BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3731
Length=358
Score E
Sequences producing significant alignments: (Bits) Value
gi|308232550|ref|ZP_07416427.2| ATP-dependent DNA ligase ligC [M... 738 0.0
gi|308369215|ref|ZP_07666688.1| ATP-dependent DNA ligase ligC [M... 735 0.0
gi|15610867|ref|NP_218248.1| ATP-dependent DNA ligase [Mycobacte... 734 0.0
gi|15843352|ref|NP_338389.1| ATP-dependent DNA ligase [Mycobacte... 731 0.0
gi|41406439|ref|NP_959275.1| ATP-dependent DNA ligase [Mycobacte... 640 0.0
gi|254818488|ref|ZP_05223489.1| ATP-dependent DNA ligase [Mycoba... 640 0.0
gi|118463802|ref|YP_879648.1| ATP-dependent DNA ligase [Mycobact... 634 6e-180
gi|296166843|ref|ZP_06849260.1| ATP-dependent DNA ligase [Mycoba... 634 7e-180
gi|336459741|gb|EGO38661.1| ATP-dependent DNA ligase [Mycobacter... 634 7e-180
gi|240171065|ref|ZP_04749724.1| ATP-dependent DNA ligase [Mycoba... 633 1e-179
gi|254773367|ref|ZP_05214883.1| ATP-dependent DNA ligase [Mycoba... 630 8e-179
gi|342859960|ref|ZP_08716612.1| ATP-dependent DNA ligase [Mycoba... 629 2e-178
gi|183985234|ref|YP_001853525.1| ATP-dependent DNA ligase LigC [... 627 1e-177
gi|118619483|ref|YP_907815.1| ATP-dependent DNA ligase [Mycobact... 614 7e-174
gi|169627384|ref|YP_001701033.1| ATP-dependent DNA ligase [Mycob... 577 1e-162
gi|120406492|ref|YP_956321.1| ATP-dependent DNA ligase [Mycobact... 561 8e-158
gi|126437883|ref|YP_001073574.1| ATP-dependent DNA ligase [Mycob... 555 6e-156
gi|108801902|ref|YP_642099.1| ATP-dependent DNA ligase [Mycobact... 555 6e-156
gi|145221846|ref|YP_001132524.1| ATP-dependent DNA ligase [Mycob... 551 5e-155
gi|258651070|ref|YP_003200226.1| ATP-dependent DNA ligase [Nakam... 544 9e-153
gi|118472839|ref|YP_890521.1| ATP-dependent DNA ligase [Mycobact... 534 8e-150
gi|315446417|ref|YP_004079296.1| ATP-dependent DNA ligase [Mycob... 531 5e-149
gi|336117096|ref|YP_004571863.1| ATP-dependent DNA ligase LigC [... 526 2e-147
gi|126437855|ref|YP_001073546.1| ATP-dependent DNA ligase [Mycob... 523 3e-146
gi|220914592|ref|YP_002489901.1| ATP-dependent DNA ligase [Arthr... 506 2e-141
gi|331698479|ref|YP_004334718.1| ATP dependent DNA ligase [Pseud... 498 7e-139
gi|325001866|ref|ZP_08122978.1| ATP-dependent DNA ligase [Pseudo... 496 2e-138
gi|325965207|ref|YP_004243113.1| ATP-dependent DNA ligase [Arthr... 494 8e-138
gi|116672625|ref|YP_833558.1| ATP-dependent DNA ligase [Arthroba... 489 3e-136
gi|84496262|ref|ZP_00995116.1| DNA ligase [Janibacter sp. HTCC26... 480 2e-133
gi|284031238|ref|YP_003381169.1| ATP dependent DNA ligase [Kribb... 471 5e-131
gi|317126616|ref|YP_004100728.1| ATP dependent DNA ligase [Intra... 469 4e-130
gi|332671092|ref|YP_004454100.1| ATP dependent DNA ligase [Cellu... 469 4e-130
gi|312196148|ref|YP_004016209.1| ATP dependent DNA ligase [Frank... 457 1e-126
gi|119960689|ref|YP_949544.1| ATP-dependent DNA ligase [Arthroba... 437 2e-120
gi|296129101|ref|YP_003636351.1| ATP dependent DNA ligase [Cellu... 431 7e-119
gi|284990460|ref|YP_003409014.1| ATP dependent DNA ligase [Geode... 428 7e-118
gi|302555476|ref|ZP_07307818.1| DNA polymerase LigD, ligase doma... 426 3e-117
gi|111221544|ref|YP_712338.1| ATP-dependent DNA ligase [Frankia ... 425 6e-117
gi|336321405|ref|YP_004601373.1| ATP dependent DNA ligase [Cellv... 423 2e-116
gi|288917128|ref|ZP_06411498.1| ATP dependent DNA ligase [Franki... 423 2e-116
gi|291455296|ref|ZP_06594686.1| ATP-dependent DNA ligase [Strept... 420 2e-115
gi|297190639|ref|ZP_06908037.1| ATP-dependent DNA ligase [Strept... 418 7e-115
gi|29828239|ref|NP_822873.1| ATP-dependent DNA ligase [Streptomy... 417 2e-114
gi|302557157|ref|ZP_07309499.1| DNA ligase [Streptomyces griseof... 415 6e-114
gi|337769488|emb|CCB78201.1| ATP-dependent DNA ligase [Streptomy... 414 2e-113
gi|271967966|ref|YP_003342162.1| ATP-dependent DNA ligase [Strep... 413 2e-113
gi|302540328|ref|ZP_07292670.1| putative DNA ligase [Streptomyce... 412 4e-113
gi|158316925|ref|YP_001509433.1| ATP-dependent DNA ligase [Frank... 411 7e-113
gi|239992053|ref|ZP_04712717.1| ATP-dependent DNA ligase [Strept... 411 1e-112
>gi|308232550|ref|ZP_07416427.2| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu001]
gi|308379603|ref|ZP_07486868.2| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu010]
gi|308380790|ref|ZP_07491085.2| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu011]
gi|308213616|gb|EFO73015.1| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu001]
gi|308356479|gb|EFP45330.1| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu010]
gi|308360425|gb|EFP49276.1| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu011]
Length=403
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/358 (100%), Positives = 358/358 (100%), Gaps = 0/358 (0%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE
Sbjct 46 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 105
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL
Sbjct 106 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 165
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG
Sbjct 166 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 225
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV
Sbjct 226 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 285
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP
Sbjct 286 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 345
Query 301 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR 358
LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR
Sbjct 346 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR 403
>gi|308369215|ref|ZP_07666688.1| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu002]
gi|308371438|ref|ZP_07667163.1| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu003]
gi|308372640|ref|ZP_07429333.2| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu004]
9 more sequence titles
Length=403
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/358 (99%), Positives = 357/358 (99%), Gaps = 0/358 (0%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE
Sbjct 46 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 105
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL
Sbjct 106 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 165
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG
Sbjct 166 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 225
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV
Sbjct 226 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 285
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP
Sbjct 286 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 345
Query 301 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR 358
LRPERVVEVRYD MEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR
Sbjct 346 LRPERVVEVRYDHMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR 403
>gi|15610867|ref|NP_218248.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis H37Rv]
gi|148663597|ref|YP_001285120.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis H37Ra]
gi|167970888|ref|ZP_02553165.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis H37Ra]
gi|307086528|ref|ZP_07495641.1| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu012]
gi|2960155|emb|CAA18053.1| POSSIBLE ATP-DEPENDENT DNA LIGASE LIGC (POLYDEOXYRIBONUCLEOTIDE
SYNTHASE [ATP]) (POLYNUCLEOTIDE LIGASE [ATP]) (SEALASE) (DNA
REPAIR PROTEIN) (DNA JOINASE) [Mycobacterium tuberculosis
H37Rv]
gi|148507749|gb|ABQ75558.1| ATP-dependent DNA ligase LigC [Mycobacterium tuberculosis H37Ra]
gi|308364012|gb|EFP52863.1| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu012]
Length=358
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/358 (100%), Positives = 358/358 (100%), Gaps = 0/358 (0%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE
Sbjct 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL
Sbjct 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG
Sbjct 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV
Sbjct 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP
Sbjct 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
Query 301 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR 358
LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR
Sbjct 301 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR 358
>gi|15843352|ref|NP_338389.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis CDC1551]
gi|31794903|ref|NP_857396.1| ATP-dependent DNA ligase [Mycobacterium bovis AF2122/97]
gi|121639647|ref|YP_979871.1| ATP-dependent DNA ligase [Mycobacterium bovis BCG str. Pasteur
1173P2]
55 more sequence titles
Length=358
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/358 (99%), Positives = 357/358 (99%), Gaps = 0/358 (0%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE
Sbjct 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL
Sbjct 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG
Sbjct 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV
Sbjct 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP
Sbjct 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
Query 301 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR 358
LRPERVVEVRYD MEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR
Sbjct 301 LRPERVVEVRYDHMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR 358
>gi|41406439|ref|NP_959275.1| ATP-dependent DNA ligase [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41394788|gb|AAS02658.1| LigC [Mycobacterium avium subsp. paratuberculosis K-10]
Length=369
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/357 (88%), Positives = 329/357 (93%), Gaps = 4/357 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPVSPMLAKSV AIPP ASYEPKWDGFRSICFRDGD+VELGSRNERPMTRYFPE
Sbjct 1 MDLPVMPPVSPMLAKSVGAIPPAASYEPKWDGFRSICFRDGDEVELGSRNERPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAA+RAELP RCVIDGEI+IATDHGLDFEALQQR+HPAESRVRMLA+ TPASFIAFDLL
Sbjct 61 LVAAVRAELPQRCVIDGEIVIATDHGLDFEALQQRVHPAESRVRMLAEATPASFIAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGD+DYTGRPF ERRAAL++AV G G SIHVTPATTD+ TA+RWF EFEGAGLDG
Sbjct 121 ALGDEDYTGRPFRERRAALLEAVGGPGP----SIHVTPATTDLDTARRWFDEFEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
V+AKP ITYQPDKRVMFKIKH RTADCVVAGYRVHKSG+DAIGSLLLGLYQ+DGQLASV
Sbjct 177 VVAKPLDITYQPDKRVMFKIKHERTADCVVAGYRVHKSGADAIGSLLLGLYQDDGQLASV 236
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
GVIGAFPMAERRRL TELQPLVT F+DHPWNWAAH AG+RTPRKNEFSRWN GKDLSFVP
Sbjct 237 GVIGAFPMAERRRLFTELQPLVTDFEDHPWNWAAHQAGERTPRKNEFSRWNAGKDLSFVP 296
Query 301 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL 357
LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+Y QLE+P+T L DIVPGL
Sbjct 297 LRPERVVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYEQLEQPVTFRLDDIVPGL 353
>gi|254818488|ref|ZP_05223489.1| ATP-dependent DNA ligase [Mycobacterium intracellulare ATCC 13950]
Length=356
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/357 (88%), Positives = 327/357 (92%), Gaps = 4/357 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPVSPMLAKSV AIPP ASYEPKWDGFRSICFRDGD VELGSRNERPMTRYFPE
Sbjct 1 MDLPVMPPVSPMLAKSVRAIPPHASYEPKWDGFRSICFRDGDDVELGSRNERPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAA+RAELP RCVIDGEI+IATDHGLDFEALQQRIHPA+SRVRMLA+ TPASFIAFDLL
Sbjct 61 LVAAVRAELPERCVIDGEIVIATDHGLDFEALQQRIHPADSRVRMLAEATPASFIAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALG DDYT RPFSERRAALVDAV GSG SIHVTPATTD+ TAQRWF EFEGAGLDG
Sbjct 121 ALGGDDYTRRPFSERRAALVDAVGGSGR----SIHVTPATTDLGTAQRWFDEFEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKP +TYQPDKRVMFKIKH RTADCVVAGYRVHKSG+DAIGSLLLGLYQ+DGQLASV
Sbjct 177 VIAKPLDVTYQPDKRVMFKIKHERTADCVVAGYRVHKSGADAIGSLLLGLYQDDGQLASV 236
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
GVIGAFPMAERRRL ELQPLVT F DHPWNWAAH AG+RTPRKNE+SRWN GKDLSFVP
Sbjct 237 GVIGAFPMAERRRLFAELQPLVTDFADHPWNWAAHEAGERTPRKNEYSRWNAGKDLSFVP 296
Query 301 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL 357
LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+Y QLE+P+T SL +IVPGL
Sbjct 297 LRPERVVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYEQLEQPVTFSLGEIVPGL 353
>gi|118463802|ref|YP_879648.1| ATP-dependent DNA ligase [Mycobacterium avium 104]
gi|118165089|gb|ABK65986.1| DNA ligase [Mycobacterium avium 104]
Length=364
Score = 634 bits (1636), Expect = 6e-180, Method: Compositional matrix adjust.
Identities = 308/352 (88%), Positives = 325/352 (93%), Gaps = 4/352 (1%)
Query 6 MPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPELVAAI 65
MPPVSPMLAKSV AIPP ASYEPKWDGFRSICFRDGD+VELGSRNERPMTRYFPELVAA+
Sbjct 1 MPPVSPMLAKSVGAIPPAASYEPKWDGFRSICFRDGDEVELGSRNERPMTRYFPELVAAV 60
Query 66 RAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLLALGDD 125
RAELP RCVIDGEI+IATDHGLDFEALQQRIHPAESRVRMLA+ TPASFIAFDLLALGD+
Sbjct 61 RAELPQRCVIDGEIVIATDHGLDFEALQQRIHPAESRVRMLAEATPASFIAFDLLALGDE 120
Query 126 DYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDGVIAKP 185
DYTGRPF ERRAAL++AV G G SIHVTPATTD+ TA+RWF EFEGAGLDGV+AKP
Sbjct 121 DYTGRPFRERRAALLEAVGGPGP----SIHVTPATTDLDTARRWFDEFEGAGLDGVVAKP 176
Query 186 PHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASVGVIGA 245
ITYQPDKRVMFKIKH RTADCVVAGYRVHKSG+DAIGSLLLGLYQ+DGQLASVGVIGA
Sbjct 177 LDITYQPDKRVMFKIKHERTADCVVAGYRVHKSGADAIGSLLLGLYQDDGQLASVGVIGA 236
Query 246 FPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVPLRPER 305
FPMAERRRL TELQPLVT F+DHPWNWAAH AG+RTPRKNEFSRWN GKDLSFVPLRPER
Sbjct 237 FPMAERRRLFTELQPLVTDFEDHPWNWAAHQAGERTPRKNEFSRWNAGKDLSFVPLRPER 296
Query 306 VVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL 357
VVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+Y QLE+P+T L DIVPGL
Sbjct 297 VVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYEQLEQPVTFRLGDIVPGL 348
>gi|296166843|ref|ZP_06849260.1| ATP-dependent DNA ligase [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897720|gb|EFG77309.1| ATP-dependent DNA ligase [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=356
Score = 634 bits (1635), Expect = 7e-180, Method: Compositional matrix adjust.
Identities = 307/357 (86%), Positives = 326/357 (92%), Gaps = 4/357 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPVSPMLAKSV +IPPDASYEPKWDGFRSICFRD D+VELGSRNERPMTRYFPE
Sbjct 1 MDLPVMPPVSPMLAKSVRSIPPDASYEPKWDGFRSICFRDRDEVELGSRNERPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAA+RAELP RCVIDGEI+IATDHGLDFEALQQRIHPA+SRVRMLA+ TPA+FIAFDLL
Sbjct 61 LVAAVRAELPERCVIDGEIVIATDHGLDFEALQQRIHPADSRVRMLAEATPAAFIAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGDDDYT RPFSERRAALVDA++ SG S+HVTPATTD+ A+RWF EFEGAGLDG
Sbjct 121 ALGDDDYTRRPFSERRAALVDALSDSGP----SVHVTPATTDVDVARRWFDEFEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKP +TYQPDKR MFKIKH RTADCVVAGYRVHKSG DAIGSLLLGLYQ+DGQLASV
Sbjct 177 VIAKPLTVTYQPDKRAMFKIKHERTADCVVAGYRVHKSGGDAIGSLLLGLYQDDGQLASV 236
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
GVIGAFPMAERRRL E+QPLVT FDDHPWNWAAH G+RTPRKNEFSRWN GKDLSFVP
Sbjct 237 GVIGAFPMAERRRLFAEMQPLVTDFDDHPWNWAAHETGERTPRKNEFSRWNAGKDLSFVP 296
Query 301 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL 357
LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+Y QLE+P+T SL DIVPGL
Sbjct 297 LRPERVVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYEQLEQPVTFSLGDIVPGL 353
>gi|336459741|gb|EGO38661.1| ATP-dependent DNA ligase [Mycobacterium avium subsp. paratuberculosis
S397]
Length=364
Score = 634 bits (1635), Expect = 7e-180, Method: Compositional matrix adjust.
Identities = 308/352 (88%), Positives = 325/352 (93%), Gaps = 4/352 (1%)
Query 6 MPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPELVAAI 65
MPPVSPMLAKSV AIPP ASYEPKWDGFRSICFRDGD+VELGSRNERPMTRYFPELVAA+
Sbjct 1 MPPVSPMLAKSVGAIPPAASYEPKWDGFRSICFRDGDEVELGSRNERPMTRYFPELVAAV 60
Query 66 RAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLLALGDD 125
RAELP RCVIDGEI+IATDHGLDFEALQQRIHPAESRVRMLA+ TPASFIAFDLLALGD+
Sbjct 61 RAELPQRCVIDGEIVIATDHGLDFEALQQRIHPAESRVRMLAEATPASFIAFDLLALGDE 120
Query 126 DYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDGVIAKP 185
DYTGRPF ERRAAL++AV G G SIHVTPATTD+ TA+RWF EFEGAGLDGV+AKP
Sbjct 121 DYTGRPFRERRAALLEAVGGPGP----SIHVTPATTDLDTARRWFDEFEGAGLDGVVAKP 176
Query 186 PHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASVGVIGA 245
ITYQPDKRVMFKIKH RTADCVVAGYRVHKSG+DAIGSLLLGLYQ+DGQLASVGVIGA
Sbjct 177 LDITYQPDKRVMFKIKHERTADCVVAGYRVHKSGADAIGSLLLGLYQDDGQLASVGVIGA 236
Query 246 FPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVPLRPER 305
FPMAERRRL TELQPLVT F+DHPWNWAAH AG+RTPRKNEFSRWN GKDLSFVPLRPER
Sbjct 237 FPMAERRRLFTELQPLVTDFEDHPWNWAAHQAGERTPRKNEFSRWNAGKDLSFVPLRPER 296
Query 306 VVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL 357
VVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+Y QLE+P+T L DIVPGL
Sbjct 297 VVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYEQLEQPVTFRLDDIVPGL 348
>gi|240171065|ref|ZP_04749724.1| ATP-dependent DNA ligase [Mycobacterium kansasii ATCC 12478]
Length=371
Score = 633 bits (1633), Expect = 1e-179, Method: Compositional matrix adjust.
Identities = 311/364 (86%), Positives = 330/364 (91%), Gaps = 7/364 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPVSPMLAKSV IP DASYEPKWDGFRSICFRDGD+VELGSRNERPMTRYFPE
Sbjct 1 MDLPVMPPVSPMLAKSVKTIPADASYEPKWDGFRSICFRDGDEVELGSRNERPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAAI+AELP RCV+DGEI+IATDHGLDFEALQQRIHPA+SRVRMLA+ TPASFIAFDLL
Sbjct 61 LVAAIKAELPARCVVDGEIVIATDHGLDFEALQQRIHPADSRVRMLAEHTPASFIAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADL----SIHVTPATTDMATAQRWFSEFEGA 176
ALGDDDYT RPFSERRAALVDA+T SGA + SIHVTPATTD+ATAQRWF EFEGA
Sbjct 121 ALGDDDYTTRPFSERRAALVDALTVSGAVSGAASGPSIHVTPATTDLATAQRWFDEFEGA 180
Query 177 GLDGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGS---DAIGSLLLGLYQE 233
GLDGVIAKP ITYQPDKRVMFKIKH RTADCVVAGYRVHKS A+GSLLLGLYQ+
Sbjct 181 GLDGVIAKPLTITYQPDKRVMFKIKHERTADCVVAGYRVHKSSGPEDGAVGSLLLGLYQQ 240
Query 234 DGQLASVGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVG 293
DGQLASVGVIGAFPMA+RRRL ELQPLVT+FD+HPWNWAAH AG+RTPRKNEFSRWN G
Sbjct 241 DGQLASVGVIGAFPMAQRRRLFDELQPLVTTFDNHPWNWAAHEAGERTPRKNEFSRWNAG 300
Query 294 KDLSFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDI 353
KDLSFVPLRPERVVEVRYD MEGARFRHTAQFNRWRPDRDPRSC+YAQLE+P++ L DI
Sbjct 301 KDLSFVPLRPERVVEVRYDHMEGARFRHTAQFNRWRPDRDPRSCTYAQLEQPVSFHLDDI 360
Query 354 VPGL 357
V GL
Sbjct 361 VAGL 364
>gi|254773367|ref|ZP_05214883.1| ATP-dependent DNA ligase [Mycobacterium avium subsp. avium ATCC
25291]
Length=364
Score = 630 bits (1626), Expect = 8e-179, Method: Compositional matrix adjust.
Identities = 307/352 (88%), Positives = 324/352 (93%), Gaps = 4/352 (1%)
Query 6 MPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPELVAAI 65
MPPVSPMLAKSV AIPP ASYEPKWDGFRSICFRDGD+VELGSRNERPMTRYFPELVAA+
Sbjct 1 MPPVSPMLAKSVGAIPPAASYEPKWDGFRSICFRDGDEVELGSRNERPMTRYFPELVAAV 60
Query 66 RAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLLALGDD 125
RAELP RCVIDGEI+IATDHGLDFEALQQRIHPAESRVRMLA+ TPASFIAFDLLALGD+
Sbjct 61 RAELPQRCVIDGEIVIATDHGLDFEALQQRIHPAESRVRMLAEATPASFIAFDLLALGDE 120
Query 126 DYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDGVIAKP 185
DYTGRPF ERRAAL++AV G G SIHVTPATTD+ TA+RWF EFEGAGLDGV+AKP
Sbjct 121 DYTGRPFRERRAALLEAVGGPGP----SIHVTPATTDLDTARRWFDEFEGAGLDGVVAKP 176
Query 186 PHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASVGVIGA 245
ITYQPDKRVMFKIK RTADCVVAGYRVHKSG+DAIGSLLLGLYQ+DGQLASVGVIGA
Sbjct 177 LDITYQPDKRVMFKIKDERTADCVVAGYRVHKSGADAIGSLLLGLYQDDGQLASVGVIGA 236
Query 246 FPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVPLRPER 305
FPMAERRRL TELQPLVT F+DHPWNWAAH AG+RTPRKNEFSRWN GKDLSFVPLRPER
Sbjct 237 FPMAERRRLFTELQPLVTDFEDHPWNWAAHQAGERTPRKNEFSRWNAGKDLSFVPLRPER 296
Query 306 VVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL 357
VVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+Y QLE+P+T L DIVPGL
Sbjct 297 VVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYEQLEQPVTFRLDDIVPGL 348
>gi|342859960|ref|ZP_08716612.1| ATP-dependent DNA ligase [Mycobacterium colombiense CECT 3035]
gi|342132338|gb|EGT85567.1| ATP-dependent DNA ligase [Mycobacterium colombiense CECT 3035]
Length=356
Score = 629 bits (1623), Expect = 2e-178, Method: Compositional matrix adjust.
Identities = 306/357 (86%), Positives = 324/357 (91%), Gaps = 4/357 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPVSPMLAKSV +IPPDASYEPKWDGFRSICFRD D+VELGSRNERPMTRYFPE
Sbjct 1 MDLPVMPPVSPMLAKSVRSIPPDASYEPKWDGFRSICFRDRDEVELGSRNERPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAA+RAELP RCVIDGEI+IATDHGLDFEALQQRIHPA+SRVRMLA+ TPASFIAFDLL
Sbjct 61 LVAAVRAELPARCVIDGEIVIATDHGLDFEALQQRIHPADSRVRMLAETTPASFIAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGDDDYT RPF ERRA LV+A+ GSG SIHVTPATTD+ TA WF EFEGAGLDG
Sbjct 121 ALGDDDYTRRPFRERRATLVEALAGSGP----SIHVTPATTDLGTAHSWFGEFEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKP ITYQPDKR+MFKIKH RTADCVVAGYRVHKSG+ AIGSLLLGLYQ+DGQLASV
Sbjct 177 VIAKPLDITYQPDKRIMFKIKHERTADCVVAGYRVHKSGAGAIGSLLLGLYQDDGQLASV 236
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
GVIGAFPMAERRRL ELQPLVT F+ HPWNWAAH AG+RTPRKNEFSRWN GKDLSFVP
Sbjct 237 GVIGAFPMAERRRLFDELQPLVTDFEHHPWNWAAHEAGERTPRKNEFSRWNAGKDLSFVP 296
Query 301 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL 357
LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+Y QLE+P+T SL +IVPGL
Sbjct 297 LRPERVVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYEQLEQPVTFSLGEIVPGL 353
>gi|183985234|ref|YP_001853525.1| ATP-dependent DNA ligase LigC [Mycobacterium marinum M]
gi|183178560|gb|ACC43670.1| ATP-dependent DNA ligase LigC [Mycobacterium marinum M]
Length=358
Score = 627 bits (1616), Expect = 1e-177, Method: Compositional matrix adjust.
Identities = 306/357 (86%), Positives = 325/357 (92%), Gaps = 5/357 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPP+SPMLAK+V IP DASYEPKWDGFRSICFRD D+VELGSRNERP+TRYFPE
Sbjct 1 MDLPVMPPISPMLAKAVKTIPADASYEPKWDGFRSICFRDNDEVELGSRNERPLTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAA+RAELP RCV+DGEI+IAT HGLDFEALQQRIHPA+SRVRMLA+ TPASFIAFDLL
Sbjct 61 LVAAVRAELPRRCVLDGEIVIATGHGLDFEALQQRIHPADSRVRMLAEHTPASFIAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGDDDYT RPF ERRAALV+AV GSG SIHVTPATTD ATA+RWF EFEGAGLDG
Sbjct 121 ALGDDDYTTRPFVERRAALVEAV-GSGP----SIHVTPATTDQATARRWFEEFEGAGLDG 175
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKP +TYQPDKRVMFKIKH RTADCV+AGYR+HKSG D IGSLLLGLYQ+DGQLASV
Sbjct 176 VIAKPLAVTYQPDKRVMFKIKHERTADCVLAGYRLHKSGGDVIGSLLLGLYQDDGQLASV 235
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
GVIGAFPMAERRRL TELQ LVTSFDDHPWNWAAH +G+RTPRKNEFSRWN GKDLSFVP
Sbjct 236 GVIGAFPMAERRRLFTELQELVTSFDDHPWNWAAHQSGERTPRKNEFSRWNAGKDLSFVP 295
Query 301 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL 357
LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+YAQLE+PLT SL DIV GL
Sbjct 296 LRPERVVEVRYDHMEGPRFRHTAQFNRWRPDRDPRSCTYAQLEQPLTFSLDDIVAGL 352
>gi|118619483|ref|YP_907815.1| ATP-dependent DNA ligase [Mycobacterium ulcerans Agy99]
gi|118571593|gb|ABL06344.1| ATP-dependent DNA ligase LigC [Mycobacterium ulcerans Agy99]
Length=358
Score = 614 bits (1583), Expect = 7e-174, Method: Compositional matrix adjust.
Identities = 300/357 (85%), Positives = 321/357 (90%), Gaps = 5/357 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPP+SPMLAK+V IP DASYEPKWDGFRSICFRD D+VELGSRNERP+TRYFPE
Sbjct 1 MDLPVMPPISPMLAKAVKTIPADASYEPKWDGFRSICFRDNDEVELGSRNERPLTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAA+RAELP RCV+DGEI+IAT HGLDFEALQQRIH A+SRVRMLA+ PASFIAFDLL
Sbjct 61 LVAAVRAELPRRCVLDGEIVIATGHGLDFEALQQRIHHADSRVRMLAEHIPASFIAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGDDDYT RPF ERRAALV+AV GSG SIHVTPATTD ATA+RWF EFEGAGLDG
Sbjct 121 ALGDDDYTTRPFVERRAALVEAV-GSGP----SIHVTPATTDQATARRWFEEFEGAGLDG 175
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKP +TYQPDK VMFK+KH RTADCV+AGYR+HKSG D IGSLLLGLYQ+DGQLASV
Sbjct 176 VIAKPLAVTYQPDKCVMFKLKHERTADCVLAGYRLHKSGGDVIGSLLLGLYQDDGQLASV 235
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
GVIGAFPMAERRRL TELQ LVTSFDDHPWNWAAH +G+RTPRKNEFSRWN GKDLSFVP
Sbjct 236 GVIGAFPMAERRRLFTELQELVTSFDDHPWNWAAHQSGERTPRKNEFSRWNAGKDLSFVP 295
Query 301 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL 357
LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+YAQLE+PL +L DIV GL
Sbjct 296 LRPERVVEVRYDHMEGPRFRHTAQFNRWRPDRDPRSCTYAQLEQPLMFNLDDIVAGL 352
>gi|169627384|ref|YP_001701033.1| ATP-dependent DNA ligase [Mycobacterium abscessus ATCC 19977]
gi|169239351|emb|CAM60379.1| Probable DNA ligase LigC [Mycobacterium abscessus]
Length=343
Score = 577 bits (1486), Expect = 1e-162, Method: Compositional matrix adjust.
Identities = 277/346 (81%), Positives = 306/346 (89%), Gaps = 4/346 (1%)
Query 12 MLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPELVAAIRAELPH 71
MLAK V IP ASYEPKWDGFRSI FRDGD+VELGSRNE+P+TRYFPELVAA+ AELP
Sbjct 1 MLAKPVAKIPDGASYEPKWDGFRSIVFRDGDEVELGSRNEKPLTRYFPELVAAVLAELPP 60
Query 72 RCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLLALGDDDYTGRP 131
RCV+DGEI+IAT+ GLDFEALQQRIHPA+SRVR+LA++TP+SFIAFDLLALGD+DYTGRP
Sbjct 61 RCVVDGEIVIATEAGLDFEALQQRIHPADSRVRLLAEQTPSSFIAFDLLALGDEDYTGRP 120
Query 132 FSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDGVIAKPPHITYQ 191
FSERRAAL +A++ +G SIH+TPATTD A AQRWF EFEGAG DG+IAKP I YQ
Sbjct 121 FSERRAALTEALSSAGT----SIHLTPATTDQALAQRWFEEFEGAGTDGLIAKPLAIAYQ 176
Query 192 PDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASVGVIGAFPMAER 251
PDKRVMFKIK RTADCVVAGYRVHKSG DAIGSLLLGLYQEDG LASVGVIGAFPMAER
Sbjct 177 PDKRVMFKIKPERTADCVVAGYRVHKSGDDAIGSLLLGLYQEDGILASVGVIGAFPMAER 236
Query 252 RRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVPLRPERVVEVRY 311
+RL ELQPL+ ++HPWNWAAH AG+RTP+KN SRWN GKDLSFVPLRPERVVEVRY
Sbjct 237 KRLFQELQPLIIPLENHPWNWAAHEAGERTPQKNAGSRWNAGKDLSFVPLRPERVVEVRY 296
Query 312 DRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL 357
D MEG RFRHTAQFNRWRPDRDPRSC+Y QLE+P+T SL+DIVPGL
Sbjct 297 DHMEGVRFRHTAQFNRWRPDRDPRSCTYEQLEQPITFSLNDIVPGL 342
>gi|120406492|ref|YP_956321.1| ATP-dependent DNA ligase [Mycobacterium vanbaalenii PYR-1]
gi|119959310|gb|ABM16315.1| ATP dependent DNA ligase [Mycobacterium vanbaalenii PYR-1]
Length=360
Score = 561 bits (1445), Expect = 8e-158, Method: Compositional matrix adjust.
Identities = 278/357 (78%), Positives = 301/357 (85%), Gaps = 4/357 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
MQLPVMPPVSPML+KSV IP ASYEPKWDGFRSI FRDG++VELGSRNERPMTRYFPE
Sbjct 1 MQLPVMPPVSPMLSKSVDTIPDGASYEPKWDGFRSILFRDGNEVELGSRNERPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LV A RAELP RCV+DGEI++AT GLDFEALQ R+HPA SRVRMLA++TPASFIAFDLL
Sbjct 61 LVEAARAELPPRCVVDGEIVVATGGGLDFEALQLRLHPAASRVRMLAEKTPASFIAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
AL D DYT RPF+ERRAALV A+ G G + HVTPAT D+ATA+RWF EFEGAGLDG
Sbjct 121 ALDDTDYTARPFAERRAALVGALAGCGP----TFHVTPATLDVATARRWFDEFEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKP Y PDKRVMFKIKH RTADCVVAGYR+HKSG DA+GSLLLGLY +DG LASV
Sbjct 177 VIAKPLDGHYLPDKRVMFKIKHQRTADCVVAGYRLHKSGPDAVGSLLLGLYDDDGSLASV 236
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
GV+GAFPMA RR L+TELQPLVT+FD HPWNWAA V R SRWN GKDLSFVP
Sbjct 237 GVVGAFPMARRRELVTELQPLVTTFDGHPWNWAAQVDPDTVRRYGGGSRWNAGKDLSFVP 296
Query 301 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL 357
LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDP SC++ QL+RPLT SL DIVPGL
Sbjct 297 LRPERVVEVRYDHMEGQRFRHTAQFNRWRPDRDPLSCTFDQLDRPLTFSLDDIVPGL 353
>gi|126437883|ref|YP_001073574.1| ATP-dependent DNA ligase [Mycobacterium sp. JLS]
gi|126237683|gb|ABO01084.1| ATP dependent DNA ligase [Mycobacterium sp. JLS]
Length=353
Score = 555 bits (1429), Expect = 6e-156, Method: Compositional matrix adjust.
Identities = 275/357 (78%), Positives = 297/357 (84%), Gaps = 5/357 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
MQLPV PP++PML+K+V IP ASYEPKWDGFRSI FRDGD+VELGSRNERPMTRYFPE
Sbjct 1 MQLPVSPPIAPMLSKAVADIPLGASYEPKWDGFRSIVFRDGDEVELGSRNERPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LV A RAELP RCVIDGEI+IAT GLDFEALQ R+HPA SRVRMLA++TPASFIAFDLL
Sbjct 61 LVEAARAELPARCVIDGEIVIATADGLDFEALQLRLHPAASRVRMLAEKTPASFIAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGD DYT RPF ERRA L +TG + HVTPAT D+ TA+RWF EFEGAGLDG
Sbjct 121 ALGDTDYTSRPFVERRAELERVLTGGH-----TFHVTPATVDVDTARRWFHEFEGAGLDG 175
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKP Y PDKRVMFK+KH RTADCVVAGYR+HKSG DAIGSLLLGLY +DG+LASV
Sbjct 176 VIAKPLDGPYLPDKRVMFKVKHQRTADCVVAGYRLHKSGDDAIGSLLLGLYTDDGELASV 235
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
GVIGAFPMA RR L ELQPLVT+FD+HPWNWAAH R SRWN GKDLSFVP
Sbjct 236 GVIGAFPMARRRALFAELQPLVTTFDEHPWNWAAHADPDVVRRYGGGSRWNAGKDLSFVP 295
Query 301 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL 357
LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+YAQLE+P+T L DIVPGL
Sbjct 296 LRPERVVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYAQLEQPVTFRLGDIVPGL 352
>gi|108801902|ref|YP_642099.1| ATP-dependent DNA ligase [Mycobacterium sp. MCS]
gi|119871054|ref|YP_941006.1| ATP-dependent DNA ligase [Mycobacterium sp. KMS]
gi|108772321|gb|ABG11043.1| ATP dependent DNA ligase [Mycobacterium sp. MCS]
gi|119697143|gb|ABL94216.1| ATP dependent DNA ligase [Mycobacterium sp. KMS]
Length=353
Score = 555 bits (1429), Expect = 6e-156, Method: Compositional matrix adjust.
Identities = 275/357 (78%), Positives = 297/357 (84%), Gaps = 5/357 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
MQLPV PP++PML+K+VT IP ASYEPKWDGFRSI FRDGD+VELGSRNERPMTRYFPE
Sbjct 1 MQLPVSPPIAPMLSKAVTDIPLGASYEPKWDGFRSIVFRDGDEVELGSRNERPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LV A RAELP RCVIDGEI+IAT GLDFEALQ R+HPA SRVRMLA++TPASFIAFDLL
Sbjct 61 LVEAARAELPARCVIDGEIVIATADGLDFEALQLRLHPAASRVRMLAEKTPASFIAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGD DYT RPF ERRA L +TG + HVTPAT D+ TA+RWF EFEGAGLDG
Sbjct 121 ALGDTDYTSRPFVERRAELERVLTGGH-----TFHVTPATVDVDTARRWFHEFEGAGLDG 175
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKP Y PDKRVMFK+KH RTADCVVAGYR+HKSG DAIGSLLLGLY +DG+LASV
Sbjct 176 VIAKPLDGPYLPDKRVMFKVKHQRTADCVVAGYRLHKSGDDAIGSLLLGLYTDDGELASV 235
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
GVIGAFPMA RR L ELQPLV +FD+HPWNWAAH R SRWN GKDLSFVP
Sbjct 236 GVIGAFPMARRRALFAELQPLVATFDEHPWNWAAHADPDVVRRYGGGSRWNAGKDLSFVP 295
Query 301 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL 357
LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+YAQLE+P+T L DIVPGL
Sbjct 296 LRPERVVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYAQLEQPVTFRLGDIVPGL 352
>gi|145221846|ref|YP_001132524.1| ATP-dependent DNA ligase [Mycobacterium gilvum PYR-GCK]
gi|145214332|gb|ABP43736.1| ATP dependent DNA ligase [Mycobacterium gilvum PYR-GCK]
Length=366
Score = 551 bits (1420), Expect = 5e-155, Method: Compositional matrix adjust.
Identities = 272/357 (77%), Positives = 297/357 (84%), Gaps = 4/357 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M+LPVMPP+SPML+KSV IP ASYEPKWDGFRSI FRDGD++E GSRNERPMTRYFPE
Sbjct 4 MRLPVMPPLSPMLSKSVQQIPDGASYEPKWDGFRSIVFRDGDEIEFGSRNERPMTRYFPE 63
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAA R+ELP RCV+DGEI+IAT GLDFEALQ R+HPA SRV MLA++TPASFIAFDLL
Sbjct 64 LVAAARSELPPRCVVDGEIVIATAGGLDFEALQLRLHPAASRVTMLAEKTPASFIAFDLL 123
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGD D TGRPF+ERRAALVDA+ G+G + HVTPAT D+A A RWF EFEGAGLDG
Sbjct 124 ALGDTDLTGRPFTERRAALVDALAGAGP----TFHVTPATRDIALATRWFDEFEGAGLDG 179
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKP Y PDKR MFKIKH RTADCVVAGYR+HKSG DA+GSLLLGLY DG LASV
Sbjct 180 VIAKPVDGVYLPDKRTMFKIKHRRTADCVVAGYRLHKSGDDAVGSLLLGLYDSDGALASV 239
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
GVIGAFPMA RR LL ELQPLVT+FD+HPWNWAAH R SRWN GKDLSFVP
Sbjct 240 GVIGAFPMARRRALLAELQPLVTTFDEHPWNWAAHADPDVVRRHGGGSRWNAGKDLSFVP 299
Query 301 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL 357
LRPERVVEVRYD MEG RFRH AQFNRWRPDR PRSC++ QLE+P++ SL DI PGL
Sbjct 300 LRPERVVEVRYDHMEGRRFRHMAQFNRWRPDRTPRSCTFDQLEQPVSFSLDDIGPGL 356
>gi|258651070|ref|YP_003200226.1| ATP-dependent DNA ligase [Nakamurella multipartita DSM 44233]
gi|258554295|gb|ACV77237.1| ATP dependent DNA ligase [Nakamurella multipartita DSM 44233]
Length=354
Score = 544 bits (1401), Expect = 9e-153, Method: Compositional matrix adjust.
Identities = 264/356 (75%), Positives = 299/356 (84%), Gaps = 6/356 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPP-DASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFP 59
MQLPVMPPV+PMLAKSV IP + SYEPKWDGFRSI FRDGD+VE+GSRNE+PMTRYFP
Sbjct 1 MQLPVMPPVAPMLAKSVPDIPTGELSYEPKWDGFRSIVFRDGDEVEIGSRNEKPMTRYFP 60
Query 60 ELVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDL 119
ELV AI+A LP RCVIDGEI++ L+FE LQQRIHPA SRVRMLA++TPASF+ FDL
Sbjct 61 ELVEAIKANLPPRCVIDGEIVVIVGDRLEFEVLQQRIHPAASRVRMLAEQTPASFVGFDL 120
Query 120 LALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLD 179
LALGD DYTGRPF+ERRAAL A+ G+ A +H+TPAT D A A WF +FEGAGLD
Sbjct 121 LALGDTDYTGRPFAERRAALEQAMAGAAA----PVHLTPATRDPALAAEWFEQFEGAGLD 176
Query 180 GVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLAS 239
GV+AKP TYQPDKR MFKIKH RTADCVVAGYRVHKSG D+IGSLLLGLY + G LAS
Sbjct 177 GVVAKPLTGTYQPDKRTMFKIKHQRTADCVVAGYRVHKSGPDSIGSLLLGLYNDAGDLAS 236
Query 240 VGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAA-HVAGQRTPRKNEFSRWNVGKDLSF 298
VGVIGAFP A R++L TELQPLVT+FD+HPWNWA +G RTPR +E+SRWNVGKDLSF
Sbjct 237 VGVIGAFPAARRKQLFTELQPLVTTFDEHPWNWAKPDESGARTPRSSEYSRWNVGKDLSF 296
Query 299 VPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV 354
+PLRPERVVEVRY+ MEG RFRHTAQFNRWRPDRDPRSC+Y QLE P++ L+DI+
Sbjct 297 IPLRPERVVEVRYEHMEGTRFRHTAQFNRWRPDRDPRSCTYEQLEEPVSYDLADIL 352
>gi|118472839|ref|YP_890521.1| ATP-dependent DNA ligase [Mycobacterium smegmatis str. MC2 155]
gi|118174126|gb|ABK75022.1| DNA ligase [Mycobacterium smegmatis str. MC2 155]
Length=354
Score = 534 bits (1376), Expect = 8e-150, Method: Compositional matrix adjust.
Identities = 264/347 (77%), Positives = 289/347 (84%), Gaps = 6/347 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPV+PPVSPML+KSV IPP SYEPKWDGFRSI FRDG +VELGSR ERPMTRYFPE
Sbjct 1 MDLPVLPPVSPMLSKSVNQIPPGMSYEPKWDGFRSILFRDGAEVELGSRKERPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAA ELP RCVIDGEI++ D+ LDFEALQ R+HPA SRV MLA++TPA+FIAFDLL
Sbjct 61 LVAAALTELPDRCVIDGEIVLPADNHLDFEALQLRLHPAASRVAMLAEQTPAAFIAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGDDDYTGRPFSERRAAL A+ ADA + H+TPATTD+ TAQRWF EFEGAGLDG
Sbjct 121 ALGDDDYTGRPFSERRAALETAL----ADAGPTFHLTPATTDLPTAQRWFHEFEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKP +TYQPDKRVMFK+KH RTADCVVAGYR+HKSG+DA+GSLLLGLY +DG LASV
Sbjct 177 VIAKPLDLTYQPDKRVMFKVKHQRTADCVVAGYRLHKSGADAVGSLLLGLYDDDGSLASV 236
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAG--QRTPRKNEFSRWNVGKDLSF 298
GVIGAFPMA RR L TELQ LV FD HPWNWAA A + R SRWN GKDLSF
Sbjct 237 GVIGAFPMATRRALFTELQTLVADFDHHPWNWAAQAAADPELARRYGGGSRWNAGKDLSF 296
Query 299 VPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERP 345
VPLRPER+VEVRYD MEG RFRHTAQFNRWRPDRD RSC++AQL+ P
Sbjct 297 VPLRPERLVEVRYDHMEGRRFRHTAQFNRWRPDRDARSCTFAQLDSP 343
>gi|315446417|ref|YP_004079296.1| ATP-dependent DNA ligase [Mycobacterium sp. Spyr1]
gi|315264720|gb|ADU01462.1| ATP-dependent DNA ligase [Mycobacterium sp. Spyr1]
Length=366
Score = 531 bits (1369), Expect = 5e-149, Method: Compositional matrix adjust.
Identities = 270/357 (76%), Positives = 295/357 (83%), Gaps = 4/357 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M+LPVMPP+SPML+KSV IP ASYEPKWDGFRSI FRDGD++E GSRNERPMTRYFPE
Sbjct 4 MRLPVMPPLSPMLSKSVQQIPDGASYEPKWDGFRSIVFRDGDEIEFGSRNERPMTRYFPE 63
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAA R+ELP RCV+DGEI+IAT LDFEALQ R+HPA SRV MLA++TPASFIAFDLL
Sbjct 64 LVAAARSELPPRCVVDGEIVIATAGRLDFEALQLRLHPAASRVTMLAEKTPASFIAFDLL 123
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGD D TGRPF+ERRAALVDA+ +G + HVTPAT D+A A RWF EFEGAGLDG
Sbjct 124 ALGDTDLTGRPFTERRAALVDALADAGP----TFHVTPATRDIALATRWFDEFEGAGLDG 179
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKP Y PDKR MFKIKH RTADCVVAGYR+HKSG DA+GSLLLGLY DG LASV
Sbjct 180 VIAKPVDGVYLPDKRTMFKIKHRRTADCVVAGYRLHKSGDDAVGSLLLGLYDSDGALASV 239
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
GVIGAFPMA RR LL ELQPLVT+FD+HPWNWAAH R SRWN GKDLSFVP
Sbjct 240 GVIGAFPMARRRALLAELQPLVTTFDEHPWNWAAHADPDVVRRHGGGSRWNAGKDLSFVP 299
Query 301 LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL 357
LRPERVVEVRYD MEG RFRH AQFNRWRPDR PRSC++ QLE+P++ SL DI PGL
Sbjct 300 LRPERVVEVRYDHMEGRRFRHMAQFNRWRPDRTPRSCTFDQLEQPVSFSLDDIGPGL 356
>gi|336117096|ref|YP_004571863.1| ATP-dependent DNA ligase LigC [Microlunatus phosphovorus NM-1]
gi|334684875|dbj|BAK34460.1| ATP-dependent DNA ligase LigC [Microlunatus phosphovorus NM-1]
Length=363
Score = 526 bits (1355), Expect = 2e-147, Method: Compositional matrix adjust.
Identities = 253/355 (72%), Positives = 289/355 (82%), Gaps = 5/355 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPP-DASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFP 59
+ LPVMPPV PMLAKSV IP D SYEPKWDGFRSI FRDGD+VE+GSRNERPMTRYFP
Sbjct 4 VDLPVMPPVKPMLAKSVPTIPTGDLSYEPKWDGFRSIVFRDGDEVEIGSRNERPMTRYFP 63
Query 60 ELVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDL 119
ELV A+RA LP +CV+DGEI++ L+FE LQQRIHPA SR+++L+++TPA+F+AFDL
Sbjct 64 ELVEALRANLPQKCVLDGEIVVVRGDRLEFEVLQQRIHPAASRIKLLSEQTPATFVAFDL 123
Query 120 LALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLD 179
LALGD+DY RPF+ERRAAL A+ A A+ IHVTP T D A AQ WF +FEGAGLD
Sbjct 124 LALGDEDYLQRPFAERRAALEQAL----ASAEAPIHVTPTTRDPAIAQNWFEQFEGAGLD 179
Query 180 GVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLAS 239
GV+AKP TYQPDKR MFKIKH RTADCVVAGYRVHKSG D IGSLLLGLY +DG L S
Sbjct 180 GVVAKPLAGTYQPDKRTMFKIKHQRTADCVVAGYRVHKSGPDTIGSLLLGLYNDDGVLTS 239
Query 240 VGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFV 299
VGVIGAFP A R+ L TELQPLVT+FDDHPW WA G RTP+ + SRWN GKDLSFV
Sbjct 240 VGVIGAFPAARRKELFTELQPLVTTFDDHPWAWAKEEVGTRTPQHSAGSRWNNGKDLSFV 299
Query 300 PLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV 354
PLRP+ VVEVRY+ MEG RFRHTAQFNRWRPDR+PRSC+Y QLE P++ L+DI+
Sbjct 300 PLRPDLVVEVRYEHMEGVRFRHTAQFNRWRPDREPRSCTYEQLEEPVSYDLADIL 354
>gi|126437855|ref|YP_001073546.1| ATP-dependent DNA ligase [Mycobacterium sp. JLS]
gi|126237655|gb|ABO01056.1| ATP dependent DNA ligase [Mycobacterium sp. JLS]
Length=374
Score = 523 bits (1346), Expect = 3e-146, Method: Compositional matrix adjust.
Identities = 259/312 (84%), Positives = 280/312 (90%), Gaps = 4/312 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M+LPVMPPVSPMLAKSV IPPDASYEPKWDGFRSICFRDG++VELGSR+ERP+TRYFPE
Sbjct 1 MKLPVMPPVSPMLAKSVPTIPPDASYEPKWDGFRSICFRDGEEVELGSRHERPLTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAAI ELP RCVIDGEIIIATDHGLDFEALQQRIHPA+SRVRMLA +TPASF+AFDLL
Sbjct 61 LVAAITTELPERCVIDGEIIIATDHGLDFEALQQRIHPADSRVRMLAKQTPASFVAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGDDDYT RPF+ERRAALV A+ SG S+HVTPATTD+ TA RWF EFEGAGLDG
Sbjct 121 ALGDDDYTKRPFAERRAALVAALADSGP----SVHVTPATTDLTTAHRWFEEFEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
V+AKP +TYQPDKRVMFKIKH RTADCVVAGYRVHKS DAIGSLLLGLY +DG LASV
Sbjct 177 VVAKPLTVTYQPDKRVMFKIKHQRTADCVVAGYRVHKSSQDAIGSLLLGLYTDDGTLASV 236
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP 300
GVIGAFPM +RR+L TE+QP +T+ DDHPWNWAAH AG+RTPRKNE SRWN GKDLSFVP
Sbjct 237 GVIGAFPMTKRRQLFTEMQPSITAVDDHPWNWAAHEAGERTPRKNETSRWNAGKDLSFVP 296
Query 301 LRPERVVEVRYD 312
LRPERVVEVRYD
Sbjct 297 LRPERVVEVRYD 308
>gi|220914592|ref|YP_002489901.1| ATP-dependent DNA ligase [Arthrobacter chlorophenolicus A6]
gi|219861470|gb|ACL41812.1| ATP dependent DNA ligase [Arthrobacter chlorophenolicus A6]
Length=357
Score = 506 bits (1303), Expect = 2e-141, Method: Compositional matrix adjust.
Identities = 247/356 (70%), Positives = 283/356 (80%), Gaps = 11/356 (3%)
Query 6 MPPVSPMLAKSVTAIP-----PDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
MPPV PMLAKSV+ I D SYEPKWDGFRSI FRDGD +E+GSRNE+PMTRYFPE
Sbjct 1 MPPVPPMLAKSVSGIDGIPKGSDLSYEPKWDGFRSIIFRDGDDLEIGSRNEKPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHG--LDFEALQQRIHPAESRVRMLADRTPASFIAFD 118
LV A++ LP RCV+DGEII+ G LDF+ LQQRIHPA SRV++L+++TPASF+AFD
Sbjct 61 LVVALKDNLPERCVVDGEIILIGASGDRLDFDTLQQRIHPAASRVKLLSEQTPASFVAFD 120
Query 119 LLALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGL 178
LLALGDDDYTGRPF+ERRAAL A+ S A +H+T ATTD TA +WF +FEGAGL
Sbjct 121 LLALGDDDYTGRPFAERRAALEKALAASEA----PVHLTAATTDKDTAGQWFEQFEGAGL 176
Query 179 DGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLA 238
DG++AK Y+PDKR MFKIKH RTADCVVAGYR+HKSG D IGSLLLGLY++DG LA
Sbjct 177 DGLVAKRLDGPYEPDKRTMFKIKHERTADCVVAGYRLHKSGPDVIGSLLLGLYKDDGGLA 236
Query 239 SVGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSF 298
SVGVIGAFPM R+ L ELQPLVT FD+HPW WA G+RTPR E SRW+ GKDLSF
Sbjct 237 SVGVIGAFPMKRRQELFQELQPLVTDFDNHPWAWAKQEEGERTPRNAEGSRWSAGKDLSF 296
Query 299 VPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV 354
VPLRPE VVEVRYD MEG RFRHTAQFNRWRPDRDP SC+YAQLE P+ L+ ++
Sbjct 297 VPLRPELVVEVRYDHMEGERFRHTAQFNRWRPDRDPESCTYAQLEEPVNFDLASVL 352
>gi|331698479|ref|YP_004334718.1| ATP dependent DNA ligase [Pseudonocardia dioxanivorans CB1190]
gi|326953168|gb|AEA26865.1| ATP dependent DNA ligase [Pseudonocardia dioxanivorans CB1190]
Length=356
Score = 498 bits (1281), Expect = 7e-139, Method: Compositional matrix adjust.
Identities = 258/356 (73%), Positives = 288/356 (81%), Gaps = 6/356 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPV PMLAK V AIP YEPKWDGFRSI FRDGD+VE+GSRNERPMTRYFPE
Sbjct 1 MDLPVMPPVKPMLAKPVAAIPDGRHYEPKWDGFRSIIFRDGDEVEIGSRNERPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIA--TDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFD 118
+V A++A P R VIDGEI++ + LDFEALQQRIHPA+SRVR+LA++TPASF+AFD
Sbjct 61 VVEAVKANFPERAVIDGEIVVVDRERNRLDFEALQQRIHPADSRVRLLAEQTPASFVAFD 120
Query 119 LLALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGL 178
LLALGDDD TG ERRA L + V G DA +H+TPAT D A++WF EFEGAGL
Sbjct 121 LLALGDDDLTGSRLDERRATL-ERVLG---DAKPPVHITPATQDPVLAEQWFREFEGAGL 176
Query 179 DGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLA 238
DG+IAKP +TYQPDKRVM KIKH RT DCVVAGYRVHKSG DAIGSLLLGL+ E G LA
Sbjct 177 DGLIAKPLDLTYQPDKRVMAKIKHERTCDCVVAGYRVHKSGPDAIGSLLLGLFDERGVLA 236
Query 239 SVGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSF 298
SVGV+GAFPMA RR L TELQPLVT F+ HPWNWAAH G+RTPRKNE SRWN GKDLSF
Sbjct 237 SVGVVGAFPMARRRALFTELQPLVTEFEGHPWNWAAHELGERTPRKNEGSRWNAGKDLSF 296
Query 299 VPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV 354
VPLRPERVVEVRYD MEG RFRHTAQF RWR DR P SC+Y QLE+P++ L D++
Sbjct 297 VPLRPERVVEVRYDYMEGLRFRHTAQFVRWRDDRTPESCTYEQLEQPVSFDLGDVL 352
>gi|325001866|ref|ZP_08122978.1| ATP-dependent DNA ligase [Pseudonocardia sp. P1]
Length=356
Score = 496 bits (1277), Expect = 2e-138, Method: Compositional matrix adjust.
Identities = 253/358 (71%), Positives = 286/358 (80%), Gaps = 6/358 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPV PMLAK ++IP YEPKWDGFRSI FRDGD VE+GSRNERPMTRYFPE
Sbjct 1 MDLPVMPPVKPMLAKPASSIPDGRLYEPKWDGFRSIVFRDGDDVEIGSRNERPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIA--TDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFD 118
+V A+RA P R VIDGEI++A ++ LDFEALQQRIHPA SRV +L+ TPASF+AFD
Sbjct 61 VVEAVRANFPDRAVIDGEIVVADPANNRLDFEALQQRIHPAASRVTLLSTETPASFVAFD 120
Query 119 LLALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGL 178
LLALG DD TG PF+ERR L A+ ADA +H+TP T D TA+RWF FEGAGL
Sbjct 121 LLALGADDLTGLPFAERRDLLESAL----ADAAPPVHLTPVTDDTGTARRWFDRFEGAGL 176
Query 179 DGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLA 238
DG+IAK P TYQPDKRVM KIKH RTADCVVAGYRVHKSG DA+GSLLLGL+ E G L
Sbjct 177 DGLIAKDPAGTYQPDKRVMTKIKHERTADCVVAGYRVHKSGPDAVGSLLLGLHDERGVLV 236
Query 239 SVGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSF 298
SVGV+GAFPMA RR L+TELQPLVT FD+HPW WA + G+RTPRK+E SRWN GKDLSF
Sbjct 237 SVGVVGAFPMARRRELMTELQPLVTGFDEHPWAWAKQLEGERTPRKSETSRWNAGKDLSF 296
Query 299 VPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPG 356
VPLRPERVVEVRYD MEGARFRHT QF RWRPDR P SC+Y QL+RP+ L++++ G
Sbjct 297 VPLRPERVVEVRYDYMEGARFRHTTQFVRWRPDRAPESCTYEQLDRPVGFDLAEVLAG 354
>gi|325965207|ref|YP_004243113.1| ATP-dependent DNA ligase [Arthrobacter phenanthrenivorans Sphe3]
gi|323471294|gb|ADX74979.1| ATP-dependent DNA ligase [Arthrobacter phenanthrenivorans Sphe3]
Length=358
Score = 494 bits (1272), Expect = 8e-138, Method: Compositional matrix adjust.
Identities = 243/344 (71%), Positives = 276/344 (81%), Gaps = 7/344 (2%)
Query 14 AKSVTAIPP-DASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPELVAAIRAELPHR 72
AK+V+ IP D SYEPKWDGFRSI FRDGD VE+GSRNE+PMTRYFPELV A++ LP R
Sbjct 14 AKAVSGIPEGDLSYEPKWDGFRSIIFRDGDDVEIGSRNEKPMTRYFPELVEALKENLPPR 73
Query 73 CVIDGEIIIATDHG--LDFEALQQRIHPAESRVRMLADRTPASFIAFDLLALGDDDYTGR 130
CV+DGEI++ G LDF+ALQQRIHPA SRVR+LA++TPASF+AFDLLALGDD Y R
Sbjct 74 CVVDGEIVLIGPSGDRLDFDALQQRIHPAASRVRLLAEQTPASFVAFDLLALGDDSYMDR 133
Query 131 PFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDGVIAKPPHITY 190
PF+ERRAAL A+ S A +H+T ATTD TAQRWF +FEGAGLDGV+AK Y
Sbjct 134 PFTERRAALEKALAASKA----PVHLTAATTDKDTAQRWFEQFEGAGLDGVVAKRLEGRY 189
Query 191 QPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASVGVIGAFPMAE 250
+PDKRVMFK KH RTADCVVAGYR+HKSG DAIGSLLLGLY++DG LASVGVIGAFPM
Sbjct 190 EPDKRVMFKTKHERTADCVVAGYRLHKSGPDAIGSLLLGLYKDDGGLASVGVIGAFPMKR 249
Query 251 RRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVPLRPERVVEVR 310
RR L +LQ LVT FD+HPW WA G+RTPR E SRW+ GKDLSFVPLRPE VVEVR
Sbjct 250 RRELYEQLQQLVTDFDNHPWAWAKQEEGERTPRNAEGSRWSAGKDLSFVPLRPELVVEVR 309
Query 311 YDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV 354
YD MEG RFRHTAQFNRWRPDRDP SC+YAQLE P++ L ++
Sbjct 310 YDHMEGDRFRHTAQFNRWRPDRDPESCTYAQLEEPVSFDLVSVL 353
>gi|116672625|ref|YP_833558.1| ATP-dependent DNA ligase [Arthrobacter sp. FB24]
gi|116612734|gb|ABK05458.1| ATP dependent DNA ligase [Arthrobacter sp. FB24]
Length=363
Score = 489 bits (1259), Expect = 3e-136, Method: Compositional matrix adjust.
Identities = 247/362 (69%), Positives = 285/362 (79%), Gaps = 12/362 (3%)
Query 1 MQLPVMPPVSPMLAKSVTAIP------PDASYEPKWDGFRSICFRDGDQVELGSRNERPM 54
MQLPVMPP++PMLAK+V+A+P P S+EPKWDGFRSI FRDGD+VE+GSRN +PM
Sbjct 4 MQLPVMPPIAPMLAKAVSALPEVPDSGPKWSFEPKWDGFRSIIFRDGDEVEIGSRNGKPM 63
Query 55 TRYFPELVAAIRAELPHRCVIDGEIIIATDHG--LDFEALQQRIHPAESRVRMLADRTPA 112
TRYFPELV A++A LP RCV+DGEII+ G LDFEALQQRIHPA SRVR+LA +TPA
Sbjct 64 TRYFPELVEALKANLPPRCVLDGEIILVGASGDRLDFEALQQRIHPAASRVRLLAAQTPA 123
Query 113 SFIAFDLLALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSE 172
SF+AFDLLAL D+D TGRPFSERR+ L A+ GS A IH+T T D TAQ+WF
Sbjct 124 SFVAFDLLALDDEDLTGRPFSERRSMLEKALAGSAA----PIHLTSTTRDNGTAQQWFHR 179
Query 173 FEGAGLDGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQ 232
FEGAGLDG++AK +YQPDKRVM K+KH RTADCV+AGYRVH SG D IGSLLLGLY
Sbjct 180 FEGAGLDGIVAKALDGSYQPDKRVMLKVKHERTADCVLAGYRVHTSGPDRIGSLLLGLYN 239
Query 233 EDGQLASVGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNV 292
DGQLASVGV+GAFPM R+ L ELQPLVT FD HPW WA G RTPR E SRW+
Sbjct 240 GDGQLASVGVVGAFPMQRRKDLFEELQPLVTGFDGHPWAWAKQEEGSRTPRNAEGSRWSA 299
Query 293 GKDLSFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSD 352
GKDLSF+PLRPERV+EV+YD MEG RFRHTAQF RWRPDRDP SC+Y QLE P+ L++
Sbjct 300 GKDLSFIPLRPERVLEVKYDHMEGERFRHTAQFVRWRPDRDPASCTYEQLEEPVKYDLAE 359
Query 353 IV 354
++
Sbjct 360 VL 361
>gi|84496262|ref|ZP_00995116.1| DNA ligase [Janibacter sp. HTCC2649]
gi|84383030|gb|EAP98911.1| DNA ligase [Janibacter sp. HTCC2649]
Length=713
Score = 480 bits (1235), Expect = 2e-133, Method: Compositional matrix adjust.
Identities = 237/355 (67%), Positives = 272/355 (77%), Gaps = 7/355 (1%)
Query 3 LPVMPPVSPMLAK-SVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPEL 61
+PV+PP++PMLAK S + D SYEPKWDGFRSI +R GDQVE+GSRNE+PMTRYFP++
Sbjct 361 MPVVPPIAPMLAKPSKKLVEGDVSYEPKWDGFRSIIYRSGDQVEIGSRNEKPMTRYFPDV 420
Query 62 VAAIRAELPHRCVIDGEIIIA--TDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDL 119
V A+ A P +CV+DGEII+ + LDFE LQQRIHPA SRV+ LA TPASF+AFDL
Sbjct 421 VEAVLANFPDKCVVDGEIILIRPGEDRLDFELLQQRIHPAASRVKKLAGETPASFVAFDL 480
Query 120 LALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLD 179
L+LG+ D G PF RRA L A A + IH+TPAT D+ AQ WF +FEGAGLD
Sbjct 481 LSLGERDLMGEPFEVRRAELEKAF----ATVESPIHLTPATRDVEQAQGWFQQFEGAGLD 536
Query 180 GVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLAS 239
GV+AKP TY+PDKR M K KH RTADCVVAGYR HK+G D IGSLLLGLY ++G LAS
Sbjct 537 GVMAKPLDGTYEPDKRTMHKFKHERTADCVVAGYRTHKTGDDLIGSLLLGLYDDEGALAS 596
Query 240 VGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFV 299
VGVIGAFPMA R+ L ELQ LVT FDDHPW WA GQRTPRK E SRWN GKDLSF
Sbjct 597 VGVIGAFPMARRKELFEELQELVTDFDDHPWAWAKQEEGQRTPRKGEGSRWNNGKDLSFT 656
Query 300 PLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV 354
PLRPERVVEVRYD MEG RFRHTAQF RWR DRDP SC+YAQLE P++ L+D++
Sbjct 657 PLRPERVVEVRYDHMEGVRFRHTAQFVRWRTDRDPESCTYAQLEEPVSYDLADVL 711
>gi|284031238|ref|YP_003381169.1| ATP dependent DNA ligase [Kribbella flavida DSM 17836]
gi|283810531|gb|ADB32370.1| ATP dependent DNA ligase [Kribbella flavida DSM 17836]
Length=354
Score = 471 bits (1213), Expect = 5e-131, Method: Compositional matrix adjust.
Identities = 240/344 (70%), Positives = 265/344 (78%), Gaps = 7/344 (2%)
Query 14 AKSVTAIPP-DASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPELVAAIRAELPHR 72
AK+V IP + S+EPKWDGFRSI FRDGD+VE+GSRNE+PMTRYFPELV AI+A LP R
Sbjct 14 AKAVKQIPDGEVSFEPKWDGFRSIIFRDGDEVEIGSRNEKPMTRYFPELVEAIKANLPQR 73
Query 73 CVIDGEIIIATDHG--LDFEALQQRIHPAESRVRMLADRTPASFIAFDLLALGDDDYTGR 130
CVIDGEI++ G LDFE LQQRIHPA SRV ML++ TPA F+AFDLLALGD DY R
Sbjct 74 CVIDGEIVVIGASGDRLDFEVLQQRIHPAASRVTMLSETTPARFVAFDLLALGDTDYRER 133
Query 131 PFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDGVIAKPPHITY 190
PF ERRAAL +A+ + A IH+T TTD A A WF +FEGAGLDGVIAKP Y
Sbjct 134 PFVERRAALEEALAPAKA----PIHLTRTTTDKAVATEWFHQFEGAGLDGVIAKPLDGLY 189
Query 191 QPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASVGVIGAFPMAE 250
+PDKR MFKIKH RTADCVVAGYRVHKSG + IGSLLLGL+ DG LASVGVIGAFPMA
Sbjct 190 EPDKRTMFKIKHERTADCVVAGYRVHKSGPNRIGSLLLGLFTSDGVLASVGVIGAFPMAR 249
Query 251 RRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVPLRPERVVEVR 310
R L ELQPLVT FDDHPW WA G RTPR E SRW GKDLSFVPLRPERVVEVR
Sbjct 250 REELFEELQPLVTDFDDHPWAWAKQEEGNRTPRNAEGSRWQAGKDLSFVPLRPERVVEVR 309
Query 311 YDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV 354
YD MEG RFRHTAQF RWR DR P SC+Y QLE P+ L+D++
Sbjct 310 YDHMEGVRFRHTAQFVRWRDDRTPESCTYEQLEEPVKFDLADVL 353
>gi|317126616|ref|YP_004100728.1| ATP dependent DNA ligase [Intrasporangium calvum DSM 43043]
gi|315590704|gb|ADU50001.1| ATP dependent DNA ligase [Intrasporangium calvum DSM 43043]
Length=466
Score = 469 bits (1206), Expect = 4e-130, Method: Compositional matrix adjust.
Identities = 239/361 (67%), Positives = 276/361 (77%), Gaps = 10/361 (2%)
Query 4 PVMPPVSPMLAKSVT---AIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
PV PPV+PMLAK+V A+ YEPKWDGFRSI FR GD+VE+GSRNE+PMTRYFPE
Sbjct 109 PVPPPVAPMLAKAVKDFGAVKGTVVYEPKWDGFRSIIFRSGDEVEIGSRNEKPMTRYFPE 168
Query 61 LVAAIRAELPHRCVIDGEIII---ATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAF 117
+V A++A P R VIDGEII+ + LDFE LQQRIHPA SRVR LA TPASF+AF
Sbjct 169 IVEAVKASFPERAVIDGEIILIDPTEGNRLDFELLQQRIHPAASRVRKLAAETPASFVAF 228
Query 118 DLLALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAG 177
DLLALGD+DY GRPFSERRAAL A+ G+ A +H+T T D + A+ WF +FEGAG
Sbjct 229 DLLALGDEDYRGRPFSERRAALEGALAGAEA----PVHLTAMTADQSVARDWFDQFEGAG 284
Query 178 LDGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQL 237
LDGVIAKP + Y+P+KR+MFK+KH RTADCVVAGYR HK+ AIGSLLLGLY +G L
Sbjct 285 LDGVIAKPVDVRYEPEKRLMFKVKHERTADCVVAGYRTHKTDPTAIGSLLLGLYDGEGNL 344
Query 238 ASVGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLS 297
ASVGVIGA PMA RR L ELQPLV +D+HPWNWA G RTPR +E+SRWN KDLS
Sbjct 345 ASVGVIGALPMARRRELYEELQPLVAEWDEHPWNWAKPEEGVRTPRSSEYSRWNNQKDLS 404
Query 298 FVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL 357
F PLRPERVVEVRYD MEG RFRHTAQF RWRPDR P SC++AQLE P+ L+D++
Sbjct 405 FTPLRPERVVEVRYDHMEGTRFRHTAQFVRWRPDRTPESCTFAQLEEPVGYDLADVLSAG 464
Query 358 R 358
R
Sbjct 465 R 465
>gi|332671092|ref|YP_004454100.1| ATP dependent DNA ligase [Cellulomonas fimi ATCC 484]
gi|332340130|gb|AEE46713.1| ATP dependent DNA ligase [Cellulomonas fimi ATCC 484]
Length=353
Score = 469 bits (1206), Expect = 4e-130, Method: Compositional matrix adjust.
Identities = 245/358 (69%), Positives = 275/358 (77%), Gaps = 13/358 (3%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M+LPVMPPV+PMLAKSV IP EPKWDGFR+I FRDGD+VELGSRNE+PMTRYFPE
Sbjct 1 MRLPVMPPVAPMLAKSVPTIPDVGHVEPKWDGFRTIVFRDGDEVELGSRNEKPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LV AIRA P RCV+DGEI++ T LDF+ALQQRIHPA SRVR+LA TPASF+AFDLL
Sbjct 61 LVEAIRANTPERCVLDGEIVVVTGDRLDFDALQQRIHPAASRVRLLAGSTPASFVAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
AL D+DY RPF +RRAALV+A+ ADA + VTPAT D+A AQ WF+ FEGAGLDG
Sbjct 121 ALDDEDYMQRPFRDRRAALVEAL----ADARDPVFVTPATGDLAQAQDWFTRFEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
V+AKP TYQPDKR MFKIKH RTADCVVAG+R HK+G D +GSLLLGLY +DG L V
Sbjct 177 VVAKPLDGTYQPDKRTMFKIKHERTADCVVAGFRWHKTG-DVVGSLLLGLYDDDGDLQHV 235
Query 241 GVIGAFPMAERRRLLTELQPLV-TSFDDHPWN-WA---AHVAGQRTPRKNEFSRWNVGKD 295
GV +FPMA RR LL +L P DHPW WA AH AG R P SRWN KD
Sbjct 236 GVSASFPMARRRTLLDDLAPYRDVELADHPWGRWAQAEAH-AGNRMP--GAVSRWNAKKD 292
Query 296 LSFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDI 353
LSFVPLRPE VVEV YD MEG RFRHTAQF RWR DRDPRSC+YAQLE+P+T L++I
Sbjct 293 LSFVPLRPELVVEVAYDHMEGDRFRHTAQFRRWRTDRDPRSCTYAQLEQPVTFDLAEI 350
>gi|312196148|ref|YP_004016209.1| ATP dependent DNA ligase [Frankia sp. EuI1c]
gi|311227484|gb|ADP80339.1| ATP dependent DNA ligase [Frankia sp. EuI1c]
Length=360
Score = 457 bits (1176), Expect = 1e-126, Method: Compositional matrix adjust.
Identities = 247/364 (68%), Positives = 284/364 (79%), Gaps = 13/364 (3%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
MQLPVMPPV+PMLAKSV IP ASYEPKWDGFR ICFRDGD+VELGSRNE+PMTRYFPE
Sbjct 1 MQLPVMPPVAPMLAKSVPTIPSGASYEPKWDGFRCICFRDGDEVELGSRNEKPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LV AI+AELP RCV+DGEI+IA D LDFEALQQRIHPA SRV++L+ TPASFIAFDLL
Sbjct 61 LVEAIKAELPDRCVLDGEIVIALDGRLDFEALQQRIHPAVSRVKLLSGTTPASFIAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGD+DYTGRPF+ERRAAL A+ + A IH+T TTD+ A RWF E EGA LDG
Sbjct 121 ALGDEDYTGRPFAERRAALEAALAPAKA----PIHLTTTTTDLDVANRWFVELEGAHLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDA---IGSLLLGLYQEDGQL 237
VIAKP YQPDKRVMFKIKH+RTADCV+AG+R HK+ ++A +GSLLLGLY ++ +L
Sbjct 177 VIAKPLDGVYQPDKRVMFKIKHVRTADCVLAGFRWHKTSTEAAPLVGSLLLGLYNDEHKL 236
Query 238 ASVGVIGAFPMAERRRLLTELQPLVTS-FDDHPWN-WAAHVA--GQRTPRKNEFSRWNVG 293
VGV+GAF R L+ EL PL+ DDHPW WA+ A GQR P +RWN
Sbjct 237 QHVGVVGAFTAKRRAELVDELAPLLLGDGDDHPWQEWASAEAHQGQRLP--GNVNRWNAQ 294
Query 294 KDLSFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDI 353
KDLSF+PLRPERV+EV+Y+ MEG RFRH A F RWR DR P SC+Y QLE+PLT +LSDI
Sbjct 295 KDLSFIPLRPERVLEVKYEHMEGTRFRHLAHFVRWRADRTPASCTYEQLEQPLTYTLSDI 354
Query 354 VPGL 357
VPGL
Sbjct 355 VPGL 358
>gi|119960689|ref|YP_949544.1| ATP-dependent DNA ligase [Arthrobacter aurescens TC1]
gi|119947548|gb|ABM06459.1| putative ATP dependent DNA ligase [Arthrobacter aurescens TC1]
Length=354
Score = 437 bits (1123), Expect = 2e-120, Method: Compositional matrix adjust.
Identities = 216/358 (61%), Positives = 262/358 (74%), Gaps = 11/358 (3%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPVSPMLAKSV IP YEPKWDGFR+I F+DGD++ LGSRNE+PMTRYFPE
Sbjct 1 MDLPVMPPVSPMLAKSVPTIPDVGHYEPKWDGFRTIVFKDGDEIVLGSRNEKPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
+V A+R LP +CVIDGEI++ L+FE LQQRIHPA+SRVRMLA++TPAS IAFD+L
Sbjct 61 VVEALRKNLPDKCVIDGEIVLIEGKRLEFEVLQQRIHPADSRVRMLAEKTPASMIAFDIL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGD++ +PFSERRA L A A A+ ++VTPA TD+ AQ WF + EGAGLDG
Sbjct 121 ALGDENLMDKPFSERRAILERAF----AKAEPPVYVTPAVTDLEQAQEWFVQLEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
V++KP YQP+KRVMFK KH RTADCVVAG+R HK+ + +GS+LLGL+ + G+L V
Sbjct 177 VLSKPLDGAYQPNKRVMFKTKHERTADCVVAGFRWHKT-AKVVGSMLLGLHDDTGRLHHV 235
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPW-NWAAH---VAGQRTPRKNEFSRWNVGKDL 296
GV+ +FPMA R L+ EL+P +HPW WA G R P SRW+ GKD
Sbjct 236 GVVASFPMARREALVAELEPYQVELSEHPWGEWANQDETAGGSRMPGAQ--SRWSGGKDF 293
Query 297 SFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV 354
SFVPLRPE V+EV+YD MEG RFRHT QF RWRPDR P SC+Y+QLE P L +I+
Sbjct 294 SFVPLRPELVIEVKYDYMEGDRFRHTTQFRRWRPDRTPESCTYSQLEEPADYDLGEIL 351
>gi|296129101|ref|YP_003636351.1| ATP dependent DNA ligase [Cellulomonas flavigena DSM 20109]
gi|296020916|gb|ADG74152.1| ATP dependent DNA ligase [Cellulomonas flavigena DSM 20109]
Length=348
Score = 431 bits (1109), Expect = 7e-119, Method: Compositional matrix adjust.
Identities = 230/353 (66%), Positives = 265/353 (76%), Gaps = 7/353 (1%)
Query 6 MPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPELVAAI 65
MPPV+PMLAKSV IP EPKWDGFR+I FRD D VELGSRN +PMTRYFPELV A+
Sbjct 1 MPPVAPMLAKSVKEIPDTGHVEPKWDGFRTIVFRDEDDVELGSRNGKPMTRYFPELVEAL 60
Query 66 RAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLLALGDD 125
+ LP RCV+DGEI++ T LDF+ALQQRIHPA SRV++LA +TPASF+AFDLLALGDD
Sbjct 61 KENLPERCVLDGEIVVVTGDRLDFDALQQRIHPAASRVKLLAGQTPASFVAFDLLALGDD 120
Query 126 DYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDGVIAKP 185
D TGRPFSERRA LV+A+ G A +HVT AT DMA AQRWF++FEGAGLDGV+AKP
Sbjct 121 DLTGRPFSERRARLVEALAG----ARPPVHVTRATGDMAEAQRWFTQFEGAGLDGVVAKP 176
Query 186 PHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASVGVIGA 245
YQPDKR MFKIKH RTADCVVAG+R HK+G D +GSLLLGL+ ++G+L VGV +
Sbjct 177 LDAPYQPDKRAMFKIKHERTADCVVAGFRWHKTG-DVVGSLLLGLWNDEGRLQHVGVSAS 235
Query 246 FPMAERRRLLTELQPLV-TSFDDHPWN-WAAHVAGQRTPRKNEFSRWNVGKDLSFVPLRP 303
FPMA RR LL +L P DHPW WA A SRWN KDLSFVPLRP
Sbjct 236 FPMARRRTLLDDLAPYRDVDLADHPWGAWADQQAHADNRLPGAVSRWNATKDLSFVPLRP 295
Query 304 ERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPG 356
E VVEV YD MEG RFRHTAQF RWR DRDPR+C+Y QL+ P+ L+D++ G
Sbjct 296 ELVVEVAYDHMEGDRFRHTAQFRRWRTDRDPRTCTYEQLDEPVGYDLADVLGG 348
>gi|284990460|ref|YP_003409014.1| ATP dependent DNA ligase [Geodermatophilus obscurus DSM 43160]
gi|284063705|gb|ADB74643.1| ATP dependent DNA ligase [Geodermatophilus obscurus DSM 43160]
Length=359
Score = 428 bits (1101), Expect = 7e-118, Method: Compositional matrix adjust.
Identities = 216/365 (60%), Positives = 267/365 (74%), Gaps = 15/365 (4%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDAS--YEPKWDGFRSICFRDGDQVELGSRNERPMTRYF 58
M LP++PPV PMLAK+VT +P YEPKWDGFR I FRDGD+VELGSRNERP+TRYF
Sbjct 1 MDLPLLPPVKPMLAKAVTKVPTAEGMFYEPKWDGFRCIVFRDGDEVELGSRNERPLTRYF 60
Query 59 PELVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFD 118
PE+V A++A LP RCV+DGEI++ L FEAL QRIHPAESR+R+LA++TPASF+AFD
Sbjct 61 PEVVEAVKAALPERCVVDGEIVVPNGDRLHFEALLQRIHPAESRIRLLAEQTPASFVAFD 120
Query 119 LLALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGL 178
LLA+GD+ PF++RRA L + VTG+ S+HVT T D TAQRWF EFEGAGL
Sbjct 121 LLAIGDESLMETPFAQRRARLQEVVTGTD-----SVHVTAITQDPDTAQRWFQEFEGAGL 175
Query 179 DGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLA 238
DGV+AKP + Y PD+R+M K+KH+RTADCVVAG+R HKSG +GSLLLGLY + G L
Sbjct 176 DGVVAKPADLPYGPDQRLMTKVKHVRTADCVVAGFRWHKSGP-IVGSLLLGLYDDSGDLQ 234
Query 239 SVGVIGAFPMAERRRLLTELQPL-VTSFDDHPW-NWA-AHVAGQRTPRKNEF----SRWN 291
+GV +FPMA R L+ EL P + D HPW +WA A V ++ SRWN
Sbjct 235 HIGVAASFPMARRAELVEELAPYRAEALDGHPWQDWANAQVVNGSNGDEHRMPGAQSRWN 294
Query 292 VGKDLSFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLS 351
GKDLS+VP+RPE VVEV+YD++EG R RHT QF RWRPDR+ RSC+Y QLE P+ L+
Sbjct 295 AGKDLSWVPMRPELVVEVKYDQLEGRRLRHTGQFLRWRPDREARSCTYDQLEVPVRYDLA 354
Query 352 DIVPG 356
++ G
Sbjct 355 EVFDG 359
>gi|302555476|ref|ZP_07307818.1| DNA polymerase LigD, ligase domain-containing protein [Streptomyces
viridochromogenes DSM 40736]
gi|302473094|gb|EFL36187.1| DNA polymerase LigD, ligase domain-containing protein [Streptomyces
viridochromogenes DSM 40736]
Length=357
Score = 426 bits (1095), Expect = 3e-117, Method: Compositional matrix adjust.
Identities = 217/359 (61%), Positives = 261/359 (73%), Gaps = 8/359 (2%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPV PMLAKSV AIP YE KWDGFR+I FRDGD+VELGSR +P+TRYFPE
Sbjct 1 MDLPVMPPVLPMLAKSVAAIPAGMQYEAKWDGFRAIVFRDGDEVELGSRTGKPLTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LV A+R LP RCV+DGEI+IA + LDF+AL +RIHPA+SRVRMLA+RTPAS + FDLL
Sbjct 61 LVTAVRERLPQRCVVDGEIVIAREGHLDFDALTERIHPADSRVRMLAERTPASLVVFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGD+ P +ERR L ++G A +H+ PATTD+ A++WF E+EGAGLDG
Sbjct 121 ALGDESLMDVPLTERREVLTRELSGVTA----PVHLAPATTDIEVARQWFEEYEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKP + Y+PD+R MFK+KH RTAD VVAGYR+HKSG +GSLLLGLY + G L V
Sbjct 177 VIAKPLTVRYRPDQRAMFKVKHERTADVVVAGYRLHKSGP-VVGSLLLGLYDDRGTLQHV 235
Query 241 GVIGAFPMAERRRLLTELQPL-VTSFDDHPW-NWAAHVAGQRTPRKNEFSRWNVGKDLSF 298
GV AF M R L+ EL+PL + HPW W+ A ++ SRW+ KDLS+
Sbjct 236 GVSAAFTMKRRAELVEELEPLRMDDVQGHPWAAWSDEAAHEKARLPGAPSRWSGRKDLSW 295
Query 299 VPLRPERVVEVRYDRME-GARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPG 356
VPLRPERVVEV YD ME G RFRHTA+F RWRPDR P SC+YAQLE P+ L++I+ G
Sbjct 296 VPLRPERVVEVAYDHMENGQRFRHTARFRRWRPDRTPESCTYAQLEEPVRYDLAEILGG 354
>gi|111221544|ref|YP_712338.1| ATP-dependent DNA ligase [Frankia alni ACN14a]
gi|111149076|emb|CAJ60759.1| ATP-dependent DNA ligase (LigC) [Frankia alni ACN14a]
Length=387
Score = 425 bits (1093), Expect = 6e-117, Method: Compositional matrix adjust.
Identities = 224/382 (59%), Positives = 266/382 (70%), Gaps = 30/382 (7%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
+ LPV+PPV PMLA++V IPP YEPKWDGFR++ FRDGD VE+ SR + MTRYFPE
Sbjct 7 VDLPVVPPVKPMLARAVAEIPPGLVYEPKWDGFRALVFRDGDAVEITSRTTKSMTRYFPE 66
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAA+RA LP RCV+DGEI++A +HGLDFEALQQR+HPA SRV LA T SF+AFDLL
Sbjct 67 LVAALRAVLPARCVLDGEIVVAGEHGLDFEALQQRVHPAASRVARLAAETQVSFVAFDLL 126
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
A+GD PF+ RRA L + + G A + +HVTPAT D+ A+RWF +FEGAGLDG
Sbjct 127 AVGDRALLDEPFARRRAELAELLR-PGDAAGVRVHVTPATDDLDLARRWFDQFEGAGLDG 185
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQE---DGQL 237
+IAKPP Y+PD+R MFKIKH RTADCVVAGYR HKSG+ A+GSLLLGLY + DG
Sbjct 186 IIAKPPTGGYEPDRRTMFKIKHERTADCVVAGYRPHKSGAGAVGSLLLGLYPDPDPDGTG 245
Query 238 AS-------------------------VGVIGAFPMAERRRLLTELQPLVTSFDDHPWNW 272
+ VGV AF MA RR L++EL PLV D+HPW
Sbjct 246 TTADADAGPGAGDPAGGSALAGAGLAAVGVTSAFAMARRRELVSELAPLVIPIDEHPWAP 305
Query 273 AAHVAGQRTPRKNEFSRWNVGKDLSFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDR 332
A G RTP SRW G+DLSFVPLRP V EVRYD MEG RFRHT QF R+RPDR
Sbjct 306 AGS-GGTRTPWDAGESRWAAGRDLSFVPLRPVLVAEVRYDHMEGPRFRHTTQFVRFRPDR 364
Query 333 DPRSCSYAQLERPLTVSLSDIV 354
DP SC++AQLERP+ V L+D++
Sbjct 365 DPHSCTFAQLERPVRVDLADVL 386
>gi|336321405|ref|YP_004601373.1| ATP dependent DNA ligase [Cellvibrio gilvus ATCC 13127]
gi|336104986|gb|AEI12805.1| ATP dependent DNA ligase [Cellvibrio gilvus ATCC 13127]
Length=352
Score = 423 bits (1087), Expect = 2e-116, Method: Compositional matrix adjust.
Identities = 228/360 (64%), Positives = 267/360 (75%), Gaps = 12/360 (3%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M+LPVMPPV+PMLA+SV IP EPKWDGFR+I FRDGD+VELGSRNE+P+TRYFPE
Sbjct 1 MRLPVMPPVAPMLARSVKDIPDVGHVEPKWDGFRTIVFRDGDEVELGSRNEKPLTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LV I+A P RCV+DGEI+I L ++AL RIHPA SRVR+LA++TPAS +AFDLL
Sbjct 61 LVEQIKAHTPDRCVLDGEIVIVEGDHLAWDALTNRIHPAASRVRLLAEQTPASLVAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGD+D G P +RR LVDA+ +A +HVTPAT DM A RWF++FEGAGLDG
Sbjct 121 ALGDEDLMGAPLRDRRRRLVDAL----GEAHSPVHVTPATADMDEAHRWFTQFEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
V+AKP TYQPDKR MFK+KH RTADCVVAG+R HK+G +GSLLLGL+ ++G L V
Sbjct 177 VVAKPLDGTYQPDKRAMFKVKHERTADCVVAGFRWHKTGG-ILGSLLLGLWDDEGHLQHV 235
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPW-NWA---AHVAGQRTPRKNEFSRWNVGKDL 296
GV +FPMA R L+ EL PL T DHPW WA AH AG R P SRWN KDL
Sbjct 236 GVAASFPMARRAALIEELAPLRTDVGDHPWAQWADSDAH-AGNRLP--GAVSRWNATKDL 292
Query 297 SFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPG 356
SF PLRPE VVEV YD MEG RFRHTAQF RWRPDRDP +C+YAQLE P+ L+D++ G
Sbjct 293 SFEPLRPELVVEVAYDHMEGTRFRHTAQFRRWRPDRDPATCTYAQLETPVRFDLADVLGG 352
>gi|288917128|ref|ZP_06411498.1| ATP dependent DNA ligase [Frankia sp. EUN1f]
gi|288351497|gb|EFC85704.1| ATP dependent DNA ligase [Frankia sp. EUN1f]
Length=387
Score = 423 bits (1087), Expect = 2e-116, Method: Compositional matrix adjust.
Identities = 223/385 (58%), Positives = 261/385 (68%), Gaps = 30/385 (7%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPV PMLA++ +AIPP YEPKWDGFR++ FRDG ++E+ SRN RPMTRYFPE
Sbjct 1 MDLPVMPPVKPMLARAASAIPPGMLYEPKWDGFRALVFRDGAELEITSRNTRPMTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LV + A LP RCV+DGEI++ GLDFE L QR+HPA SRV LA TP SF+AFDLL
Sbjct 61 LVEILLAVLPERCVLDGEIVVIAPGGLDFEELSQRVHPAASRVDRLARETPVSFVAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVT-------------GSG-ADADL-------SIHVTPA 159
ALGD G P + RRAAL D + GSG A +L +++TPA
Sbjct 121 ALGDTALVGEPLARRRAALEDLLAGRTGPGVASSPPPGSGPAGTELPPGRPPAGVYLTPA 180
Query 160 TTDMATAQRWFSEFEGAGLDGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSG 219
T D A WF FEGAGLDG++AKPP Y+PDKR M K+KH RTADCVVAGYR +K+
Sbjct 181 TDDPDVAADWFRRFEGAGLDGLVAKPPAGHYEPDKRAMIKVKHERTADCVVAGYRPYKND 240
Query 220 SDAIGSLLLGLYQEDGQLASVGVIGAFPMAERRRLLTELQPLVTSFDDHPW--------N 271
A+GSLLLGLY + L SVGV AFPMA RR L+ EL PLVT+ DDHPW
Sbjct 241 PAAVGSLLLGLY-DGSSLLSVGVTSAFPMARRRELVGELAPLVTAIDDHPWARPGGPDGT 299
Query 272 WAAHVAGQRTPRKNEFSRWNVGKDLSFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPD 331
A A RTP SRW G+DLSFVPLRPERVVEVRYD MEG RFRHT QF R+RPD
Sbjct 300 EGADGAATRTPWDAGESRWARGRDLSFVPLRPERVVEVRYDHMEGPRFRHTTQFVRFRPD 359
Query 332 RDPRSCSYAQLERPLTVSLSDIVPG 356
RDP C+Y QLERP+ ++D++ G
Sbjct 360 RDPLECTYEQLERPVGFEIADVLSG 384
>gi|291455296|ref|ZP_06594686.1| ATP-dependent DNA ligase [Streptomyces albus J1074]
gi|291358245|gb|EFE85147.1| ATP-dependent DNA ligase [Streptomyces albus J1074]
Length=355
Score = 420 bits (1079), Expect = 2e-115, Method: Compositional matrix adjust.
Identities = 212/356 (60%), Positives = 253/356 (72%), Gaps = 7/356 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPV PMLAKSV IPP YE KWDGFR++ FRDG ++ELGSR + +TRYFPE
Sbjct 1 MDLPVMPPVKPMLAKSVARIPPGMQYEAKWDGFRALVFRDGPELELGSRTGKTLTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LVAA+ LP RCV+DGEI++A D LDFE L +RIHPA SRVRMLA+R PASF+AFDLL
Sbjct 61 LVAALLERLPERCVVDGEIVMARDGRLDFELLSERIHPAASRVRMLAERNPASFVAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGD+D T RP + RRA L + + +A +HV PAT D A+RWF FEGAGLDG
Sbjct 121 ALGDEDLTTRPLTARRALLEEEL----GEAAPPLHVAPATRDPELAERWFDRFEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
V+AKP ++ Y+P++RVM+KIKH RTADCVVAGYR H+ G+ +GSLLLGLY + G L V
Sbjct 177 VVAKPLNLGYRPNERVMYKIKHGRTADCVVAGYRTHRGGT-GVGSLLLGLYDDAGTLQHV 235
Query 241 GVIGAFPMAERRRLLTELQPL-VTSFDDHPW-NWAAHVAGQRTPRKNEFSRWNVGKDLSF 298
GV AF R L+ EL+PL + S DHPW W A + SRW+ KDLS+
Sbjct 236 GVCAAFTARRRTELIAELEPLRLESVADHPWAAWGEAAAHEEARLPGAPSRWSGTKDLSW 295
Query 299 VPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV 354
VPLRPERV EV YD MEG RFRHT QF RWRPDR P SC+YAQL P+ L ++
Sbjct 296 VPLRPERVCEVGYDHMEGTRFRHTTQFKRWRPDRTPESCTYAQLAEPVRYDLGAVL 351
>gi|297190639|ref|ZP_06908037.1| ATP-dependent DNA ligase [Streptomyces pristinaespiralis ATCC
25486]
gi|297150569|gb|EFH30670.1| ATP-dependent DNA ligase [Streptomyces pristinaespiralis ATCC
25486]
Length=356
Score = 418 bits (1074), Expect = 7e-115, Method: Compositional matrix adjust.
Identities = 216/360 (60%), Positives = 262/360 (73%), Gaps = 13/360 (3%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPV PMLAK+V IPP YE KWDGFR+I RDGD++ +GSR +P+TRYFPE
Sbjct 1 MDLPVMPPVKPMLAKAVKKIPPGMHYEAKWDGFRAIVHRDGDELVIGSRTGKPLTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LV ++ LP RCVIDGEI+IA + LDF+ L +RIHPA+SRVRMLA+RTPASF+AFD+L
Sbjct 61 LVTSLSENLPARCVIDGEIVIAHEGRLDFDRLTERIHPADSRVRMLAERTPASFVAFDVL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGD+ P RR L +A+ ADA +H+TP TTD+ AQRWF ++EGAGLDG
Sbjct 121 ALGDESLMDAPLGARRERLEEAL----ADARPPVHLTPTTTDVEVAQRWFEQYEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
V+AKP + Y+PD R+M+K+KH RTAD VVAGYR HKSG +GSLLLGL+ + G L V
Sbjct 177 VVAKPLDLPYRPDVRLMYKVKHERTADVVVAGYRFHKSGP-VVGSLLLGLFDDSGALQHV 235
Query 241 GVIGAFPMAERRRLLTELQPL-VTSFDDHPW-NWA---AHVAGQRTPRKNEFSRWNVGKD 295
GV AF M R L+ EL+PL + + HPW WA AH AG R P SRW+ KD
Sbjct 236 GVCAAFSMKRREELVAELEPLRMDPVEGHPWAAWAEESAH-AGARLP--GAPSRWSGKKD 292
Query 296 LSFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVP 355
LS+V LRPERVVEV YD MEG RFRHTAQF RWRPDRDP SC+YAQLE P++ L+ ++P
Sbjct 293 LSWVALRPERVVEVAYDHMEGDRFRHTAQFRRWRPDRDPSSCTYAQLEEPVSYDLAQVLP 352
>gi|29828239|ref|NP_822873.1| ATP-dependent DNA ligase [Streptomyces avermitilis MA-4680]
gi|29605341|dbj|BAC69408.1| putative DNA ligase [Streptomyces avermitilis MA-4680]
Length=356
Score = 417 bits (1071), Expect = 2e-114, Method: Compositional matrix adjust.
Identities = 222/357 (63%), Positives = 262/357 (74%), Gaps = 8/357 (2%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPV PMLAKSV IPPD YE KWDGFR+I FRDG +VELGSR +P+TRYFPE
Sbjct 1 MDLPVMPPVKPMLAKSVAKIPPDMQYEAKWDGFRAIVFRDGTEVELGSRTGKPLTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LV A+R LP RCVIDGEI+IA D LDF+AL +RIHPAESRVRMLA++TPASF+AFDLL
Sbjct 61 LVEALRDRLPERCVIDGEIVIARDGRLDFDALTERIHPAESRVRMLAEKTPASFVAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
AL DD P +ERRA L A++G A +HV PATTD A++WF ++EGAGLDG
Sbjct 121 ALADDSLLDTPLTERRALLESALSGVTA----PVHVAPATTDREVAEQWFEQYEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKP + Y+ D+R MFK+KH RTAD VVAGYR+HKSG +GSLLLGLY + G L V
Sbjct 177 VIAKPLTLRYRQDERAMFKVKHERTADVVVAGYRLHKSGP-VVGSLLLGLYDDRGALQHV 235
Query 241 GVIGAFPMAERRRLLTELQPL-VTSFDDHPW-NWAAHVAGQRTPRKNEFSRWNVGKDLSF 298
GV AFPM R L+ EL+PL + HPW W+ A + SRW+ KDLS+
Sbjct 236 GVSAAFPMKRRAELVEELEPLRMEDAAGHPWAAWSNEAAHETARLPGAPSRWSGKKDLSW 295
Query 299 VPLRPERVVEVRYDRME-GARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV 354
VPLRPERV EV YD ME GARFRHTA+F RWRPDR P SC+YAQLE P++ L++I+
Sbjct 296 VPLRPERVAEVAYDHMENGARFRHTARFRRWRPDRTPESCTYAQLEEPVSYDLTEIL 352
>gi|302557157|ref|ZP_07309499.1| DNA ligase [Streptomyces griseoflavus Tu4000]
gi|302474775|gb|EFL37868.1| DNA ligase [Streptomyces griseoflavus Tu4000]
Length=355
Score = 415 bits (1066), Expect = 6e-114, Method: Compositional matrix adjust.
Identities = 215/357 (61%), Positives = 256/357 (72%), Gaps = 8/357 (2%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPV PMLAKSV IPP YE KWDGFR+I FRDGD+VELGSR +P+TRYFPE
Sbjct 1 MDLPVMPPVKPMLAKSVARIPPGMQYEAKWDGFRAIVFRDGDEVELGSRTGKPLTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LV A+R LP RCV+DGEI+IA + LDF+AL +RIHPA+SRVR LA RTPASF+AFDLL
Sbjct 61 LVEAVRERLPERCVMDGEIVIAREGHLDFDALTERIHPADSRVRTLAGRTPASFVAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGD+ P +ERR L + G +H+ PATTD+ A+ WF ++EGAGLDG
Sbjct 121 ALGDESLLEVPQTERRERLAGVLEG----VRPPVHLAPATTDIDVARGWFEQYEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
VIAKPP + Y+ D+R MFKIKH RTAD VVAGYR+HKSG +GSLLLGLY ++G+L V
Sbjct 177 VIAKPPTLRYRQDERAMFKIKHERTADVVVAGYRLHKSGP-VVGSLLLGLYDDEGRLQHV 235
Query 241 GVIGAFPMAERRRLLTELQPL-VTSFDDHPW-NWAAHVAGQRTPRKNEFSRWNVGKDLSF 298
GV AF M R L+ EL+PL + HPW +WA A + SRW+ KDLS+
Sbjct 236 GVSAAFSMKRRAELIEELEPLRMDDVTGHPWASWADESAHESARLPGAPSRWSGRKDLSW 295
Query 299 VPLRPERVVEVRYDRME-GARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV 354
VPLRPERV EV YD ME G RFRHTA+F RWRPDR P SC Y QLE P+ L++I+
Sbjct 296 VPLRPERVAEVAYDHMENGRRFRHTARFRRWRPDRTPESCVYGQLEEPVRYDLAEIL 352
>gi|337769488|emb|CCB78201.1| ATP-dependent DNA ligase [Streptomyces cattleya NRRL 8057]
Length=359
Score = 414 bits (1063), Expect = 2e-113, Method: Compositional matrix adjust.
Identities = 214/357 (60%), Positives = 262/357 (74%), Gaps = 7/357 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPV PMLA+ IPP SYE KWDGFR+I FRDGD+VELGSR +P+TRYFPE
Sbjct 1 MDLPVMPPVKPMLARLAATIPPGMSYEAKWDGFRAIVFRDGDEVELGSRTAKPLTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
+V A+RA +P RCV+DGEI+IA LDF+AL +RIHPA+SRV +L+ RTPASF+AFD+L
Sbjct 61 VVEAVRANVPGRCVLDGEIVIARGGRLDFDALLERIHPAKSRVELLSRRTPASFVAFDIL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGD +RRA L +A+ G+ +H+ PATTD+A A+ WFS +EGAGLDG
Sbjct 121 ALGDRSLMAAAQRDRRALLAEALAGAVH----PVHIAPATTDLALAEEWFSRYEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
V+AKP + Y+PD+RVM K+KH RTADCVVAG+R HKSG +GSLLLGL+ G L V
Sbjct 177 VVAKPLDLPYRPDERVMVKVKHERTADCVVAGFRYHKSGP-VVGSLLLGLHDAAGGLRHV 235
Query 241 GVIGAFPMAERRRLLTELQPL-VTSFDDHPW-NWAAHVAGQRTPRKNEFSRWNVGKDLSF 298
GV AFPMA R+ LLTEL+PL + SF+ HPW +WA A SRW+ KDLS+
Sbjct 236 GVTSAFPMARRKALLTELEPLRMASFEGHPWAHWADPEAHTTDRMPGAPSRWSGKKDLSW 295
Query 299 VPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVP 355
+PLRPERV EV YD M+G RFRHTAQF RWRPDRDP C+YAQL P+ L+D++P
Sbjct 296 IPLRPERVCEVAYDHMQGDRFRHTAQFRRWRPDRDPGDCTYAQLAEPVRYELADVLP 352
>gi|271967966|ref|YP_003342162.1| ATP-dependent DNA ligase [Streptosporangium roseum DSM 43021]
gi|270511141|gb|ACZ89419.1| ATP-dependent DNA ligase [Streptosporangium roseum DSM 43021]
Length=346
Score = 413 bits (1061), Expect = 2e-113, Method: Compositional matrix adjust.
Identities = 212/359 (60%), Positives = 254/359 (71%), Gaps = 16/359 (4%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDAS---YEPKWDGFRSICFRDGDQVELGSRNERPMTRY 57
M+LP+ PP++PMLAK+V ++PP YEPKWDGFR + FRDGD+V LGSRNERP TRY
Sbjct 1 MRLPIAPPLAPMLAKAVRSLPPQDGTLFYEPKWDGFRCVVFRDGDEVYLGSRNERPFTRY 60
Query 58 FPELVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAF 117
FPELV A+RAELP R V+DGEI++ LDFEALQQRIHPA SRVR+LA +TPASF+AF
Sbjct 61 FPELVEAVRAELPDRVVVDGEIVVRDGQTLDFEALQQRIHPAASRVRLLAGQTPASFVAF 120
Query 118 DLLALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAG 177
DLLALG++ PF+ RR L G+G ++ +TP TT A WF+ FEGAG
Sbjct 121 DLLALGEESLLDVPFAARRTRLESIFGGAGH----AVRLTPITTSEERAAEWFAAFEGAG 176
Query 178 LDGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQL 237
LDG++ KP + YQPDKRVM K+KH RTAD VVAGYR HKSG +GSLLLGL+ +G L
Sbjct 177 LDGIVVKPGGLPYQPDKRVMSKVKHERTADVVVAGYREHKSGP-VVGSLLLGLHDAEGVL 235
Query 238 ASVGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLS 297
VGV +F M R L+ EL P V+ DHPW+ AA + G S+W+ KDLS
Sbjct 236 HHVGVAASFTMKRRAELVEELAPYVSRDGDHPWS-AASLPGA-------ISKWSATKDLS 287
Query 298 FVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPG 356
FVPLR E VVEV YD MEG RFRHTAQF RWRPDR P SC+Y QLERP++ L DI+ G
Sbjct 288 FVPLRSELVVEVAYDHMEGRRFRHTAQFRRWRPDRTPESCTYEQLERPVSYDLDDILTG 346
>gi|302540328|ref|ZP_07292670.1| putative DNA ligase [Streptomyces hygroscopicus ATCC 53653]
gi|302457946|gb|EFL21039.1| putative DNA ligase [Streptomyces himastatinicus ATCC 53653]
Length=353
Score = 412 bits (1059), Expect = 4e-113, Method: Compositional matrix adjust.
Identities = 209/356 (59%), Positives = 259/356 (73%), Gaps = 7/356 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPV+PMLAKSV IPP YE KWDGFR+I FRDGD++E+GSR +P+TRYFPE
Sbjct 1 MDLPVMPPVAPMLAKSVATIPPGMRYEAKWDGFRAIVFRDGDEIEVGSRTGKPLTRYFPE 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LV A R LP RCV+DGEI+IA + LDF+AL +RIHPA+SRVRMLA TPA F+AFDLL
Sbjct 61 LVDAFRTHLPPRCVLDGEIVIAREGRLDFDALLERIHPADSRVRMLARTTPAGFVAFDLL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
ALGD Y P SERR AL +A+ +A + P T D+ A+RWF +EGAGLDG
Sbjct 121 ALGDTSYLDAPLSERRDALTEALR----EAADPVFTAPWTDDVDVARRWFDHYEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
++AK P + Y+P +RVM K+KH RTADCVVAG R+HKSG +GSLLLGL+ G+L V
Sbjct 177 IVAKRPDLGYRPGERVMVKVKHERTADCVVAGLRLHKSGP-VVGSLLLGLHDATGRLQHV 235
Query 241 GVIGAFPMAERRRLLTELQPL-VTSFDDHPW-NWAAHVAGQRTPRKNEFSRWNVGKDLSF 298
GV AFPM R+ L+TEL+PL + S + HPW +WA A ++ SRW KDLS+
Sbjct 236 GVCAAFPMRRRQELMTELEPLRMESVEGHPWADWAREEAHAQSRMPGAPSRWTGVKDLSW 295
Query 299 VPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV 354
+PLRPERV EV YD M+G RFRHTA+F RWRPDR+P C+YAQLE P++ L +++
Sbjct 296 LPLRPERVCEVAYDHMQGDRFRHTARFRRWRPDREPGDCTYAQLEEPVSYDLREVL 351
>gi|158316925|ref|YP_001509433.1| ATP-dependent DNA ligase [Frankia sp. EAN1pec]
gi|158112330|gb|ABW14527.1| ATP dependent DNA ligase [Frankia sp. EAN1pec]
Length=408
Score = 411 bits (1057), Expect = 7e-113, Method: Compositional matrix adjust.
Identities = 215/397 (55%), Positives = 261/397 (66%), Gaps = 43/397 (10%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
+ LPV PPV PMLA++ IPPD YEPKWDGFR++ FRDG ++E+ SRN RPMTRYFPE
Sbjct 7 VDLPVTPPVKPMLARAAPQIPPDMLYEPKWDGFRALVFRDGAELEITSRNTRPMTRYFPE 66
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LV + A LP RCV+DGEI++ +GLDFE L QR+HPA SRV LA TP SF+AFDLL
Sbjct 67 LVEVLLAALPDRCVLDGEIVVVGPNGLDFEELSQRVHPATSRVAKLALETPVSFVAFDLL 126
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADA----------DLSIHVTPATTDMATAQRWF 170
ALGD+ +T +PF+ RRA L + + G A +++TP+T ++ A++WF
Sbjct 127 ALGDEAFTDQPFARRRAVLEEVLAGHAGPAAPGTAPARRIPSGVYLTPSTGELDMARQWF 186
Query 171 SEFEGAGLDGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGL 230
+EGAGLDG++AKPP YQPDKR MFKIKH RTADCVVAGYR HK+ +A+GSLLLGL
Sbjct 187 ELYEGAGLDGLVAKPPDGAYQPDKRAMFKIKHDRTADCVVAGYRPHKNDPEAVGSLLLGL 246
Query 231 YQE---------------DGQLASVGVIGAFPMAERRRLLTELQPLVTSFDDHPW----- 270
Y + + L SVGV AFPMA RR L+ EL LV D HPW
Sbjct 247 YADPADEADPENATDPARESPLLSVGVTSAFPMARRRELVRELAHLVVPIDSHPWARQGP 306
Query 271 NWAAHVAGQ-------------RTPRKNEFSRWNVGKDLSFVPLRPERVVEVRYDRMEGA 317
AA G RTP SRW G+DLSFVPLRPE VVEVRYD MEG
Sbjct 307 ENAAQPGGDAGEEPAAAAGQPARTPWDVGESRWARGRDLSFVPLRPELVVEVRYDHMEGP 366
Query 318 RFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV 354
RFRHT QF R+RPDRDP C+YAQLERP+ ++D++
Sbjct 367 RFRHTTQFVRFRPDRDPGGCTYAQLERPVRFDIADVL 403
>gi|239992053|ref|ZP_04712717.1| ATP-dependent DNA ligase [Streptomyces roseosporus NRRL 11379]
Length=353
Score = 411 bits (1056), Expect = 1e-112, Method: Compositional matrix adjust.
Identities = 208/357 (59%), Positives = 255/357 (72%), Gaps = 6/357 (1%)
Query 1 MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE 60
M LPVMPPV PMLAKSV IPP +YE KWDGFR+I +RDGD+VE+GSR + +TRYFP+
Sbjct 1 MDLPVMPPVKPMLAKSVARIPPGMAYEAKWDGFRAIVYRDGDEVEIGSRTGKSLTRYFPD 60
Query 61 LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL 120
LV A+R LP RCVIDGEI+IA + LDFE L +RIHPA+SRVRMLA++TPASFIAFD+L
Sbjct 61 LVDAVRDNLPPRCVIDGEIVIAHEGRLDFERLSERIHPADSRVRMLAEQTPASFIAFDVL 120
Query 121 ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG 180
A+ D +ERR L A++G+ A + + P+TTD+ A++WF +EGAGLDG
Sbjct 121 AVDDTSLLSTRQAERREVLKAALSGASA----PVLLAPSTTDIEIARQWFDRYEGAGLDG 176
Query 181 VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV 240
V+AKP + Y+PD R M+KIKH RTAD VVAGYR HKSG +GSLLLGLY +G L V
Sbjct 177 VVAKPLDLPYRPDTRAMYKIKHERTADVVVAGYREHKSGP-VVGSLLLGLYDTEGVLQHV 235
Query 241 GVIGAFPMAERRRLLTELQPLVTSFDDHPWN-WAAHVAGQRTPRKNEFSRWNVGKDLSFV 299
GV AFPM R L EL PL F +HPW WA A +++ +RW+ KD S+V
Sbjct 236 GVCAAFPMKRRAELAEELAPLRCEFAEHPWGAWADAAAHEQSRLPGTQNRWSGKKDQSWV 295
Query 300 PLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPG 356
PLRPERV EV YD MEG RFRHT QF RWRPDR P SC+YAQLE ++ LS+++ G
Sbjct 296 PLRPERVCEVAYDHMEGDRFRHTTQFRRWRPDRSPASCTYAQLEEVVSYDLSEVLSG 352
Lambda K H
0.322 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 666731534350
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40