothetical protein TMGG_01273 [Mycobacterium tuberculosis SUMu007] gi|134151788|gb|EBA43833.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|308328348|gb|EFP17199.1| hypothetical protein TMBG_02269 [Mycobacterium tuberculosis SUMu002] gi|308328751|gb|EFP17602.1| hypothetical protein TMCG_01234 [Mycobacterium tuberculosis SUMu003] gi|308347874|gb|EFP36725.1| hypothetical protein TMGG_01273 [Mycobacterium tuberculosis SUMu007] Length=376 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/346 (100%), Positives = 346/346 (100%), Gaps = 0/346 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL Sbjct 31 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 90 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL Sbjct 91 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 150 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI Sbjct 151 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 210 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM Sbjct 211 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 270 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL Sbjct 271 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 330 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK 346 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK Sbjct 331 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK 376 >gi|308372724|ref|ZP_07429631.2| hypothetical protein TMEG_00226 [Mycobacterium tuberculosis SUMu005] gi|308373802|ref|ZP_07433696.2| hypothetical protein TMFG_01964 [Mycobacterium tuberculosis SUMu006] gi|308376209|ref|ZP_07668217.1| hypothetical protein TMHG_02794 [Mycobacterium tuberculosis SUMu008] gi|308340086|gb|EFP28937.1| hypothetical protein TMEG_00226 [Mycobacterium tuberculosis SUMu005] gi|308344075|gb|EFP32926.1| hypothetical protein TMFG_01964 [Mycobacterium tuberculosis SUMu006] gi|308351862|gb|EFP40713.1| hypothetical protein TMHG_02794 [Mycobacterium tuberculosis SUMu008] gi|323717594|gb|EGB26796.1| hypothetical protein TMMG_00221 [Mycobacterium tuberculosis CDC1551A] gi|339296540|gb|AEJ48651.1| hypothetical protein CCDC5079_3462 [Mycobacterium tuberculosis CCDC5079] Length=359 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/346 (100%), Positives = 346/346 (100%), Gaps = 0/346 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL Sbjct 14 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 73 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL Sbjct 74 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 133 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI Sbjct 134 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 193 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM Sbjct 194 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 253 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL Sbjct 254 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 313 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK 346 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK Sbjct 314 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK 359 >gi|15610866|ref|NP_218247.1| hypothetical protein Rv3730c [Mycobacterium tuberculosis H37Rv] gi|15843351|ref|NP_338388.1| hypothetical protein MT3835 [Mycobacterium tuberculosis CDC1551] gi|31794902|ref|NP_857395.1| hypothetical protein Mb3757c [Mycobacterium bovis AF2122/97] 54 more sequence titles Length=346 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/346 (100%), Positives = 346/346 (100%), Gaps = 0/346 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL Sbjct 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL Sbjct 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI Sbjct 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM Sbjct 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL Sbjct 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK 346 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK Sbjct 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK 346 >gi|289747570|ref|ZP_06506948.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289688098|gb|EFD55586.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] Length=346 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/346 (99%), Positives = 346/346 (100%), Gaps = 0/346 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL Sbjct 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGR+ADALKVTHPAAIVWAAQMGTITL Sbjct 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRIADALKVTHPAAIVWAAQMGTITL 120 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI Sbjct 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM Sbjct 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL Sbjct 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK 346 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK Sbjct 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK 346 >gi|289445329|ref|ZP_06435073.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289418287|gb|EFD15488.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] Length=346 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/346 (99%), Positives = 345/346 (99%), Gaps = 0/346 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL Sbjct 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL Sbjct 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI Sbjct 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM Sbjct 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDV QSIAPL Sbjct 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVVQSIAPL 300 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK 346 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK Sbjct 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK 346 >gi|289748250|ref|ZP_06507628.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289688837|gb|EFD56266.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length=346 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/346 (99%), Positives = 345/346 (99%), Gaps = 0/346 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL Sbjct 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL Sbjct 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI Sbjct 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDF QNARDRTM Sbjct 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFTQNARDRTM 240 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL Sbjct 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK 346 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK Sbjct 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK 346 >gi|340628704|ref|YP_004747156.1| hypothetical protein MCAN_37521 [Mycobacterium canettii CIPT 140010059] gi|340006894|emb|CCC46083.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=346 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/346 (99%), Positives = 345/346 (99%), Gaps = 0/346 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL Sbjct 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL Sbjct 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI Sbjct 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM Sbjct 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL Sbjct 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGNTSK 346 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLK GNTSK Sbjct 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKRGNTSK 346 >gi|41406438|ref|NP_959274.1| hypothetical protein MAP0340c [Mycobacterium avium subsp. paratuberculosis K-10] gi|254773368|ref|ZP_05214884.1| hypothetical protein MaviaA2_01621 [Mycobacterium avium subsp. avium ATCC 25291] gi|41394787|gb|AAS02657.1| hypothetical protein MAP_0340c [Mycobacterium avium subsp. paratuberculosis K-10] Length=342 Score = 617 bits (1592), Expect = 7e-175, Method: Compositional matrix adjust. Identities = 297/341 (88%), Positives = 320/341 (94%), Gaps = 0/341 (0%) Query 3 AAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQR 62 AAAEE+DVDGIAVRLT+PD++YFPKLGS GTKR L++YY AVAGGPML ALRDRPTHLQR Sbjct 2 AAAEEVDVDGIAVRLTNPDKVYFPKLGSKGTKRHLIDYYRAVAGGPMLDALRDRPTHLQR 61 Query 63 FPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHP 122 FPDG+DGE+IYQKRIP+H PDYLQTCRVTFPSGR ADALKVTHPAAIVWAAQMGT+TLHP Sbjct 62 FPDGIDGEEIYQKRIPQHHPDYLQTCRVTFPSGRTADALKVTHPAAIVWAAQMGTVTLHP 121 Query 123 WQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIHV 182 WQVRCPDT+HPDELRIDLDPQPG F +AR+VAVDVLR +LD+LGLVGYPKTSGGRGIHV Sbjct 122 WQVRCPDTDHPDELRIDLDPQPGVAFAQARSVAVDVLRPLLDELGLVGYPKTSGGRGIHV 181 Query 183 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMAS 242 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMAS Sbjct 182 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMAS 241 Query 243 AYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLD 302 AYSVR TPIATVSMPLTW++LAGADPDDYTM TVP+LV R++PWA +DDVAQSI PLL Sbjct 242 AYSVRRTPIATVSMPLTWDQLAGADPDDYTMATVPDLVSARENPWAAIDDVAQSIGPLLR 301 Query 303 LAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGN 343 +A ADEERGLGDMPYPPNYPKMPGEPKRVQPSRDT+ K N Sbjct 302 MAEADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTEHKKKN 342 >gi|240171064|ref|ZP_04749723.1| hypothetical protein MkanA1_17264 [Mycobacterium kansasii ATCC 12478] Length=345 Score = 617 bits (1590), Expect = 1e-174, Method: Compositional matrix adjust. Identities = 293/340 (87%), Positives = 319/340 (94%), Gaps = 0/340 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 M AAA+E+DVDGI VRLT+PD++YFP+LGS GTKRRLVEYY AV GPML LRDRPTHL Sbjct 1 MTAAADEVDVDGIRVRLTNPDKVYFPQLGSGGTKRRLVEYYLAVGRGPMLATLRDRPTHL 60 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDG+DGE+IYQKR+P+H PDYLQTCRVTFPSGR ADALKVTHPAAIVWAAQM T+TL Sbjct 61 QRFPDGIDGEEIYQKRVPQHHPDYLQTCRVTFPSGRTADALKVTHPAAIVWAAQMATVTL 120 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPWQVRCPDTEHPDELRIDLDPQPGTGF +AR+VAVDVLR +LD+LGLVGYPKTSGGRG+ Sbjct 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFAQARSVAVDVLRPLLDELGLVGYPKTSGGRGV 180 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVF RIATDWDF++VRRAGIALARE+ERR PD VTTSWWKE+RGARIF+DFNQNARDRTM Sbjct 181 HVFFRIATDWDFIQVRRAGIALARELERRTPDTVTTSWWKEQRGARIFVDFNQNARDRTM 240 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYSVRPTPIATVS PLTWEELAGADPDDYT+ TVP+LV R+DPWAGMDDVAQSI PL Sbjct 241 ASAYSVRPTPIATVSTPLTWEELAGADPDDYTIATVPDLVAGREDPWAGMDDVAQSITPL 300 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLK 340 LDLAAAD+ERGLGD+PYPPNYPKMPGEPKRVQPSRDTDLK Sbjct 301 LDLAAADDERGLGDLPYPPNYPKMPGEPKRVQPSRDTDLK 340 >gi|254818489|ref|ZP_05223490.1| hypothetical protein MintA_01124 [Mycobacterium intracellulare ATCC 13950] Length=343 Score = 616 bits (1589), Expect = 1e-174, Method: Compositional matrix adjust. Identities = 296/341 (87%), Positives = 319/341 (94%), Gaps = 0/341 (0%) Query 3 AAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQR 62 AAAEE+DVDG+AVRLT+PD++YFPKLGS GTKR LVEYY AVAGGPML LRDRP+HLQR Sbjct 2 AAAEEIDVDGVAVRLTNPDKVYFPKLGSKGTKRHLVEYYRAVAGGPMLDTLRDRPSHLQR 61 Query 63 FPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHP 122 FPDG+DGE+IYQKRIP+H PDYL+TC+VTFPSGR ADALKVTHPAAIVWAAQMGTITLHP Sbjct 62 FPDGIDGEEIYQKRIPQHHPDYLETCQVTFPSGRTADALKVTHPAAIVWAAQMGTITLHP 121 Query 123 WQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIHV 182 WQVRCPDT+HPDELRIDLDPQPG F +ARTVAVDVLR +LD+LGLVGYPKTSGGRGIHV Sbjct 122 WQVRCPDTDHPDELRIDLDPQPGVAFEQARTVAVDVLRPLLDELGLVGYPKTSGGRGIHV 181 Query 183 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMAS 242 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTT+WWKEERG RIF+DFNQNARDRTMAS Sbjct 182 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTAWWKEERGERIFVDFNQNARDRTMAS 241 Query 243 AYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLD 302 AYSVR TPIATVSMPLTW+ELAGA+PDDYTM TVPELV R+DPWA MDDVAQSIA LL+ Sbjct 242 AYSVRRTPIATVSMPLTWDELAGAEPDDYTMATVPELVARREDPWAAMDDVAQSIASLLE 301 Query 303 LAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGN 343 +A ADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTD + G Sbjct 302 MAEADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDRRNGK 342 >gi|336459742|gb|EGO38662.1| DNA polymerase LigD [Mycobacterium avium subsp. paratuberculosis S397] Length=342 Score = 616 bits (1589), Expect = 2e-174, Method: Compositional matrix adjust. Identities = 296/341 (87%), Positives = 320/341 (94%), Gaps = 0/341 (0%) Query 3 AAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQR 62 AAAEE+DVDGIAVRLT+PD++YFPKLGS GTKR L++YY AVAGGPML ALR+RPTHLQR Sbjct 2 AAAEEVDVDGIAVRLTNPDKVYFPKLGSKGTKRHLIDYYRAVAGGPMLDALRERPTHLQR 61 Query 63 FPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHP 122 FPDG+DGE+IYQKRIP+H PDYLQTCRVTFPSGR ADALKVTHPAAIVWAAQMGT+TLHP Sbjct 62 FPDGIDGEEIYQKRIPQHHPDYLQTCRVTFPSGRTADALKVTHPAAIVWAAQMGTVTLHP 121 Query 123 WQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIHV 182 WQVRCPDT+HPDELRIDLDPQPG F +AR+VAVDVLR +LD+LGLVGYPKTSGGRGIHV Sbjct 122 WQVRCPDTDHPDELRIDLDPQPGVAFAQARSVAVDVLRPLLDELGLVGYPKTSGGRGIHV 181 Query 183 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMAS 242 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMAS Sbjct 182 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMAS 241 Query 243 AYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLD 302 AYSVR TPIATVSMPLTW++LAGADPDDYTM TVP+LV R++PWA +DDVAQSI PLL Sbjct 242 AYSVRRTPIATVSMPLTWDQLAGADPDDYTMATVPDLVSARENPWAAIDDVAQSIGPLLR 301 Query 303 LAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGN 343 +A ADEERGLGDMPYPPNYPKMPGEPKRVQPSRDT+ K N Sbjct 302 MAEADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTEHKKKN 342 >gi|118466411|ref|YP_879649.1| DNA polymerase LigD polymerase subunit [Mycobacterium avium 104] gi|118167698|gb|ABK68595.1| DNA polymerase LigD, polymerase domain [Mycobacterium avium 104] Length=342 Score = 616 bits (1589), Expect = 2e-174, Method: Compositional matrix adjust. Identities = 296/341 (87%), Positives = 320/341 (94%), Gaps = 0/341 (0%) Query 3 AAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQR 62 AAAEE+DVDGIAVRLT+PD++YFPKLGS GTKR L++YY AVAGGPML ALRDRPTHLQR Sbjct 2 AAAEEVDVDGIAVRLTNPDKVYFPKLGSKGTKRHLIDYYRAVAGGPMLDALRDRPTHLQR 61 Query 63 FPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHP 122 FPDG+DGE+IYQKRIP+H PDYLQTCRVTFPSGR ADALKVTHPAAIVWAAQMGT+TLHP Sbjct 62 FPDGIDGEEIYQKRIPQHHPDYLQTCRVTFPSGRTADALKVTHPAAIVWAAQMGTVTLHP 121 Query 123 WQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIHV 182 WQVRCP+T+HPDELRIDLDPQPG F +AR+VAVDVLR +LD+LGLVGYPKTSGGRGIHV Sbjct 122 WQVRCPETDHPDELRIDLDPQPGVAFAQARSVAVDVLRPLLDELGLVGYPKTSGGRGIHV 181 Query 183 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMAS 242 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMAS Sbjct 182 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMAS 241 Query 243 AYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLD 302 AYSVR TPIATVSMPLTW++LAGADPDDYTM TVP+LV R++PWA +DDVAQSI PLL Sbjct 242 AYSVRRTPIATVSMPLTWDQLAGADPDDYTMATVPDLVSARENPWAAIDDVAQSIGPLLR 301 Query 303 LAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGN 343 +A ADEERGLGDMPYPPNYPKMPGEPKRVQPSRDT+ K N Sbjct 302 MAEADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTEHKKKN 342 >gi|296166842|ref|ZP_06849259.1| DNA polymerase LigD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897719|gb|EFG77308.1| DNA polymerase LigD [Mycobacterium parascrofulaceum ATCC BAA-614] Length=343 Score = 610 bits (1573), Expect = 1e-172, Method: Compositional matrix adjust. Identities = 296/338 (88%), Positives = 318/338 (95%), Gaps = 0/338 (0%) Query 3 AAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQR 62 AAAEELDVDG+AVRLT+PD++YFPKLGS GTKRRLVEYY AVAGGPML LRDRPTHLQR Sbjct 2 AAAEELDVDGVAVRLTNPDKVYFPKLGSKGTKRRLVEYYRAVAGGPMLDTLRDRPTHLQR 61 Query 63 FPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHP 122 FPDGVDGE+IYQKRIP+H PDYLQTCRVTFPSGR ADALKVTHP+AIVWAAQMGTITLHP Sbjct 62 FPDGVDGEEIYQKRIPQHHPDYLQTCRVTFPSGRTADALKVTHPSAIVWAAQMGTITLHP 121 Query 123 WQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIHV 182 WQVRCPD +HPDELRIDLDPQPG F +ARTVAVDVLR +L++LGLVGYPKTSGGRGIHV Sbjct 122 WQVRCPDPDHPDELRIDLDPQPGVAFEQARTVAVDVLRPLLEELGLVGYPKTSGGRGIHV 181 Query 183 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMAS 242 FLRIATDWDFVEVRRAGIALAREVERRAP+AVTTSWWKEERG RIFIDFNQNARDRTMAS Sbjct 182 FLRIATDWDFVEVRRAGIALAREVERRAPEAVTTSWWKEERGERIFIDFNQNARDRTMAS 241 Query 243 AYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLD 302 AYSVRPTPIATVS PLTW+ELAGA+PDDYT+ TVP+LVK R+DPWA M+DV QSIA LL+ Sbjct 242 AYSVRPTPIATVSTPLTWDELAGAEPDDYTIATVPDLVKGREDPWAAMEDVTQSIARLLE 301 Query 303 LAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLK 340 +A ADE+RGLGDMPYPPNYPKMPGEPKRVQPSRDT LK Sbjct 302 MADADEDRGLGDMPYPPNYPKMPGEPKRVQPSRDTGLK 339 >gi|183985233|ref|YP_001853524.1| hypothetical protein MMAR_5265 [Mycobacterium marinum M] gi|183178559|gb|ACC43669.1| conserved hypothetical protein [Mycobacterium marinum M] Length=346 Score = 610 bits (1572), Expect = 1e-172, Method: Compositional matrix adjust. Identities = 292/343 (86%), Positives = 317/343 (93%), Gaps = 0/343 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 M AAAEELDVDGIAVR+T+ D++YFPKLG GTK RL++YY AV GGPMLTALRDRPTHL Sbjct 1 MPAAAEELDVDGIAVRVTNRDKVYFPKLGKQGTKGRLIDYYLAVGGGPMLTALRDRPTHL 60 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDG+DGE+IYQKR+P+H PDYL+TC+VTFPSGR ADAL+VTHPAAIVWAAQMGT+TL Sbjct 61 QRFPDGIDGEEIYQKRVPKHHPDYLRTCQVTFPSGRTADALQVTHPAAIVWAAQMGTVTL 120 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPWQVRCPDTEHPDELRIDLDPQPGTGF +AR+VAVDVL+ VLD+LGLVGYPKTSGGRGI Sbjct 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFAQARSVAVDVLKPVLDELGLVGYPKTSGGRGI 180 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVFLRIATDWDF+EVRRAGIALAREVERRAP+AVTTSWWKEERG RIFIDFNQNARDRTM Sbjct 181 HVFLRIATDWDFIEVRRAGIALAREVERRAPEAVTTSWWKEERGQRIFIDFNQNARDRTM 240 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYSVR TPIATVS PLTW+ELAGADPDDYTM TV +L+ R DPWAGMDDVAQSI L Sbjct 241 ASAYSVRATPIATVSTPLTWDELAGADPDDYTMATVADLIARRADPWAGMDDVAQSITGL 300 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGN 343 LD+A AD ERGLGDMPYPPNYPKMPGEPKRVQPSR+TDL N Sbjct 301 LDMAEADAERGLGDMPYPPNYPKMPGEPKRVQPSRNTDLNRKN 343 >gi|118619482|ref|YP_907814.1| hypothetical protein MUL_4339 [Mycobacterium ulcerans Agy99] gi|118571592|gb|ABL06343.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=346 Score = 610 bits (1572), Expect = 2e-172, Method: Compositional matrix adjust. Identities = 293/343 (86%), Positives = 318/343 (93%), Gaps = 0/343 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 M AAAEELDVDGIAVR+T+ D++YFPKLG GTK RL++YY AV GGPMLTALRDRPTHL Sbjct 1 MPAAAEELDVDGIAVRVTNRDKVYFPKLGKQGTKGRLIDYYLAVGGGPMLTALRDRPTHL 60 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDG+DGE+IYQKR+P+H PDYL+TC+VTFPSGR ADAL+VTHPAAIVWAAQMGT+TL Sbjct 61 QRFPDGIDGEEIYQKRVPKHHPDYLRTCQVTFPSGRTADALRVTHPAAIVWAAQMGTVTL 120 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPWQVRCPDTEHPDELRIDLDPQPGTGF +AR+VAVDVL+ VLDDLGLVGYPKTSGGRGI Sbjct 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFAQARSVAVDVLKPVLDDLGLVGYPKTSGGRGI 180 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVFLRIA+DWDF+EVRRAGIALAREVERRAP+AVTTSWWKEERG RIFIDFNQNARDRTM Sbjct 181 HVFLRIASDWDFIEVRRAGIALAREVERRAPEAVTTSWWKEERGQRIFIDFNQNARDRTM 240 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYSVR TPIATVS PLTW+ELAGADPDDYTM TV +L+ R DPWAGMDDVAQSI+ L Sbjct 241 ASAYSVRATPIATVSTPLTWDELAGADPDDYTMATVADLIARRADPWAGMDDVAQSISGL 300 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGN 343 LD+A AD ERGLGDMPYP NYPKMPGEPKRVQPSRDTDLK N Sbjct 301 LDMAEADAERGLGDMPYPRNYPKMPGEPKRVQPSRDTDLKPKN 343 >gi|342859959|ref|ZP_08716611.1| hypothetical protein MCOL_13805 [Mycobacterium colombiense CECT 3035] gi|342132337|gb|EGT85566.1| hypothetical protein MCOL_13805 [Mycobacterium colombiense CECT 3035] Length=343 Score = 602 bits (1553), Expect = 2e-170, Method: Compositional matrix adjust. Identities = 291/339 (86%), Positives = 311/339 (92%), Gaps = 0/339 (0%) Query 3 AAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQR 62 AAAEELDVDGIAVRLT+PD++YFPKLGS GTKR LV+YY AVAGGPML LRDRPTHLQR Sbjct 2 AAAEELDVDGIAVRLTNPDKVYFPKLGSKGTKRHLVDYYRAVAGGPMLDTLRDRPTHLQR 61 Query 63 FPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHP 122 FPDGVDGE+IYQKRIP+H PDYLQTC+VTFPSGR ADALKVTHPAA+VWAAQMGT+TLHP Sbjct 62 FPDGVDGEEIYQKRIPQHHPDYLQTCQVTFPSGRTADALKVTHPAAVVWAAQMGTVTLHP 121 Query 123 WQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIHV 182 WQVRCPDT+HPDELRIDLDPQPG F +ARTVAVDVLR +LD+LGL+GYPKTSGGRGIHV Sbjct 122 WQVRCPDTDHPDELRIDLDPQPGVAFEQARTVAVDVLRPLLDELGLIGYPKTSGGRGIHV 181 Query 183 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMAS 242 FLRIATDWDF EVRRAGIALAREVERRAPD VTTSWWKEERG RIFIDFNQNARDRTMAS Sbjct 182 FLRIATDWDFTEVRRAGIALAREVERRAPDLVTTSWWKEERGERIFIDFNQNARDRTMAS 241 Query 243 AYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLD 302 AYSVR TPIATVSMPLTWEELA A+PDDYTM T +LV+ R+DPWA MDD QSI LL+ Sbjct 242 AYSVRRTPIATVSMPLTWEELADAEPDDYTMATAADLVRDREDPWAAMDDAVQSIGSLLE 301 Query 303 LAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKG 341 +A ADEERGLGDMPYPPNYPKMPGEPKRVQPSRD DLK Sbjct 302 MAEADEERGLGDMPYPPNYPKMPGEPKRVQPSRDRDLKA 340 >gi|118468272|ref|YP_890519.1| DNA polymerase LigD polymerase subunit [Mycobacterium smegmatis str. MC2 155] gi|118169559|gb|ABK70455.1| DNA polymerase LigD, polymerase domain [Mycobacterium smegmatis str. MC2 155] Length=350 Score = 573 bits (1477), Expect = 2e-161, Method: Compositional matrix adjust. Identities = 266/335 (80%), Positives = 301/335 (90%), Gaps = 0/335 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 MA+AA ELDVDG+ VR T+PD++YFPKLG +GTK +LVEYY +VA GPML LRDRP HL Sbjct 2 MASAATELDVDGVKVRFTNPDKVYFPKLGKNGTKGKLVEYYLSVASGPMLALLRDRPVHL 61 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDG++GE+IYQKR+P+ PDYL+TC VTFPSGR ADALK+THP++I+WAAQMGT+TL Sbjct 62 QRFPDGIEGEEIYQKRVPQKHPDYLETCVVTFPSGRTADALKITHPSSIIWAAQMGTVTL 121 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPWQVRCPDTEHPDELR+DLDPQPGTGF EARTVA DVL+ +LD+LGLVGYPKTSGGRG+ Sbjct 122 HPWQVRCPDTEHPDELRVDLDPQPGTGFKEARTVACDVLKPLLDELGLVGYPKTSGGRGV 181 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVFLRI WDF+EVRRAGIALAREVERRAPDAVTTSWWKEERG R+FID+NQNARDRT Sbjct 182 HVFLRIKPQWDFIEVRRAGIALAREVERRAPDAVTTSWWKEERGERLFIDYNQNARDRTF 241 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYSVR TPIATVSMPL+W+EL ADPDDYTM TVP+L+ RDDPWA +D V QS+ PL Sbjct 242 ASAYSVRKTPIATVSMPLSWDELRNADPDDYTMNTVPDLLAGRDDPWADIDSVQQSLGPL 301 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSR 335 LDL AADEERGLGD+PYPPNYPKMPGEP RVQPS+ Sbjct 302 LDLVAADEERGLGDLPYPPNYPKMPGEPPRVQPSK 336 >gi|120406485|ref|YP_956314.1| hypothetical protein Mvan_5542 [Mycobacterium vanbaalenii PYR-1] gi|119959303|gb|ABM16308.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=349 Score = 546 bits (1406), Expect = 2e-153, Method: Compositional matrix adjust. Identities = 259/335 (78%), Positives = 293/335 (88%), Gaps = 1/335 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 M + A E+DVDG+ VRLTSPD+ YFPKLG GTK +L EYY AVA M+ LRDRP HL Sbjct 1 MPSPATEIDVDGVKVRLTSPDKPYFPKLGKDGTKGKLFEYYLAVADR-MVALLRDRPVHL 59 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDG+DGE+IYQKR+P+ PDYL TC VTFPSGR ADALK+THP+AI WAAQMGT+TL Sbjct 60 QRFPDGIDGEEIYQKRVPQKHPDYLHTCTVTFPSGRTADALKITHPSAIAWAAQMGTVTL 119 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPWQVRCPD EHPDELRIDLDPQPGTGF+EAR+VAVDVL+ +LD+LGLVG+PKTSGGRG+ Sbjct 120 HPWQVRCPDIEHPDELRIDLDPQPGTGFIEARSVAVDVLKPLLDELGLVGFPKTSGGRGV 179 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVFLRIATDWDF+ VRRAGIALARE+ERRAPDAVTTSWWKEERGAR+F+D+NQNARDRT Sbjct 180 HVFLRIATDWDFIAVRRAGIALAREIERRAPDAVTTSWWKEERGARLFVDYNQNARDRTF 239 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYS R TPIATVS PLTWEEL A+PDDYT+ TVP+ V R DPWAG+DD AQSI L Sbjct 240 ASAYSARKTPIATVSTPLTWEELRTAEPDDYTILTVPDFVAGRPDPWAGIDDTAQSIDTL 299 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSR 335 L++ ADEERGLGD+PYPP+YPKMPGEP RVQPS+ Sbjct 300 LEMVKADEERGLGDLPYPPSYPKMPGEPPRVQPSK 334 >gi|108801878|ref|YP_642075.1| hypothetical protein Mmcs_4915 [Mycobacterium sp. MCS] gi|119871031|ref|YP_940983.1| hypothetical protein Mkms_5004 [Mycobacterium sp. KMS] gi|108772297|gb|ABG11019.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119697120|gb|ABL94193.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=347 Score = 546 bits (1406), Expect = 2e-153, Method: Compositional matrix adjust. Identities = 261/335 (78%), Positives = 294/335 (88%), Gaps = 1/335 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 MA+AA E+DVDG+ VRLT+PD+ YFPKLG GTK +LV+YY AVA M+ LRDRP HL Sbjct 1 MASAATEIDVDGVKVRLTNPDKPYFPKLGKDGTKGKLVDYYLAVADR-MVALLRDRPVHL 59 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDG++GE+IYQKR+P+ RPDYL+TC VTFPSGR ADALK+THP+AI WAAQMGT+TL Sbjct 60 QRFPDGIEGEEIYQKRVPQKRPDYLETCTVTFPSGRTADALKITHPSAIAWAAQMGTVTL 119 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPWQVRCPDTEHPDELRIDLDPQPGTGF EAR+VAVDVL+ +LD+LGLVGYPKTSGGRG+ Sbjct 120 HPWQVRCPDTEHPDELRIDLDPQPGTGFAEARSVAVDVLKPLLDELGLVGYPKTSGGRGV 179 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVFLRIATDWDF+ VRRAGIALAREVERRAP+AVTTSWWKEERG R+FID+NQNARDRT Sbjct 180 HVFLRIATDWDFIAVRRAGIALAREVERRAPNAVTTSWWKEERGRRLFIDYNQNARDRTF 239 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYS R TPIATVS PLTWEEL A+PDDYT+ TVP+ V R DPWA +D AQSI L Sbjct 240 ASAYSARKTPIATVSTPLTWEELRVAEPDDYTIATVPDFVAGRPDPWADIDKKAQSIDTL 299 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSR 335 L + ADEERGLGD+PYPPNYPKMPGEP RVQPS+ Sbjct 300 LKMVEADEERGLGDLPYPPNYPKMPGEPPRVQPSK 334 >gi|126437846|ref|YP_001073537.1| DNA primase, small subunit [Mycobacterium sp. JLS] gi|126237646|gb|ABO01047.1| DNA primase, small subunit [Mycobacterium sp. JLS] Length=347 Score = 545 bits (1405), Expect = 3e-153, Method: Compositional matrix adjust. Identities = 261/335 (78%), Positives = 294/335 (88%), Gaps = 1/335 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 MA+AA E+DVDG+ VRLT+PD+ YFPKLG GTK +LV+YY AVA M+ LRDRP HL Sbjct 1 MASAATEIDVDGVKVRLTNPDKPYFPKLGKDGTKGKLVDYYLAVADR-MVALLRDRPVHL 59 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDG++GE+IYQKR+P+ RPDYL+TC VTFPSGR ADALK+THP+AI WAAQMGT+TL Sbjct 60 QRFPDGIEGEEIYQKRVPQKRPDYLETCTVTFPSGRTADALKITHPSAIAWAAQMGTVTL 119 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPWQVRCPDTEHPDELRIDLDPQPGTGF EAR+VAVDVL+ +LD+LGLVGYPKTSGGRG+ Sbjct 120 HPWQVRCPDTEHPDELRIDLDPQPGTGFAEARSVAVDVLKPLLDELGLVGYPKTSGGRGV 179 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVFLRIATDWDF+ VRRAGIALAREVERRAP+AVTTSWWKEERG R+FID+NQNARDRT Sbjct 180 HVFLRIATDWDFIAVRRAGIALAREVERRAPNAVTTSWWKEERGRRLFIDYNQNARDRTF 239 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYS R TPIATVS PLTWEEL A+PDDYT+ TVP+ V R DPWA +D AQSI L Sbjct 240 ASAYSARKTPIATVSTPLTWEELRVAEPDDYTIATVPDFVAGRPDPWADIDKKAQSIDTL 299 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSR 335 L + ADEERGLGD+PYPPNYPKMPGEP RVQPS+ Sbjct 300 LKMVEADEERGLGDLPYPPNYPKMPGEPPRVQPSK 334 >gi|145221866|ref|YP_001132544.1| DNA primase, small subunit [Mycobacterium gilvum PYR-GCK] gi|315446399|ref|YP_004079278.1| DNA polymerase LigD, polymerase domain [Mycobacterium sp. Spyr1] gi|145214352|gb|ABP43756.1| DNA primase, small subunit [Mycobacterium gilvum PYR-GCK] gi|315264702|gb|ADU01444.1| DNA polymerase LigD, polymerase domain [Mycobacterium sp. Spyr1] Length=349 Score = 539 bits (1388), Expect = 3e-151, Method: Compositional matrix adjust. Identities = 257/335 (77%), Positives = 290/335 (87%), Gaps = 1/335 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 M + A ELDVDG+ VR T+PD+ YFPKLG +GTK +L+EYY AVA PM+T LRDRP HL Sbjct 1 MPSPATELDVDGVKVRFTNPDKPYFPKLGKNGTKGKLLEYYLAVAD-PMVTLLRDRPVHL 59 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDG+DGE+IYQKR+P+ PDYL+TC VTFPSGR ADALK+THP+AI WAAQMGT+TL Sbjct 60 QRFPDGIDGEEIYQKRVPQKHPDYLETCTVTFPSGRTADALKITHPSAIAWAAQMGTVTL 119 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPWQVRCPDTEHPDELRIDLDPQPGTGF EA VAV VL+ +LD+LGLVGYPKTSGGRG+ Sbjct 120 HPWQVRCPDTEHPDELRIDLDPQPGTGFTEAADVAVGVLKPLLDELGLVGYPKTSGGRGV 179 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVFLRI TDWDF+ VRRAGIALAREVERRAPDAVTTSWWKEERG R+FID+NQNARDRT Sbjct 180 HVFLRIKTDWDFIAVRRAGIALAREVERRAPDAVTTSWWKEERGKRLFIDYNQNARDRTF 239 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 AS YS R TPIATVS PLTWEEL A+PDDYT+ TVP+ + R DPWAG+DD AQSI L Sbjct 240 ASPYSARKTPIATVSTPLTWEELRDAEPDDYTIQTVPDFIAGRPDPWAGIDDNAQSIDTL 299 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSR 335 L++ ADEERG GD+PYPP+YPKMPGEP RVQPS+ Sbjct 300 LEMVHADEERGEGDLPYPPSYPKMPGEPPRVQPSK 334 >gi|333992662|ref|YP_004525276.1| hypothetical protein JDM601_4022 [Mycobacterium sp. JDM601] gi|333488630|gb|AEF38022.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=351 Score = 529 bits (1363), Expect = 2e-148, Method: Compositional matrix adjust. Identities = 253/333 (76%), Positives = 288/333 (87%), Gaps = 1/333 (0%) Query 4 AAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQRF 63 +AEELDVDG AVR TS D++YFP+LG+ GTKR L +YY VA GP+L AL DRPTHLQRF Sbjct 6 SAEELDVDGTAVRFTSGDKVYFPRLGAGGTKRALADYYLTVANGPLLQALADRPTHLQRF 65 Query 64 PDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHPW 123 PDG+ G ++YQKR+PR PDYLQ+CRVTFPSGR ADALKVT PA I+WA QM T+T HPW Sbjct 66 PDGIQGAEVYQKRLPRGHPDYLQSCRVTFPSGRTADALKVTRPADILWAVQMSTVTFHPW 125 Query 124 QVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIHVF 183 VRC DT+HPDELRIDLDPQPGTGF EAR VA++VLR +LD+LGLVGY KTSGGRG+HVF Sbjct 126 PVRCGDTDHPDELRIDLDPQPGTGFAEARAVALEVLRPLLDELGLVGYVKTSGGRGLHVF 185 Query 184 LRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMASA 243 LRI TDWDF+EVRRAGIALARE+ERRAP+AVT+SWWKEERG RIFIDFNQNARDRTMASA Sbjct 186 LRIKTDWDFIEVRRAGIALARELERRAPEAVTSSWWKEERGKRIFIDFNQNARDRTMASA 245 Query 244 YSVRPTPIATVSMPLTWEELA-GADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLD 302 YSVR TPIATVSMPLTW+ LA GADPDDYT+ TVP+L+ R D W +D + QS+ PLL+ Sbjct 246 YSVRATPIATVSMPLTWDGLAEGADPDDYTIATVPDLIARRGDAWETIDGLEQSLQPLLE 305 Query 303 LAAADEERGLGDMPYPPNYPKMPGEPKRVQPSR 335 + AADE RGLGD+PYPPNYPKMPGEP RVQPS+ Sbjct 306 MVAADEARGLGDLPYPPNYPKMPGEPPRVQPSK 338 >gi|111022075|ref|YP_705047.1| DNA ligase (ATP), N-terminal [Rhodococcus jostii RHA1] gi|110821605|gb|ABG96889.1| possible DNA ligase (ATP), N-terminal [Rhodococcus jostii RHA1] Length=342 Score = 504 bits (1298), Expect = 8e-141, Method: Compositional matrix adjust. Identities = 244/342 (72%), Positives = 284/342 (84%), Gaps = 2/342 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHG-TKRRLVEYYFAVA-GGPMLTALRDRPT 58 MA+ AEELDVDG+AVRL++PD++Y+PKLG+ G TKR LVEYY VA G +LTAL DRPT Sbjct 1 MASPAEELDVDGVAVRLSNPDKIYYPKLGAEGGTKRHLVEYYRTVALDGALLTALFDRPT 60 Query 59 HLQRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTI 118 HLQRFPDG++GE+IYQKR+P RPD++++C VTFPSGR AD L+V A IVWAA +G I Sbjct 61 HLQRFPDGIEGEEIYQKRVPAKRPDHVESCEVTFPSGRKADVLRVRSAANIVWAANLGNI 120 Query 119 TLHPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGR 178 T HPW VRCPD +HPDELRIDLDPQPGTGF +AR VA+DVLR +LD+LGLVGYPKTSGGR Sbjct 121 TFHPWAVRCPDVDHPDELRIDLDPQPGTGFDDARAVALDVLRPLLDELGLVGYPKTSGGR 180 Query 179 GIHVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDR 238 G+HV+LRI WDF+EVRRAGIALARE+ERR+ D TTSWWKEERG RIF+DFNQNARD+ Sbjct 181 GLHVYLRIEPRWDFIEVRRAGIALAREIERRSGDRATTSWWKEERGERIFLDFNQNARDK 240 Query 239 TMASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIA 298 T+ASAYS R TPIATVS P+TWEEL DPDD+T+ TVP L+ R DP M DVAQS+ Sbjct 241 TIASAYSARKTPIATVSTPVTWEELVDVDPDDFTIATVPALLAKRGDPMGTMGDVAQSLD 300 Query 299 PLLDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLK 340 LL++A D GLGD+PYPPNYPKMPGEPKRVQPSRD D K Sbjct 301 VLLEMAERDAANGLGDLPYPPNYPKMPGEPKRVQPSRDRDRK 342 >gi|226364579|ref|YP_002782361.1| hypothetical protein ROP_51690 [Rhodococcus opacus B4] gi|226243068|dbj|BAH53416.1| hypothetical protein [Rhodococcus opacus B4] Length=342 Score = 501 bits (1289), Expect = 1e-139, Method: Compositional matrix adjust. Identities = 243/342 (72%), Positives = 283/342 (83%), Gaps = 2/342 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHG-TKRRLVEYYFAVA-GGPMLTALRDRPT 58 MA+ AEELDVDG+AVRL+SPD++Y+PKLG+ G TKR LVEYY VA G +L AL DRPT Sbjct 1 MASPAEELDVDGVAVRLSSPDKIYYPKLGADGGTKRHLVEYYRTVALNGALLGALFDRPT 60 Query 59 HLQRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTI 118 HLQRFPDGV+GE+IYQKR+P RPD++ +C VTFPSGR AD L+V A IVWAA +G I Sbjct 61 HLQRFPDGVEGEEIYQKRVPAKRPDHVDSCEVTFPSGRKADVLRVRSAANIVWAANLGNI 120 Query 119 TLHPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGR 178 T HPW VRCPD +HPDELRIDLDPQPGTGF +AR VA+DVLR +LD+LGL+GYPKTSGGR Sbjct 121 TFHPWAVRCPDVDHPDELRIDLDPQPGTGFDDARAVALDVLRPLLDELGLIGYPKTSGGR 180 Query 179 GIHVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDR 238 G+HV+LRI WDF+EVRRAGIALARE+ERR+ D TTSWWKEERG RIF+DFNQNARD+ Sbjct 181 GLHVYLRIEPRWDFIEVRRAGIALAREIERRSGDRATTSWWKEERGERIFLDFNQNARDK 240 Query 239 TMASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIA 298 T+ASAYS R TPIATVS P+TW+EL PDD+T+ TVP L++ R DP A M DVAQS+ Sbjct 241 TIASAYSARKTPIATVSTPVTWDELVDVHPDDFTIATVPALLEKRGDPMATMGDVAQSLD 300 Query 299 PLLDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLK 340 LL++A D GLGD+PYPPNYPKMPGEPKRVQPSRD D K Sbjct 301 VLLEMAERDTANGLGDLPYPPNYPKMPGEPKRVQPSRDRDRK 342 >gi|312141558|ref|YP_004008894.1| hypothetical protein REQ_42490 [Rhodococcus equi 103S] gi|311890897|emb|CBH50216.1| conserved hypothetical protein [Rhodococcus equi 103S] Length=348 Score = 484 bits (1245), Expect = 1e-134, Method: Compositional matrix adjust. Identities = 231/338 (69%), Positives = 278/338 (83%), Gaps = 2/338 (0%) Query 5 AEELDVDGIAVRLTSPDRMYFPKLGSHG-TKRRLVEYYFAVA-GGPMLTALRDRPTHLQR 62 AEELDVDG+AVRL++PD++Y+P+LG G TKR LVEYY VA GG +L AL DRPTHLQR Sbjct 9 AEELDVDGVAVRLSNPDKIYYPRLGPEGGTKRHLVEYYLKVATGGELLRALHDRPTHLQR 68 Query 63 FPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHP 122 +PDGV+GE+IYQKR+P RP+++ +C VTFPS R AD L+V A IVWAA +GT+T HP Sbjct 69 YPDGVEGEEIYQKRVPAKRPEHVASCEVTFPSKRTADVLRVRGAADIVWAANLGTVTFHP 128 Query 123 WQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIHV 182 W VRCPD EHPDELRID DPQPGT F +AR VA+DV++ +LD+LGL+G+PKTSGGRG+HV Sbjct 129 WAVRCPDVEHPDELRIDFDPQPGTDFDDARRVALDVMQPLLDELGLIGFPKTSGGRGLHV 188 Query 183 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMAS 242 ++RI WDFVEVRRAGIAL RE+ERR+ D TT+WWKEERG RIF+DFNQNARD+T+AS Sbjct 189 YIRIEPRWDFVEVRRAGIALCREIERRSGDRATTNWWKEERGKRIFLDFNQNARDKTIAS 248 Query 243 AYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLD 302 AYS R TPIATVS P+TWEELA +PDD+T+ TVP L+ R DP A +DDVA S+ LL+ Sbjct 249 AYSARNTPIATVSTPVTWEELASVEPDDFTIATVPALLAGRGDPMATLDDVAHSLDVLLE 308 Query 303 LAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLK 340 +A D GLGD+PYPPN+PKMPGEPKRVQPSRD D K Sbjct 309 MAERDAAAGLGDLPYPPNHPKMPGEPKRVQPSRDRDRK 346 >gi|325677224|ref|ZP_08156890.1| DNA polymerase LigD [Rhodococcus equi ATCC 33707] gi|325551921|gb|EGD21617.1| DNA polymerase LigD [Rhodococcus equi ATCC 33707] Length=348 Score = 483 bits (1244), Expect = 1e-134, Method: Compositional matrix adjust. Identities = 231/338 (69%), Positives = 278/338 (83%), Gaps = 2/338 (0%) Query 5 AEELDVDGIAVRLTSPDRMYFPKLGSHG-TKRRLVEYYFAVA-GGPMLTALRDRPTHLQR 62 AEELDVDG+AVRL++PD++Y+P+LG G TKR LVEYY VA GG +L AL DRPTHLQR Sbjct 9 AEELDVDGVAVRLSNPDKIYYPRLGPEGGTKRHLVEYYLKVATGGELLRALHDRPTHLQR 68 Query 63 FPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHP 122 +PDGV+GE+IYQKR+P RP+++ +C VTFPS R AD L+V A IVWAA +GT+T HP Sbjct 69 YPDGVEGEEIYQKRVPAKRPEHVASCEVTFPSKRTADVLRVRGAADIVWAANLGTVTFHP 128 Query 123 WQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIHV 182 W VRCPD EHPDELRID DPQPGT F +AR VA+DV++ +LD+LGL+G+PKTSGGRG+HV Sbjct 129 WAVRCPDVEHPDELRIDFDPQPGTDFDDARRVALDVMQPLLDELGLIGFPKTSGGRGLHV 188 Query 183 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMAS 242 ++RI WDFVEVRRAGIAL RE+ERR+ D TT+WWKEERG RIF+DFNQNARD+T+AS Sbjct 189 YIRIEPRWDFVEVRRAGIALCREIERRSGDRATTNWWKEERGKRIFLDFNQNARDKTIAS 248 Query 243 AYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLD 302 AYS R TPIATVS P+TWEELA +PDD+T+ TVP L+ R DP A +DDVA S+ LL+ Sbjct 249 AYSARNTPIATVSTPVTWEELASVEPDDFTIATVPALLAGRGDPMATLDDVAHSLDVLLE 308 Query 303 LAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLK 340 +A D GLGD+PYPPN+PKMPGEPKRVQPSRD D K Sbjct 309 MAERDAAVGLGDLPYPPNHPKMPGEPKRVQPSRDRDRK 346 >gi|169627385|ref|YP_001701034.1| hypothetical protein MAB_0280 [Mycobacterium abscessus ATCC 19977] gi|169239352|emb|CAM60380.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=306 Score = 479 bits (1233), Expect = 3e-133, Method: Compositional matrix adjust. Identities = 232/304 (77%), Positives = 263/304 (87%), Gaps = 1/304 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHG-TKRRLVEYYFAVAGGPMLTALRDRPTH 59 M AEELDVDGIAVRL++PD++YFP+LG+ G TKR L EYY VA GPML ALRDRP H Sbjct 1 MPTPAEELDVDGIAVRLSNPDKVYFPRLGADGGTKRHLAEYYRTVAVGPMLHALRDRPAH 60 Query 60 LQRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTIT 119 LQRFPDG+DGE+IYQKR+P+H PDYL +C VTFPSGR A+ L+VT PAAIVWAAQMGT+T Sbjct 61 LQRFPDGIDGEEIYQKRLPKHYPDYLDSCEVTFPSGRTAEVLRVTKPAAIVWAAQMGTVT 120 Query 120 LHPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRG 179 LHPWQVR PD +HPDELRIDLDPQPGTGF EA+ VA++VLR +L++LGLV YPKTSGGRG Sbjct 121 LHPWQVRYPDLDHPDELRIDLDPQPGTGFEEAKVVALEVLRPLLEELGLVAYPKTSGGRG 180 Query 180 IHVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRT 239 IHV+LRIA WDF+EVRRAGIALAREVERRAP VTTSWWKEERG RIFIDFNQNARDRT Sbjct 181 IHVYLRIAARWDFIEVRRAGIALAREVERRAPKQVTTSWWKEERGERIFIDFNQNARDRT 240 Query 240 MASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAP 299 MASAYSVR TPIATVS P+TWEEL A+PDD+T+ TVP L++ R DP AGMDD QSI P Sbjct 241 MASAYSVRRTPIATVSTPVTWEELVDAEPDDFTIATVPALLRKRPDPMAGMDDAPQSIEP 300 Query 300 LLDL 303 LL++ Sbjct 301 LLEM 304 >gi|229488888|ref|ZP_04382754.1| DNA polymerase LigD, polymerase domain [Rhodococcus erythropolis SK121] gi|229324392|gb|EEN90147.1| DNA polymerase LigD, polymerase domain [Rhodococcus erythropolis SK121] Length=346 Score = 467 bits (1202), Expect = 1e-129, Method: Compositional matrix adjust. Identities = 229/345 (67%), Positives = 274/345 (80%), Gaps = 2/345 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHG-TKRRLVEYYFAVA-GGPMLTALRDRPT 58 MA+ AEELDVDGIAVRL+SPD++Y+P+LG G TKR LVEYY VA G L AL+DRPT Sbjct 1 MASPAEELDVDGIAVRLSSPDKIYYPQLGEDGGTKRHLVEYYRTVALQGAALRALQDRPT 60 Query 59 HLQRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTI 118 HLQRFPDG++GE++YQKR+P RP+++++C VTFPSGR AD L+V A IVWAA +GT+ Sbjct 61 HLQRFPDGIEGEEVYQKRLPAKRPEHVESCEVTFPSGRKADVLRVRSAANIVWAANLGTV 120 Query 119 TLHPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGR 178 T HPW VRCPDT+HPDELRIDLDPQPGTGF EA +A +VLR +L +LGL G+PKTSGGR Sbjct 121 TFHPWAVRCPDTDHPDELRIDLDPQPGTGFDEAVAIADEVLRPLLAELGLEGFPKTSGGR 180 Query 179 GIHVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDR 238 G+HV++ + WDFVEVR AGIALAREVERR+ D TT+WWKEERG RIFIDFNQNARDR Sbjct 181 GLHVYIPLEARWDFVEVRHAGIALAREVERRSADRATTAWWKEERGERIFIDFNQNARDR 240 Query 239 TMASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIA 298 T+A+AYS R TPIATVS P+TW+EL PDD T+ TVP L+ R DP M D A ++ Sbjct 241 TIAAAYSARKTPIATVSTPVTWDELRDVHPDDCTIATVPGLLADRGDPMEAMHDKAFALD 300 Query 299 PLLDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGN 343 LL++ D GLGD+PYPPNYPKMPGEPKRVQPS+D D K + Sbjct 301 VLLEMWEKDLAAGLGDLPYPPNYPKMPGEPKRVQPSKDRDRKNKD 345 >gi|226308462|ref|YP_002768422.1| hypothetical protein RER_49750 [Rhodococcus erythropolis PR4] gi|226187579|dbj|BAH35683.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=346 Score = 465 bits (1197), Expect = 4e-129, Method: Compositional matrix adjust. Identities = 228/345 (67%), Positives = 274/345 (80%), Gaps = 2/345 (0%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHG-TKRRLVEYYFAVA-GGPMLTALRDRPT 58 MA+ AEELDVDGIAVRL+SPD++Y+P+LG G TKR LV+YY AVA G L AL+DRPT Sbjct 1 MASPAEELDVDGIAVRLSSPDKIYYPQLGEDGGTKRHLVQYYRAVALQGAALRALQDRPT 60 Query 59 HLQRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTI 118 HLQRFPDG++GE++YQKR+P RP+++++C VTFPSGR AD L+V A IVWAA +GT+ Sbjct 61 HLQRFPDGIEGEEVYQKRLPAKRPEHVESCEVTFPSGRKADVLRVRSAANIVWAANLGTV 120 Query 119 TLHPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGR 178 T HPW VRCPDT+HPDELRIDLDPQPGTGF EA +A +VL +L +LGL G+PKTSGGR Sbjct 121 TFHPWAVRCPDTDHPDELRIDLDPQPGTGFDEAVAIADEVLHPLLAELGLEGFPKTSGGR 180 Query 179 GIHVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDR 238 G+HV++ + WDFVEVR AGIALAREVERR+ D TT+WWKEERG RIFIDFNQNARDR Sbjct 181 GLHVYIPLEARWDFVEVRHAGIALAREVERRSADRATTAWWKEERGERIFIDFNQNARDR 240 Query 239 TMASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIA 298 T+A+AYS R TPIATVS P+TW+EL PDD T+ TVP L+ R DP M D A ++ Sbjct 241 TIAAAYSARKTPIATVSTPVTWDELRDVHPDDCTIATVPGLLADRGDPMEAMHDKAFALD 300 Query 299 PLLDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKGGN 343 LL++ D GLGD+PYPPNYPKMPGEPKRVQPS+D D K + Sbjct 301 VLLEMWEKDLAAGLGDLPYPPNYPKMPGEPKRVQPSKDRDRKNKD 345 >gi|262200435|ref|YP_003271643.1| DNA primase small subunit [Gordonia bronchialis DSM 43247] gi|262083782|gb|ACY19750.1| DNA primase small subunit [Gordonia bronchialis DSM 43247] Length=360 Score = 432 bits (1112), Expect = 3e-119, Method: Compositional matrix adjust. Identities = 210/340 (62%), Positives = 261/340 (77%), Gaps = 7/340 (2%) Query 3 AAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRR-LVEYYFAVA------GGPMLTALRD 55 + AEELDVDG+ VR+++PD++YFP+LG +G ++R LV YY +A GP++ ALRD Sbjct 5 SPAEELDVDGVPVRMSNPDKIYFPELGENGGRKRDLVGYYRTMALGPDGSDGPIMRALRD 64 Query 56 RPTHLQRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQM 115 RPT LQRFPDGV+G++IYQK I + RP+++Q+ R+ FPSGR DA+K T PA +VW A + Sbjct 65 RPTFLQRFPDGVEGDEIYQKHIAKKRPEHVQSTRIVFPSGRTGDAIKPTVPADVVWGANL 124 Query 116 GTITLHPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTS 175 GT+T H W PD +HPD+LRIDLDPQPGT F + R VA+D LR +L++LG G+PKTS Sbjct 125 GTVTFHSWPTVDPDNDHPDQLRIDLDPQPGTTFDDVRRVALDGLRPLLEELGFTGFPKTS 184 Query 176 GGRGIHVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNA 235 GGRG+HVF+ I WDF+ RRA IALARE+ERR PD+VTTSWWKEERG RIFIDFNQNA Sbjct 185 GGRGVHVFVPIEPKWDFIATRRAVIALARELERRDPDSVTTSWWKEERGERIFIDFNQNA 244 Query 236 RDRTMASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQ 295 RDRTMAS YSVR + I VS P+TWEELA DPDD TMTTVP ++ R DPWA + + Sbjct 245 RDRTMASPYSVRRSAIGRVSTPVTWEELADVDPDDCTMTTVPTMISDRGDPWADIAKHRK 304 Query 296 SIAPLLDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSR 335 I LL++ AD+ GLGDMPYPP+YPKMPGEP RVQPS+ Sbjct 305 GIERLLEMVQADDANGLGDMPYPPSYPKMPGEPPRVQPSK 344 >gi|152964621|ref|YP_001360405.1| DNA primase small subunit [Kineococcus radiotolerans SRS30216] gi|151359138|gb|ABS02141.1| DNA primase small subunit [Kineococcus radiotolerans SRS30216] Length=341 Score = 426 bits (1096), Expect = 2e-117, Method: Compositional matrix adjust. Identities = 215/334 (65%), Positives = 255/334 (77%), Gaps = 2/334 (0%) Query 3 AAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQR 62 A AEE+DVDGI VRLTSPD+ Y+P+LG+ G+KR +VE+Y VA +LTAL DRPT+LQR Sbjct 5 APAEEIDVDGIPVRLTSPDKTYYPELGAAGSKRAVVEHYRLVAPV-LLTALGDRPTYLQR 63 Query 63 FPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHP 122 FPDG+ GE++YQKR+PR P+++ T VTFPSGR ADA+ T+ A +VWAAQ T+T HP Sbjct 64 FPDGIAGEEVYQKRVPRFAPEFVDTVHVTFPSGRTADAVLPTNAATLVWAAQQSTVTFHP 123 Query 123 WQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIHV 182 W PD +HPDELRIDLDPQPGTGF +AR VA DVL +L +LG KTSGGRG+HV Sbjct 124 WPCTAPDVDHPDELRIDLDPQPGTGFAQARDVARDVLHPLLTELGYAAAVKTSGGRGVHV 183 Query 183 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMAS 242 F+ I W F EVRRAGIALAREVERRA VTTSWWKEERG +F+D+NQNARDRTMAS Sbjct 184 FVTIEPRWTFTEVRRAGIALAREVERRADGLVTTSWWKEERGETVFVDYNQNARDRTMAS 243 Query 243 AYSVRPTPIATVSMPLTWEELAG-ADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLL 301 AYS+R TP ATVS PLTW+EL DPDD+T+TT P + D WA VA S+ PLL Sbjct 244 AYSLRRTPRATVSTPLTWDELGSDVDPDDFTLTTFPARLAAVGDLWAQRRAVAHSLDPLL 303 Query 302 DLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSR 335 +A D GLGD+PYPP+YPK+PGEPKRVQPSR Sbjct 304 AMADRDAGEGLGDLPYPPSYPKVPGEPKRVQPSR 337 >gi|343926392|ref|ZP_08765897.1| hypothetical protein GOALK_060_00560 [Gordonia alkanivorans NBRC 16433] gi|343763630|dbj|GAA12823.1| hypothetical protein GOALK_060_00560 [Gordonia alkanivorans NBRC 16433] Length=360 Score = 417 bits (1072), Expect = 1e-114, Method: Compositional matrix adjust. Identities = 205/341 (61%), Positives = 257/341 (76%), Gaps = 8/341 (2%) Query 3 AAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRR-LVEYYFAVA-------GGPMLTALR 54 + AEELDVDG+AVRL++PD++YFP+LG +G ++R LV YY +A GP++ A R Sbjct 5 SPAEELDVDGVAVRLSNPDKIYFPELGENGGRKRDLVGYYRTLALGIDDSGDGPLMRATR 64 Query 55 DRPTHLQRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQ 114 DRPT LQRFPDGV+GE+IYQK I + RP+++Q+ + FPS R DA++ T PA +VWAA Sbjct 65 DRPTFLQRFPDGVEGEEIYQKHIAKKRPEHVQSTPIMFPSKRTGDAIRPTVPADLVWAAN 124 Query 115 MGTITLHPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKT 174 +GT+T H W PD +HPD+LRIDLDPQPGT F + R+VA+D L+ +LD+LG G+ KT Sbjct 125 LGTVTFHTWPTLHPDNDHPDQLRIDLDPQPGTTFDDVRSVAIDGLKPLLDELGFTGFVKT 184 Query 175 SGGRGIHVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQN 234 SGGRGIHV++ I WDF+ RR IA+ARE+ERR PD VTTSWWKEERG RIFIDFNQN Sbjct 185 SGGRGIHVYVPIEPLWDFIATRRCVIAIARELERRDPDRVTTSWWKEERGERIFIDFNQN 244 Query 235 ARDRTMASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVA 294 ARDRTMAS YSVR + I VS P+TW ELA DPDD TM TVP+L++ R DPW + D Sbjct 245 ARDRTMASPYSVRRSAIGRVSTPVTWGELADVDPDDCTMATVPKLLERRGDPWTDIADHR 304 Query 295 QSIAPLLDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSR 335 + I LL++ D+ GLGDMPYPP+YPKMPGEP RVQPS+ Sbjct 305 RGIEKLLEMVQQDDADGLGDMPYPPSYPKMPGEPPRVQPSK 345 >gi|117928585|ref|YP_873136.1| hypothetical protein Acel_1378 [Acidothermus cellulolyticus 11B] gi|117649048|gb|ABK53150.1| conserved hypothetical protein [Acidothermus cellulolyticus 11B] Length=339 Score = 408 bits (1049), Expect = 7e-112, Method: Compositional matrix adjust. Identities = 205/332 (62%), Positives = 248/332 (75%), Gaps = 5/332 (1%) Query 5 AEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQRFP 64 A EL V G VR++ P ++YFP LG+ TK LV YY AV G ++ AL +RP LQRFP Sbjct 4 AVELTVGGRTVRISHPGKLYFPALGA--TKLDLVRYYLAVGDG-IVRALYERPCTLQRFP 60 Query 65 DGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHPWQ 124 DGVDG+ I+QKR+P RPD++QT RV FPSGR AD L V AA++WA MGTI HPW Sbjct 61 DGVDGKMIFQKRVPASRPDWIQTARVQFPSGRQADELCVIDFAAVIWAVNMGTIVFHPWP 120 Query 125 VRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIHVFL 184 R PDTEHPDELRIDLDPQPGTGF E R V ++ +LD+LG G+PKTSGGRG+HV + Sbjct 121 SRRPDTEHPDELRIDLDPQPGTGFAEVRAVG-RLVHELLDELGYRGFPKTSGGRGLHVLV 179 Query 185 RIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMASAY 244 RI +WDFV VRRA +A ARE+ERRAP T++WWKEERGARIF+DFNQNARDRT+A+AY Sbjct 180 RIRPEWDFVAVRRAALAFAREIERRAPQLATSAWWKEERGARIFLDFNQNARDRTIAAAY 239 Query 245 SVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLDLA 304 SVR P ATVS P++W EL A+PDD+T+ TVPE D +DD+A ++PLL++A Sbjct 240 SVRANPRATVSTPISWAELDDAEPDDFTIATVPERFAAIGDLHRTIDDIAHDLSPLLEMA 299 Query 305 AAD-EERGLGDMPYPPNYPKMPGEPKRVQPSR 335 D +RGLGD PYPPN+PKMPGEP RVQPSR Sbjct 300 DRDVRDRGLGDAPYPPNFPKMPGEPVRVQPSR 331 >gi|326383540|ref|ZP_08205226.1| DNA primase small subunit [Gordonia neofelifaecis NRRL B-59395] gi|326197624|gb|EGD54812.1| DNA primase small subunit [Gordonia neofelifaecis NRRL B-59395] Length=346 Score = 398 bits (1022), Expect = 7e-109, Method: Compositional matrix adjust. Identities = 193/330 (59%), Positives = 243/330 (74%), Gaps = 2/330 (0%) Query 8 LDVDGIAVRLTSPDRMYFPKLGSHGTKR-RLVEYYFAVA-GGPMLTALRDRPTHLQRFPD 65 LDVDG+ V+LT+PD++YFP+LG +G ++ LV+YY +A GP+LTA+ RPT LQRFPD Sbjct 3 LDVDGVEVKLTNPDKIYFPELGENGGRKGDLVDYYRTIALAGPLLTAIAGRPTFLQRFPD 62 Query 66 GVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHPWQV 125 GVDGEQIYQK +P++ PD++++ R+ FPS R A PA +VWAA +GT T H W Sbjct 63 GVDGEQIYQKHLPKYHPDHVESTRIVFPSKRSGQAFCPRLPADVVWAANLGTFTFHTWPT 122 Query 126 RCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIHVFLR 185 D +HPD+LRIDLDP G F + R VA+D++R LD++G+ G+ KTSG RGIHVF+ Sbjct 123 HSEDNDHPDQLRIDLDPPDGKSFDDVRRVALDLVRPFLDEVGMTGFAKTSGSRGIHVFVP 182 Query 186 IATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMASAYS 245 I +WDF+ RRA IAL RE+ERR P AVTTSWWKEERG RIFID+NQNARDR+MAS YS Sbjct 183 IRPEWDFIATRRAVIALGRELERRDPAAVTTSWWKEERGDRIFIDYNQNARDRSMASPYS 242 Query 246 VRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLDLAA 305 R +P A VS P+TW+EL DP+D T+ TVP LV R DPWA +DD + LL++ Sbjct 243 ARKSPRARVSTPVTWDELVDVDPEDLTIATVPSLVDRRGDPWADIDDQRSGLEKLLEMVE 302 Query 306 ADEERGLGDMPYPPNYPKMPGEPKRVQPSR 335 DE GLGDM YPP+YPKMPGEP RVQPS+ Sbjct 303 RDEAAGLGDMVYPPSYPKMPGEPPRVQPSK 332 >gi|302866130|ref|YP_003834767.1| DNA polymerase LigD polymerase subunit [Micromonospora aurantiaca ATCC 27029] gi|302568989|gb|ADL45191.1| DNA polymerase LigD, polymerase domain protein [Micromonospora aurantiaca ATCC 27029] Length=341 Score = 392 bits (1008), Expect = 3e-107, Method: Compositional matrix adjust. Identities = 204/337 (61%), Positives = 245/337 (73%), Gaps = 5/337 (1%) Query 3 AAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQR 62 A EE++V G AVRL+SPDR+ FP+ G TK + YY AV G ++ ALRDRPT LQR Sbjct 5 GAVEEIEVAGHAVRLSSPDRVIFPQRGF--TKADVFRYYLAVGDG-IMRALRDRPTTLQR 61 Query 63 FPDGVDGEQIYQKRIP-RHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLH 121 FPDG++GE +QKR+P R P ++ T R+ FPSGR AD L A + WAAQMGT+ H Sbjct 62 FPDGIEGEMFFQKRVPQRGVPPWVSTARIAFPSGRPADELCPADLAHVAWAAQMGTVVFH 121 Query 122 PWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIH 181 PW VR DT+ PDELR+DLDPQPGT F +A T A + LR +LD+LG+ G+PKTSGGRG+H Sbjct 122 PWPVRAADTDRPDELRVDLDPQPGTDFADAVTAAGE-LRGLLDELGVPGWPKTSGGRGVH 180 Query 182 VFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMA 241 V+LRI W FVEVRRA IALARE+ERR P+ VTT+WWKEERG R+F+DFNQ ARDRT+A Sbjct 181 VYLRIQPRWTFVEVRRATIALARELERRRPELVTTAWWKEERGERVFVDFNQMARDRTIA 240 Query 242 SAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLL 301 AYS+R ATVS P+ W+EL DPDD+ + TVP R DP AG+DD I PLL Sbjct 241 CAYSLRANARATVSTPVGWDELPEVDPDDFHLGTVPARFAERGDPHAGIDDAPWDITPLL 300 Query 302 DLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTD 338 + A D GLGDMPYPP YPKMPGEPKRVQPS+D D Sbjct 301 EWAERDAADGLGDMPYPPEYPKMPGEPKRVQPSKDRD 337 >gi|315502687|ref|YP_004081574.1| DNA polymerase ligd, polymerase domain-containing protein [Micromonospora sp. L5] gi|315409306|gb|ADU07423.1| DNA polymerase LigD, polymerase domain protein [Micromonospora sp. L5] Length=341 Score = 392 bits (1007), Expect = 4e-107, Method: Compositional matrix adjust. Identities = 203/337 (61%), Positives = 244/337 (73%), Gaps = 5/337 (1%) Query 3 AAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQR 62 A EE++V G AVRL+SPDR+ FP+ G TK + YY AV G ++ ALRDRPT LQR Sbjct 5 GAVEEIEVAGHAVRLSSPDRVIFPQRGF--TKADVFRYYLAVGDG-IMRALRDRPTTLQR 61 Query 63 FPDGVDGEQIYQKRIP-RHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLH 121 FPDG++GE +QKR+P R P ++ T R+ FPSGR AD L A + WAAQMGT+ H Sbjct 62 FPDGIEGEMFFQKRVPQRGVPPWVSTARIAFPSGRPADELCPADLAHVAWAAQMGTVVFH 121 Query 122 PWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIH 181 PW VR DT+ PDELR+DLDPQPGT F +A T A + LR +LD+LG+ G+PKTSGGRG+H Sbjct 122 PWPVRAADTDRPDELRVDLDPQPGTDFADAVTAAAE-LRGLLDELGVPGWPKTSGGRGVH 180 Query 182 VFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMA 241 V+LRI W FVEVRRA IALARE+ERR P+ VTT+WWKEERG R+F+DFNQ ARDRT+A Sbjct 181 VYLRIQPRWTFVEVRRATIALARELERRRPELVTTAWWKEERGERVFVDFNQMARDRTIA 240 Query 242 SAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLL 301 AYS+R ATVS P+ W+EL DPDD+ + TVP R DP G+DD I PLL Sbjct 241 CAYSLRANARATVSTPVDWDELPEVDPDDFHLGTVPARFAERGDPHVGIDDAPWDITPLL 300 Query 302 DLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTD 338 + A D GLGDMPYPP YPKMPGEPKRVQPS+D D Sbjct 301 EWAERDAADGLGDMPYPPEYPKMPGEPKRVQPSKDRD 337 >gi|271967970|ref|YP_003342166.1| DNA primase small subunit [Streptosporangium roseum DSM 43021] gi|270511145|gb|ACZ89423.1| DNA primase small subunit [Streptosporangium roseum DSM 43021] Length=334 Score = 390 bits (1002), Expect = 2e-106, Method: Compositional matrix adjust. Identities = 205/338 (61%), Positives = 243/338 (72%), Gaps = 7/338 (2%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 MA+ EL V V++T+PD++YFP++G+ TKR LVEYY +V G L AL DRPT+L Sbjct 1 MASPYIELTVGDRVVKVTNPDKVYFPEIGA--TKRDLVEYYVSVGEG-ALRALYDRPTYL 57 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 +R PDGV+ E IYQKR+P P++LQT V FPSGR ADAL+VT AAI + A +GT+ Sbjct 58 KRHPDGVETEGIYQKRMPPRHPEWLQTVTVRFPSGRTADALRVTEVAAIAYCANLGTVDF 117 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPW VR D +HPDELRID+DPQPGTGF EAR VA V +L +LG+ G+PKTSG RGI Sbjct 118 HPWPVRSCDVDHPDELRIDIDPQPGTGFEEARRVAFAV-NEILGELGMTGFPKTSGSRGI 176 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HV LRI WDF +VR A IA AREVE R PD TT+WWKEERG R+FID+NQNARDRT+ Sbjct 177 HVSLRIEPRWDFTQVRHAAIAFAREVESRVPDLATTAWWKEERGERVFIDYNQNARDRTV 236 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 A+AYSVR P A VS PLTWEEL ADP D+ + TVP D A +DD A SI PL Sbjct 237 AAAYSVRAKPHAPVSTPLTWEELVDADPRDFDIRTVPARFAKLGDVHAAIDDRAFSIEPL 296 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTD 338 L+ D+ GDMPYPPNYPKMPGEPKRVQPS+ D Sbjct 297 LEWFERDDR---GDMPYPPNYPKMPGEPKRVQPSKARD 331 >gi|302537915|ref|ZP_07290257.1| DNA polymerase LigD, polymerase domain-containing protein [Streptomyces sp. C] gi|302446810|gb|EFL18626.1| DNA polymerase LigD, polymerase domain-containing protein [Streptomyces sp. C] Length=340 Score = 390 bits (1001), Expect = 2e-106, Method: Compositional matrix adjust. Identities = 202/335 (61%), Positives = 247/335 (74%), Gaps = 5/335 (1%) Query 2 AAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQ 61 A A EL+ G AVRL+SPD++YFP+ G TKR + EYY AVA G + ALRDRPT L+ Sbjct 5 AGGAIELEAGGRAVRLSSPDKVYFPERGL--TKRDVAEYYLAVADG-ITRALRDRPTTLE 61 Query 62 RFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLH 121 R+PDGV+GE +QKR P++ PD++ T + FPSGR AD + T PAA++WAA +G +T H Sbjct 62 RYPDGVEGESFFQKRAPKNLPDWIPTAHIAFPSGRTADEICPTEPAAVLWAANLGCLTFH 121 Query 122 PWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIH 181 PW VR DT+ PDELRIDLDPQPGT + A A LR++LD+LGL G+PKTSGGRG+H Sbjct 122 PWPVRRGDTDRPDELRIDLDPQPGTDYHHA-VAAAHELRALLDELGLRGWPKTSGGRGLH 180 Query 182 VFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMA 241 VF+ IA W F EVR IAL RE+ERR P VTT+WWKEERG RIF+D+NQ ARDRT+A Sbjct 181 VFVPIAPRWTFTEVRSCAIALGRELERRMPGKVTTAWWKEERGERIFVDYNQTARDRTIA 240 Query 242 SAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLL 301 SAYSVRP P A VS PL W+E+ A+P D+ + T+P D A MDD A S+ P+L Sbjct 241 SAYSVRPRPHAPVSAPLRWDEVDDAEPRDFDIVTMPARFAELGDLHADMDDHAFSLEPVL 300 Query 302 DLAAADE-ERGLGDMPYPPNYPKMPGEPKRVQPSR 335 +LAA DE + GLGDMPYPP+YPKMPGEPKRVQPSR Sbjct 301 ELAARDEHDHGLGDMPYPPDYPKMPGEPKRVQPSR 335 >gi|326444367|ref|ZP_08219101.1| hypothetical protein SclaA2_25016 [Streptomyces clavuligerus ATCC 27064] Length=350 Score = 388 bits (997), Expect = 7e-106, Method: Compositional matrix adjust. Identities = 201/342 (59%), Positives = 247/342 (73%), Gaps = 5/342 (1%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 MAA A EL+V VR+++PD++YFP+ G TK +V YY AV G + ALRDRPT L Sbjct 13 MAAKALELEVGDRTVRVSNPDKVYFPERGY--TKLDMVTYYLAVGEG-ITRALRDRPTTL 69 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 +R+PDGV GE +QKR P++ PD++ T +TFPSGR AD + T PAA+VWAA +G +T Sbjct 70 ERYPDGVTGESFFQKRAPKYLPDWIPTAHITFPSGRSADEMCPTEPAAVVWAANLGAVTF 129 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPW VR D +HPDELR+DLDPQPGTG+ +A A LR+VLD+ GL G+PKTSGGRG+ Sbjct 130 HPWPVRRADPDHPDELRLDLDPQPGTGYADA-VRAAHELRAVLDEHGLCGWPKTSGGRGL 188 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 H+F+ IA W F +VRRA IA RE+ERR PD VT WWKEERG RIF+D+NQ ARDRT+ Sbjct 189 HIFVPIAPRWTFTQVRRAAIACGRELERRMPDRVTIKWWKEERGERIFVDYNQTARDRTI 248 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYSVRP P A VS PL WEE+ A P+D+ +TT+P D A MD+ + PL Sbjct 249 ASAYSVRPRPHAPVSAPLRWEEIDDAVPEDFDITTMPTRYAELGDVHADMDEHRFGLEPL 308 Query 301 LDLAAADE-ERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKG 341 L+LA DE E GLGD+PYPP YPKMPGEPKRVQPSR D +G Sbjct 309 LELARRDEAEHGLGDLPYPPEYPKMPGEPKRVQPSRARDPEG 350 >gi|254393498|ref|ZP_05008635.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294816025|ref|ZP_06774668.1| DNA primase, small subunit [Streptomyces clavuligerus ATCC 27064] gi|197707122|gb|EDY52934.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294328624|gb|EFG10267.1| DNA primase, small subunit [Streptomyces clavuligerus ATCC 27064] Length=338 Score = 388 bits (997), Expect = 7e-106, Method: Compositional matrix adjust. Identities = 201/342 (59%), Positives = 248/342 (73%), Gaps = 5/342 (1%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 MAA A EL+V VR+++PD++YFP+ G TK +V YY AV G + ALRDRPT L Sbjct 1 MAAKALELEVGDRTVRVSNPDKVYFPERGY--TKLDMVTYYLAVGEG-ITRALRDRPTTL 57 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 +R+PDGV GE +QKR P++ PD++ T +TFPSGR AD + T PAA+VWAA +G +T Sbjct 58 ERYPDGVTGESFFQKRAPKYLPDWIPTAHITFPSGRSADEMCPTEPAAVVWAANLGAVTF 117 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPW VR D +HPDELR+DLDPQPGTG+ +A A + LR+VLD+ GL G+PKTSGGRG+ Sbjct 118 HPWPVRRADPDHPDELRLDLDPQPGTGYADAVRAAHE-LRAVLDEHGLCGWPKTSGGRGL 176 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 H+F+ IA W F +VRRA IA RE+ERR PD VT WWKEERG RIF+D+NQ ARDRT+ Sbjct 177 HIFVPIAPRWTFTQVRRAAIACGRELERRMPDRVTIKWWKEERGERIFVDYNQTARDRTI 236 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYSVRP P A VS PL WEE+ A P+D+ +TT+P D A MD+ + PL Sbjct 237 ASAYSVRPRPHAPVSAPLRWEEIDDAVPEDFDITTMPTRYAELGDVHADMDEHRFGLEPL 296 Query 301 LDLAAADE-ERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKG 341 L+LA DE E GLGD+PYPP YPKMPGEPKRVQPSR D +G Sbjct 297 LELARRDEAEHGLGDLPYPPEYPKMPGEPKRVQPSRARDPEG 338 >gi|317505952|ref|ZP_07963784.1| DNA polymerase LigD [Segniliparus rugosus ATCC BAA-974] gi|316255728|gb|EFV14966.1| DNA polymerase LigD [Segniliparus rugosus ATCC BAA-974] Length=343 Score = 387 bits (994), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 203/341 (60%), Positives = 252/341 (74%), Gaps = 11/341 (3%) Query 3 AAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYY--FAVAGGPMLTALRDRPTHL 60 A AEE++V+GI+VRL++PD++YFP+LG G+KR L E+Y AVA GP+L ALR RP +L Sbjct 12 APAEEVEVEGISVRLSNPDKVYFPELGPRGSKRALFEHYRKLAVADGPILRALRGRPVNL 71 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDG++GE IYQK P+ +PDY+ T +VTFPSGR AD++ V PA ++WA +GT+T Sbjct 72 QRFPDGIEGEAIYQKHAPKGKPDYVATAQVTFPSGRHADSVVVERPADVLWAVNLGTVTF 131 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPW PDTEHPDELR+DLDPQPGT F +AR +A+DVLR VL + GL G PKTSGGRG+ Sbjct 132 HPWPCHVPDTEHPDELRVDLDPQPGTTFADARRIALDVLRPVLGEFGLAGVPKTSGGRGL 191 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HV + I W FV+VRRAGIALA+EV RR+ D T SWWKEERG RIFID+NQNARDRT+ Sbjct 192 HVLIPIQPRWGFVDVRRAGIALAQEVVRRSGDRATLSWWKEERGERIFIDYNQNARDRTL 251 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 A+ YSVR TP ATVSMPLTW L A+P D+T+ + + DP+AG + S+ L Sbjct 252 AAPYSVRATPAATVSMPLTWAALEDAEPGDFTVENAADYALGQPDPFAGQE--PGSLERL 309 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTDLKG 341 L E+ +PYPP YPKMP EPKRVQPS+D D KG Sbjct 310 L-------EQETPLLPYPPQYPKMPDEPKRVQPSKDKDRKG 343 >gi|145594090|ref|YP_001158387.1| DNA primase, small subunit [Salinispora tropica CNB-440] gi|145303427|gb|ABP54009.1| DNA primase, small subunit [Salinispora tropica CNB-440] Length=341 Score = 384 bits (986), Expect = 1e-104, Method: Compositional matrix adjust. Identities = 197/337 (59%), Positives = 246/337 (73%), Gaps = 5/337 (1%) Query 3 AAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQR 62 AAAEE+ V G VRL+SPDR+ FP+ G TK + YY AV G ++ AL +RPT LQR Sbjct 6 AAAEEIKVAGQHVRLSSPDRVIFPQRGF--TKADVFHYYLAVGPG-IMRALGERPTTLQR 62 Query 63 FPDGVDGEQIYQKRIP-RHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLH 121 FP+G++GE +QKR+P R P +++T +++FPSGR A L A + WAAQMGT+ H Sbjct 63 FPEGIEGEAFFQKRVPARGVPPWVRTAQISFPSGRKAAELCPADLAHVAWAAQMGTVVFH 122 Query 122 PWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIH 181 PW VR D +HPDELR+DLDPQPGT F +A A + LR++L +LG+ G+PKTSGGRG+H Sbjct 123 PWPVRATDPDHPDELRLDLDPQPGTDFADAAKAATE-LRAILAELGVPGWPKTSGGRGVH 181 Query 182 VFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMA 241 V+LRI W FVEVRRA IALARE+ERR PD VTT+WWKEERGAR+F+DFNQ ARDRT+A Sbjct 182 VYLRIQPRWTFVEVRRATIALARELERRRPDLVTTAWWKEERGARVFVDFNQMARDRTIA 241 Query 242 SAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLL 301 AYS+R ATVS PL W+ELA A+PDD+ + +VP + DP AG+DD A I PLL Sbjct 242 CAYSLRANARATVSTPLAWDELADAEPDDFDLRSVPARLAEGGDPHAGIDDAAWDITPLL 301 Query 302 DLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTD 338 + D G GD+PYPP +PKMPGEPKRVQPS+D D Sbjct 302 EWVERDAANGQGDLPYPPEHPKMPGEPKRVQPSKDRD 338 >gi|291455297|ref|ZP_06594687.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291358246|gb|EFE85148.1| conserved hypothetical protein [Streptomyces albus J1074] Length=339 Score = 383 bits (984), Expect = 2e-104, Method: Compositional matrix adjust. Identities = 198/336 (59%), Positives = 246/336 (74%), Gaps = 5/336 (1%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 M + A +L+VDG +VRL+ PD+++FP+ G TK + +Y+ AV GG + ALR RPT L Sbjct 1 MGSEAVQLEVDGHSVRLSHPDKVWFPERGF--TKLDVAQYFLAVQGG-VTRALRRRPTTL 57 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 QRFPDGVDGE YQKR P+++PD+L T R++FPSGR AD + PAA++WA +G +T Sbjct 58 QRFPDGVDGEFFYQKRAPKNKPDWLDTARISFPSGRHADEICPDSPAAVLWAVNLGCLTF 117 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPW VR PDTEHPDELR+DLDPQPGT F +A A LR +LD+ GL G+PKTSGGRG+ Sbjct 118 HPWPVRAPDTEHPDELRVDLDPQPGTDFRDA-VAAAQTLREILDEYGLRGWPKTSGGRGL 176 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVF+ I FVEVRRA IALARE+ERR P+ VTT+WWKEERG RIF+D+NQ ARDRT+ Sbjct 177 HVFIPIEPVEPFVEVRRAAIALAREIERRMPERVTTAWWKEERGERIFVDYNQTARDRTI 236 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 A AYSVR P A VS PL W+EL ADP D+ + T+ D A +DD A + PL Sbjct 237 AGAYSVRGKPHAPVSAPLRWDELDDADPRDFDLLTMQARYAALGDVHADIDDHAYRLDPL 296 Query 301 LDLAAAD-EERGLGDMPYPPNYPKMPGEPKRVQPSR 335 L+LAA D E GL D+PYPP++PKMPGEP+RVQPSR Sbjct 297 LELAARDAAEHGLEDLPYPPDHPKMPGEPRRVQPSR 332 >gi|329937072|ref|ZP_08286701.1| ATP-dependent DNA ligase [Streptomyces griseoaurantiacus M045] gi|329303679|gb|EGG47564.1| ATP-dependent DNA ligase [Streptomyces griseoaurantiacus M045] Length=352 Score = 383 bits (984), Expect = 2e-104, Method: Compositional matrix adjust. Identities = 206/333 (62%), Positives = 245/333 (74%), Gaps = 6/333 (1%) Query 5 AEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQRFP 64 A EL V G VRL+SPD+++FP+ G TK + YY AVA G +L ALRDRPT LQR+P Sbjct 4 AVELRVAGRTVRLSSPDKVFFPERGF--TKLDVARYYQAVAPG-ILRALRDRPTTLQRYP 60 Query 65 DGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHPWQ 124 DGV+GE YQKR P+ PD++ T +TFPSGR AD + T AA++WAAQ GT+T HPW Sbjct 61 DGVEGEWFYQKRAPKSMPDWIPTAHITFPSGRSADEMCPTEEAAVLWAAQYGTLTFHPWP 120 Query 125 VRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLG-LVGYPKTSGGRGIHVF 183 VR D +HPDELRIDLDPQPGTG+ EA A LRSVL++ G L G+PKTSGGRG+HVF Sbjct 121 VRRGDVDHPDELRIDLDPQPGTGYPEA-VHAAHELRSVLEEFGGLRGWPKTSGGRGLHVF 179 Query 184 LRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMASA 243 + I W F +VRRA IA+AREVERR PD VTT+WWKEERGA+IF+D+NQ ARDRT+ASA Sbjct 180 VPIEPRWTFTQVRRAAIAVAREVERRMPDRVTTAWWKEERGAKIFVDYNQTARDRTIASA 239 Query 244 YSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLDL 303 YSVRP P A VS PL WEE+A A P D+ + T+P D A MD A S+ LL+L Sbjct 240 YSVRPEPHAPVSAPLRWEEVAEARPRDFDLGTMPRRFAELGDVHADMDAHAYSLDALLEL 299 Query 304 AAADE-ERGLGDMPYPPNYPKMPGEPKRVQPSR 335 A DE + GLGD+PYPP YPKMPGEPKRVQPSR Sbjct 300 ARRDEHDHGLGDLPYPPEYPKMPGEPKRVQPSR 332 >gi|291449041|ref|ZP_06588431.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291351988|gb|EFE78892.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length=340 Score = 381 bits (979), Expect = 7e-104, Method: Compositional matrix adjust. Identities = 204/335 (61%), Positives = 247/335 (74%), Gaps = 7/335 (2%) Query 3 AAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLT-ALRDRPTHLQ 61 AA ELD G AVRL++PD++YFP+ G TKR + EY+ AV GP +T AL RPT LQ Sbjct 2 GAAVELDAGGRAVRLSNPDKVYFPEKGY--TKRDVAEYFLAV--GPGITRALNHRPTTLQ 57 Query 62 RFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLH 121 RF DGV+G+ YQKR P++ P+++ T R+ FPSGR AD + T AA++WAA +GT+T H Sbjct 58 RFVDGVEGDFFYQKRAPKNLPEWIPTARIAFPSGRPADEICPTELAAVIWAANLGTLTFH 117 Query 122 PWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIH 181 PW VR DT+HPDELRIDLDPQPGT + +A T A + LRSVL+D G+ G+PKTSGGRG+H Sbjct 118 PWPVRAGDTDHPDELRIDLDPQPGTDYADAVTAAHE-LRSVLEDHGVRGWPKTSGGRGMH 176 Query 182 VFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMA 241 VF+ I W FVEVRRA IA RE+ERR P+ VTT+WWKEERG RIF+DFNQ ARDRT+A Sbjct 177 VFVPIEPAWSFVEVRRAAIAAGRELERRMPERVTTAWWKEERGERIFVDFNQTARDRTIA 236 Query 242 SAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLL 301 SAYSVRP P A VS PL W+E+ A+P D+ + T+P D A MD A + LL Sbjct 237 SAYSVRPFPHAPVSAPLRWDEIDDAEPRDFDIRTLPVRYAELGDVHADMDQEAFRLDGLL 296 Query 302 DLAAADE-ERGLGDMPYPPNYPKMPGEPKRVQPSR 335 +LA DE ERGLGDMPYPP YPKMPGEPKRVQPSR Sbjct 297 ELADRDEKERGLGDMPYPPEYPKMPGEPKRVQPSR 331 >gi|182434816|ref|YP_001822535.1| hypothetical protein SGR_1023 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463332|dbj|BAG17852.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length=345 Score = 381 bits (979), Expect = 8e-104, Method: Compositional matrix adjust. Identities = 204/335 (61%), Positives = 246/335 (74%), Gaps = 7/335 (2%) Query 3 AAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLT-ALRDRPTHLQ 61 AA ELD G AVRL++PD++YFP+ G TKR + EY+ AV GP +T AL RPT LQ Sbjct 2 GAAVELDAGGRAVRLSNPDKVYFPQKGY--TKRDVAEYFLAV--GPGITRALNHRPTTLQ 57 Query 62 RFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLH 121 RF DGV+G+ YQKR P++ P+++ T R+ FPSGR AD + T AA++WAA +GT+T H Sbjct 58 RFVDGVEGDFFYQKRAPKNLPEWIPTARIAFPSGRPADEICPTELAAVIWAANLGTLTFH 117 Query 122 PWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIH 181 PW VR DT+HPDELRIDLDPQPGT + +A T A + LRSVL+D G+ G+PKTSGGRG+H Sbjct 118 PWPVRAGDTDHPDELRIDLDPQPGTDYADAVTAAHE-LRSVLEDHGVRGWPKTSGGRGMH 176 Query 182 VFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMA 241 VF+ I W FVEVRRA IA RE+ERR P+ VTT+WWKEERG RIF+DFNQ ARDRT+A Sbjct 177 VFVPIEPAWTFVEVRRAAIAAGRELERRMPERVTTAWWKEERGERIFVDFNQTARDRTIA 236 Query 242 SAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLL 301 SAYSVRP P A VS PL WEE+ A+P D+ + T+P D A MD A + LL Sbjct 237 SAYSVRPFPHAPVSAPLRWEEIDDAEPRDFDIRTLPVRYAELGDVHADMDQEAFRLDALL 296 Query 302 DLAAADE-ERGLGDMPYPPNYPKMPGEPKRVQPSR 335 + A DE ERGLGDMPYPP YPKMPGEPKRVQPSR Sbjct 297 ESADRDERERGLGDMPYPPEYPKMPGEPKRVQPSR 331 >gi|302522909|ref|ZP_07275251.1| DNA polymerase LigD, polymerase domain-containing protein [Streptomyces sp. SPB78] gi|318060535|ref|ZP_07979258.1| hypothetical protein SSA3_21513 [Streptomyces sp. SA3_actG] gi|318076050|ref|ZP_07983382.1| hypothetical protein SSA3_04879 [Streptomyces sp. SA3_actF] gi|333023251|ref|ZP_08451315.1| putative DNA polymerase LigD, polymerase domain-containing protein [Streptomyces sp. Tu6071] gi|302431804|gb|EFL03620.1| DNA polymerase LigD, polymerase domain-containing protein [Streptomyces sp. SPB78] gi|332743103|gb|EGJ73544.1| putative DNA polymerase LigD, polymerase domain-containing protein [Streptomyces sp. Tu6071] Length=337 Score = 381 bits (978), Expect = 1e-103, Method: Compositional matrix adjust. Identities = 193/335 (58%), Positives = 238/335 (72%), Gaps = 4/335 (1%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 MA AEEL G VR++ PD++Y+P+ G TKR + EYY V G M ALR RPT L Sbjct 1 MADEAEELTAGGRTVRISHPDKIYYPRPGY--TKRDVAEYYLTVGEG-MTRALRARPTTL 57 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 +R+P+GV+G +QKR P++ P +L+T R++FPSGR AD L PAAI+WAA +G + Sbjct 58 ERYPEGVEGGSFFQKRAPKNHPSWLRTARISFPSGRYADELCPEEPAAILWAANLGGLVF 117 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPW VR DTEHPDELR+DLDPQPGT LR +LD+LGL G+PKTSGGRG+ Sbjct 118 HPWAVRAEDTEHPDELRLDLDPQPGT-AFAEAVAVAVELRGLLDELGLRGFPKTSGGRGL 176 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 HVF+ I WDF VRRA IA+ RE+ERR P VTT WWKEERG RIF+D+NQNARDRT+ Sbjct 177 HVFVPIEPRWDFAGVRRAAIAVGRELERRMPGKVTTHWWKEERGERIFLDYNQNARDRTI 236 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 A+AYS+R P A VS PLTW+E+ ADP D+ + T+ + R D A MD+ S+ PL Sbjct 237 AAAYSLRARPHAPVSAPLTWDEVPDADPRDFDLRTMVTRYRERGDVHADMDERRYSLEPL 296 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSR 335 LDLAA DE GLG++PYPP+YPKMPGEP RVQPSR Sbjct 297 LDLAARDESEGLGELPYPPDYPKMPGEPSRVQPSR 331 >gi|256375706|ref|YP_003099366.1| DNA polymerase LigD, polymerase domain-containing protein [Actinosynnema mirum DSM 43827] gi|255920009|gb|ACU35520.1| DNA polymerase LigD, polymerase domain protein [Actinosynnema mirum DSM 43827] Length=330 Score = 380 bits (976), Expect = 2e-103, Method: Compositional matrix adjust. Identities = 200/333 (61%), Positives = 245/333 (74%), Gaps = 7/333 (2%) Query 3 AAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHLQR 62 A A EL V VR+++PD++YFP+ G TKR++VEYY AVA P+L LRDRPT L+R Sbjct 2 AQALELTVGERVVRVSNPDKVYFPERGI--TKRQVVEYYLAVAE-PLLAVLRDRPTTLKR 58 Query 63 FPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHP 122 F DGV GE YQKR+P+ P++++T V FPSGR A+ ++ T A + WAA +GT+ HP Sbjct 59 FVDGVAGEAFYQKRVPKGAPEWVRTVGVRFPSGRPAEQVRPTEAAVLAWAANLGTLDFHP 118 Query 123 WQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIHV 182 W VR DT+HPDELR+DLDPQPGTGF EA VA VLR VL +LG+ GYPKTSGGRG+HV Sbjct 119 WPVRAGDTDHPDELRVDLDPQPGTGFREAVEVA-GVLREVLGELGMTGYPKTSGGRGVHV 177 Query 183 FLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMAS 242 +RI +WDFV+VR A IAL REVERRAPD TTSWWKEERG ++F+DFNQ ARDRT+AS Sbjct 178 AVRIRPEWDFVDVRHAVIALGREVERRAPDLATTSWWKEERGRKVFLDFNQAARDRTIAS 237 Query 243 AYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLD 302 A+SVR TP ATVS P+TWE L ADP + + TVP+ ++ DP AG+D A I LL Sbjct 238 AWSVRGTPGATVSTPVTWESLGEADPVAFDVRTVPDYLRDVGDPHAGLDGEAFGIEELLG 297 Query 303 LAAADEERGLGDMPYPPNYPKMPGEPKRVQPSR 335 A D G++PYPP+YPKMPGEP RVQPSR Sbjct 298 WYANDPR---GELPYPPDYPKMPGEPPRVQPSR 327 >gi|296270229|ref|YP_003652861.1| DNA polymerase LigD polymerase domain-containing subunit [Thermobispora bispora DSM 43833] gi|296093016|gb|ADG88968.1| DNA polymerase LigD, polymerase domain protein [Thermobispora bispora DSM 43833] Length=332 Score = 380 bits (976), Expect = 2e-103, Method: Compositional matrix adjust. Identities = 200/338 (60%), Positives = 242/338 (72%), Gaps = 8/338 (2%) Query 1 MAAAAEELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLTALRDRPTHL 60 MA+ EL+ +RLT+PD++YFP +G+ TKR LVEYY +V G +L A+RDRPT+L Sbjct 1 MASPYIELEAGARVIRLTNPDKIYFPGVGA--TKRDLVEYYLSVGDG-VLRAMRDRPTYL 57 Query 61 QRFPDGVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITL 120 +R PDGV E IYQKR+PRH P++++T V FPSGR A AL T AAI W +GTI Sbjct 58 KRHPDGVSSEAIYQKRLPRH-PEWIETVTVRFPSGRTAAALCPTEIAAIAWCVNLGTIDF 116 Query 121 HPWQVRCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGI 180 HPW VR D +HPDELRID+DPQPGT F +ART A V R +L +LG+ GYPKTSGGRG+ Sbjct 117 HPWPVRKTDLDHPDELRIDVDPQPGTTFEDARTAAFAV-RDLLAELGMTGYPKTSGGRGL 175 Query 181 HVFLRIATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTM 240 H+ +RI W F EVR A IA AREVERR P+ VTT+WWKEERGA+IF+DFNQNARDRT+ Sbjct 176 HISVRIRPRWTFTEVRHAAIAFAREVERRMPELVTTAWWKEERGAKIFLDFNQNARDRTI 235 Query 241 ASAYSVRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPL 300 ASAYSVR P A VS P+TW+ELA DP D+ + T+P R D +DD I L Sbjct 236 ASAYSVRARPDALVSAPVTWDELASCDPRDFDIRTMPRRFAERGDVHRAIDDEEFDIGVL 295 Query 301 LDLAAADEERGLGDMPYPPNYPKMPGEPKRVQPSRDTD 338 L+ AAD G GD+PYPP +PKMPGEPKRVQPSR D Sbjct 296 LEWFAAD---GRGDLPYPPTHPKMPGEPKRVQPSRARD 330 >gi|239992054|ref|ZP_04712718.1| hypothetical protein SrosN1_32454 [Streptomyces roseosporus NRRL 11379] Length=336 Score = 380 bits (975), Expect = 2e-103, Method: Compositional matrix adjust. Identities = 202/331 (62%), Positives = 245/331 (75%), Gaps = 7/331 (2%) Query 7 ELDVDGIAVRLTSPDRMYFPKLGSHGTKRRLVEYYFAVAGGPMLT-ALRDRPTHLQRFPD 65 ELD G AVRL++PD++YFP+ G TKR + EY+ AV GP +T AL RPT LQRF D Sbjct 2 ELDAGGRAVRLSNPDKVYFPEKGY--TKRDVAEYFLAV--GPGITRALNHRPTTLQRFVD 57 Query 66 GVDGEQIYQKRIPRHRPDYLQTCRVTFPSGRMADALKVTHPAAIVWAAQMGTITLHPWQV 125 GV+G+ YQKR P++ P+++ T R+ FPSGR AD + T AA++WAA +GT+T HPW V Sbjct 58 GVEGDFFYQKRAPKNLPEWIPTARIAFPSGRPADEICPTELAAVIWAANLGTLTFHPWPV 117 Query 126 RCPDTEHPDELRIDLDPQPGTGFVEARTVAVDVLRSVLDDLGLVGYPKTSGGRGIHVFLR 185 R DT+HPDELRIDLDPQPGT + +A T A + LRSVL+D G+ G+PKTSGGRG+HVF+ Sbjct 118 RAGDTDHPDELRIDLDPQPGTDYADAVTAAHE-LRSVLEDHGVRGWPKTSGGRGMHVFVP 176 Query 186 IATDWDFVEVRRAGIALAREVERRAPDAVTTSWWKEERGARIFIDFNQNARDRTMASAYS 245 I W FVEVRRA IA RE+ERR P+ VTT+WWKEERG RIF+DFNQ ARDRT+ASAYS Sbjct 177 IEPAWSFVEVRRAAIAAGRELERRMPERVTTAWWKEERGERIFVDFNQTARDRTIASAYS 236 Query 246 VRPTPIATVSMPLTWEELAGADPDDYTMTTVPELVKIRDDPWAGMDDVAQSIAPLLDLAA 305 VRP P A VS PL W+E+ A+P D+ + T+P D A MD A + LL+LA Sbjct 237 VRPFPHAPVSAPLRWDEIDDAEPRDFDIRTLPVRYAELGDVHADMDQEAFRLDGLLELAD 296 Query 306 ADE-ERGLGDMPYPPNYPKMPGEPKRVQPSR 335 DE ERGLGDMPYPP YPKMPGEPKRVQPSR Sbjct 297 RDEKERGLGDMPYPPEYPKMPGEPKRVQPSR 327 Lambda K H 0.319 0.137 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 636071322808 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40