BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3731

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|308232550|ref|ZP_07416427.2|  ATP-dependent DNA ligase ligC [M...   738    0.0   
gi|308369215|ref|ZP_07666688.1|  ATP-dependent DNA ligase ligC [M...   735    0.0   
gi|15610867|ref|NP_218248.1|  ATP-dependent DNA ligase [Mycobacte...   734    0.0   
gi|15843352|ref|NP_338389.1|  ATP-dependent DNA ligase [Mycobacte...   731    0.0   
gi|41406439|ref|NP_959275.1|  ATP-dependent DNA ligase [Mycobacte...   640    0.0   
gi|254818488|ref|ZP_05223489.1|  ATP-dependent DNA ligase [Mycoba...   640    0.0   
gi|118463802|ref|YP_879648.1|  ATP-dependent DNA ligase [Mycobact...   634    6e-180
gi|296166843|ref|ZP_06849260.1|  ATP-dependent DNA ligase [Mycoba...   634    7e-180
gi|336459741|gb|EGO38661.1|  ATP-dependent DNA ligase [Mycobacter...   634    7e-180
gi|240171065|ref|ZP_04749724.1|  ATP-dependent DNA ligase [Mycoba...   633    1e-179
gi|254773367|ref|ZP_05214883.1|  ATP-dependent DNA ligase [Mycoba...   630    8e-179
gi|342859960|ref|ZP_08716612.1|  ATP-dependent DNA ligase [Mycoba...   629    2e-178
gi|183985234|ref|YP_001853525.1|  ATP-dependent DNA ligase LigC [...   627    1e-177
gi|118619483|ref|YP_907815.1|  ATP-dependent DNA ligase [Mycobact...   614    7e-174
gi|169627384|ref|YP_001701033.1|  ATP-dependent DNA ligase [Mycob...   577    1e-162
gi|120406492|ref|YP_956321.1|  ATP-dependent DNA ligase [Mycobact...   561    8e-158
gi|126437883|ref|YP_001073574.1|  ATP-dependent DNA ligase [Mycob...   555    6e-156
gi|108801902|ref|YP_642099.1|  ATP-dependent DNA ligase [Mycobact...   555    6e-156
gi|145221846|ref|YP_001132524.1|  ATP-dependent DNA ligase [Mycob...   551    5e-155
gi|258651070|ref|YP_003200226.1|  ATP-dependent DNA ligase [Nakam...   544    9e-153
gi|118472839|ref|YP_890521.1|  ATP-dependent DNA ligase [Mycobact...   534    8e-150
gi|315446417|ref|YP_004079296.1|  ATP-dependent DNA ligase [Mycob...   531    5e-149
gi|336117096|ref|YP_004571863.1|  ATP-dependent DNA ligase LigC [...   526    2e-147
gi|126437855|ref|YP_001073546.1|  ATP-dependent DNA ligase [Mycob...   523    3e-146
gi|220914592|ref|YP_002489901.1|  ATP-dependent DNA ligase [Arthr...   506    2e-141
gi|331698479|ref|YP_004334718.1|  ATP dependent DNA ligase [Pseud...   498    7e-139
gi|325001866|ref|ZP_08122978.1|  ATP-dependent DNA ligase [Pseudo...   496    2e-138
gi|325965207|ref|YP_004243113.1|  ATP-dependent DNA ligase [Arthr...   494    8e-138
gi|116672625|ref|YP_833558.1|  ATP-dependent DNA ligase [Arthroba...   489    3e-136
gi|84496262|ref|ZP_00995116.1|  DNA ligase [Janibacter sp. HTCC26...   480    2e-133
gi|284031238|ref|YP_003381169.1|  ATP dependent DNA ligase [Kribb...   471    5e-131
gi|317126616|ref|YP_004100728.1|  ATP dependent DNA ligase [Intra...   469    4e-130
gi|332671092|ref|YP_004454100.1|  ATP dependent DNA ligase [Cellu...   469    4e-130
gi|312196148|ref|YP_004016209.1|  ATP dependent DNA ligase [Frank...   457    1e-126
gi|119960689|ref|YP_949544.1|  ATP-dependent DNA ligase [Arthroba...   437    2e-120
gi|296129101|ref|YP_003636351.1|  ATP dependent DNA ligase [Cellu...   431    7e-119
gi|284990460|ref|YP_003409014.1|  ATP dependent DNA ligase [Geode...   428    7e-118
gi|302555476|ref|ZP_07307818.1|  DNA polymerase LigD, ligase doma...   426    3e-117
gi|111221544|ref|YP_712338.1|  ATP-dependent DNA ligase [Frankia ...   425    6e-117
gi|336321405|ref|YP_004601373.1|  ATP dependent DNA ligase [Cellv...   423    2e-116
gi|288917128|ref|ZP_06411498.1|  ATP dependent DNA ligase [Franki...   423    2e-116
gi|291455296|ref|ZP_06594686.1|  ATP-dependent DNA ligase [Strept...   420    2e-115
gi|297190639|ref|ZP_06908037.1|  ATP-dependent DNA ligase [Strept...   418    7e-115
gi|29828239|ref|NP_822873.1|  ATP-dependent DNA ligase [Streptomy...   417    2e-114
gi|302557157|ref|ZP_07309499.1|  DNA ligase [Streptomyces griseof...   415    6e-114
gi|337769488|emb|CCB78201.1|  ATP-dependent DNA ligase [Streptomy...   414    2e-113
gi|271967966|ref|YP_003342162.1|  ATP-dependent DNA ligase [Strep...   413    2e-113
gi|302540328|ref|ZP_07292670.1|  putative DNA ligase [Streptomyce...   412    4e-113
gi|158316925|ref|YP_001509433.1|  ATP-dependent DNA ligase [Frank...   411    7e-113
gi|239992053|ref|ZP_04712717.1|  ATP-dependent DNA ligase [Strept...   411    1e-112


>gi|308232550|ref|ZP_07416427.2| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu001]
 gi|308379603|ref|ZP_07486868.2| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu010]
 gi|308380790|ref|ZP_07491085.2| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu011]
 gi|308213616|gb|EFO73015.1| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu001]
 gi|308356479|gb|EFP45330.1| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu010]
 gi|308360425|gb|EFP49276.1| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu011]
Length=403

 Score =  738 bits (1904),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 358/358 (100%), Positives = 358/358 (100%), Gaps = 0/358 (0%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE
Sbjct  46   MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  105

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL
Sbjct  106  LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  165

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG
Sbjct  166  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  225

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV
Sbjct  226  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  285

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300
            GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP
Sbjct  286  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  345

Query  301  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR  358
            LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR
Sbjct  346  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR  403


>gi|308369215|ref|ZP_07666688.1| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu002]
 gi|308371438|ref|ZP_07667163.1| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu003]
 gi|308372640|ref|ZP_07429333.2| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu004]
 9 more sequence titles
 Length=403

 Score =  735 bits (1897),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 357/358 (99%), Positives = 357/358 (99%), Gaps = 0/358 (0%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE
Sbjct  46   MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  105

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL
Sbjct  106  LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  165

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG
Sbjct  166  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  225

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV
Sbjct  226  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  285

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300
            GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP
Sbjct  286  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  345

Query  301  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR  358
            LRPERVVEVRYD MEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR
Sbjct  346  LRPERVVEVRYDHMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR  403


>gi|15610867|ref|NP_218248.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis H37Rv]
 gi|148663597|ref|YP_001285120.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis H37Ra]
 gi|167970888|ref|ZP_02553165.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis H37Ra]
 gi|307086528|ref|ZP_07495641.1| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu012]
 gi|2960155|emb|CAA18053.1| POSSIBLE ATP-DEPENDENT DNA LIGASE LIGC (POLYDEOXYRIBONUCLEOTIDE 
SYNTHASE [ATP]) (POLYNUCLEOTIDE LIGASE [ATP]) (SEALASE) (DNA 
REPAIR PROTEIN) (DNA JOINASE) [Mycobacterium tuberculosis 
H37Rv]
 gi|148507749|gb|ABQ75558.1| ATP-dependent DNA ligase LigC [Mycobacterium tuberculosis H37Ra]
 gi|308364012|gb|EFP52863.1| ATP-dependent DNA ligase ligC [Mycobacterium tuberculosis SUMu012]
Length=358

 Score =  734 bits (1894),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 358/358 (100%), Positives = 358/358 (100%), Gaps = 0/358 (0%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE
Sbjct  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL
Sbjct  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG
Sbjct  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV
Sbjct  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300
            GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP
Sbjct  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300

Query  301  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR  358
            LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR
Sbjct  301  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR  358


>gi|15843352|ref|NP_338389.1| ATP-dependent DNA ligase [Mycobacterium tuberculosis CDC1551]
 gi|31794903|ref|NP_857396.1| ATP-dependent DNA ligase [Mycobacterium bovis AF2122/97]
 gi|121639647|ref|YP_979871.1| ATP-dependent DNA ligase [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 55 more sequence titles
 Length=358

 Score =  731 bits (1887),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 357/358 (99%), Positives = 357/358 (99%), Gaps = 0/358 (0%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE
Sbjct  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL
Sbjct  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG
Sbjct  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV
Sbjct  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300
            GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP
Sbjct  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300

Query  301  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR  358
            LRPERVVEVRYD MEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR
Sbjct  301  LRPERVVEVRYDHMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGLR  358


>gi|41406439|ref|NP_959275.1| ATP-dependent DNA ligase [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41394788|gb|AAS02658.1| LigC [Mycobacterium avium subsp. paratuberculosis K-10]
Length=369

 Score =  640 bits (1652),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 311/357 (88%), Positives = 329/357 (93%), Gaps = 4/357 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPVSPMLAKSV AIPP ASYEPKWDGFRSICFRDGD+VELGSRNERPMTRYFPE
Sbjct  1    MDLPVMPPVSPMLAKSVGAIPPAASYEPKWDGFRSICFRDGDEVELGSRNERPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAA+RAELP RCVIDGEI+IATDHGLDFEALQQR+HPAESRVRMLA+ TPASFIAFDLL
Sbjct  61   LVAAVRAELPQRCVIDGEIVIATDHGLDFEALQQRVHPAESRVRMLAEATPASFIAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGD+DYTGRPF ERRAAL++AV G G     SIHVTPATTD+ TA+RWF EFEGAGLDG
Sbjct  121  ALGDEDYTGRPFRERRAALLEAVGGPGP----SIHVTPATTDLDTARRWFDEFEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            V+AKP  ITYQPDKRVMFKIKH RTADCVVAGYRVHKSG+DAIGSLLLGLYQ+DGQLASV
Sbjct  177  VVAKPLDITYQPDKRVMFKIKHERTADCVVAGYRVHKSGADAIGSLLLGLYQDDGQLASV  236

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300
            GVIGAFPMAERRRL TELQPLVT F+DHPWNWAAH AG+RTPRKNEFSRWN GKDLSFVP
Sbjct  237  GVIGAFPMAERRRLFTELQPLVTDFEDHPWNWAAHQAGERTPRKNEFSRWNAGKDLSFVP  296

Query  301  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL  357
            LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+Y QLE+P+T  L DIVPGL
Sbjct  297  LRPERVVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYEQLEQPVTFRLDDIVPGL  353


>gi|254818488|ref|ZP_05223489.1| ATP-dependent DNA ligase [Mycobacterium intracellulare ATCC 13950]
Length=356

 Score =  640 bits (1651),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 313/357 (88%), Positives = 327/357 (92%), Gaps = 4/357 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPVSPMLAKSV AIPP ASYEPKWDGFRSICFRDGD VELGSRNERPMTRYFPE
Sbjct  1    MDLPVMPPVSPMLAKSVRAIPPHASYEPKWDGFRSICFRDGDDVELGSRNERPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAA+RAELP RCVIDGEI+IATDHGLDFEALQQRIHPA+SRVRMLA+ TPASFIAFDLL
Sbjct  61   LVAAVRAELPERCVIDGEIVIATDHGLDFEALQQRIHPADSRVRMLAEATPASFIAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALG DDYT RPFSERRAALVDAV GSG     SIHVTPATTD+ TAQRWF EFEGAGLDG
Sbjct  121  ALGGDDYTRRPFSERRAALVDAVGGSGR----SIHVTPATTDLGTAQRWFDEFEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKP  +TYQPDKRVMFKIKH RTADCVVAGYRVHKSG+DAIGSLLLGLYQ+DGQLASV
Sbjct  177  VIAKPLDVTYQPDKRVMFKIKHERTADCVVAGYRVHKSGADAIGSLLLGLYQDDGQLASV  236

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300
            GVIGAFPMAERRRL  ELQPLVT F DHPWNWAAH AG+RTPRKNE+SRWN GKDLSFVP
Sbjct  237  GVIGAFPMAERRRLFAELQPLVTDFADHPWNWAAHEAGERTPRKNEYSRWNAGKDLSFVP  296

Query  301  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL  357
            LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+Y QLE+P+T SL +IVPGL
Sbjct  297  LRPERVVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYEQLEQPVTFSLGEIVPGL  353


>gi|118463802|ref|YP_879648.1| ATP-dependent DNA ligase [Mycobacterium avium 104]
 gi|118165089|gb|ABK65986.1| DNA ligase [Mycobacterium avium 104]
Length=364

 Score =  634 bits (1636),  Expect = 6e-180, Method: Compositional matrix adjust.
 Identities = 308/352 (88%), Positives = 325/352 (93%), Gaps = 4/352 (1%)

Query  6    MPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPELVAAI  65
            MPPVSPMLAKSV AIPP ASYEPKWDGFRSICFRDGD+VELGSRNERPMTRYFPELVAA+
Sbjct  1    MPPVSPMLAKSVGAIPPAASYEPKWDGFRSICFRDGDEVELGSRNERPMTRYFPELVAAV  60

Query  66   RAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLLALGDD  125
            RAELP RCVIDGEI+IATDHGLDFEALQQRIHPAESRVRMLA+ TPASFIAFDLLALGD+
Sbjct  61   RAELPQRCVIDGEIVIATDHGLDFEALQQRIHPAESRVRMLAEATPASFIAFDLLALGDE  120

Query  126  DYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDGVIAKP  185
            DYTGRPF ERRAAL++AV G G     SIHVTPATTD+ TA+RWF EFEGAGLDGV+AKP
Sbjct  121  DYTGRPFRERRAALLEAVGGPGP----SIHVTPATTDLDTARRWFDEFEGAGLDGVVAKP  176

Query  186  PHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASVGVIGA  245
              ITYQPDKRVMFKIKH RTADCVVAGYRVHKSG+DAIGSLLLGLYQ+DGQLASVGVIGA
Sbjct  177  LDITYQPDKRVMFKIKHERTADCVVAGYRVHKSGADAIGSLLLGLYQDDGQLASVGVIGA  236

Query  246  FPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVPLRPER  305
            FPMAERRRL TELQPLVT F+DHPWNWAAH AG+RTPRKNEFSRWN GKDLSFVPLRPER
Sbjct  237  FPMAERRRLFTELQPLVTDFEDHPWNWAAHQAGERTPRKNEFSRWNAGKDLSFVPLRPER  296

Query  306  VVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL  357
            VVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+Y QLE+P+T  L DIVPGL
Sbjct  297  VVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYEQLEQPVTFRLGDIVPGL  348


>gi|296166843|ref|ZP_06849260.1| ATP-dependent DNA ligase [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295897720|gb|EFG77309.1| ATP-dependent DNA ligase [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=356

 Score =  634 bits (1635),  Expect = 7e-180, Method: Compositional matrix adjust.
 Identities = 307/357 (86%), Positives = 326/357 (92%), Gaps = 4/357 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPVSPMLAKSV +IPPDASYEPKWDGFRSICFRD D+VELGSRNERPMTRYFPE
Sbjct  1    MDLPVMPPVSPMLAKSVRSIPPDASYEPKWDGFRSICFRDRDEVELGSRNERPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAA+RAELP RCVIDGEI+IATDHGLDFEALQQRIHPA+SRVRMLA+ TPA+FIAFDLL
Sbjct  61   LVAAVRAELPERCVIDGEIVIATDHGLDFEALQQRIHPADSRVRMLAEATPAAFIAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGDDDYT RPFSERRAALVDA++ SG     S+HVTPATTD+  A+RWF EFEGAGLDG
Sbjct  121  ALGDDDYTRRPFSERRAALVDALSDSGP----SVHVTPATTDVDVARRWFDEFEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKP  +TYQPDKR MFKIKH RTADCVVAGYRVHKSG DAIGSLLLGLYQ+DGQLASV
Sbjct  177  VIAKPLTVTYQPDKRAMFKIKHERTADCVVAGYRVHKSGGDAIGSLLLGLYQDDGQLASV  236

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300
            GVIGAFPMAERRRL  E+QPLVT FDDHPWNWAAH  G+RTPRKNEFSRWN GKDLSFVP
Sbjct  237  GVIGAFPMAERRRLFAEMQPLVTDFDDHPWNWAAHETGERTPRKNEFSRWNAGKDLSFVP  296

Query  301  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL  357
            LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+Y QLE+P+T SL DIVPGL
Sbjct  297  LRPERVVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYEQLEQPVTFSLGDIVPGL  353


>gi|336459741|gb|EGO38661.1| ATP-dependent DNA ligase [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=364

 Score =  634 bits (1635),  Expect = 7e-180, Method: Compositional matrix adjust.
 Identities = 308/352 (88%), Positives = 325/352 (93%), Gaps = 4/352 (1%)

Query  6    MPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPELVAAI  65
            MPPVSPMLAKSV AIPP ASYEPKWDGFRSICFRDGD+VELGSRNERPMTRYFPELVAA+
Sbjct  1    MPPVSPMLAKSVGAIPPAASYEPKWDGFRSICFRDGDEVELGSRNERPMTRYFPELVAAV  60

Query  66   RAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLLALGDD  125
            RAELP RCVIDGEI+IATDHGLDFEALQQRIHPAESRVRMLA+ TPASFIAFDLLALGD+
Sbjct  61   RAELPQRCVIDGEIVIATDHGLDFEALQQRIHPAESRVRMLAEATPASFIAFDLLALGDE  120

Query  126  DYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDGVIAKP  185
            DYTGRPF ERRAAL++AV G G     SIHVTPATTD+ TA+RWF EFEGAGLDGV+AKP
Sbjct  121  DYTGRPFRERRAALLEAVGGPGP----SIHVTPATTDLDTARRWFDEFEGAGLDGVVAKP  176

Query  186  PHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASVGVIGA  245
              ITYQPDKRVMFKIKH RTADCVVAGYRVHKSG+DAIGSLLLGLYQ+DGQLASVGVIGA
Sbjct  177  LDITYQPDKRVMFKIKHERTADCVVAGYRVHKSGADAIGSLLLGLYQDDGQLASVGVIGA  236

Query  246  FPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVPLRPER  305
            FPMAERRRL TELQPLVT F+DHPWNWAAH AG+RTPRKNEFSRWN GKDLSFVPLRPER
Sbjct  237  FPMAERRRLFTELQPLVTDFEDHPWNWAAHQAGERTPRKNEFSRWNAGKDLSFVPLRPER  296

Query  306  VVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL  357
            VVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+Y QLE+P+T  L DIVPGL
Sbjct  297  VVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYEQLEQPVTFRLDDIVPGL  348


>gi|240171065|ref|ZP_04749724.1| ATP-dependent DNA ligase [Mycobacterium kansasii ATCC 12478]
Length=371

 Score =  633 bits (1633),  Expect = 1e-179, Method: Compositional matrix adjust.
 Identities = 311/364 (86%), Positives = 330/364 (91%), Gaps = 7/364 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPVSPMLAKSV  IP DASYEPKWDGFRSICFRDGD+VELGSRNERPMTRYFPE
Sbjct  1    MDLPVMPPVSPMLAKSVKTIPADASYEPKWDGFRSICFRDGDEVELGSRNERPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAAI+AELP RCV+DGEI+IATDHGLDFEALQQRIHPA+SRVRMLA+ TPASFIAFDLL
Sbjct  61   LVAAIKAELPARCVVDGEIVIATDHGLDFEALQQRIHPADSRVRMLAEHTPASFIAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADL----SIHVTPATTDMATAQRWFSEFEGA  176
            ALGDDDYT RPFSERRAALVDA+T SGA +      SIHVTPATTD+ATAQRWF EFEGA
Sbjct  121  ALGDDDYTTRPFSERRAALVDALTVSGAVSGAASGPSIHVTPATTDLATAQRWFDEFEGA  180

Query  177  GLDGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGS---DAIGSLLLGLYQE  233
            GLDGVIAKP  ITYQPDKRVMFKIKH RTADCVVAGYRVHKS      A+GSLLLGLYQ+
Sbjct  181  GLDGVIAKPLTITYQPDKRVMFKIKHERTADCVVAGYRVHKSSGPEDGAVGSLLLGLYQQ  240

Query  234  DGQLASVGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVG  293
            DGQLASVGVIGAFPMA+RRRL  ELQPLVT+FD+HPWNWAAH AG+RTPRKNEFSRWN G
Sbjct  241  DGQLASVGVIGAFPMAQRRRLFDELQPLVTTFDNHPWNWAAHEAGERTPRKNEFSRWNAG  300

Query  294  KDLSFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDI  353
            KDLSFVPLRPERVVEVRYD MEGARFRHTAQFNRWRPDRDPRSC+YAQLE+P++  L DI
Sbjct  301  KDLSFVPLRPERVVEVRYDHMEGARFRHTAQFNRWRPDRDPRSCTYAQLEQPVSFHLDDI  360

Query  354  VPGL  357
            V GL
Sbjct  361  VAGL  364


>gi|254773367|ref|ZP_05214883.1| ATP-dependent DNA ligase [Mycobacterium avium subsp. avium ATCC 
25291]
Length=364

 Score =  630 bits (1626),  Expect = 8e-179, Method: Compositional matrix adjust.
 Identities = 307/352 (88%), Positives = 324/352 (93%), Gaps = 4/352 (1%)

Query  6    MPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPELVAAI  65
            MPPVSPMLAKSV AIPP ASYEPKWDGFRSICFRDGD+VELGSRNERPMTRYFPELVAA+
Sbjct  1    MPPVSPMLAKSVGAIPPAASYEPKWDGFRSICFRDGDEVELGSRNERPMTRYFPELVAAV  60

Query  66   RAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLLALGDD  125
            RAELP RCVIDGEI+IATDHGLDFEALQQRIHPAESRVRMLA+ TPASFIAFDLLALGD+
Sbjct  61   RAELPQRCVIDGEIVIATDHGLDFEALQQRIHPAESRVRMLAEATPASFIAFDLLALGDE  120

Query  126  DYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDGVIAKP  185
            DYTGRPF ERRAAL++AV G G     SIHVTPATTD+ TA+RWF EFEGAGLDGV+AKP
Sbjct  121  DYTGRPFRERRAALLEAVGGPGP----SIHVTPATTDLDTARRWFDEFEGAGLDGVVAKP  176

Query  186  PHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASVGVIGA  245
              ITYQPDKRVMFKIK  RTADCVVAGYRVHKSG+DAIGSLLLGLYQ+DGQLASVGVIGA
Sbjct  177  LDITYQPDKRVMFKIKDERTADCVVAGYRVHKSGADAIGSLLLGLYQDDGQLASVGVIGA  236

Query  246  FPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVPLRPER  305
            FPMAERRRL TELQPLVT F+DHPWNWAAH AG+RTPRKNEFSRWN GKDLSFVPLRPER
Sbjct  237  FPMAERRRLFTELQPLVTDFEDHPWNWAAHQAGERTPRKNEFSRWNAGKDLSFVPLRPER  296

Query  306  VVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL  357
            VVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+Y QLE+P+T  L DIVPGL
Sbjct  297  VVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYEQLEQPVTFRLDDIVPGL  348


>gi|342859960|ref|ZP_08716612.1| ATP-dependent DNA ligase [Mycobacterium colombiense CECT 3035]
 gi|342132338|gb|EGT85567.1| ATP-dependent DNA ligase [Mycobacterium colombiense CECT 3035]
Length=356

 Score =  629 bits (1623),  Expect = 2e-178, Method: Compositional matrix adjust.
 Identities = 306/357 (86%), Positives = 324/357 (91%), Gaps = 4/357 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPVSPMLAKSV +IPPDASYEPKWDGFRSICFRD D+VELGSRNERPMTRYFPE
Sbjct  1    MDLPVMPPVSPMLAKSVRSIPPDASYEPKWDGFRSICFRDRDEVELGSRNERPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAA+RAELP RCVIDGEI+IATDHGLDFEALQQRIHPA+SRVRMLA+ TPASFIAFDLL
Sbjct  61   LVAAVRAELPARCVIDGEIVIATDHGLDFEALQQRIHPADSRVRMLAETTPASFIAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGDDDYT RPF ERRA LV+A+ GSG     SIHVTPATTD+ TA  WF EFEGAGLDG
Sbjct  121  ALGDDDYTRRPFRERRATLVEALAGSGP----SIHVTPATTDLGTAHSWFGEFEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKP  ITYQPDKR+MFKIKH RTADCVVAGYRVHKSG+ AIGSLLLGLYQ+DGQLASV
Sbjct  177  VIAKPLDITYQPDKRIMFKIKHERTADCVVAGYRVHKSGAGAIGSLLLGLYQDDGQLASV  236

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300
            GVIGAFPMAERRRL  ELQPLVT F+ HPWNWAAH AG+RTPRKNEFSRWN GKDLSFVP
Sbjct  237  GVIGAFPMAERRRLFDELQPLVTDFEHHPWNWAAHEAGERTPRKNEFSRWNAGKDLSFVP  296

Query  301  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL  357
            LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+Y QLE+P+T SL +IVPGL
Sbjct  297  LRPERVVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYEQLEQPVTFSLGEIVPGL  353


>gi|183985234|ref|YP_001853525.1| ATP-dependent DNA ligase LigC [Mycobacterium marinum M]
 gi|183178560|gb|ACC43670.1| ATP-dependent DNA ligase LigC [Mycobacterium marinum M]
Length=358

 Score =  627 bits (1616),  Expect = 1e-177, Method: Compositional matrix adjust.
 Identities = 306/357 (86%), Positives = 325/357 (92%), Gaps = 5/357 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPP+SPMLAK+V  IP DASYEPKWDGFRSICFRD D+VELGSRNERP+TRYFPE
Sbjct  1    MDLPVMPPISPMLAKAVKTIPADASYEPKWDGFRSICFRDNDEVELGSRNERPLTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAA+RAELP RCV+DGEI+IAT HGLDFEALQQRIHPA+SRVRMLA+ TPASFIAFDLL
Sbjct  61   LVAAVRAELPRRCVLDGEIVIATGHGLDFEALQQRIHPADSRVRMLAEHTPASFIAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGDDDYT RPF ERRAALV+AV GSG     SIHVTPATTD ATA+RWF EFEGAGLDG
Sbjct  121  ALGDDDYTTRPFVERRAALVEAV-GSGP----SIHVTPATTDQATARRWFEEFEGAGLDG  175

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKP  +TYQPDKRVMFKIKH RTADCV+AGYR+HKSG D IGSLLLGLYQ+DGQLASV
Sbjct  176  VIAKPLAVTYQPDKRVMFKIKHERTADCVLAGYRLHKSGGDVIGSLLLGLYQDDGQLASV  235

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300
            GVIGAFPMAERRRL TELQ LVTSFDDHPWNWAAH +G+RTPRKNEFSRWN GKDLSFVP
Sbjct  236  GVIGAFPMAERRRLFTELQELVTSFDDHPWNWAAHQSGERTPRKNEFSRWNAGKDLSFVP  295

Query  301  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL  357
            LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+YAQLE+PLT SL DIV GL
Sbjct  296  LRPERVVEVRYDHMEGPRFRHTAQFNRWRPDRDPRSCTYAQLEQPLTFSLDDIVAGL  352


>gi|118619483|ref|YP_907815.1| ATP-dependent DNA ligase [Mycobacterium ulcerans Agy99]
 gi|118571593|gb|ABL06344.1| ATP-dependent DNA ligase LigC [Mycobacterium ulcerans Agy99]
Length=358

 Score =  614 bits (1583),  Expect = 7e-174, Method: Compositional matrix adjust.
 Identities = 300/357 (85%), Positives = 321/357 (90%), Gaps = 5/357 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPP+SPMLAK+V  IP DASYEPKWDGFRSICFRD D+VELGSRNERP+TRYFPE
Sbjct  1    MDLPVMPPISPMLAKAVKTIPADASYEPKWDGFRSICFRDNDEVELGSRNERPLTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAA+RAELP RCV+DGEI+IAT HGLDFEALQQRIH A+SRVRMLA+  PASFIAFDLL
Sbjct  61   LVAAVRAELPRRCVLDGEIVIATGHGLDFEALQQRIHHADSRVRMLAEHIPASFIAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGDDDYT RPF ERRAALV+AV GSG     SIHVTPATTD ATA+RWF EFEGAGLDG
Sbjct  121  ALGDDDYTTRPFVERRAALVEAV-GSGP----SIHVTPATTDQATARRWFEEFEGAGLDG  175

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKP  +TYQPDK VMFK+KH RTADCV+AGYR+HKSG D IGSLLLGLYQ+DGQLASV
Sbjct  176  VIAKPLAVTYQPDKCVMFKLKHERTADCVLAGYRLHKSGGDVIGSLLLGLYQDDGQLASV  235

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300
            GVIGAFPMAERRRL TELQ LVTSFDDHPWNWAAH +G+RTPRKNEFSRWN GKDLSFVP
Sbjct  236  GVIGAFPMAERRRLFTELQELVTSFDDHPWNWAAHQSGERTPRKNEFSRWNAGKDLSFVP  295

Query  301  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL  357
            LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+YAQLE+PL  +L DIV GL
Sbjct  296  LRPERVVEVRYDHMEGPRFRHTAQFNRWRPDRDPRSCTYAQLEQPLMFNLDDIVAGL  352


>gi|169627384|ref|YP_001701033.1| ATP-dependent DNA ligase [Mycobacterium abscessus ATCC 19977]
 gi|169239351|emb|CAM60379.1| Probable DNA ligase LigC [Mycobacterium abscessus]
Length=343

 Score =  577 bits (1486),  Expect = 1e-162, Method: Compositional matrix adjust.
 Identities = 277/346 (81%), Positives = 306/346 (89%), Gaps = 4/346 (1%)

Query  12   MLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPELVAAIRAELPH  71
            MLAK V  IP  ASYEPKWDGFRSI FRDGD+VELGSRNE+P+TRYFPELVAA+ AELP 
Sbjct  1    MLAKPVAKIPDGASYEPKWDGFRSIVFRDGDEVELGSRNEKPLTRYFPELVAAVLAELPP  60

Query  72   RCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLLALGDDDYTGRP  131
            RCV+DGEI+IAT+ GLDFEALQQRIHPA+SRVR+LA++TP+SFIAFDLLALGD+DYTGRP
Sbjct  61   RCVVDGEIVIATEAGLDFEALQQRIHPADSRVRLLAEQTPSSFIAFDLLALGDEDYTGRP  120

Query  132  FSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDGVIAKPPHITYQ  191
            FSERRAAL +A++ +G     SIH+TPATTD A AQRWF EFEGAG DG+IAKP  I YQ
Sbjct  121  FSERRAALTEALSSAGT----SIHLTPATTDQALAQRWFEEFEGAGTDGLIAKPLAIAYQ  176

Query  192  PDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASVGVIGAFPMAER  251
            PDKRVMFKIK  RTADCVVAGYRVHKSG DAIGSLLLGLYQEDG LASVGVIGAFPMAER
Sbjct  177  PDKRVMFKIKPERTADCVVAGYRVHKSGDDAIGSLLLGLYQEDGILASVGVIGAFPMAER  236

Query  252  RRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVPLRPERVVEVRY  311
            +RL  ELQPL+   ++HPWNWAAH AG+RTP+KN  SRWN GKDLSFVPLRPERVVEVRY
Sbjct  237  KRLFQELQPLIIPLENHPWNWAAHEAGERTPQKNAGSRWNAGKDLSFVPLRPERVVEVRY  296

Query  312  DRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL  357
            D MEG RFRHTAQFNRWRPDRDPRSC+Y QLE+P+T SL+DIVPGL
Sbjct  297  DHMEGVRFRHTAQFNRWRPDRDPRSCTYEQLEQPITFSLNDIVPGL  342


>gi|120406492|ref|YP_956321.1| ATP-dependent DNA ligase [Mycobacterium vanbaalenii PYR-1]
 gi|119959310|gb|ABM16315.1| ATP dependent DNA ligase [Mycobacterium vanbaalenii PYR-1]
Length=360

 Score =  561 bits (1445),  Expect = 8e-158, Method: Compositional matrix adjust.
 Identities = 278/357 (78%), Positives = 301/357 (85%), Gaps = 4/357 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            MQLPVMPPVSPML+KSV  IP  ASYEPKWDGFRSI FRDG++VELGSRNERPMTRYFPE
Sbjct  1    MQLPVMPPVSPMLSKSVDTIPDGASYEPKWDGFRSILFRDGNEVELGSRNERPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LV A RAELP RCV+DGEI++AT  GLDFEALQ R+HPA SRVRMLA++TPASFIAFDLL
Sbjct  61   LVEAARAELPPRCVVDGEIVVATGGGLDFEALQLRLHPAASRVRMLAEKTPASFIAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            AL D DYT RPF+ERRAALV A+ G G     + HVTPAT D+ATA+RWF EFEGAGLDG
Sbjct  121  ALDDTDYTARPFAERRAALVGALAGCGP----TFHVTPATLDVATARRWFDEFEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKP    Y PDKRVMFKIKH RTADCVVAGYR+HKSG DA+GSLLLGLY +DG LASV
Sbjct  177  VIAKPLDGHYLPDKRVMFKIKHQRTADCVVAGYRLHKSGPDAVGSLLLGLYDDDGSLASV  236

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300
            GV+GAFPMA RR L+TELQPLVT+FD HPWNWAA V      R    SRWN GKDLSFVP
Sbjct  237  GVVGAFPMARRRELVTELQPLVTTFDGHPWNWAAQVDPDTVRRYGGGSRWNAGKDLSFVP  296

Query  301  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL  357
            LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDP SC++ QL+RPLT SL DIVPGL
Sbjct  297  LRPERVVEVRYDHMEGQRFRHTAQFNRWRPDRDPLSCTFDQLDRPLTFSLDDIVPGL  353


>gi|126437883|ref|YP_001073574.1| ATP-dependent DNA ligase [Mycobacterium sp. JLS]
 gi|126237683|gb|ABO01084.1| ATP dependent DNA ligase [Mycobacterium sp. JLS]
Length=353

 Score =  555 bits (1429),  Expect = 6e-156, Method: Compositional matrix adjust.
 Identities = 275/357 (78%), Positives = 297/357 (84%), Gaps = 5/357 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            MQLPV PP++PML+K+V  IP  ASYEPKWDGFRSI FRDGD+VELGSRNERPMTRYFPE
Sbjct  1    MQLPVSPPIAPMLSKAVADIPLGASYEPKWDGFRSIVFRDGDEVELGSRNERPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LV A RAELP RCVIDGEI+IAT  GLDFEALQ R+HPA SRVRMLA++TPASFIAFDLL
Sbjct  61   LVEAARAELPARCVIDGEIVIATADGLDFEALQLRLHPAASRVRMLAEKTPASFIAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGD DYT RPF ERRA L   +TG       + HVTPAT D+ TA+RWF EFEGAGLDG
Sbjct  121  ALGDTDYTSRPFVERRAELERVLTGGH-----TFHVTPATVDVDTARRWFHEFEGAGLDG  175

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKP    Y PDKRVMFK+KH RTADCVVAGYR+HKSG DAIGSLLLGLY +DG+LASV
Sbjct  176  VIAKPLDGPYLPDKRVMFKVKHQRTADCVVAGYRLHKSGDDAIGSLLLGLYTDDGELASV  235

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300
            GVIGAFPMA RR L  ELQPLVT+FD+HPWNWAAH       R    SRWN GKDLSFVP
Sbjct  236  GVIGAFPMARRRALFAELQPLVTTFDEHPWNWAAHADPDVVRRYGGGSRWNAGKDLSFVP  295

Query  301  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL  357
            LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+YAQLE+P+T  L DIVPGL
Sbjct  296  LRPERVVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYAQLEQPVTFRLGDIVPGL  352


>gi|108801902|ref|YP_642099.1| ATP-dependent DNA ligase [Mycobacterium sp. MCS]
 gi|119871054|ref|YP_941006.1| ATP-dependent DNA ligase [Mycobacterium sp. KMS]
 gi|108772321|gb|ABG11043.1| ATP dependent DNA ligase [Mycobacterium sp. MCS]
 gi|119697143|gb|ABL94216.1| ATP dependent DNA ligase [Mycobacterium sp. KMS]
Length=353

 Score =  555 bits (1429),  Expect = 6e-156, Method: Compositional matrix adjust.
 Identities = 275/357 (78%), Positives = 297/357 (84%), Gaps = 5/357 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            MQLPV PP++PML+K+VT IP  ASYEPKWDGFRSI FRDGD+VELGSRNERPMTRYFPE
Sbjct  1    MQLPVSPPIAPMLSKAVTDIPLGASYEPKWDGFRSIVFRDGDEVELGSRNERPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LV A RAELP RCVIDGEI+IAT  GLDFEALQ R+HPA SRVRMLA++TPASFIAFDLL
Sbjct  61   LVEAARAELPARCVIDGEIVIATADGLDFEALQLRLHPAASRVRMLAEKTPASFIAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGD DYT RPF ERRA L   +TG       + HVTPAT D+ TA+RWF EFEGAGLDG
Sbjct  121  ALGDTDYTSRPFVERRAELERVLTGGH-----TFHVTPATVDVDTARRWFHEFEGAGLDG  175

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKP    Y PDKRVMFK+KH RTADCVVAGYR+HKSG DAIGSLLLGLY +DG+LASV
Sbjct  176  VIAKPLDGPYLPDKRVMFKVKHQRTADCVVAGYRLHKSGDDAIGSLLLGLYTDDGELASV  235

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300
            GVIGAFPMA RR L  ELQPLV +FD+HPWNWAAH       R    SRWN GKDLSFVP
Sbjct  236  GVIGAFPMARRRALFAELQPLVATFDEHPWNWAAHADPDVVRRYGGGSRWNAGKDLSFVP  295

Query  301  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL  357
            LRPERVVEVRYD MEG RFRHTAQFNRWRPDRDPRSC+YAQLE+P+T  L DIVPGL
Sbjct  296  LRPERVVEVRYDHMEGRRFRHTAQFNRWRPDRDPRSCTYAQLEQPVTFRLGDIVPGL  352


>gi|145221846|ref|YP_001132524.1| ATP-dependent DNA ligase [Mycobacterium gilvum PYR-GCK]
 gi|145214332|gb|ABP43736.1| ATP dependent DNA ligase [Mycobacterium gilvum PYR-GCK]
Length=366

 Score =  551 bits (1420),  Expect = 5e-155, Method: Compositional matrix adjust.
 Identities = 272/357 (77%), Positives = 297/357 (84%), Gaps = 4/357 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M+LPVMPP+SPML+KSV  IP  ASYEPKWDGFRSI FRDGD++E GSRNERPMTRYFPE
Sbjct  4    MRLPVMPPLSPMLSKSVQQIPDGASYEPKWDGFRSIVFRDGDEIEFGSRNERPMTRYFPE  63

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAA R+ELP RCV+DGEI+IAT  GLDFEALQ R+HPA SRV MLA++TPASFIAFDLL
Sbjct  64   LVAAARSELPPRCVVDGEIVIATAGGLDFEALQLRLHPAASRVTMLAEKTPASFIAFDLL  123

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGD D TGRPF+ERRAALVDA+ G+G     + HVTPAT D+A A RWF EFEGAGLDG
Sbjct  124  ALGDTDLTGRPFTERRAALVDALAGAGP----TFHVTPATRDIALATRWFDEFEGAGLDG  179

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKP    Y PDKR MFKIKH RTADCVVAGYR+HKSG DA+GSLLLGLY  DG LASV
Sbjct  180  VIAKPVDGVYLPDKRTMFKIKHRRTADCVVAGYRLHKSGDDAVGSLLLGLYDSDGALASV  239

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300
            GVIGAFPMA RR LL ELQPLVT+FD+HPWNWAAH       R    SRWN GKDLSFVP
Sbjct  240  GVIGAFPMARRRALLAELQPLVTTFDEHPWNWAAHADPDVVRRHGGGSRWNAGKDLSFVP  299

Query  301  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL  357
            LRPERVVEVRYD MEG RFRH AQFNRWRPDR PRSC++ QLE+P++ SL DI PGL
Sbjct  300  LRPERVVEVRYDHMEGRRFRHMAQFNRWRPDRTPRSCTFDQLEQPVSFSLDDIGPGL  356


>gi|258651070|ref|YP_003200226.1| ATP-dependent DNA ligase [Nakamurella multipartita DSM 44233]
 gi|258554295|gb|ACV77237.1| ATP dependent DNA ligase [Nakamurella multipartita DSM 44233]
Length=354

 Score =  544 bits (1401),  Expect = 9e-153, Method: Compositional matrix adjust.
 Identities = 264/356 (75%), Positives = 299/356 (84%), Gaps = 6/356 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPP-DASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFP  59
            MQLPVMPPV+PMLAKSV  IP  + SYEPKWDGFRSI FRDGD+VE+GSRNE+PMTRYFP
Sbjct  1    MQLPVMPPVAPMLAKSVPDIPTGELSYEPKWDGFRSIVFRDGDEVEIGSRNEKPMTRYFP  60

Query  60   ELVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDL  119
            ELV AI+A LP RCVIDGEI++     L+FE LQQRIHPA SRVRMLA++TPASF+ FDL
Sbjct  61   ELVEAIKANLPPRCVIDGEIVVIVGDRLEFEVLQQRIHPAASRVRMLAEQTPASFVGFDL  120

Query  120  LALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLD  179
            LALGD DYTGRPF+ERRAAL  A+ G+ A     +H+TPAT D A A  WF +FEGAGLD
Sbjct  121  LALGDTDYTGRPFAERRAALEQAMAGAAA----PVHLTPATRDPALAAEWFEQFEGAGLD  176

Query  180  GVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLAS  239
            GV+AKP   TYQPDKR MFKIKH RTADCVVAGYRVHKSG D+IGSLLLGLY + G LAS
Sbjct  177  GVVAKPLTGTYQPDKRTMFKIKHQRTADCVVAGYRVHKSGPDSIGSLLLGLYNDAGDLAS  236

Query  240  VGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAA-HVAGQRTPRKNEFSRWNVGKDLSF  298
            VGVIGAFP A R++L TELQPLVT+FD+HPWNWA    +G RTPR +E+SRWNVGKDLSF
Sbjct  237  VGVIGAFPAARRKQLFTELQPLVTTFDEHPWNWAKPDESGARTPRSSEYSRWNVGKDLSF  296

Query  299  VPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV  354
            +PLRPERVVEVRY+ MEG RFRHTAQFNRWRPDRDPRSC+Y QLE P++  L+DI+
Sbjct  297  IPLRPERVVEVRYEHMEGTRFRHTAQFNRWRPDRDPRSCTYEQLEEPVSYDLADIL  352


>gi|118472839|ref|YP_890521.1| ATP-dependent DNA ligase [Mycobacterium smegmatis str. MC2 155]
 gi|118174126|gb|ABK75022.1| DNA ligase [Mycobacterium smegmatis str. MC2 155]
Length=354

 Score =  534 bits (1376),  Expect = 8e-150, Method: Compositional matrix adjust.
 Identities = 264/347 (77%), Positives = 289/347 (84%), Gaps = 6/347 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPV+PPVSPML+KSV  IPP  SYEPKWDGFRSI FRDG +VELGSR ERPMTRYFPE
Sbjct  1    MDLPVLPPVSPMLSKSVNQIPPGMSYEPKWDGFRSILFRDGAEVELGSRKERPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAA   ELP RCVIDGEI++  D+ LDFEALQ R+HPA SRV MLA++TPA+FIAFDLL
Sbjct  61   LVAAALTELPDRCVIDGEIVLPADNHLDFEALQLRLHPAASRVAMLAEQTPAAFIAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGDDDYTGRPFSERRAAL  A+    ADA  + H+TPATTD+ TAQRWF EFEGAGLDG
Sbjct  121  ALGDDDYTGRPFSERRAALETAL----ADAGPTFHLTPATTDLPTAQRWFHEFEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKP  +TYQPDKRVMFK+KH RTADCVVAGYR+HKSG+DA+GSLLLGLY +DG LASV
Sbjct  177  VIAKPLDLTYQPDKRVMFKVKHQRTADCVVAGYRLHKSGADAVGSLLLGLYDDDGSLASV  236

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAG--QRTPRKNEFSRWNVGKDLSF  298
            GVIGAFPMA RR L TELQ LV  FD HPWNWAA  A   +   R    SRWN GKDLSF
Sbjct  237  GVIGAFPMATRRALFTELQTLVADFDHHPWNWAAQAAADPELARRYGGGSRWNAGKDLSF  296

Query  299  VPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERP  345
            VPLRPER+VEVRYD MEG RFRHTAQFNRWRPDRD RSC++AQL+ P
Sbjct  297  VPLRPERLVEVRYDHMEGRRFRHTAQFNRWRPDRDARSCTFAQLDSP  343


>gi|315446417|ref|YP_004079296.1| ATP-dependent DNA ligase [Mycobacterium sp. Spyr1]
 gi|315264720|gb|ADU01462.1| ATP-dependent DNA ligase [Mycobacterium sp. Spyr1]
Length=366

 Score =  531 bits (1369),  Expect = 5e-149, Method: Compositional matrix adjust.
 Identities = 270/357 (76%), Positives = 295/357 (83%), Gaps = 4/357 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M+LPVMPP+SPML+KSV  IP  ASYEPKWDGFRSI FRDGD++E GSRNERPMTRYFPE
Sbjct  4    MRLPVMPPLSPMLSKSVQQIPDGASYEPKWDGFRSIVFRDGDEIEFGSRNERPMTRYFPE  63

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAA R+ELP RCV+DGEI+IAT   LDFEALQ R+HPA SRV MLA++TPASFIAFDLL
Sbjct  64   LVAAARSELPPRCVVDGEIVIATAGRLDFEALQLRLHPAASRVTMLAEKTPASFIAFDLL  123

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGD D TGRPF+ERRAALVDA+  +G     + HVTPAT D+A A RWF EFEGAGLDG
Sbjct  124  ALGDTDLTGRPFTERRAALVDALADAGP----TFHVTPATRDIALATRWFDEFEGAGLDG  179

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKP    Y PDKR MFKIKH RTADCVVAGYR+HKSG DA+GSLLLGLY  DG LASV
Sbjct  180  VIAKPVDGVYLPDKRTMFKIKHRRTADCVVAGYRLHKSGDDAVGSLLLGLYDSDGALASV  239

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300
            GVIGAFPMA RR LL ELQPLVT+FD+HPWNWAAH       R    SRWN GKDLSFVP
Sbjct  240  GVIGAFPMARRRALLAELQPLVTTFDEHPWNWAAHADPDVVRRHGGGSRWNAGKDLSFVP  299

Query  301  LRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL  357
            LRPERVVEVRYD MEG RFRH AQFNRWRPDR PRSC++ QLE+P++ SL DI PGL
Sbjct  300  LRPERVVEVRYDHMEGRRFRHMAQFNRWRPDRTPRSCTFDQLEQPVSFSLDDIGPGL  356


>gi|336117096|ref|YP_004571863.1| ATP-dependent DNA ligase LigC [Microlunatus phosphovorus NM-1]
 gi|334684875|dbj|BAK34460.1| ATP-dependent DNA ligase LigC [Microlunatus phosphovorus NM-1]
Length=363

 Score =  526 bits (1355),  Expect = 2e-147, Method: Compositional matrix adjust.
 Identities = 253/355 (72%), Positives = 289/355 (82%), Gaps = 5/355 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPP-DASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFP  59
            + LPVMPPV PMLAKSV  IP  D SYEPKWDGFRSI FRDGD+VE+GSRNERPMTRYFP
Sbjct  4    VDLPVMPPVKPMLAKSVPTIPTGDLSYEPKWDGFRSIVFRDGDEVEIGSRNERPMTRYFP  63

Query  60   ELVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDL  119
            ELV A+RA LP +CV+DGEI++     L+FE LQQRIHPA SR+++L+++TPA+F+AFDL
Sbjct  64   ELVEALRANLPQKCVLDGEIVVVRGDRLEFEVLQQRIHPAASRIKLLSEQTPATFVAFDL  123

Query  120  LALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLD  179
            LALGD+DY  RPF+ERRAAL  A+    A A+  IHVTP T D A AQ WF +FEGAGLD
Sbjct  124  LALGDEDYLQRPFAERRAALEQAL----ASAEAPIHVTPTTRDPAIAQNWFEQFEGAGLD  179

Query  180  GVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLAS  239
            GV+AKP   TYQPDKR MFKIKH RTADCVVAGYRVHKSG D IGSLLLGLY +DG L S
Sbjct  180  GVVAKPLAGTYQPDKRTMFKIKHQRTADCVVAGYRVHKSGPDTIGSLLLGLYNDDGVLTS  239

Query  240  VGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFV  299
            VGVIGAFP A R+ L TELQPLVT+FDDHPW WA    G RTP+ +  SRWN GKDLSFV
Sbjct  240  VGVIGAFPAARRKELFTELQPLVTTFDDHPWAWAKEEVGTRTPQHSAGSRWNNGKDLSFV  299

Query  300  PLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV  354
            PLRP+ VVEVRY+ MEG RFRHTAQFNRWRPDR+PRSC+Y QLE P++  L+DI+
Sbjct  300  PLRPDLVVEVRYEHMEGVRFRHTAQFNRWRPDREPRSCTYEQLEEPVSYDLADIL  354


>gi|126437855|ref|YP_001073546.1| ATP-dependent DNA ligase [Mycobacterium sp. JLS]
 gi|126237655|gb|ABO01056.1| ATP dependent DNA ligase [Mycobacterium sp. JLS]
Length=374

 Score =  523 bits (1346),  Expect = 3e-146, Method: Compositional matrix adjust.
 Identities = 259/312 (84%), Positives = 280/312 (90%), Gaps = 4/312 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M+LPVMPPVSPMLAKSV  IPPDASYEPKWDGFRSICFRDG++VELGSR+ERP+TRYFPE
Sbjct  1    MKLPVMPPVSPMLAKSVPTIPPDASYEPKWDGFRSICFRDGEEVELGSRHERPLTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAAI  ELP RCVIDGEIIIATDHGLDFEALQQRIHPA+SRVRMLA +TPASF+AFDLL
Sbjct  61   LVAAITTELPERCVIDGEIIIATDHGLDFEALQQRIHPADSRVRMLAKQTPASFVAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGDDDYT RPF+ERRAALV A+  SG     S+HVTPATTD+ TA RWF EFEGAGLDG
Sbjct  121  ALGDDDYTKRPFAERRAALVAALADSGP----SVHVTPATTDLTTAHRWFEEFEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            V+AKP  +TYQPDKRVMFKIKH RTADCVVAGYRVHKS  DAIGSLLLGLY +DG LASV
Sbjct  177  VVAKPLTVTYQPDKRVMFKIKHQRTADCVVAGYRVHKSSQDAIGSLLLGLYTDDGTLASV  236

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVP  300
            GVIGAFPM +RR+L TE+QP +T+ DDHPWNWAAH AG+RTPRKNE SRWN GKDLSFVP
Sbjct  237  GVIGAFPMTKRRQLFTEMQPSITAVDDHPWNWAAHEAGERTPRKNETSRWNAGKDLSFVP  296

Query  301  LRPERVVEVRYD  312
            LRPERVVEVRYD
Sbjct  297  LRPERVVEVRYD  308


>gi|220914592|ref|YP_002489901.1| ATP-dependent DNA ligase [Arthrobacter chlorophenolicus A6]
 gi|219861470|gb|ACL41812.1| ATP dependent DNA ligase [Arthrobacter chlorophenolicus A6]
Length=357

 Score =  506 bits (1303),  Expect = 2e-141, Method: Compositional matrix adjust.
 Identities = 247/356 (70%), Positives = 283/356 (80%), Gaps = 11/356 (3%)

Query  6    MPPVSPMLAKSVTAIP-----PDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            MPPV PMLAKSV+ I       D SYEPKWDGFRSI FRDGD +E+GSRNE+PMTRYFPE
Sbjct  1    MPPVPPMLAKSVSGIDGIPKGSDLSYEPKWDGFRSIIFRDGDDLEIGSRNEKPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHG--LDFEALQQRIHPAESRVRMLADRTPASFIAFD  118
            LV A++  LP RCV+DGEII+    G  LDF+ LQQRIHPA SRV++L+++TPASF+AFD
Sbjct  61   LVVALKDNLPERCVVDGEIILIGASGDRLDFDTLQQRIHPAASRVKLLSEQTPASFVAFD  120

Query  119  LLALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGL  178
            LLALGDDDYTGRPF+ERRAAL  A+  S A     +H+T ATTD  TA +WF +FEGAGL
Sbjct  121  LLALGDDDYTGRPFAERRAALEKALAASEA----PVHLTAATTDKDTAGQWFEQFEGAGL  176

Query  179  DGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLA  238
            DG++AK     Y+PDKR MFKIKH RTADCVVAGYR+HKSG D IGSLLLGLY++DG LA
Sbjct  177  DGLVAKRLDGPYEPDKRTMFKIKHERTADCVVAGYRLHKSGPDVIGSLLLGLYKDDGGLA  236

Query  239  SVGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSF  298
            SVGVIGAFPM  R+ L  ELQPLVT FD+HPW WA    G+RTPR  E SRW+ GKDLSF
Sbjct  237  SVGVIGAFPMKRRQELFQELQPLVTDFDNHPWAWAKQEEGERTPRNAEGSRWSAGKDLSF  296

Query  299  VPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV  354
            VPLRPE VVEVRYD MEG RFRHTAQFNRWRPDRDP SC+YAQLE P+   L+ ++
Sbjct  297  VPLRPELVVEVRYDHMEGERFRHTAQFNRWRPDRDPESCTYAQLEEPVNFDLASVL  352


>gi|331698479|ref|YP_004334718.1| ATP dependent DNA ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326953168|gb|AEA26865.1| ATP dependent DNA ligase [Pseudonocardia dioxanivorans CB1190]
Length=356

 Score =  498 bits (1281),  Expect = 7e-139, Method: Compositional matrix adjust.
 Identities = 258/356 (73%), Positives = 288/356 (81%), Gaps = 6/356 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPV PMLAK V AIP    YEPKWDGFRSI FRDGD+VE+GSRNERPMTRYFPE
Sbjct  1    MDLPVMPPVKPMLAKPVAAIPDGRHYEPKWDGFRSIIFRDGDEVEIGSRNERPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIA--TDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFD  118
            +V A++A  P R VIDGEI++     + LDFEALQQRIHPA+SRVR+LA++TPASF+AFD
Sbjct  61   VVEAVKANFPERAVIDGEIVVVDRERNRLDFEALQQRIHPADSRVRLLAEQTPASFVAFD  120

Query  119  LLALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGL  178
            LLALGDDD TG    ERRA L + V G   DA   +H+TPAT D   A++WF EFEGAGL
Sbjct  121  LLALGDDDLTGSRLDERRATL-ERVLG---DAKPPVHITPATQDPVLAEQWFREFEGAGL  176

Query  179  DGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLA  238
            DG+IAKP  +TYQPDKRVM KIKH RT DCVVAGYRVHKSG DAIGSLLLGL+ E G LA
Sbjct  177  DGLIAKPLDLTYQPDKRVMAKIKHERTCDCVVAGYRVHKSGPDAIGSLLLGLFDERGVLA  236

Query  239  SVGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSF  298
            SVGV+GAFPMA RR L TELQPLVT F+ HPWNWAAH  G+RTPRKNE SRWN GKDLSF
Sbjct  237  SVGVVGAFPMARRRALFTELQPLVTEFEGHPWNWAAHELGERTPRKNEGSRWNAGKDLSF  296

Query  299  VPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV  354
            VPLRPERVVEVRYD MEG RFRHTAQF RWR DR P SC+Y QLE+P++  L D++
Sbjct  297  VPLRPERVVEVRYDYMEGLRFRHTAQFVRWRDDRTPESCTYEQLEQPVSFDLGDVL  352


>gi|325001866|ref|ZP_08122978.1| ATP-dependent DNA ligase [Pseudonocardia sp. P1]
Length=356

 Score =  496 bits (1277),  Expect = 2e-138, Method: Compositional matrix adjust.
 Identities = 253/358 (71%), Positives = 286/358 (80%), Gaps = 6/358 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPV PMLAK  ++IP    YEPKWDGFRSI FRDGD VE+GSRNERPMTRYFPE
Sbjct  1    MDLPVMPPVKPMLAKPASSIPDGRLYEPKWDGFRSIVFRDGDDVEIGSRNERPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIA--TDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFD  118
            +V A+RA  P R VIDGEI++A   ++ LDFEALQQRIHPA SRV +L+  TPASF+AFD
Sbjct  61   VVEAVRANFPDRAVIDGEIVVADPANNRLDFEALQQRIHPAASRVTLLSTETPASFVAFD  120

Query  119  LLALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGL  178
            LLALG DD TG PF+ERR  L  A+    ADA   +H+TP T D  TA+RWF  FEGAGL
Sbjct  121  LLALGADDLTGLPFAERRDLLESAL----ADAAPPVHLTPVTDDTGTARRWFDRFEGAGL  176

Query  179  DGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLA  238
            DG+IAK P  TYQPDKRVM KIKH RTADCVVAGYRVHKSG DA+GSLLLGL+ E G L 
Sbjct  177  DGLIAKDPAGTYQPDKRVMTKIKHERTADCVVAGYRVHKSGPDAVGSLLLGLHDERGVLV  236

Query  239  SVGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSF  298
            SVGV+GAFPMA RR L+TELQPLVT FD+HPW WA  + G+RTPRK+E SRWN GKDLSF
Sbjct  237  SVGVVGAFPMARRRELMTELQPLVTGFDEHPWAWAKQLEGERTPRKSETSRWNAGKDLSF  296

Query  299  VPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPG  356
            VPLRPERVVEVRYD MEGARFRHT QF RWRPDR P SC+Y QL+RP+   L++++ G
Sbjct  297  VPLRPERVVEVRYDYMEGARFRHTTQFVRWRPDRAPESCTYEQLDRPVGFDLAEVLAG  354


>gi|325965207|ref|YP_004243113.1| ATP-dependent DNA ligase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323471294|gb|ADX74979.1| ATP-dependent DNA ligase [Arthrobacter phenanthrenivorans Sphe3]
Length=358

 Score =  494 bits (1272),  Expect = 8e-138, Method: Compositional matrix adjust.
 Identities = 243/344 (71%), Positives = 276/344 (81%), Gaps = 7/344 (2%)

Query  14   AKSVTAIPP-DASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPELVAAIRAELPHR  72
            AK+V+ IP  D SYEPKWDGFRSI FRDGD VE+GSRNE+PMTRYFPELV A++  LP R
Sbjct  14   AKAVSGIPEGDLSYEPKWDGFRSIIFRDGDDVEIGSRNEKPMTRYFPELVEALKENLPPR  73

Query  73   CVIDGEIIIATDHG--LDFEALQQRIHPAESRVRMLADRTPASFIAFDLLALGDDDYTGR  130
            CV+DGEI++    G  LDF+ALQQRIHPA SRVR+LA++TPASF+AFDLLALGDD Y  R
Sbjct  74   CVVDGEIVLIGPSGDRLDFDALQQRIHPAASRVRLLAEQTPASFVAFDLLALGDDSYMDR  133

Query  131  PFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDGVIAKPPHITY  190
            PF+ERRAAL  A+  S A     +H+T ATTD  TAQRWF +FEGAGLDGV+AK     Y
Sbjct  134  PFTERRAALEKALAASKA----PVHLTAATTDKDTAQRWFEQFEGAGLDGVVAKRLEGRY  189

Query  191  QPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASVGVIGAFPMAE  250
            +PDKRVMFK KH RTADCVVAGYR+HKSG DAIGSLLLGLY++DG LASVGVIGAFPM  
Sbjct  190  EPDKRVMFKTKHERTADCVVAGYRLHKSGPDAIGSLLLGLYKDDGGLASVGVIGAFPMKR  249

Query  251  RRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVPLRPERVVEVR  310
            RR L  +LQ LVT FD+HPW WA    G+RTPR  E SRW+ GKDLSFVPLRPE VVEVR
Sbjct  250  RRELYEQLQQLVTDFDNHPWAWAKQEEGERTPRNAEGSRWSAGKDLSFVPLRPELVVEVR  309

Query  311  YDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV  354
            YD MEG RFRHTAQFNRWRPDRDP SC+YAQLE P++  L  ++
Sbjct  310  YDHMEGDRFRHTAQFNRWRPDRDPESCTYAQLEEPVSFDLVSVL  353


>gi|116672625|ref|YP_833558.1| ATP-dependent DNA ligase [Arthrobacter sp. FB24]
 gi|116612734|gb|ABK05458.1| ATP dependent DNA ligase [Arthrobacter sp. FB24]
Length=363

 Score =  489 bits (1259),  Expect = 3e-136, Method: Compositional matrix adjust.
 Identities = 247/362 (69%), Positives = 285/362 (79%), Gaps = 12/362 (3%)

Query  1    MQLPVMPPVSPMLAKSVTAIP------PDASYEPKWDGFRSICFRDGDQVELGSRNERPM  54
            MQLPVMPP++PMLAK+V+A+P      P  S+EPKWDGFRSI FRDGD+VE+GSRN +PM
Sbjct  4    MQLPVMPPIAPMLAKAVSALPEVPDSGPKWSFEPKWDGFRSIIFRDGDEVEIGSRNGKPM  63

Query  55   TRYFPELVAAIRAELPHRCVIDGEIIIATDHG--LDFEALQQRIHPAESRVRMLADRTPA  112
            TRYFPELV A++A LP RCV+DGEII+    G  LDFEALQQRIHPA SRVR+LA +TPA
Sbjct  64   TRYFPELVEALKANLPPRCVLDGEIILVGASGDRLDFEALQQRIHPAASRVRLLAAQTPA  123

Query  113  SFIAFDLLALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSE  172
            SF+AFDLLAL D+D TGRPFSERR+ L  A+ GS A     IH+T  T D  TAQ+WF  
Sbjct  124  SFVAFDLLALDDEDLTGRPFSERRSMLEKALAGSAA----PIHLTSTTRDNGTAQQWFHR  179

Query  173  FEGAGLDGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQ  232
            FEGAGLDG++AK    +YQPDKRVM K+KH RTADCV+AGYRVH SG D IGSLLLGLY 
Sbjct  180  FEGAGLDGIVAKALDGSYQPDKRVMLKVKHERTADCVLAGYRVHTSGPDRIGSLLLGLYN  239

Query  233  EDGQLASVGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNV  292
             DGQLASVGV+GAFPM  R+ L  ELQPLVT FD HPW WA    G RTPR  E SRW+ 
Sbjct  240  GDGQLASVGVVGAFPMQRRKDLFEELQPLVTGFDGHPWAWAKQEEGSRTPRNAEGSRWSA  299

Query  293  GKDLSFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSD  352
            GKDLSF+PLRPERV+EV+YD MEG RFRHTAQF RWRPDRDP SC+Y QLE P+   L++
Sbjct  300  GKDLSFIPLRPERVLEVKYDHMEGERFRHTAQFVRWRPDRDPASCTYEQLEEPVKYDLAE  359

Query  353  IV  354
            ++
Sbjct  360  VL  361


>gi|84496262|ref|ZP_00995116.1| DNA ligase [Janibacter sp. HTCC2649]
 gi|84383030|gb|EAP98911.1| DNA ligase [Janibacter sp. HTCC2649]
Length=713

 Score =  480 bits (1235),  Expect = 2e-133, Method: Compositional matrix adjust.
 Identities = 237/355 (67%), Positives = 272/355 (77%), Gaps = 7/355 (1%)

Query  3    LPVMPPVSPMLAK-SVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPEL  61
            +PV+PP++PMLAK S   +  D SYEPKWDGFRSI +R GDQVE+GSRNE+PMTRYFP++
Sbjct  361  MPVVPPIAPMLAKPSKKLVEGDVSYEPKWDGFRSIIYRSGDQVEIGSRNEKPMTRYFPDV  420

Query  62   VAAIRAELPHRCVIDGEIIIA--TDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDL  119
            V A+ A  P +CV+DGEII+    +  LDFE LQQRIHPA SRV+ LA  TPASF+AFDL
Sbjct  421  VEAVLANFPDKCVVDGEIILIRPGEDRLDFELLQQRIHPAASRVKKLAGETPASFVAFDL  480

Query  120  LALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLD  179
            L+LG+ D  G PF  RRA L  A     A  +  IH+TPAT D+  AQ WF +FEGAGLD
Sbjct  481  LSLGERDLMGEPFEVRRAELEKAF----ATVESPIHLTPATRDVEQAQGWFQQFEGAGLD  536

Query  180  GVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLAS  239
            GV+AKP   TY+PDKR M K KH RTADCVVAGYR HK+G D IGSLLLGLY ++G LAS
Sbjct  537  GVMAKPLDGTYEPDKRTMHKFKHERTADCVVAGYRTHKTGDDLIGSLLLGLYDDEGALAS  596

Query  240  VGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFV  299
            VGVIGAFPMA R+ L  ELQ LVT FDDHPW WA    GQRTPRK E SRWN GKDLSF 
Sbjct  597  VGVIGAFPMARRKELFEELQELVTDFDDHPWAWAKQEEGQRTPRKGEGSRWNNGKDLSFT  656

Query  300  PLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV  354
            PLRPERVVEVRYD MEG RFRHTAQF RWR DRDP SC+YAQLE P++  L+D++
Sbjct  657  PLRPERVVEVRYDHMEGVRFRHTAQFVRWRTDRDPESCTYAQLEEPVSYDLADVL  711


>gi|284031238|ref|YP_003381169.1| ATP dependent DNA ligase [Kribbella flavida DSM 17836]
 gi|283810531|gb|ADB32370.1| ATP dependent DNA ligase [Kribbella flavida DSM 17836]
Length=354

 Score =  471 bits (1213),  Expect = 5e-131, Method: Compositional matrix adjust.
 Identities = 240/344 (70%), Positives = 265/344 (78%), Gaps = 7/344 (2%)

Query  14   AKSVTAIPP-DASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPELVAAIRAELPHR  72
            AK+V  IP  + S+EPKWDGFRSI FRDGD+VE+GSRNE+PMTRYFPELV AI+A LP R
Sbjct  14   AKAVKQIPDGEVSFEPKWDGFRSIIFRDGDEVEIGSRNEKPMTRYFPELVEAIKANLPQR  73

Query  73   CVIDGEIIIATDHG--LDFEALQQRIHPAESRVRMLADRTPASFIAFDLLALGDDDYTGR  130
            CVIDGEI++    G  LDFE LQQRIHPA SRV ML++ TPA F+AFDLLALGD DY  R
Sbjct  74   CVIDGEIVVIGASGDRLDFEVLQQRIHPAASRVTMLSETTPARFVAFDLLALGDTDYRER  133

Query  131  PFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDGVIAKPPHITY  190
            PF ERRAAL +A+  + A     IH+T  TTD A A  WF +FEGAGLDGVIAKP    Y
Sbjct  134  PFVERRAALEEALAPAKA----PIHLTRTTTDKAVATEWFHQFEGAGLDGVIAKPLDGLY  189

Query  191  QPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASVGVIGAFPMAE  250
            +PDKR MFKIKH RTADCVVAGYRVHKSG + IGSLLLGL+  DG LASVGVIGAFPMA 
Sbjct  190  EPDKRTMFKIKHERTADCVVAGYRVHKSGPNRIGSLLLGLFTSDGVLASVGVIGAFPMAR  249

Query  251  RRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLSFVPLRPERVVEVR  310
            R  L  ELQPLVT FDDHPW WA    G RTPR  E SRW  GKDLSFVPLRPERVVEVR
Sbjct  250  REELFEELQPLVTDFDDHPWAWAKQEEGNRTPRNAEGSRWQAGKDLSFVPLRPERVVEVR  309

Query  311  YDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV  354
            YD MEG RFRHTAQF RWR DR P SC+Y QLE P+   L+D++
Sbjct  310  YDHMEGVRFRHTAQFVRWRDDRTPESCTYEQLEEPVKFDLADVL  353


>gi|317126616|ref|YP_004100728.1| ATP dependent DNA ligase [Intrasporangium calvum DSM 43043]
 gi|315590704|gb|ADU50001.1| ATP dependent DNA ligase [Intrasporangium calvum DSM 43043]
Length=466

 Score =  469 bits (1206),  Expect = 4e-130, Method: Compositional matrix adjust.
 Identities = 239/361 (67%), Positives = 276/361 (77%), Gaps = 10/361 (2%)

Query  4    PVMPPVSPMLAKSVT---AIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            PV PPV+PMLAK+V    A+     YEPKWDGFRSI FR GD+VE+GSRNE+PMTRYFPE
Sbjct  109  PVPPPVAPMLAKAVKDFGAVKGTVVYEPKWDGFRSIIFRSGDEVEIGSRNEKPMTRYFPE  168

Query  61   LVAAIRAELPHRCVIDGEIII---ATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAF  117
            +V A++A  P R VIDGEII+      + LDFE LQQRIHPA SRVR LA  TPASF+AF
Sbjct  169  IVEAVKASFPERAVIDGEIILIDPTEGNRLDFELLQQRIHPAASRVRKLAAETPASFVAF  228

Query  118  DLLALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAG  177
            DLLALGD+DY GRPFSERRAAL  A+ G+ A     +H+T  T D + A+ WF +FEGAG
Sbjct  229  DLLALGDEDYRGRPFSERRAALEGALAGAEA----PVHLTAMTADQSVARDWFDQFEGAG  284

Query  178  LDGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQL  237
            LDGVIAKP  + Y+P+KR+MFK+KH RTADCVVAGYR HK+   AIGSLLLGLY  +G L
Sbjct  285  LDGVIAKPVDVRYEPEKRLMFKVKHERTADCVVAGYRTHKTDPTAIGSLLLGLYDGEGNL  344

Query  238  ASVGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLS  297
            ASVGVIGA PMA RR L  ELQPLV  +D+HPWNWA    G RTPR +E+SRWN  KDLS
Sbjct  345  ASVGVIGALPMARRRELYEELQPLVAEWDEHPWNWAKPEEGVRTPRSSEYSRWNNQKDLS  404

Query  298  FVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPGL  357
            F PLRPERVVEVRYD MEG RFRHTAQF RWRPDR P SC++AQLE P+   L+D++   
Sbjct  405  FTPLRPERVVEVRYDHMEGTRFRHTAQFVRWRPDRTPESCTFAQLEEPVGYDLADVLSAG  464

Query  358  R  358
            R
Sbjct  465  R  465


>gi|332671092|ref|YP_004454100.1| ATP dependent DNA ligase [Cellulomonas fimi ATCC 484]
 gi|332340130|gb|AEE46713.1| ATP dependent DNA ligase [Cellulomonas fimi ATCC 484]
Length=353

 Score =  469 bits (1206),  Expect = 4e-130, Method: Compositional matrix adjust.
 Identities = 245/358 (69%), Positives = 275/358 (77%), Gaps = 13/358 (3%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M+LPVMPPV+PMLAKSV  IP     EPKWDGFR+I FRDGD+VELGSRNE+PMTRYFPE
Sbjct  1    MRLPVMPPVAPMLAKSVPTIPDVGHVEPKWDGFRTIVFRDGDEVELGSRNEKPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LV AIRA  P RCV+DGEI++ T   LDF+ALQQRIHPA SRVR+LA  TPASF+AFDLL
Sbjct  61   LVEAIRANTPERCVLDGEIVVVTGDRLDFDALQQRIHPAASRVRLLAGSTPASFVAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            AL D+DY  RPF +RRAALV+A+    ADA   + VTPAT D+A AQ WF+ FEGAGLDG
Sbjct  121  ALDDEDYMQRPFRDRRAALVEAL----ADARDPVFVTPATGDLAQAQDWFTRFEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            V+AKP   TYQPDKR MFKIKH RTADCVVAG+R HK+G D +GSLLLGLY +DG L  V
Sbjct  177  VVAKPLDGTYQPDKRTMFKIKHERTADCVVAGFRWHKTG-DVVGSLLLGLYDDDGDLQHV  235

Query  241  GVIGAFPMAERRRLLTELQPLV-TSFDDHPWN-WA---AHVAGQRTPRKNEFSRWNVGKD  295
            GV  +FPMA RR LL +L P       DHPW  WA   AH AG R P     SRWN  KD
Sbjct  236  GVSASFPMARRRTLLDDLAPYRDVELADHPWGRWAQAEAH-AGNRMP--GAVSRWNAKKD  292

Query  296  LSFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDI  353
            LSFVPLRPE VVEV YD MEG RFRHTAQF RWR DRDPRSC+YAQLE+P+T  L++I
Sbjct  293  LSFVPLRPELVVEVAYDHMEGDRFRHTAQFRRWRTDRDPRSCTYAQLEQPVTFDLAEI  350


>gi|312196148|ref|YP_004016209.1| ATP dependent DNA ligase [Frankia sp. EuI1c]
 gi|311227484|gb|ADP80339.1| ATP dependent DNA ligase [Frankia sp. EuI1c]
Length=360

 Score =  457 bits (1176),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 247/364 (68%), Positives = 284/364 (79%), Gaps = 13/364 (3%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            MQLPVMPPV+PMLAKSV  IP  ASYEPKWDGFR ICFRDGD+VELGSRNE+PMTRYFPE
Sbjct  1    MQLPVMPPVAPMLAKSVPTIPSGASYEPKWDGFRCICFRDGDEVELGSRNEKPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LV AI+AELP RCV+DGEI+IA D  LDFEALQQRIHPA SRV++L+  TPASFIAFDLL
Sbjct  61   LVEAIKAELPDRCVLDGEIVIALDGRLDFEALQQRIHPAVSRVKLLSGTTPASFIAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGD+DYTGRPF+ERRAAL  A+  + A     IH+T  TTD+  A RWF E EGA LDG
Sbjct  121  ALGDEDYTGRPFAERRAALEAALAPAKA----PIHLTTTTTDLDVANRWFVELEGAHLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDA---IGSLLLGLYQEDGQL  237
            VIAKP    YQPDKRVMFKIKH+RTADCV+AG+R HK+ ++A   +GSLLLGLY ++ +L
Sbjct  177  VIAKPLDGVYQPDKRVMFKIKHVRTADCVLAGFRWHKTSTEAAPLVGSLLLGLYNDEHKL  236

Query  238  ASVGVIGAFPMAERRRLLTELQPLVTS-FDDHPWN-WAAHVA--GQRTPRKNEFSRWNVG  293
              VGV+GAF    R  L+ EL PL+    DDHPW  WA+  A  GQR P     +RWN  
Sbjct  237  QHVGVVGAFTAKRRAELVDELAPLLLGDGDDHPWQEWASAEAHQGQRLP--GNVNRWNAQ  294

Query  294  KDLSFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDI  353
            KDLSF+PLRPERV+EV+Y+ MEG RFRH A F RWR DR P SC+Y QLE+PLT +LSDI
Sbjct  295  KDLSFIPLRPERVLEVKYEHMEGTRFRHLAHFVRWRADRTPASCTYEQLEQPLTYTLSDI  354

Query  354  VPGL  357
            VPGL
Sbjct  355  VPGL  358


>gi|119960689|ref|YP_949544.1| ATP-dependent DNA ligase [Arthrobacter aurescens TC1]
 gi|119947548|gb|ABM06459.1| putative ATP dependent DNA ligase [Arthrobacter aurescens TC1]
Length=354

 Score =  437 bits (1123),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 216/358 (61%), Positives = 262/358 (74%), Gaps = 11/358 (3%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPVSPMLAKSV  IP    YEPKWDGFR+I F+DGD++ LGSRNE+PMTRYFPE
Sbjct  1    MDLPVMPPVSPMLAKSVPTIPDVGHYEPKWDGFRTIVFKDGDEIVLGSRNEKPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            +V A+R  LP +CVIDGEI++     L+FE LQQRIHPA+SRVRMLA++TPAS IAFD+L
Sbjct  61   VVEALRKNLPDKCVIDGEIVLIEGKRLEFEVLQQRIHPADSRVRMLAEKTPASMIAFDIL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGD++   +PFSERRA L  A     A A+  ++VTPA TD+  AQ WF + EGAGLDG
Sbjct  121  ALGDENLMDKPFSERRAILERAF----AKAEPPVYVTPAVTDLEQAQEWFVQLEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            V++KP    YQP+KRVMFK KH RTADCVVAG+R HK+ +  +GS+LLGL+ + G+L  V
Sbjct  177  VLSKPLDGAYQPNKRVMFKTKHERTADCVVAGFRWHKT-AKVVGSMLLGLHDDTGRLHHV  235

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPW-NWAAH---VAGQRTPRKNEFSRWNVGKDL  296
            GV+ +FPMA R  L+ EL+P      +HPW  WA       G R P     SRW+ GKD 
Sbjct  236  GVVASFPMARREALVAELEPYQVELSEHPWGEWANQDETAGGSRMPGAQ--SRWSGGKDF  293

Query  297  SFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV  354
            SFVPLRPE V+EV+YD MEG RFRHT QF RWRPDR P SC+Y+QLE P    L +I+
Sbjct  294  SFVPLRPELVIEVKYDYMEGDRFRHTTQFRRWRPDRTPESCTYSQLEEPADYDLGEIL  351


>gi|296129101|ref|YP_003636351.1| ATP dependent DNA ligase [Cellulomonas flavigena DSM 20109]
 gi|296020916|gb|ADG74152.1| ATP dependent DNA ligase [Cellulomonas flavigena DSM 20109]
Length=348

 Score =  431 bits (1109),  Expect = 7e-119, Method: Compositional matrix adjust.
 Identities = 230/353 (66%), Positives = 265/353 (76%), Gaps = 7/353 (1%)

Query  6    MPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPELVAAI  65
            MPPV+PMLAKSV  IP     EPKWDGFR+I FRD D VELGSRN +PMTRYFPELV A+
Sbjct  1    MPPVAPMLAKSVKEIPDTGHVEPKWDGFRTIVFRDEDDVELGSRNGKPMTRYFPELVEAL  60

Query  66   RAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLLALGDD  125
            +  LP RCV+DGEI++ T   LDF+ALQQRIHPA SRV++LA +TPASF+AFDLLALGDD
Sbjct  61   KENLPERCVLDGEIVVVTGDRLDFDALQQRIHPAASRVKLLAGQTPASFVAFDLLALGDD  120

Query  126  DYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDGVIAKP  185
            D TGRPFSERRA LV+A+ G    A   +HVT AT DMA AQRWF++FEGAGLDGV+AKP
Sbjct  121  DLTGRPFSERRARLVEALAG----ARPPVHVTRATGDMAEAQRWFTQFEGAGLDGVVAKP  176

Query  186  PHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASVGVIGA  245
                YQPDKR MFKIKH RTADCVVAG+R HK+G D +GSLLLGL+ ++G+L  VGV  +
Sbjct  177  LDAPYQPDKRAMFKIKHERTADCVVAGFRWHKTG-DVVGSLLLGLWNDEGRLQHVGVSAS  235

Query  246  FPMAERRRLLTELQPLV-TSFDDHPWN-WAAHVAGQRTPRKNEFSRWNVGKDLSFVPLRP  303
            FPMA RR LL +L P       DHPW  WA   A          SRWN  KDLSFVPLRP
Sbjct  236  FPMARRRTLLDDLAPYRDVDLADHPWGAWADQQAHADNRLPGAVSRWNATKDLSFVPLRP  295

Query  304  ERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPG  356
            E VVEV YD MEG RFRHTAQF RWR DRDPR+C+Y QL+ P+   L+D++ G
Sbjct  296  ELVVEVAYDHMEGDRFRHTAQFRRWRTDRDPRTCTYEQLDEPVGYDLADVLGG  348


>gi|284990460|ref|YP_003409014.1| ATP dependent DNA ligase [Geodermatophilus obscurus DSM 43160]
 gi|284063705|gb|ADB74643.1| ATP dependent DNA ligase [Geodermatophilus obscurus DSM 43160]
Length=359

 Score =  428 bits (1101),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 216/365 (60%), Positives = 267/365 (74%), Gaps = 15/365 (4%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDAS--YEPKWDGFRSICFRDGDQVELGSRNERPMTRYF  58
            M LP++PPV PMLAK+VT +P      YEPKWDGFR I FRDGD+VELGSRNERP+TRYF
Sbjct  1    MDLPLLPPVKPMLAKAVTKVPTAEGMFYEPKWDGFRCIVFRDGDEVELGSRNERPLTRYF  60

Query  59   PELVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFD  118
            PE+V A++A LP RCV+DGEI++     L FEAL QRIHPAESR+R+LA++TPASF+AFD
Sbjct  61   PEVVEAVKAALPERCVVDGEIVVPNGDRLHFEALLQRIHPAESRIRLLAEQTPASFVAFD  120

Query  119  LLALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGL  178
            LLA+GD+     PF++RRA L + VTG+      S+HVT  T D  TAQRWF EFEGAGL
Sbjct  121  LLAIGDESLMETPFAQRRARLQEVVTGTD-----SVHVTAITQDPDTAQRWFQEFEGAGL  175

Query  179  DGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLA  238
            DGV+AKP  + Y PD+R+M K+KH+RTADCVVAG+R HKSG   +GSLLLGLY + G L 
Sbjct  176  DGVVAKPADLPYGPDQRLMTKVKHVRTADCVVAGFRWHKSGP-IVGSLLLGLYDDSGDLQ  234

Query  239  SVGVIGAFPMAERRRLLTELQPL-VTSFDDHPW-NWA-AHVAGQRTPRKNEF----SRWN  291
             +GV  +FPMA R  L+ EL P    + D HPW +WA A V       ++      SRWN
Sbjct  235  HIGVAASFPMARRAELVEELAPYRAEALDGHPWQDWANAQVVNGSNGDEHRMPGAQSRWN  294

Query  292  VGKDLSFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLS  351
             GKDLS+VP+RPE VVEV+YD++EG R RHT QF RWRPDR+ RSC+Y QLE P+   L+
Sbjct  295  AGKDLSWVPMRPELVVEVKYDQLEGRRLRHTGQFLRWRPDREARSCTYDQLEVPVRYDLA  354

Query  352  DIVPG  356
            ++  G
Sbjct  355  EVFDG  359


>gi|302555476|ref|ZP_07307818.1| DNA polymerase LigD, ligase domain-containing protein [Streptomyces 
viridochromogenes DSM 40736]
 gi|302473094|gb|EFL36187.1| DNA polymerase LigD, ligase domain-containing protein [Streptomyces 
viridochromogenes DSM 40736]
Length=357

 Score =  426 bits (1095),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 217/359 (61%), Positives = 261/359 (73%), Gaps = 8/359 (2%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPV PMLAKSV AIP    YE KWDGFR+I FRDGD+VELGSR  +P+TRYFPE
Sbjct  1    MDLPVMPPVLPMLAKSVAAIPAGMQYEAKWDGFRAIVFRDGDEVELGSRTGKPLTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LV A+R  LP RCV+DGEI+IA +  LDF+AL +RIHPA+SRVRMLA+RTPAS + FDLL
Sbjct  61   LVTAVRERLPQRCVVDGEIVIAREGHLDFDALTERIHPADSRVRMLAERTPASLVVFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGD+     P +ERR  L   ++G  A     +H+ PATTD+  A++WF E+EGAGLDG
Sbjct  121  ALGDESLMDVPLTERREVLTRELSGVTA----PVHLAPATTDIEVARQWFEEYEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKP  + Y+PD+R MFK+KH RTAD VVAGYR+HKSG   +GSLLLGLY + G L  V
Sbjct  177  VIAKPLTVRYRPDQRAMFKVKHERTADVVVAGYRLHKSGP-VVGSLLLGLYDDRGTLQHV  235

Query  241  GVIGAFPMAERRRLLTELQPL-VTSFDDHPW-NWAAHVAGQRTPRKNEFSRWNVGKDLSF  298
            GV  AF M  R  L+ EL+PL +     HPW  W+   A ++       SRW+  KDLS+
Sbjct  236  GVSAAFTMKRRAELVEELEPLRMDDVQGHPWAAWSDEAAHEKARLPGAPSRWSGRKDLSW  295

Query  299  VPLRPERVVEVRYDRME-GARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPG  356
            VPLRPERVVEV YD ME G RFRHTA+F RWRPDR P SC+YAQLE P+   L++I+ G
Sbjct  296  VPLRPERVVEVAYDHMENGQRFRHTARFRRWRPDRTPESCTYAQLEEPVRYDLAEILGG  354


>gi|111221544|ref|YP_712338.1| ATP-dependent DNA ligase [Frankia alni ACN14a]
 gi|111149076|emb|CAJ60759.1| ATP-dependent DNA ligase (LigC) [Frankia alni ACN14a]
Length=387

 Score =  425 bits (1093),  Expect = 6e-117, Method: Compositional matrix adjust.
 Identities = 224/382 (59%), Positives = 266/382 (70%), Gaps = 30/382 (7%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            + LPV+PPV PMLA++V  IPP   YEPKWDGFR++ FRDGD VE+ SR  + MTRYFPE
Sbjct  7    VDLPVVPPVKPMLARAVAEIPPGLVYEPKWDGFRALVFRDGDAVEITSRTTKSMTRYFPE  66

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAA+RA LP RCV+DGEI++A +HGLDFEALQQR+HPA SRV  LA  T  SF+AFDLL
Sbjct  67   LVAALRAVLPARCVLDGEIVVAGEHGLDFEALQQRVHPAASRVARLAAETQVSFVAFDLL  126

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            A+GD      PF+ RRA L + +   G  A + +HVTPAT D+  A+RWF +FEGAGLDG
Sbjct  127  AVGDRALLDEPFARRRAELAELLR-PGDAAGVRVHVTPATDDLDLARRWFDQFEGAGLDG  185

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQE---DGQL  237
            +IAKPP   Y+PD+R MFKIKH RTADCVVAGYR HKSG+ A+GSLLLGLY +   DG  
Sbjct  186  IIAKPPTGGYEPDRRTMFKIKHERTADCVVAGYRPHKSGAGAVGSLLLGLYPDPDPDGTG  245

Query  238  AS-------------------------VGVIGAFPMAERRRLLTELQPLVTSFDDHPWNW  272
             +                         VGV  AF MA RR L++EL PLV   D+HPW  
Sbjct  246  TTADADAGPGAGDPAGGSALAGAGLAAVGVTSAFAMARRRELVSELAPLVIPIDEHPWAP  305

Query  273  AAHVAGQRTPRKNEFSRWNVGKDLSFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDR  332
            A    G RTP     SRW  G+DLSFVPLRP  V EVRYD MEG RFRHT QF R+RPDR
Sbjct  306  AGS-GGTRTPWDAGESRWAAGRDLSFVPLRPVLVAEVRYDHMEGPRFRHTTQFVRFRPDR  364

Query  333  DPRSCSYAQLERPLTVSLSDIV  354
            DP SC++AQLERP+ V L+D++
Sbjct  365  DPHSCTFAQLERPVRVDLADVL  386


>gi|336321405|ref|YP_004601373.1| ATP dependent DNA ligase [Cellvibrio gilvus ATCC 13127]
 gi|336104986|gb|AEI12805.1| ATP dependent DNA ligase [Cellvibrio gilvus ATCC 13127]
Length=352

 Score =  423 bits (1087),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 228/360 (64%), Positives = 267/360 (75%), Gaps = 12/360 (3%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M+LPVMPPV+PMLA+SV  IP     EPKWDGFR+I FRDGD+VELGSRNE+P+TRYFPE
Sbjct  1    MRLPVMPPVAPMLARSVKDIPDVGHVEPKWDGFRTIVFRDGDEVELGSRNEKPLTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LV  I+A  P RCV+DGEI+I     L ++AL  RIHPA SRVR+LA++TPAS +AFDLL
Sbjct  61   LVEQIKAHTPDRCVLDGEIVIVEGDHLAWDALTNRIHPAASRVRLLAEQTPASLVAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGD+D  G P  +RR  LVDA+     +A   +HVTPAT DM  A RWF++FEGAGLDG
Sbjct  121  ALGDEDLMGAPLRDRRRRLVDAL----GEAHSPVHVTPATADMDEAHRWFTQFEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            V+AKP   TYQPDKR MFK+KH RTADCVVAG+R HK+G   +GSLLLGL+ ++G L  V
Sbjct  177  VVAKPLDGTYQPDKRAMFKVKHERTADCVVAGFRWHKTGG-ILGSLLLGLWDDEGHLQHV  235

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPW-NWA---AHVAGQRTPRKNEFSRWNVGKDL  296
            GV  +FPMA R  L+ EL PL T   DHPW  WA   AH AG R P     SRWN  KDL
Sbjct  236  GVAASFPMARRAALIEELAPLRTDVGDHPWAQWADSDAH-AGNRLP--GAVSRWNATKDL  292

Query  297  SFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPG  356
            SF PLRPE VVEV YD MEG RFRHTAQF RWRPDRDP +C+YAQLE P+   L+D++ G
Sbjct  293  SFEPLRPELVVEVAYDHMEGTRFRHTAQFRRWRPDRDPATCTYAQLETPVRFDLADVLGG  352


>gi|288917128|ref|ZP_06411498.1| ATP dependent DNA ligase [Frankia sp. EUN1f]
 gi|288351497|gb|EFC85704.1| ATP dependent DNA ligase [Frankia sp. EUN1f]
Length=387

 Score =  423 bits (1087),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 223/385 (58%), Positives = 261/385 (68%), Gaps = 30/385 (7%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPV PMLA++ +AIPP   YEPKWDGFR++ FRDG ++E+ SRN RPMTRYFPE
Sbjct  1    MDLPVMPPVKPMLARAASAIPPGMLYEPKWDGFRALVFRDGAELEITSRNTRPMTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LV  + A LP RCV+DGEI++    GLDFE L QR+HPA SRV  LA  TP SF+AFDLL
Sbjct  61   LVEILLAVLPERCVLDGEIVVIAPGGLDFEELSQRVHPAASRVDRLARETPVSFVAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVT-------------GSG-ADADL-------SIHVTPA  159
            ALGD    G P + RRAAL D +              GSG A  +L        +++TPA
Sbjct  121  ALGDTALVGEPLARRRAALEDLLAGRTGPGVASSPPPGSGPAGTELPPGRPPAGVYLTPA  180

Query  160  TTDMATAQRWFSEFEGAGLDGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSG  219
            T D   A  WF  FEGAGLDG++AKPP   Y+PDKR M K+KH RTADCVVAGYR +K+ 
Sbjct  181  TDDPDVAADWFRRFEGAGLDGLVAKPPAGHYEPDKRAMIKVKHERTADCVVAGYRPYKND  240

Query  220  SDAIGSLLLGLYQEDGQLASVGVIGAFPMAERRRLLTELQPLVTSFDDHPW--------N  271
              A+GSLLLGLY +   L SVGV  AFPMA RR L+ EL PLVT+ DDHPW         
Sbjct  241  PAAVGSLLLGLY-DGSSLLSVGVTSAFPMARRRELVGELAPLVTAIDDHPWARPGGPDGT  299

Query  272  WAAHVAGQRTPRKNEFSRWNVGKDLSFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPD  331
              A  A  RTP     SRW  G+DLSFVPLRPERVVEVRYD MEG RFRHT QF R+RPD
Sbjct  300  EGADGAATRTPWDAGESRWARGRDLSFVPLRPERVVEVRYDHMEGPRFRHTTQFVRFRPD  359

Query  332  RDPRSCSYAQLERPLTVSLSDIVPG  356
            RDP  C+Y QLERP+   ++D++ G
Sbjct  360  RDPLECTYEQLERPVGFEIADVLSG  384


>gi|291455296|ref|ZP_06594686.1| ATP-dependent DNA ligase [Streptomyces albus J1074]
 gi|291358245|gb|EFE85147.1| ATP-dependent DNA ligase [Streptomyces albus J1074]
Length=355

 Score =  420 bits (1079),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 212/356 (60%), Positives = 253/356 (72%), Gaps = 7/356 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPV PMLAKSV  IPP   YE KWDGFR++ FRDG ++ELGSR  + +TRYFPE
Sbjct  1    MDLPVMPPVKPMLAKSVARIPPGMQYEAKWDGFRALVFRDGPELELGSRTGKTLTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LVAA+   LP RCV+DGEI++A D  LDFE L +RIHPA SRVRMLA+R PASF+AFDLL
Sbjct  61   LVAALLERLPERCVVDGEIVMARDGRLDFELLSERIHPAASRVRMLAERNPASFVAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGD+D T RP + RRA L + +     +A   +HV PAT D   A+RWF  FEGAGLDG
Sbjct  121  ALGDEDLTTRPLTARRALLEEEL----GEAAPPLHVAPATRDPELAERWFDRFEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            V+AKP ++ Y+P++RVM+KIKH RTADCVVAGYR H+ G+  +GSLLLGLY + G L  V
Sbjct  177  VVAKPLNLGYRPNERVMYKIKHGRTADCVVAGYRTHRGGT-GVGSLLLGLYDDAGTLQHV  235

Query  241  GVIGAFPMAERRRLLTELQPL-VTSFDDHPW-NWAAHVAGQRTPRKNEFSRWNVGKDLSF  298
            GV  AF    R  L+ EL+PL + S  DHPW  W    A +        SRW+  KDLS+
Sbjct  236  GVCAAFTARRRTELIAELEPLRLESVADHPWAAWGEAAAHEEARLPGAPSRWSGTKDLSW  295

Query  299  VPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV  354
            VPLRPERV EV YD MEG RFRHT QF RWRPDR P SC+YAQL  P+   L  ++
Sbjct  296  VPLRPERVCEVGYDHMEGTRFRHTTQFKRWRPDRTPESCTYAQLAEPVRYDLGAVL  351


>gi|297190639|ref|ZP_06908037.1| ATP-dependent DNA ligase [Streptomyces pristinaespiralis ATCC 
25486]
 gi|297150569|gb|EFH30670.1| ATP-dependent DNA ligase [Streptomyces pristinaespiralis ATCC 
25486]
Length=356

 Score =  418 bits (1074),  Expect = 7e-115, Method: Compositional matrix adjust.
 Identities = 216/360 (60%), Positives = 262/360 (73%), Gaps = 13/360 (3%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPV PMLAK+V  IPP   YE KWDGFR+I  RDGD++ +GSR  +P+TRYFPE
Sbjct  1    MDLPVMPPVKPMLAKAVKKIPPGMHYEAKWDGFRAIVHRDGDELVIGSRTGKPLTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LV ++   LP RCVIDGEI+IA +  LDF+ L +RIHPA+SRVRMLA+RTPASF+AFD+L
Sbjct  61   LVTSLSENLPARCVIDGEIVIAHEGRLDFDRLTERIHPADSRVRMLAERTPASFVAFDVL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGD+     P   RR  L +A+    ADA   +H+TP TTD+  AQRWF ++EGAGLDG
Sbjct  121  ALGDESLMDAPLGARRERLEEAL----ADARPPVHLTPTTTDVEVAQRWFEQYEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            V+AKP  + Y+PD R+M+K+KH RTAD VVAGYR HKSG   +GSLLLGL+ + G L  V
Sbjct  177  VVAKPLDLPYRPDVRLMYKVKHERTADVVVAGYRFHKSGP-VVGSLLLGLFDDSGALQHV  235

Query  241  GVIGAFPMAERRRLLTELQPL-VTSFDDHPW-NWA---AHVAGQRTPRKNEFSRWNVGKD  295
            GV  AF M  R  L+ EL+PL +   + HPW  WA   AH AG R P     SRW+  KD
Sbjct  236  GVCAAFSMKRREELVAELEPLRMDPVEGHPWAAWAEESAH-AGARLP--GAPSRWSGKKD  292

Query  296  LSFVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVP  355
            LS+V LRPERVVEV YD MEG RFRHTAQF RWRPDRDP SC+YAQLE P++  L+ ++P
Sbjct  293  LSWVALRPERVVEVAYDHMEGDRFRHTAQFRRWRPDRDPSSCTYAQLEEPVSYDLAQVLP  352


>gi|29828239|ref|NP_822873.1| ATP-dependent DNA ligase [Streptomyces avermitilis MA-4680]
 gi|29605341|dbj|BAC69408.1| putative DNA ligase [Streptomyces avermitilis MA-4680]
Length=356

 Score =  417 bits (1071),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 222/357 (63%), Positives = 262/357 (74%), Gaps = 8/357 (2%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPV PMLAKSV  IPPD  YE KWDGFR+I FRDG +VELGSR  +P+TRYFPE
Sbjct  1    MDLPVMPPVKPMLAKSVAKIPPDMQYEAKWDGFRAIVFRDGTEVELGSRTGKPLTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LV A+R  LP RCVIDGEI+IA D  LDF+AL +RIHPAESRVRMLA++TPASF+AFDLL
Sbjct  61   LVEALRDRLPERCVIDGEIVIARDGRLDFDALTERIHPAESRVRMLAEKTPASFVAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            AL DD     P +ERRA L  A++G  A     +HV PATTD   A++WF ++EGAGLDG
Sbjct  121  ALADDSLLDTPLTERRALLESALSGVTA----PVHVAPATTDREVAEQWFEQYEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKP  + Y+ D+R MFK+KH RTAD VVAGYR+HKSG   +GSLLLGLY + G L  V
Sbjct  177  VIAKPLTLRYRQDERAMFKVKHERTADVVVAGYRLHKSGP-VVGSLLLGLYDDRGALQHV  235

Query  241  GVIGAFPMAERRRLLTELQPL-VTSFDDHPW-NWAAHVAGQRTPRKNEFSRWNVGKDLSF  298
            GV  AFPM  R  L+ EL+PL +     HPW  W+   A +        SRW+  KDLS+
Sbjct  236  GVSAAFPMKRRAELVEELEPLRMEDAAGHPWAAWSNEAAHETARLPGAPSRWSGKKDLSW  295

Query  299  VPLRPERVVEVRYDRME-GARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV  354
            VPLRPERV EV YD ME GARFRHTA+F RWRPDR P SC+YAQLE P++  L++I+
Sbjct  296  VPLRPERVAEVAYDHMENGARFRHTARFRRWRPDRTPESCTYAQLEEPVSYDLTEIL  352


>gi|302557157|ref|ZP_07309499.1| DNA ligase [Streptomyces griseoflavus Tu4000]
 gi|302474775|gb|EFL37868.1| DNA ligase [Streptomyces griseoflavus Tu4000]
Length=355

 Score =  415 bits (1066),  Expect = 6e-114, Method: Compositional matrix adjust.
 Identities = 215/357 (61%), Positives = 256/357 (72%), Gaps = 8/357 (2%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPV PMLAKSV  IPP   YE KWDGFR+I FRDGD+VELGSR  +P+TRYFPE
Sbjct  1    MDLPVMPPVKPMLAKSVARIPPGMQYEAKWDGFRAIVFRDGDEVELGSRTGKPLTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LV A+R  LP RCV+DGEI+IA +  LDF+AL +RIHPA+SRVR LA RTPASF+AFDLL
Sbjct  61   LVEAVRERLPERCVMDGEIVIAREGHLDFDALTERIHPADSRVRTLAGRTPASFVAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGD+     P +ERR  L   + G        +H+ PATTD+  A+ WF ++EGAGLDG
Sbjct  121  ALGDESLLEVPQTERRERLAGVLEG----VRPPVHLAPATTDIDVARGWFEQYEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            VIAKPP + Y+ D+R MFKIKH RTAD VVAGYR+HKSG   +GSLLLGLY ++G+L  V
Sbjct  177  VIAKPPTLRYRQDERAMFKIKHERTADVVVAGYRLHKSGP-VVGSLLLGLYDDEGRLQHV  235

Query  241  GVIGAFPMAERRRLLTELQPL-VTSFDDHPW-NWAAHVAGQRTPRKNEFSRWNVGKDLSF  298
            GV  AF M  R  L+ EL+PL +     HPW +WA   A +        SRW+  KDLS+
Sbjct  236  GVSAAFSMKRRAELIEELEPLRMDDVTGHPWASWADESAHESARLPGAPSRWSGRKDLSW  295

Query  299  VPLRPERVVEVRYDRME-GARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV  354
            VPLRPERV EV YD ME G RFRHTA+F RWRPDR P SC Y QLE P+   L++I+
Sbjct  296  VPLRPERVAEVAYDHMENGRRFRHTARFRRWRPDRTPESCVYGQLEEPVRYDLAEIL  352


>gi|337769488|emb|CCB78201.1| ATP-dependent DNA ligase [Streptomyces cattleya NRRL 8057]
Length=359

 Score =  414 bits (1063),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 214/357 (60%), Positives = 262/357 (74%), Gaps = 7/357 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPV PMLA+    IPP  SYE KWDGFR+I FRDGD+VELGSR  +P+TRYFPE
Sbjct  1    MDLPVMPPVKPMLARLAATIPPGMSYEAKWDGFRAIVFRDGDEVELGSRTAKPLTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            +V A+RA +P RCV+DGEI+IA    LDF+AL +RIHPA+SRV +L+ RTPASF+AFD+L
Sbjct  61   VVEAVRANVPGRCVLDGEIVIARGGRLDFDALLERIHPAKSRVELLSRRTPASFVAFDIL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGD         +RRA L +A+ G+       +H+ PATTD+A A+ WFS +EGAGLDG
Sbjct  121  ALGDRSLMAAAQRDRRALLAEALAGAVH----PVHIAPATTDLALAEEWFSRYEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            V+AKP  + Y+PD+RVM K+KH RTADCVVAG+R HKSG   +GSLLLGL+   G L  V
Sbjct  177  VVAKPLDLPYRPDERVMVKVKHERTADCVVAGFRYHKSGP-VVGSLLLGLHDAAGGLRHV  235

Query  241  GVIGAFPMAERRRLLTELQPL-VTSFDDHPW-NWAAHVAGQRTPRKNEFSRWNVGKDLSF  298
            GV  AFPMA R+ LLTEL+PL + SF+ HPW +WA   A          SRW+  KDLS+
Sbjct  236  GVTSAFPMARRKALLTELEPLRMASFEGHPWAHWADPEAHTTDRMPGAPSRWSGKKDLSW  295

Query  299  VPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVP  355
            +PLRPERV EV YD M+G RFRHTAQF RWRPDRDP  C+YAQL  P+   L+D++P
Sbjct  296  IPLRPERVCEVAYDHMQGDRFRHTAQFRRWRPDRDPGDCTYAQLAEPVRYELADVLP  352


>gi|271967966|ref|YP_003342162.1| ATP-dependent DNA ligase [Streptosporangium roseum DSM 43021]
 gi|270511141|gb|ACZ89419.1| ATP-dependent DNA ligase [Streptosporangium roseum DSM 43021]
Length=346

 Score =  413 bits (1061),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 212/359 (60%), Positives = 254/359 (71%), Gaps = 16/359 (4%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDAS---YEPKWDGFRSICFRDGDQVELGSRNERPMTRY  57
            M+LP+ PP++PMLAK+V ++PP      YEPKWDGFR + FRDGD+V LGSRNERP TRY
Sbjct  1    MRLPIAPPLAPMLAKAVRSLPPQDGTLFYEPKWDGFRCVVFRDGDEVYLGSRNERPFTRY  60

Query  58   FPELVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAF  117
            FPELV A+RAELP R V+DGEI++     LDFEALQQRIHPA SRVR+LA +TPASF+AF
Sbjct  61   FPELVEAVRAELPDRVVVDGEIVVRDGQTLDFEALQQRIHPAASRVRLLAGQTPASFVAF  120

Query  118  DLLALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAG  177
            DLLALG++     PF+ RR  L     G+G     ++ +TP TT    A  WF+ FEGAG
Sbjct  121  DLLALGEESLLDVPFAARRTRLESIFGGAGH----AVRLTPITTSEERAAEWFAAFEGAG  176

Query  178  LDGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQL  237
            LDG++ KP  + YQPDKRVM K+KH RTAD VVAGYR HKSG   +GSLLLGL+  +G L
Sbjct  177  LDGIVVKPGGLPYQPDKRVMSKVKHERTADVVVAGYREHKSGP-VVGSLLLGLHDAEGVL  235

Query  238  ASVGVIGAFPMAERRRLLTELQPLVTSFDDHPWNWAAHVAGQRTPRKNEFSRWNVGKDLS  297
              VGV  +F M  R  L+ EL P V+   DHPW+ AA + G         S+W+  KDLS
Sbjct  236  HHVGVAASFTMKRRAELVEELAPYVSRDGDHPWS-AASLPGA-------ISKWSATKDLS  287

Query  298  FVPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPG  356
            FVPLR E VVEV YD MEG RFRHTAQF RWRPDR P SC+Y QLERP++  L DI+ G
Sbjct  288  FVPLRSELVVEVAYDHMEGRRFRHTAQFRRWRPDRTPESCTYEQLERPVSYDLDDILTG  346


>gi|302540328|ref|ZP_07292670.1| putative DNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302457946|gb|EFL21039.1| putative DNA ligase [Streptomyces himastatinicus ATCC 53653]
Length=353

 Score =  412 bits (1059),  Expect = 4e-113, Method: Compositional matrix adjust.
 Identities = 209/356 (59%), Positives = 259/356 (73%), Gaps = 7/356 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPV+PMLAKSV  IPP   YE KWDGFR+I FRDGD++E+GSR  +P+TRYFPE
Sbjct  1    MDLPVMPPVAPMLAKSVATIPPGMRYEAKWDGFRAIVFRDGDEIEVGSRTGKPLTRYFPE  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LV A R  LP RCV+DGEI+IA +  LDF+AL +RIHPA+SRVRMLA  TPA F+AFDLL
Sbjct  61   LVDAFRTHLPPRCVLDGEIVIAREGRLDFDALLERIHPADSRVRMLARTTPAGFVAFDLL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            ALGD  Y   P SERR AL +A+     +A   +   P T D+  A+RWF  +EGAGLDG
Sbjct  121  ALGDTSYLDAPLSERRDALTEALR----EAADPVFTAPWTDDVDVARRWFDHYEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            ++AK P + Y+P +RVM K+KH RTADCVVAG R+HKSG   +GSLLLGL+   G+L  V
Sbjct  177  IVAKRPDLGYRPGERVMVKVKHERTADCVVAGLRLHKSGP-VVGSLLLGLHDATGRLQHV  235

Query  241  GVIGAFPMAERRRLLTELQPL-VTSFDDHPW-NWAAHVAGQRTPRKNEFSRWNVGKDLSF  298
            GV  AFPM  R+ L+TEL+PL + S + HPW +WA   A  ++      SRW   KDLS+
Sbjct  236  GVCAAFPMRRRQELMTELEPLRMESVEGHPWADWAREEAHAQSRMPGAPSRWTGVKDLSW  295

Query  299  VPLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV  354
            +PLRPERV EV YD M+G RFRHTA+F RWRPDR+P  C+YAQLE P++  L +++
Sbjct  296  LPLRPERVCEVAYDHMQGDRFRHTARFRRWRPDREPGDCTYAQLEEPVSYDLREVL  351


>gi|158316925|ref|YP_001509433.1| ATP-dependent DNA ligase [Frankia sp. EAN1pec]
 gi|158112330|gb|ABW14527.1| ATP dependent DNA ligase [Frankia sp. EAN1pec]
Length=408

 Score =  411 bits (1057),  Expect = 7e-113, Method: Compositional matrix adjust.
 Identities = 215/397 (55%), Positives = 261/397 (66%), Gaps = 43/397 (10%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            + LPV PPV PMLA++   IPPD  YEPKWDGFR++ FRDG ++E+ SRN RPMTRYFPE
Sbjct  7    VDLPVTPPVKPMLARAAPQIPPDMLYEPKWDGFRALVFRDGAELEITSRNTRPMTRYFPE  66

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LV  + A LP RCV+DGEI++   +GLDFE L QR+HPA SRV  LA  TP SF+AFDLL
Sbjct  67   LVEVLLAALPDRCVLDGEIVVVGPNGLDFEELSQRVHPATSRVAKLALETPVSFVAFDLL  126

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADA----------DLSIHVTPATTDMATAQRWF  170
            ALGD+ +T +PF+ RRA L + + G    A             +++TP+T ++  A++WF
Sbjct  127  ALGDEAFTDQPFARRRAVLEEVLAGHAGPAAPGTAPARRIPSGVYLTPSTGELDMARQWF  186

Query  171  SEFEGAGLDGVIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGL  230
              +EGAGLDG++AKPP   YQPDKR MFKIKH RTADCVVAGYR HK+  +A+GSLLLGL
Sbjct  187  ELYEGAGLDGLVAKPPDGAYQPDKRAMFKIKHDRTADCVVAGYRPHKNDPEAVGSLLLGL  246

Query  231  YQE---------------DGQLASVGVIGAFPMAERRRLLTELQPLVTSFDDHPW-----  270
            Y +               +  L SVGV  AFPMA RR L+ EL  LV   D HPW     
Sbjct  247  YADPADEADPENATDPARESPLLSVGVTSAFPMARRRELVRELAHLVVPIDSHPWARQGP  306

Query  271  NWAAHVAGQ-------------RTPRKNEFSRWNVGKDLSFVPLRPERVVEVRYDRMEGA  317
              AA   G              RTP     SRW  G+DLSFVPLRPE VVEVRYD MEG 
Sbjct  307  ENAAQPGGDAGEEPAAAAGQPARTPWDVGESRWARGRDLSFVPLRPELVVEVRYDHMEGP  366

Query  318  RFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIV  354
            RFRHT QF R+RPDRDP  C+YAQLERP+   ++D++
Sbjct  367  RFRHTTQFVRFRPDRDPGGCTYAQLERPVRFDIADVL  403


>gi|239992053|ref|ZP_04712717.1| ATP-dependent DNA ligase [Streptomyces roseosporus NRRL 11379]
Length=353

 Score =  411 bits (1056),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 208/357 (59%), Positives = 255/357 (72%), Gaps = 6/357 (1%)

Query  1    MQLPVMPPVSPMLAKSVTAIPPDASYEPKWDGFRSICFRDGDQVELGSRNERPMTRYFPE  60
            M LPVMPPV PMLAKSV  IPP  +YE KWDGFR+I +RDGD+VE+GSR  + +TRYFP+
Sbjct  1    MDLPVMPPVKPMLAKSVARIPPGMAYEAKWDGFRAIVYRDGDEVEIGSRTGKSLTRYFPD  60

Query  61   LVAAIRAELPHRCVIDGEIIIATDHGLDFEALQQRIHPAESRVRMLADRTPASFIAFDLL  120
            LV A+R  LP RCVIDGEI+IA +  LDFE L +RIHPA+SRVRMLA++TPASFIAFD+L
Sbjct  61   LVDAVRDNLPPRCVIDGEIVIAHEGRLDFERLSERIHPADSRVRMLAEQTPASFIAFDVL  120

Query  121  ALGDDDYTGRPFSERRAALVDAVTGSGADADLSIHVTPATTDMATAQRWFSEFEGAGLDG  180
            A+ D        +ERR  L  A++G+ A     + + P+TTD+  A++WF  +EGAGLDG
Sbjct  121  AVDDTSLLSTRQAERREVLKAALSGASA----PVLLAPSTTDIEIARQWFDRYEGAGLDG  176

Query  181  VIAKPPHITYQPDKRVMFKIKHLRTADCVVAGYRVHKSGSDAIGSLLLGLYQEDGQLASV  240
            V+AKP  + Y+PD R M+KIKH RTAD VVAGYR HKSG   +GSLLLGLY  +G L  V
Sbjct  177  VVAKPLDLPYRPDTRAMYKIKHERTADVVVAGYREHKSGP-VVGSLLLGLYDTEGVLQHV  235

Query  241  GVIGAFPMAERRRLLTELQPLVTSFDDHPWN-WAAHVAGQRTPRKNEFSRWNVGKDLSFV  299
            GV  AFPM  R  L  EL PL   F +HPW  WA   A +++      +RW+  KD S+V
Sbjct  236  GVCAAFPMKRRAELAEELAPLRCEFAEHPWGAWADAAAHEQSRLPGTQNRWSGKKDQSWV  295

Query  300  PLRPERVVEVRYDRMEGARFRHTAQFNRWRPDRDPRSCSYAQLERPLTVSLSDIVPG  356
            PLRPERV EV YD MEG RFRHT QF RWRPDR P SC+YAQLE  ++  LS+++ G
Sbjct  296  PLRPERVCEVAYDHMEGDRFRHTTQFRRWRPDRSPASCTYAQLEEVVSYDLSEVLSG  352



Lambda     K      H
   0.322    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 666731534350


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40