BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3736 Length=353 Score E Sequences producing significant alignments: (Bits) Value gi|15610872|ref|NP_218253.1| transcriptional regulatory protein ... 708 0.0 gi|121639652|ref|YP_979876.1| AraC/XylS family transcriptional r... 707 0.0 gi|289755867|ref|ZP_06515245.1| transcriptional regulatory prote... 705 0.0 gi|340628710|ref|YP_004747162.1| transcriptional regulatory prot... 704 0.0 gi|308232552|ref|ZP_07416433.2| transcriptional regulator, araC/... 703 0.0 gi|289571981|ref|ZP_06452208.1| transcriptional regulator, araC/... 702 0.0 gi|339300146|gb|AEJ52256.1| transcriptional regulatory protein A... 701 0.0 gi|289441174|ref|ZP_06430918.1| transcriptional regulator, araC/... 590 9e-167 gi|240172318|ref|ZP_04750977.1| AraC family transcriptional regu... 513 1e-143 gi|183985244|ref|YP_001853535.1| AraC/XylS family transcriptiona... 496 2e-138 gi|118619491|ref|YP_907823.1| AraC/XylS family transcriptional r... 491 5e-137 gi|333990278|ref|YP_004522892.1| AraC/XylS family transcriptiona... 396 3e-108 gi|183983310|ref|YP_001851601.1| AraC/XylS family transcriptiona... 375 9e-102 gi|169631076|ref|YP_001704725.1| transcriptional regulatory prot... 321 1e-85 gi|145226090|ref|YP_001136744.1| AraC/XylS family transcriptiona... 277 2e-72 gi|311743721|ref|ZP_07717527.1| AraC family transcriptional regu... 212 6e-53 gi|15610219|ref|NP_217598.1| virulence-regulating transcriptiona... 186 6e-45 gi|253797818|ref|YP_003030819.1| araC/xylS-family virulence-regu... 186 7e-45 gi|15842652|ref|NP_337689.1| AraC family transcriptional regulat... 185 8e-45 gi|340628073|ref|YP_004746525.1| virulence-regulating transcript... 184 1e-44 gi|289444645|ref|ZP_06434389.1| araC/xylS-family virulence-regul... 183 3e-44 gi|31794261|ref|NP_856754.1| virulence-regulating transcriptiona... 182 7e-44 gi|161520218|ref|YP_001583645.1| AraC family transcriptional reg... 181 2e-43 gi|221209501|ref|ZP_03582482.1| transcriptional regulator, AraC ... 180 3e-43 gi|296916|emb|CAA48342.1| 38K [Mycobacterium tuberculosis H37Rv] 180 3e-43 gi|226363594|ref|YP_002781376.1| AraC family transcriptional reg... 179 8e-43 gi|73538979|ref|YP_299346.1| AraC family transcriptional regulat... 178 1e-42 gi|332534194|ref|ZP_08410041.1| putative transcriptional regulat... 175 1e-41 gi|299532411|ref|ZP_07045803.1| helix-turn-helix domain-containi... 173 4e-41 gi|94314148|ref|YP_587357.1| AraC family transcriptional regulat... 173 5e-41 gi|335420252|ref|ZP_08551290.1| araC/xylS-family virulence-regul... 170 3e-40 gi|119468607|ref|ZP_01611659.1| putative transcriptional regulat... 169 9e-40 gi|84498618|ref|ZP_00997381.1| putative transcriptional regulato... 167 2e-39 gi|221066563|ref|ZP_03542668.1| transcriptional regulator, AraC ... 167 3e-39 gi|325000154|ref|ZP_08121266.1| putative transcriptional regulat... 166 6e-39 gi|77362173|ref|YP_341747.1| AraC family transcriptional regulat... 161 2e-37 gi|289571287|ref|ZP_06451514.1| LOW QUALITY PROTEIN: araC/xylS-f... 158 1e-36 gi|315123262|ref|YP_004065268.1| AraC family transcriptional reg... 155 7e-36 gi|54023095|ref|YP_117337.1| putative transcriptional regulator ... 152 6e-35 gi|337281218|ref|YP_004620690.1| AraC family transcriptional reg... 149 5e-34 gi|78062048|ref|YP_371956.1| AraC family transcriptional regulat... 149 9e-34 gi|134100828|ref|YP_001106489.1| putative transcriptional regula... 148 1e-33 gi|157369419|ref|YP_001477408.1| AraC family transcriptional reg... 148 1e-33 gi|264680481|ref|YP_003280391.1| AraC family transcriptional reg... 145 8e-33 gi|311105554|ref|YP_003978407.1| AraC family transcriptional reg... 145 1e-32 gi|226363050|ref|YP_002780832.1| AraC family transcriptional reg... 144 2e-32 gi|221064904|ref|ZP_03541009.1| transcriptional regulator, AraC ... 144 3e-32 gi|94500673|ref|ZP_01307203.1| transcriptional regulator, AraC f... 142 7e-32 gi|77458986|ref|YP_348492.1| AraC family transcriptional regulat... 141 1e-31 gi|111020773|ref|YP_703745.1| AraC family transcriptional regula... 140 4e-31 >gi|15610872|ref|NP_218253.1| transcriptional regulatory protein AraC/XylS-family [Mycobacterium tuberculosis H37Rv] gi|15843357|ref|NP_338394.1| AraC family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|31794908|ref|NP_857401.1| transcriptional regulatory protein AraC/XylS-family [Mycobacterium bovis AF2122/97] 38 more sequence titles Length=353 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/353 (100%), Positives = 353/353 (100%), Gaps = 0/353 (0%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT Sbjct 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR Sbjct 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 Query 121 SFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 SFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF Sbjct 121 SFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 Query 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL 240 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL Sbjct 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL 240 Query 241 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAR 300 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAR Sbjct 241 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAR 300 Query 301 ELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC 353 ELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC Sbjct 301 ELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC 353 >gi|121639652|ref|YP_979876.1| AraC/XylS family transcriptional regulator [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224992148|ref|YP_002646837.1| transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|121495300|emb|CAL73786.1| Transcriptional regulatory protein (probably araC/xylS-family) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224775263|dbj|BAH28069.1| transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|341603673|emb|CCC66354.1| Transcriptional regulatory protein (probably araC/xylS-family) [Mycobacterium bovis BCG str. Moreau RDJ] Length=353 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/353 (99%), Positives = 353/353 (100%), Gaps = 0/353 (0%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT Sbjct 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 ATMDFGRRLAQRQGI+ILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR Sbjct 61 ATMDFGRRLAQRQGIKILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 Query 121 SFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 SFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF Sbjct 121 SFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 Query 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL 240 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL Sbjct 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL 240 Query 241 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAR 300 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAR Sbjct 241 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAR 300 Query 301 ELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC 353 ELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC Sbjct 301 ELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC 353 >gi|289755867|ref|ZP_06515245.1| transcriptional regulatory protein AraC/XylS-family [Mycobacterium tuberculosis EAS054] gi|289696454|gb|EFD63883.1| transcriptional regulatory protein AraC/XylS-family [Mycobacterium tuberculosis EAS054] Length=353 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/353 (99%), Positives = 352/353 (99%), Gaps = 0/353 (0%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT Sbjct 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR Sbjct 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 Query 121 SFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 SFIALEFLLDEPASYPQTMELAL VALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF Sbjct 121 SFIALEFLLDEPASYPQTMELALRVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 Query 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL 240 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL Sbjct 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL 240 Query 241 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAR 300 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAR Sbjct 241 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAR 300 Query 301 ELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC 353 ELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC Sbjct 301 ELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC 353 >gi|340628710|ref|YP_004747162.1| transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] gi|340006900|emb|CCC46089.1| transcriptional regulatory protein (probably ARAC/XYLS-family) [Mycobacterium canettii CIPT 140010059] Length=353 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/353 (99%), Positives = 351/353 (99%), Gaps = 0/353 (0%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT Sbjct 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR Sbjct 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 Query 121 SFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 SFIALEFLLDEPA YPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF Sbjct 121 SFIALEFLLDEPAPYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 Query 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL 240 GCRPYFAERVGGFTMRTADLSRPLN DDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL Sbjct 181 GCRPYFAERVGGFTMRTADLSRPLNHDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL 240 Query 241 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAR 300 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAR Sbjct 241 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAR 300 Query 301 ELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC 353 ELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC Sbjct 301 ELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC 353 >gi|308232552|ref|ZP_07416433.2| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis SUMu001] gi|308369217|ref|ZP_07416965.2| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis SUMu002] gi|308371439|ref|ZP_07424972.2| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis SUMu003] 23 more sequence titles Length=351 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/351 (99%), Positives = 351/351 (100%), Gaps = 0/351 (0%) Query 3 VVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTAT 62 +VRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTAT Sbjct 1 MVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTAT 60 Query 63 MDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQRSF 122 MDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQRSF Sbjct 61 MDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQRSF 120 Query 123 IALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYFGC 182 IALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYFGC Sbjct 121 IALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYFGC 180 Query 183 RPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLLPT 242 RPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLLPT Sbjct 181 RPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLLPT 240 Query 243 GAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAREL 302 GAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAREL Sbjct 241 GAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAREL 300 Query 303 GYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC 353 GYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC Sbjct 301 GYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC 351 >gi|289571981|ref|ZP_06452208.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis T17] gi|289748256|ref|ZP_06507634.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis T92] gi|289545735|gb|EFD49383.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis T17] gi|289688843|gb|EFD56272.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis T92] Length=353 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/353 (99%), Positives = 351/353 (99%), Gaps = 0/353 (0%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT Sbjct 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR Sbjct 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 Query 121 SFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 SFIALEFLLDEPASYPQTMELAL VALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF Sbjct 121 SFIALEFLLDEPASYPQTMELALRVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 Query 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL 240 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL Sbjct 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL 240 Query 241 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAR 300 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLT LAR Sbjct 241 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTRLAR 300 Query 301 ELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC 353 ELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC Sbjct 301 ELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC 353 >gi|339300146|gb|AEJ52256.1| transcriptional regulatory protein AraC/XylS-family [Mycobacterium tuberculosis CCDC5180] Length=351 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/351 (99%), Positives = 350/351 (99%), Gaps = 0/351 (0%) Query 3 VVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTAT 62 +VRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTAT Sbjct 1 MVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTAT 60 Query 63 MDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQRSF 122 MDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQRSF Sbjct 61 MDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQRSF 120 Query 123 IALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYFGC 182 IALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPL VHLPHDPLTPEAFYLQYFGC Sbjct 121 IALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLTVHLPHDPLTPEAFYLQYFGC 180 Query 183 RPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLLPT 242 RPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLLPT Sbjct 181 RPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLLPT 240 Query 243 GAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAREL 302 GAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAREL Sbjct 241 GAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAREL 300 Query 303 GYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC 353 GYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC Sbjct 301 GYAEQSVLTRSCKRWFGTGPAAYRNQARLQTTVSAPGSGRGPNPGNVSVSC 351 >gi|289441174|ref|ZP_06430918.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis T46] gi|289414093|gb|EFD11333.1| transcriptional regulator, araC/xylS-family [Mycobacterium tuberculosis T46] Length=335 Score = 590 bits (1522), Expect = 9e-167, Method: Compositional matrix adjust. Identities = 300/303 (99%), Positives = 300/303 (99%), Gaps = 0/303 (0%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT Sbjct 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR Sbjct 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 Query 121 SFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 SFIALEFLLDEPASYPQTMELAL VALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF Sbjct 121 SFIALEFLLDEPASYPQTMELALRVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 Query 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL 240 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL Sbjct 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQLL 240 Query 241 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLAR 300 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLT LAR Sbjct 241 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTRLAR 300 Query 301 ELG 303 E G Sbjct 301 EPG 303 >gi|240172318|ref|ZP_04750977.1| AraC family transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length=338 Score = 513 bits (1322), Expect = 1e-143, Method: Compositional matrix adjust. Identities = 267/332 (81%), Positives = 291/332 (88%), Gaps = 1/332 (0%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 MSVVRGT L+NYP LVA LGGDPA+LLRA G+RD+DVGNYDAFI RAAIRA+ESAA T Sbjct 1 MSVVRGTGLSNYPKLVAELGGDPASLLRAVGIRDRDVGNYDAFIPFRAAIRAMESAAEAT 60 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA-GQ 119 AT DFGRRLA+RQ IEILGPVGVAARTAATV DAL+IFNTFM+AYSPVI I+IT A Q Sbjct 61 ATPDFGRRLARRQSIEILGPVGVAARTAATVADALSIFNTFMSAYSPVIRIQITSSADAQ 120 Query 120 RSFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQY 179 RSFI ++FLLDE PQT+ELALGV+LGV+RLL+GADYAPLAVH+ HDP+T A Y QY Sbjct 121 RSFIGIQFLLDEAIPCPQTLELALGVSLGVLRLLMGADYAPLAVHVSHDPVTAPADYAQY 180 Query 180 FGCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQL 239 FGC PYFAER GFT+RTADLSRPLNRDDVAHR VVDYLSSITPLG GIVESVR IVRQL Sbjct 181 FGCTPYFAERRSGFTVRTADLSRPLNRDDVAHRAVVDYLSSITPLGAGIVESVRAIVRQL 240 Query 240 LPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLA 299 LPTGAATL++VAEQFHLHPKTLQRRLA E TTF +LVD+VRKD ADRYLRTTGI L+HL Sbjct 241 LPTGAATLDLVAEQFHLHPKTLQRRLAHEGTTFAVLVDQVRKDTADRYLRTTGISLSHLT 300 Query 300 RELGYAEQSVLTRSCKRWFGTGPAAYRNQARL 331 ELGYAEQSVLTRSCKRWFG GPAAYRN+ RL Sbjct 301 TELGYAEQSVLTRSCKRWFGAGPAAYRNRTRL 332 >gi|183985244|ref|YP_001853535.1| AraC/XylS family transcriptional regulator [Mycobacterium marinum M] gi|183178570|gb|ACC43680.1| transcriptional regulatory protein (probably AraC/XylS-family) [Mycobacterium marinum M] Length=339 Score = 496 bits (1278), Expect = 2e-138, Method: Compositional matrix adjust. Identities = 255/335 (77%), Positives = 288/335 (86%), Gaps = 1/335 (0%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 MSVVRGT L+NYP+LV+ LGGDPA LLRAAGVR+QDVGNYDAFI +RA IRAIE+AAA T Sbjct 1 MSVVRGTGLSNYPNLVSELGGDPAALLRAAGVREQDVGNYDAFIPVRAVIRAIETAAAAT 60 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAG-Q 119 T DFGR+LAQRQGIEILGPVGVAARTAATV DAL IF+TFMAAYSP I I ITPLA Q Sbjct 61 GTHDFGRQLAQRQGIEILGPVGVAARTAATVADALMIFHTFMAAYSPAIHIEITPLAHTQ 120 Query 120 RSFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQY 179 RSF+A+E + D+P P T+ELALGV+LGV RLL+GADY PLAVHLPHDPLTP Y++Y Sbjct 121 RSFVAIEIVPDDPIPCPHTLELALGVSLGVFRLLMGADYTPLAVHLPHDPLTPPTTYVRY 180 Query 180 FGCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQL 239 F C P+FAER GFT+R+ DL RPL+RD++AHR VVDYLSSITPLG GIVESVRT+ RQL Sbjct 181 FECTPHFAERRSGFTVRSTDLVRPLHRDELAHRAVVDYLSSITPLGAGIVESVRTMARQL 240 Query 240 LPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLA 299 LPTGAATL VVA QFHLHPKTLQRRLA+E+TTF L+D VRK+ ADRYLRTT + L+HLA Sbjct 241 LPTGAATLEVVAAQFHLHPKTLQRRLADESTTFAALIDEVRKETADRYLRTTAMSLSHLA 300 Query 300 RELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTT 334 RELGYAEQSVLTRSCKRWFG GPAAYR + R++ T Sbjct 301 RELGYAEQSVLTRSCKRWFGIGPAAYRAKTRVRAT 335 >gi|118619491|ref|YP_907823.1| AraC/XylS family transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118571601|gb|ABL06352.1| transcriptional regulatory protein (probably AraC/XylS-family) [Mycobacterium ulcerans Agy99] Length=339 Score = 491 bits (1265), Expect = 5e-137, Method: Compositional matrix adjust. Identities = 253/335 (76%), Positives = 286/335 (86%), Gaps = 1/335 (0%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 MSVVRGT L+NYP+LV+ LGGDPA LLRAAGVR+QDVGNYDAFI +RA IRAIE+AAA T Sbjct 1 MSVVRGTGLSNYPNLVSELGGDPAALLRAAGVREQDVGNYDAFIPVRAVIRAIETAAAAT 60 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA-GQ 119 T DFGR+LAQRQGIEILGPVGVAARTAATV DAL IF+TFMAAYSP I I ITPLA Q Sbjct 61 GTHDFGRQLAQRQGIEILGPVGVAARTAATVADALMIFHTFMAAYSPAIHIEITPLARTQ 120 Query 120 RSFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQY 179 RS +A+E + D+P P T+ELALGV+LGV RLL+GADY PLAVHLPHDPLTP Y++Y Sbjct 121 RSVVAIEIVPDDPIPCPHTLELALGVSLGVFRLLMGADYTPLAVHLPHDPLTPPTTYVRY 180 Query 180 FGCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQL 239 F C P+FAER GFT+R+ DL RPL+RD++AHR VVDYLSSITPLG GIVESVRT+ RQL Sbjct 181 FECTPHFAERRSGFTVRSTDLVRPLHRDELAHRAVVDYLSSITPLGAGIVESVRTMARQL 240 Query 240 LPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLA 299 LPTGA TL VVA QFHLHPKTLQRRLA+E+TTF L+D VRK+ ADRYLRTT + L+HLA Sbjct 241 LPTGATTLEVVAAQFHLHPKTLQRRLADESTTFAALIDEVRKETADRYLRTTAMSLSHLA 300 Query 300 RELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQTT 334 RELGYAEQSVLTRSCKRWFG GPAAYR + R++ T Sbjct 301 RELGYAEQSVLTRSCKRWFGIGPAAYRAKTRVRAT 335 >gi|333990278|ref|YP_004522892.1| AraC/XylS family transcriptional regulator [Mycobacterium sp. JDM601] gi|333486246|gb|AEF35638.1| AraC/XylS family transcriptional regulator [Mycobacterium sp. JDM601] Length=332 Score = 396 bits (1017), Expect = 3e-108, Method: Compositional matrix adjust. Identities = 200/331 (61%), Positives = 240/331 (73%), Gaps = 1/331 (0%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 MSVVRGTAL+ YP LVA LGGDPA LL AAGV G ++ F+ RA I AIE AA Sbjct 1 MSVVRGTALSGYPELVAELGGDPAALLAAAGVPSGAAGTHELFVPYRAVILAIEGAANAV 60 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA-GQ 119 DFGRRLA RQ I+I GP+GVAARTAATVG +I FM+AYSP I+ RITP A Sbjct 61 DCPDFGRRLALRQDIDIFGPLGVAARTAATVGGGFSIVERFMSAYSPAISARITPGAKSS 120 Query 120 RSFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQY 179 SF A + LL+ +PQT EL+LGV+LG++R++ + YAPL+VHLPH+PLTP YL Y Sbjct 121 ESFYAFDVLLERSPPHPQTTELSLGVSLGIMRMMFDSPYAPLSVHLPHEPLTPVREYLAY 180 Query 180 FGCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIVESVRTIVRQL 239 FGCRPYFA+ V GFT RTADL+RPL+RDD AH+ +V YL ++T GI SVR + RQL Sbjct 181 FGCRPYFAQPVAGFTFRTADLNRPLHRDDQAHQAMVHYLRAMTDESPGIAASVRVMARQL 240 Query 240 LPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLA 299 LPTG +L ++A++ LHPK L RRLA E TTF LVD VR+D ADRYLR T I L+HLA Sbjct 241 LPTGTVSLELIADELGLHPKALHRRLAAEQTTFAALVDGVRRDAADRYLRDTDISLSHLA 300 Query 300 RELGYAEQSVLTRSCKRWFGTGPAAYRNQAR 330 RELGYAEQSVL+RSC+RWFG ++YR R Sbjct 301 RELGYAEQSVLSRSCRRWFGCSASSYRKAVR 331 >gi|183983310|ref|YP_001851601.1| AraC/XylS family transcriptional regulator [Mycobacterium marinum M] gi|183176636|gb|ACC41746.1| transcriptional regulatory protein (probably AraC/XylS-family) [Mycobacterium marinum M] Length=344 Score = 375 bits (962), Expect = 9e-102, Method: Compositional matrix adjust. Identities = 190/330 (58%), Positives = 240/330 (73%), Gaps = 2/330 (0%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 MSV+RGTAL YP+LV+ LG DP LL AGV+ DVG +DAFI+ A I A+ESAAAVT Sbjct 1 MSVIRGTALTGYPALVSELGADPEALLARAGVKRSDVGRFDAFITYLALIHAVESAAAVT 60 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRIT-PLAGQ 119 T DFGRRLA+RQGIEILGPVGVAART+ +V +AL F ++AAYSP IA ++ G+ Sbjct 61 KTPDFGRRLAERQGIEILGPVGVAARTSKSVAEALDTFEHYLAAYSPAIAATMSREPGGE 120 Query 120 RSFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQY 179 SF+ + L+ P ++PQT EL+LGV L V+R LLGA YAP V LPH LTP YL+Y Sbjct 121 ASFLEFKILIAHPPAHPQTTELSLGVMLRVLRFLLGAGYAPTVVDLPHPALTPREDYLRY 180 Query 180 FGCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGE-GIVESVRTIVRQ 238 F C P F GGF + + DL RPL RD++AHRVV++YL ++ + S+R ++RQ Sbjct 181 FACTPRFGSHRGGFRLPSEDLQRPLVRDELAHRVVLEYLDTVIDRQRPTMASSIRELIRQ 240 Query 239 LLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHL 298 LLPTGAAT+ V+A+QF LHPK L+RRLA E T F +VD VR++V +RYLR + + LTHL Sbjct 241 LLPTGAATVPVIADQFRLHPKALRRRLAAEGTNFNAVVDDVRREVTERYLRDSDMTLTHL 300 Query 299 ARELGYAEQSVLTRSCKRWFGTGPAAYRNQ 328 AR+LGYAEQSVL+RSC+RWFG PA+ R Q Sbjct 301 ARQLGYAEQSVLSRSCQRWFGASPASLRAQ 330 >gi|169631076|ref|YP_001704725.1| transcriptional regulatory protein [Mycobacterium abscessus ATCC 19977] gi|169243043|emb|CAM64071.1| Probable transcriptional regulatory protein [Mycobacterium abscessus] Length=334 Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 178/338 (53%), Positives = 226/338 (67%), Gaps = 14/338 (4%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 M+V+RG+AL NY LVA LGGD + LL A V D G+Y+ FIS+ RA+E+ AA Sbjct 1 MAVIRGSALTNYHELVAELGGDGSRLLAGARVSPTDAGSYERFISLPNGARALEATAAAL 60 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRIT----PL 116 DFGR+LA+RQGIEILGPVG+AARTAATV DA AI FM AY PVI+ R+T P Sbjct 61 NAPDFGRQLARRQGIEILGPVGLAARTAATVADAFAILEKFMGAYCPVISARVTDHRDPA 120 Query 117 AGQRSFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFY 176 + F E+LL+ Q +EL+LGV L V+ LGA Y P++VHLPH LTP + Y Sbjct 121 LCRFEF---EYLLNPAPPQAQAVELSLGVTLRVLHHFLGAGYRPVSVHLPHQALTPASAY 177 Query 177 LQYFGCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLS----SITPLGEGIVESV 232 +YFGC P+F E VGGFT+R D+ + L +D++AH+ VDYL+ S P + V Sbjct 178 QRYFGCPPFFCEPVGGFTLRATDMQKALPKDNLAHQTAVDYLTGTHASRKPDSSQL---V 234 Query 233 RTIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTG 292 R ++RQLLPTGA L +A +HPKTLQRRL E TF LVD++R++ A+R L T Sbjct 235 RILIRQLLPTGAIGLGDIALHLGVHPKTLQRRLRAEGMTFAELVDQIRREAAERLLSDTD 294 Query 293 IGLTHLARELGYAEQSVLTRSCKRWFGTGPAAYRNQAR 330 + L HL+R+LGYAEQSV TRSCKRWFGT P+AYR+ R Sbjct 295 LSLDHLSRQLGYAEQSVFTRSCKRWFGTTPSAYRSDRR 332 >gi|145226090|ref|YP_001136744.1| AraC/XylS family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145218553|gb|ABP47956.1| transcriptional regulator, AraC family [Mycobacterium gilvum PYR-GCK] Length=309 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 153/299 (52%), Positives = 193/299 (65%), Gaps = 2/299 (0%) Query 3 VVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTAT 62 ++RGTAL + LV LGGD L+ A + D+G +D FIS+ R +E+AA + T Sbjct 1 MIRGTALTGFHELVTELGGDSHILVADAHIPFNDIGRHDRFISLPNGARLLENAADILDT 60 Query 63 MDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITP-LAGQRS 121 DF RRLA+RQGIEILGPVG+A R+AATV +A IF+ FMAAYSP I+ R+T L Sbjct 61 PDFARRLARRQGIEILGPVGLAGRSAATVAEAFTIFDKFMAAYSPSISARVTAHLDPDLR 120 Query 122 FIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYFG 181 E+LL+ P Q +EL+LGV L V+RL LGA Y P+AVHLPH L P Y YFG Sbjct 121 RFEFEYLLNPPPPQAQAIELSLGVTLRVLRLFLGAAYRPVAVHLPHPALGPADDYDTYFG 180 Query 182 CRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLS-SITPLGEGIVESVRTIVRQLL 240 C P F E V GFT+RTADL +PL +D +AH+ +DYL+ ++ + VRT+VRQLL Sbjct 181 CPPGFCEHVAGFTVRTADLQQPLPKDRLAHQTAIDYLADTVGDYTPATSQLVRTLVRQLL 240 Query 241 PTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLA 299 PTGA L +A LHPK LQRRLA ENTT+ LVD+ R+D A R L T + L LA Sbjct 241 PTGAVGLPDIARHIGLHPKALQRRLAAENTTYAELVDQTRRDTAQRLLLDTALSLDQLA 299 >gi|311743721|ref|ZP_07717527.1| AraC family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311312851|gb|EFQ82762.1| AraC family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length=343 Score = 212 bits (540), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 127/332 (39%), Positives = 187/332 (57%), Gaps = 14/332 (4%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTA 61 S++R +AL Y LV LGGDPA L G+ + F+S+R +R +E+ AA Sbjct 12 SLLRASALWGYDELVTQLGGDPAALRSRFGIEPGVETQPEGFVSVRGYVRLLETTAAELD 71 Query 62 TMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQRS 121 D G RL+ QG+++LGPV V AR TV +AL ++ A+SP A+R+ AG+ Sbjct 72 CPDLGLRLSGWQGLDMLGPVAVIARNNPTVQEALGAIARYLYAHSP--ALRMEAFAGEGP 129 Query 122 FIALEFLLDEP--ASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQY 179 + E+ +DEP Q+ E+++G+ + ++RLL G+ P+AV H P+A Y + Sbjct 130 HLRFEYEVDEPFLDDLRQSYEVSMGIVVQILRLLGGS--GPIAVSFTHQQTAPDAAYERV 187 Query 180 FGCRPYFAERVGGFTMRTADLSRPLNRDDVAH----RVVVDYLSSITPLGEG-IVESVRT 234 GC F + GF + +RP+ D AH R+ V YL S P+G + E Sbjct 188 LGCPVRFGQAWCGFEVSPELAARPI---DTAHPETQRIAVMYLESRYPVGTATLAERTSE 244 Query 235 IVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIG 294 + R+LL TG+ T++ +A+Q +LHP+TLQR+LA E L++ RKD A YL G+ Sbjct 245 LARRLLMTGSCTIDSIADQLNLHPRTLQRQLAREGVRCQDLIESARKDQAAHYLAQPGLH 304 Query 295 LTHLARELGYAEQSVLTRSCKRWFGTGPAAYR 326 L+ +A LGYAEQS L RSC+RWFG P+ R Sbjct 305 LSQVAALLGYAEQSSLNRSCRRWFGQTPSQVR 336 >gi|15610219|ref|NP_217598.1| virulence-regulating transcriptional regulator VirS [Mycobacterium tuberculosis H37Rv] gi|148662936|ref|YP_001284459.1| AraC family transcription regulator [Mycobacterium tuberculosis H37Ra] gi|148824274|ref|YP_001289028.1| virulence-regulating transcriptional regulator VirS [Mycobacterium tuberculosis F11] 53 more sequence titles Length=340 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 123/333 (37%), Positives = 172/333 (52%), Gaps = 13/333 (3%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLR----AAGVRDQDVGNYDAFISIRAAIRAIESAA 57 S++R T L Y L+ LG DP LR G+ Q+ DAF+S+ +R +E++A Sbjct 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASA 60 Query 58 AVTATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA 117 A DFG RLA+ QG+ ILGPV V AR AAT+ L ++ +SP + + ++ Sbjct 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120 Query 118 GQRSFIALEFLLDEPA-SYP-QTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAF 175 RS + + + EP YP Q EL++ A +IRLL G H L +A Sbjct 121 A-RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAA 179 Query 176 YLQYFGCRPYFAERVGGFTMRTADLSRPLNR-DDVAHRVVVDYLSS-ITPLGEGIVESVR 233 Y + GC F GF + RP++ D R+ YL S P + E V Sbjct 180 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVV 239 Query 234 TIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGI 293 + R+LLPTG + +A+Q +HP+TLQRRLA E L++R R+ A RYL G+ Sbjct 240 GLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGL 299 Query 294 GLTHLARELGYAEQSVLTRSCKRWFGTGPAAYR 326 L+ +A LGY+EQS L RSC+RWFG P YR Sbjct 300 YLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332 >gi|253797818|ref|YP_003030819.1| araC/xylS-family virulence-regulating transcriptional regulator virS [Mycobacterium tuberculosis KZN 1435] gi|289553127|ref|ZP_06442337.1| araC/xylS-family virulence-regulating transcriptional regulator virS [Mycobacterium tuberculosis KZN 605] gi|289746891|ref|ZP_06506269.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|253319321|gb|ACT23924.1| araC/xylS-family virulence-regulating transcriptional regulator virS [Mycobacterium tuberculosis KZN 1435] gi|289437759|gb|EFD20252.1| araC/xylS-family virulence-regulating transcriptional regulator virS [Mycobacterium tuberculosis KZN 605] gi|289687419|gb|EFD54907.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|328457597|gb|AEB03020.1| araC/xylS-family virulence-regulating transcriptional regulator virS [Mycobacterium tuberculosis KZN 4207] Length=341 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 123/333 (37%), Positives = 172/333 (52%), Gaps = 13/333 (3%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLR----AAGVRDQDVGNYDAFISIRAAIRAIESAA 57 S++R T L Y L+ LG DP LR G+ Q+ DAF+S+ +R +E++A Sbjct 6 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASA 61 Query 58 AVTATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA 117 A DFG RLA+ QG+ ILGPV V AR AAT+ L ++ +SP + + ++ Sbjct 62 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 121 Query 118 GQRSFIALEFLLDEPA-SYP-QTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAF 175 RS + + + EP YP Q EL++ A +IRLL G H L +A Sbjct 122 A-RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAA 180 Query 176 YLQYFGCRPYFAERVGGFTMRTADLSRPLNR-DDVAHRVVVDYLSS-ITPLGEGIVESVR 233 Y + GC F GF + RP++ D R+ YL S P + E V Sbjct 181 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVV 240 Query 234 TIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGI 293 + R+LLPTG + +A+Q +HP+TLQRRLA E L++R R+ A RYL G+ Sbjct 241 GLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGL 300 Query 294 GLTHLARELGYAEQSVLTRSCKRWFGTGPAAYR 326 L+ +A LGY+EQS L RSC+RWFG P YR Sbjct 301 YLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 333 >gi|15842652|ref|NP_337689.1| AraC family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|13882970|gb|AAK47503.1| transcriptional regulator, AraC family [Mycobacterium tuberculosis CDC1551] Length=352 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 123/333 (37%), Positives = 172/333 (52%), Gaps = 13/333 (3%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLR----AAGVRDQDVGNYDAFISIRAAIRAIESAA 57 S++R T L Y L+ LG DP LR G+ Q+ DAF+S+ +R +E++A Sbjct 17 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASA 72 Query 58 AVTATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA 117 A DFG RLA+ QG+ ILGPV V AR AAT+ L ++ +SP + + ++ Sbjct 73 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 132 Query 118 GQRSFIALEFLLDEPA-SYP-QTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAF 175 RS + + + EP YP Q EL++ A +IRLL G H L +A Sbjct 133 A-RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAA 191 Query 176 YLQYFGCRPYFAERVGGFTMRTADLSRPLNR-DDVAHRVVVDYLSS-ITPLGEGIVESVR 233 Y + GC F GF + RP++ D R+ YL S P + E V Sbjct 192 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVV 251 Query 234 TIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGI 293 + R+LLPTG + +A+Q +HP+TLQRRLA E L++R R+ A RYL G+ Sbjct 252 GLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGL 311 Query 294 GLTHLARELGYAEQSVLTRSCKRWFGTGPAAYR 326 L+ +A LGY+EQS L RSC+RWFG P YR Sbjct 312 YLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 344 >gi|340628073|ref|YP_004746525.1| virulence-regulating transcriptional regulator [Mycobacterium canettii CIPT 140010059] gi|340006263|emb|CCC45439.1| virulence-regulating transcriptional regulator VIRS (ARAC/XYLS family) [Mycobacterium canettii CIPT 140010059] Length=340 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 122/333 (37%), Positives = 171/333 (52%), Gaps = 13/333 (3%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLR----AAGVRDQDVGNYDAFISIRAAIRAIESAA 57 S++R T L Y L+ LG DP LR G+ Q+ DAF+S+ +R +E++A Sbjct 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASA 60 Query 58 AVTATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA 117 A DFG RLA+ QG+ ILGPV V AR AAT+ L ++ +SP + + ++ Sbjct 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120 Query 118 GQRSFIALEFLLDEPA-SYP-QTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAF 175 RS + + + EP YP Q EL++ A +IRLL G H L +A Sbjct 121 A-RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAA 179 Query 176 YLQYFGCRPYFAERVGGFTMRTADLSRPLNR-DDVAHRVVVDYLSS-ITPLGEGIVESVR 233 Y + GC F GF + RP++ D R+ YL S P + E V Sbjct 180 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVV 239 Query 234 TIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGI 293 + R+LLPTG + +A+Q +HP+TLQRRLA E L++R R+ A RY G+ Sbjct 240 GLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYFAQPGL 299 Query 294 GLTHLARELGYAEQSVLTRSCKRWFGTGPAAYR 326 L+ +A LGY+EQS L RSC+RWFG P YR Sbjct 300 YLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332 >gi|289444645|ref|ZP_06434389.1| araC/xylS-family virulence-regulating transcriptional regulator virS [Mycobacterium tuberculosis T46] gi|289751756|ref|ZP_06511134.1| araC/xylS-family virulence-regulating transcriptional regulator virS [Mycobacterium tuberculosis T92] gi|289755199|ref|ZP_06514577.1| virulence-regulating transcriptional regulator virs [Mycobacterium tuberculosis EAS054] gi|289417564|gb|EFD14804.1| araC/xylS-family virulence-regulating transcriptional regulator virS [Mycobacterium tuberculosis T46] gi|289692343|gb|EFD59772.1| araC/xylS-family virulence-regulating transcriptional regulator virS [Mycobacterium tuberculosis T92] gi|289695786|gb|EFD63215.1| virulence-regulating transcriptional regulator virs [Mycobacterium tuberculosis EAS054] Length=340 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 122/333 (37%), Positives = 171/333 (52%), Gaps = 13/333 (3%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLR----AAGVRDQDVGNYDAFISIRAAIRAIESAA 57 S++R T L Y L+ LG DP LR G+ Q+ DAF+S+ +R +E++A Sbjct 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASA 60 Query 58 AVTATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA 117 A DFG RLA+ QG+ ILGPV V AR AAT+ L ++ +SP + + ++ Sbjct 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120 Query 118 GQRSFIALEFLLDEPA-SYP-QTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAF 175 RS + + + EP YP Q EL++ A +IRLL G H L +A Sbjct 121 A-RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAA 179 Query 176 YLQYFGCRPYFAERVGGFTMRTADLSRPLNR-DDVAHRVVVDYLSS-ITPLGEGIVESVR 233 Y + GC F GF + RP++ D R+ YL S P + E V Sbjct 180 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVV 239 Query 234 TIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGI 293 + R+LLPTG + +A+Q +HP+TLQRRLA E L++R R+ A RYL G+ Sbjct 240 GLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGL 299 Query 294 GLTHLARELGYAEQSVLTRSCKRWFGTGPAAYR 326 L+ +A LGY+EQS RSC+RWFG P YR Sbjct 300 YLSQIAVLLGYSEQSARNRSCRRWFGMTPRQYR 332 >gi|31794261|ref|NP_856754.1| virulence-regulating transcriptional regulator VirS [Mycobacterium bovis AF2122/97] gi|121638967|ref|YP_979191.1| virulence-regulating transcriptional regulator VirS [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991459|ref|YP_002646148.1| virulence-regulating transcriptional regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|31619856|emb|CAD96796.1| VIRULENCE-REGULATING TRANSCRIPTIONAL REGULATOR VIRS (ARAC/XYLS FAMILY) [Mycobacterium bovis AF2122/97] gi|121494615|emb|CAL73096.1| Virulence-regulating transcriptional regulator virS (araC/xylS family) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774574|dbj|BAH27380.1| virulence-regulating transcriptional regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|341603006|emb|CCC65684.1| Virulence-regulating transcriptional regulator virS (araC/xylS family) [Mycobacterium bovis BCG str. Moreau RDJ] Length=340 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 122/333 (37%), Positives = 171/333 (52%), Gaps = 13/333 (3%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLR----AAGVRDQDVGNYDAFISIRAAIRAIESAA 57 S++R T L Y L+ LG DP LR G+ Q+ DAF+S+ +R +E++A Sbjct 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASA 60 Query 58 AVTATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA 117 A DFG RLA+ QG+ ILGPV V AR AAT+ L ++ +SP + + ++ Sbjct 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120 Query 118 GQRSFIALEFLLDEPA-SYP-QTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAF 175 RS + + + EP YP Q EL++ A +IRLL G H L +A Sbjct 121 A-RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAA 179 Query 176 YLQYFGCRPYFAERVGGFTMRTADLSRPLNR-DDVAHRVVVDYLSS-ITPLGEGIVESVR 233 Y + GC F GF + RP++ D R+ YL S P + E V Sbjct 180 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVV 239 Query 234 TIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGI 293 + R+LLPTG + +A+Q +HP+TLQRRLA E L++R R+ A RYL G+ Sbjct 240 GLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGL 299 Query 294 GLTHLARELGYAEQSVLTRSCKRWFGTGPAAYR 326 L+ +A LGY+EQS L RSC+ WFG P YR Sbjct 300 YLSQIAVLLGYSEQSALNRSCRCWFGMTPRQYR 332 >gi|161520218|ref|YP_001583645.1| AraC family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353604|ref|YP_001949231.1| AraC family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160344268|gb|ABX17353.1| transcriptional regulator, AraC family [Burkholderia multivorans ATCC 17616] gi|189337626|dbj|BAG46695.1| AraC family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length=338 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 114/330 (35%), Positives = 172/330 (53%), Gaps = 7/330 (2%) Query 3 VVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTAT 62 ++R + L YP+L+ +G DP LLR + + + D IS+R+A +E++A VT Sbjct 4 LLRASGLRGYPALMRDMGCDPVPLLRRYHITEAALERDDTLISLRSATHLLEASAEVTGC 63 Query 63 MDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITP---LAGQ 119 DFG RL+ Q I++LGP+ V R A T+ DAL ++ +SP I + + L Sbjct 64 GDFGLRLSSYQSIDVLGPLSVVLRNAPTIRDALNDVMRYLFVHSPGIVVSVNERSRLVEN 123 Query 120 RSFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQY 179 +++E L P Q +L L A +RL G YA AV +PH+P+ A Y ++ Sbjct 124 TVAVSVELHLSGPVVTRQNSDLCLADAHNFLRLFAGDRYALQAVSIPHEPVVGRAVYERF 183 Query 180 FGCRPYFAERVGG--FTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEG-IVESVRTIV 236 FG R E VG + R + + H++ DY+ +G + VR ++ Sbjct 184 FGAR-LLEEPVGATLYLARDTFAANVQGANASFHQIAEDYIFRNFGAAQGSTSDRVRQVL 242 Query 237 RQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLT 296 RQ L T +A VA LHP+TLQRRL E T+F IL D VRK +A YLR T + + Sbjct 243 RQTLGTSSADKAGVAAVLALHPRTLQRRLCAEGTSFEILRDDVRKQLAVHYLRNTRLSIG 302 Query 297 HLARELGYAEQSVLTRSCKRWFGTGPAAYR 326 ++ LG+ QS L+R+C++WF P+ R Sbjct 303 QISLMLGFPAQSALSRACRQWFDLTPSEIR 332 >gi|221209501|ref|ZP_03582482.1| transcriptional regulator, AraC family [Burkholderia multivorans CGD1] gi|221170189|gb|EEE02655.1| transcriptional regulator, AraC family [Burkholderia multivorans CGD1] Length=338 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 113/330 (35%), Positives = 172/330 (53%), Gaps = 7/330 (2%) Query 3 VVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTAT 62 ++R + L YP+L+ +G DP LLR + + + D IS+R+A +E++A VT Sbjct 4 LLRASGLRGYPTLMRDMGCDPVPLLRRYHITEAALERDDTLISLRSATHLLEASAEVTGC 63 Query 63 MDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITP---LAGQ 119 DFG RL+ Q I++LGP+ V R A T+ DAL ++ +SP I + + L Sbjct 64 GDFGLRLSSYQSIDVLGPLSVVLRNAPTIRDALNDVMRYLFVHSPGIVVSVNERSRLVEN 123 Query 120 RSFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQY 179 +++E L P Q +L L A +RL G YA AV +PH+P+ A Y ++ Sbjct 124 TVAVSVELHLSGPVVTRQNSDLCLADAHNFLRLFAGDRYALQAVSIPHEPVVGRAVYERF 183 Query 180 FGCRPYFAERVGG--FTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEG-IVESVRTIV 236 FG + E VG + R + + H++ DY+ +G + VR ++ Sbjct 184 FGAK-LLEEPVGATLYLARDTFTANVQGANASFHQIAEDYIFRNFGAAQGSTSDRVRQVL 242 Query 237 RQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLT 296 RQ L T +A VA LHP+TLQRRL E T+F IL D VRK +A YLR T + + Sbjct 243 RQTLGTSSADKAGVAAVLALHPRTLQRRLCAEGTSFEILRDDVRKQLAVHYLRNTRLSIG 302 Query 297 HLARELGYAEQSVLTRSCKRWFGTGPAAYR 326 ++ LG+ QS L+R+C++WF P+ R Sbjct 303 QISLMLGFPAQSALSRACRQWFDLTPSEIR 332 >gi|296916|emb|CAA48342.1| 38K [Mycobacterium tuberculosis H37Rv] Length=339 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 122/333 (37%), Positives = 173/333 (52%), Gaps = 14/333 (4%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLR----AAGVRDQDVGNYDAFISIRAAIRAIESAA 57 S++R T L Y L+ +G DP LR G+ Q+ DAF+S+ +R +E++A Sbjct 5 SLIRATNLWGYTDLMRDVGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASA 60 Query 58 AVTATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA 117 A DFG RLA+ QG+ ILGPV V AR AAT+ L ++ +SP + + ++ Sbjct 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120 Query 118 GQRSFIALEFLLDEPA-SYP-QTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAF 175 RS + + + EP YP Q EL++ A +IRLL G A + H L +A Sbjct 121 A-RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGRSGARV-FSFRHAQLGTDAA 178 Query 176 YLQYFGCRPYFAERVGGFTMRTADLSRPLNR-DDVAHRVVVDYLSS-ITPLGEGIVESVR 233 Y + GC F GF + RP++ D R+ YL S P + E V Sbjct 179 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVV 238 Query 234 TIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGI 293 + R+LLPTG + +A+Q +HP+TLQRRLA E L++R R+ A RYL G+ Sbjct 239 GLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGL 298 Query 294 GLTHLARELGYAEQSVLTRSCKRWFGTGPAAYR 326 L+ +A LGY+EQS RSC+RWFG P YR Sbjct 299 YLSQIAVLLGYSEQSARNRSCRRWFGMTPRQYR 331 >gi|226363594|ref|YP_002781376.1| AraC family transcriptional regulator [Rhodococcus opacus B4] gi|226242083|dbj|BAH52431.1| putative AraC family transcriptional regulator [Rhodococcus opacus B4] Length=335 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 115/328 (36%), Positives = 157/328 (48%), Gaps = 3/328 (0%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTA 61 S++R T L Y L+ LG DP L + DAF+ + ++++A Sbjct 3 SLIRATNLWGYGDLMRELGADPEPFLARFHIPPGVEHEEDAFVPFESVAHVLDASAVDLG 62 Query 62 TMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITP-LAGQR 120 DFG RL+ QG++ILGPV V AR A TV A + +SP + + + P AG Sbjct 63 CPDFGLRLSHWQGLDILGPVAVIARNARTVQGAFEAIARYFYVHSPALKLTVGPRTAGGD 122 Query 121 SFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 E PQ ELA+ + ++RLL G D P + H L +A Y Sbjct 123 VRFVYEMTEQSLRYLPQGYELAMANGVRILRLLGGPDARPSLMSFVHGQLGSDAAYRDAL 182 Query 181 GCRPYFAERVGGFTMRTADLSRPLNR-DDVAHRVVVDYLSS-ITPLGEGIVESVRTIVRQ 238 C F + GF + A R ++ D R+ YL S P + E V + R+ Sbjct 183 DCVVLFGQSWCGFELPRALADRRIDSADPETRRIATKYLESHYLPSTAALSERVAELARR 242 Query 239 LLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHL 298 LLPTG + +A+Q +HP+TLQRRLAEE L++R R+ A RYL G L + Sbjct 243 LLPTGHCSAEAIADQLSMHPRTLQRRLAEEGVRCQDLIERERRAQAARYLAEPGFHLGQI 302 Query 299 ARELGYAEQSVLTRSCKRWFGTGPAAYR 326 A LGY EQS L RSC+RWFG P YR Sbjct 303 AGLLGYTEQSTLNRSCRRWFGKTPRQYR 330 >gi|73538979|ref|YP_299346.1| AraC family transcriptional regulator [Ralstonia eutropha JMP134] gi|72122316|gb|AAZ64502.1| transcriptional regulator, AraC family [Ralstonia eutropha JMP134] Length=339 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 114/334 (35%), Positives = 185/334 (56%), Gaps = 5/334 (1%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTA 61 ++VR + L YP+L+ LG DP LL+ + + +G+ DA IS+RA + +E++A T Sbjct 3 ALVRASGLRGYPALMRDLGCDPTPLLQRYHLDEGALGSDDAMISLRAVVHLLEASAEQTR 62 Query 62 TMDFGRRLAQRQGIEILGPVGVAARTAATVGDAL--AIFNTFMAAYSPVIAI-RITPLAG 118 T D G RL++ Q I++LGP+ +A + A T+ A+ A +TF+ + V A+ + + A Sbjct 63 TGDLGLRLSRHQSIDVLGPLSIALQNAPTIRAAMDFAARHTFVHSPGLVYAVHKHSEFAN 122 Query 119 QRSFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQ 178 + +++E L + QT++L L RLL G Y AV +PH P+ P + Y + Sbjct 123 DAAEVSIEIRLSRQPAQRQTIDLCLADIHNFTRLLAGDRYLLRAVSVPHTPVVPVSTYER 182 Query 179 YFGCRPYFAE-RVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIV-ESVRTIV 236 +FG R + + R R+ + L D R+ DY+ +G V + VR ++ Sbjct 183 FFGARVWVEQPRASLHLSRSTLAADLLGVDATLRRIAEDYIFRHFGSEQGSVSDRVRQVL 242 Query 237 RQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLT 296 RQ L T + + VA+ LHP+T+QRRLA E T+F + D VR+++A RYL T + L Sbjct 243 RQTLGTSSHSKATVADLLALHPRTMQRRLAAEATSFEAIRDDVRRELAMRYLCETSLPLG 302 Query 297 HLARELGYAEQSVLTRSCKRWFGTGPAAYRNQAR 330 ++ LG QS L+R+C++W+G P+A R R Sbjct 303 QISLLLGLPAQSALSRACRQWYGVPPSALRKHKR 336 >gi|332534194|ref|ZP_08410041.1| putative transcriptional regulator, AraC family [Pseudoalteromonas haloplanktis ANT/505] gi|332036360|gb|EGI72830.1| putative transcriptional regulator, AraC family [Pseudoalteromonas haloplanktis ANT/505] Length=336 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 96/334 (29%), Positives = 166/334 (50%), Gaps = 3/334 (0%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYD-AFISIRAAIRAIESAAAVT 60 S++R T+L +L++ GGDP ++++ + + D N D ++ R +E A Sbjct 3 SLIRATSLQGIDTLISEFGGDPHEIMQSCNISNVDFKNLDNQYLPYRDYAELLEYCACKF 62 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 FG +LA RQ +ILG + +AA+++ +GDAL ++ +SP +++ PL + Sbjct 63 NCSSFGLKLASRQNFDILGHIAIAAKSSTNLGDALNWVIKYLYLHSPALSLNSHPLENDK 122 Query 121 S-FIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQY 179 S F++ E L Q +EL +G+AL VI+ L P+ + LP T Y Y Sbjct 123 SLFLSFEINLKPLPHINQVIELTIGLALAVIKKLSNNRCKPINIFLPKKLSTNTRAYNTY 182 Query 180 FGCRPYFAERVGGFTMRTADLSRPLNRDDVAH-RVVVDYLSSITPLGEGIVESVRTIVRQ 238 GC G + +DL+ L+ + + +++L+ + + V ++R Sbjct 183 LGCNVIEHRNSAGIVISKSDLTLELDHPKLNKVQAALNFLAKNKEHTQPLPNQVSALIRP 242 Query 239 LLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHL 298 +LP + ++ +HP+TL R L + NT+FV L D R+ +A YL ++ + Sbjct 243 MLPIYQCSNQTISAALGMHPRTLHRELIKHNTSFVKLKDATRRALAAHYLAQNQFTISTI 302 Query 299 ARELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQ 332 + LGY EQ+ L+ + KRWFG P AYR + L Sbjct 303 SELLGYQEQATLSVNVKRWFGCSPRAYRTKKMLN 336 >gi|299532411|ref|ZP_07045803.1| helix-turn-helix domain-containing protein [Comamonas testosteroni S44] gi|298719649|gb|EFI60614.1| helix-turn-helix domain-containing protein [Comamonas testosteroni S44] Length=345 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 110/333 (34%), Positives = 170/333 (52%), Gaps = 5/333 (1%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 M+ VR +LA + LV GGDPA +LRA G+ +D+ + + ++ A AIE AA V Sbjct 11 MTSVRAASLAGFEELVRAQGGDPAAILRACGLVPEDLADPERYLPSHAVALAIEEAACVL 70 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 DFG RL +QG+E LG +G+ ++A TV + + ++ ++P ++ R T +A Sbjct 71 GVQDFGLRLCAQQGVETLGLLGLVIQSAPTVREGMMQGGKYVHFHNPTLSYR-TFMAPDE 129 Query 121 SFIALEFL--LDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQ 178 +E L L A PQ E+ + +I +L P A+HL H P+ A Y + Sbjct 130 GLECVEVLSRLPSQAHMPQGTEICVAYMCRLIHVLSEGALRPAAIHLRHAPVGSSAQYRR 189 Query 179 YFGCRPYFAERVGGFTMRTADLSRPLNRDD-VAHRVVVDYLSSITPLGE-GIVESVRTIV 236 + G P F G + +P+ R + + + V +L P + G+ + VR + Sbjct 190 HLGQLPRFRSSFDGIAVDPLAWRQPMPRHNRLLQQFVERFLLGAAPGRDTGVTDQVRNAL 249 Query 237 RQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLT 296 L+ G A L VA HP+TLQRRL E F L D RK + L + L Sbjct 250 ANLVRMGMADLPSVARALSQHPRTLQRRLQAEGAAFEELRDSARKTWVAQLLAQPDLSLG 309 Query 297 HLARELGYAEQSVLTRSCKRWFGTGPAAYRNQA 329 H+A+ LGY++Q+VLTR+C+RWFG P R+++ Sbjct 310 HIAQLLGYSDQAVLTRACQRWFGQSPRQLRHRS 342 >gi|94314148|ref|YP_587357.1| AraC family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358000|gb|ABF12088.1| transcriptional regulator, AraC family [Cupriavidus metallidurans CH34] Length=339 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 109/334 (33%), Positives = 175/334 (53%), Gaps = 5/334 (1%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTA 61 ++VR + L YP+L+ +G DPA LLR V + + + DA IS+RA + +E++A T Sbjct 3 ALVRTSGLRGYPALMRAMGCDPAPLLRRYHVDEGALDSDDAMISLRAVVHLLEASAEQTR 62 Query 62 TMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRI---TPLAG 118 T DFG RL+ Q I++LGP+ +A + A T+ + M +SP + + + +A Sbjct 63 TGDFGLRLSNHQSIDVLGPLSIALQNATTIRAGMDFAAHHMFVHSPGLVYTVHEHSEIAK 122 Query 119 QRSFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQ 178 + +++E L + Q ++L L RLL G YA AV +PH P+ + Y + Sbjct 123 DAAEVSIEIRLSRQPAQRQAIDLCLADMHNFTRLLAGDRYALRAVSIPHTPIASLSTYER 182 Query 179 YFGCRPYFAE-RVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGEGIV-ESVRTIV 236 +FG R + R R+ + L D R+ DY+ G V + VR ++ Sbjct 183 FFGARVLVEQPRASLHLSRSTLAADLLGVDATLRRIAEDYIFRNFRSEHGSVSDRVRQVL 242 Query 237 RQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLT 296 R L T + + VA+ +HP+T+QRRL E T+F + + VRK++A RYL T + L Sbjct 243 RDTLGTSSHSKASVADLLAMHPRTMQRRLTAEATSFEAIRNDVRKELAMRYLSETNLPLG 302 Query 297 HLARELGYAEQSVLTRSCKRWFGTGPAAYRNQAR 330 + LG QS L+R+C++W+G P+A R R Sbjct 303 QITLLLGLPAQSALSRACRQWYGAAPSALRKHKR 336 >gi|335420252|ref|ZP_08551290.1| araC/xylS-family virulence-regulating transcriptional regulator virS [Salinisphaera shabanensis E1L3A] gi|334894611|gb|EGM32796.1| araC/xylS-family virulence-regulating transcriptional regulator virS [Salinisphaera shabanensis E1L3A] Length=342 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 121/328 (37%), Positives = 165/328 (51%), Gaps = 5/328 (1%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTA 61 S+VR +AL + + V LGGDP LL G+ DAF+S RA IR +E A Sbjct 3 SLVRNSALDGFEAFVRQLGGDPQALLSDCGIPLDIETQTDAFLSYRALIRLLELGAERLQ 62 Query 62 TMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQRS 121 DFG R+AQ QGI ILGP+ V R A TV A ++ ++P + I G R Sbjct 63 CPDFGMRMAQAQGIGILGPLAVVVRHAGTVAQAFEQAAKYLHVFNPGQRMTIRR-NGARV 121 Query 122 FIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYFG 181 + + LLD Q E AL V L L G P V L P + Y + FG Sbjct 122 CLRFQILLDNVPYARQANERAL-VFLKRTLELGGEAAPPRRVLFSDSQLAPTSVYREVFG 180 Query 182 CRPY-FAERVGGFTMRTADLSRPLNRDDVAHR-VVVDYLSSITPLGEGIVES-VRTIVRQ 238 F E V G + A ++ L R + R + + ++ E V + VR I R+ Sbjct 181 TDALSFNEAVCGLDVDRATMTASLRRSNPHIRSMAIAFMEQTGGTREREVSTRVREICRR 240 Query 239 LLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHL 298 LLPTG +++ AE +L+ +TLQRRL +E T+F ++D VR D+A RYL + + L+ + Sbjct 241 LLPTGGVGIDIAAEYLNLNRRTLQRRLVDEGTSFSAVLDAVRIDLATRYLGESDLPLSQV 300 Query 299 ARELGYAEQSVLTRSCKRWFGTGPAAYR 326 A LGY EQS RSC+RWFG P R Sbjct 301 AALLGYTEQSAFNRSCRRWFGETPRVRR 328 >gi|119468607|ref|ZP_01611659.1| putative transcriptional regulator, AraC family protein [Alteromonadales bacterium TW-7] gi|119447663|gb|EAW28929.1| putative transcriptional regulator, AraC family protein [Alteromonadales bacterium TW-7] Length=343 Score = 169 bits (427), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 96/329 (30%), Positives = 161/329 (49%), Gaps = 6/329 (1%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTA 61 + ++ T+L SLV LG D + ++ G+ ++ +E A Sbjct 3 NFIKATSLQGIDSLVKSLGADISQIMTQLGLNICFNNLEQQYLPYSTYAELLEHCAHSLN 62 Query 62 TMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQRS 121 FG +LA +Q +ILGP+ +AA+++ +GDAL ++ ++P +++ I PL ++ Sbjct 63 CPSFGLQLANKQSFDILGPIAIAAKSSTNLGDALNWVIKYLHLHTPALSLTIHPLEADKT 122 Query 122 -FIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 F++ + L+ Q +EL +G+A+GVI+ + P AV LP LT Y YF Sbjct 123 LFLSFQINLNPLPKTTQVLELTIGLAIGVIKKISNNTCKPQAVFLPQKQLTNTRAYNTYF 182 Query 181 GCRPYFAERVGGFTMRTADLSRPLNR---DDVAHRVVVDYLSSITPLGEGIVESVRTIVR 237 GC+ G + DL+ + + D V + +L+ + + V ++R Sbjct 183 GCKVTHNRNSAGIVILKTDLALSIAQPQYDKVP--AALQFLAQSEQQNQSLPTQVSALIR 240 Query 238 QLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTH 297 +LP T +A +HP+TL R L + NT+FV L D R+ +A YL ++ Sbjct 241 PMLPIYQCTNETIAAALGMHPRTLHRELNKHNTSFVKLKDSTRRSLAAHYLTQNHYSIST 300 Query 298 LARELGYAEQSVLTRSCKRWFGTGPAAYR 326 ++ LGY EQ+ L+ S KRWFG P AYR Sbjct 301 ISELLGYQEQATLSASVKRWFGYSPRAYR 329 >gi|84498618|ref|ZP_00997381.1| putative transcriptional regulator [Janibacter sp. HTCC2649] gi|84381151|gb|EAP97036.1| putative transcriptional regulator [Janibacter sp. HTCC2649] Length=338 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 107/335 (32%), Positives = 172/335 (52%), Gaps = 4/335 (1%) Query 3 VVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTAT 62 ++R +L + LV LGGDP L G+ + + DA +SI R ++ A Sbjct 4 MIRAASLRGFAPLVRELGGDPDALYARFGIDVGALAHDDALVSITDHDRMLDVTARELDC 63 Query 63 MDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA-GQRS 121 D G RLA Q I ILGP+ VA ++TV +A+ ++F+ +SP ++I + P G R Sbjct 64 PDLGLRLATSQDITILGPMAVAIEASSTVAEAVECASSFIFVHSPALSIGVEPDPRGVRG 123 Query 122 FIALEFLLDEPAS--YPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQY 179 +AL + D S PQ +EL L + V L+G Y +V +PH PL+P + Y++ Sbjct 124 VVALTYRKDPRQSPYSPQGIELGLALFHQVAAFLIGERYGLRSVEIPHAPLSPVSRYVEA 183 Query 180 FGCRPYFAERVGGFTMRTADLSRPLNRDDVA-HRVVVDYLSSITPLGEGIVESVRTIVRQ 238 FG F + + + + A H + + +L S + VR + + Sbjct 184 FGAEVKFGGETPALRVHRSTMDATFESANAAIHAMALKHLRSHENPTRTVAARVRLALAE 243 Query 239 LLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHL 298 +L +L+ A + P+TLQR LA+ENTTF +++D+VR + A RYL T + ++ + Sbjct 244 VLGNSDPSLDTAARLLQVQPRTLQRHLAQENTTFELVLDQVRHEAARRYLTMTDLPMSQI 303 Query 299 ARELGYAEQSVLTRSCKRWFGTGPAAYRNQARLQT 333 A +G+AEQS L+R+ +RW G P R+ A L + Sbjct 304 AALVGFAEQSTLSRAVRRWEGQSPREVRHAAGLSS 338 >gi|221066563|ref|ZP_03542668.1| transcriptional regulator, AraC family [Comamonas testosteroni KF-1] gi|220711586|gb|EED66954.1| transcriptional regulator, AraC family [Comamonas testosteroni KF-1] Length=345 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 108/334 (33%), Positives = 166/334 (50%), Gaps = 5/334 (1%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 M+ VR +LA + LV GGDPA +L A G+ D+ + + ++ A AIE AA V Sbjct 11 MTSVRAASLAGFEDLVRTQGGDPAAILGACGLVPDDLADPERYLPSHAVALAIEEAACVL 70 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 DFG RL RQG+E LG +G+ ++A TV + + ++ ++P ++ R T +A Sbjct 71 GVQDFGLRLCARQGVETLGLLGLVIQSAPTVREGMMQGGKYVHFHNPTLSYR-TFMAPDE 129 Query 121 SFIALEFLLDEP--ASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQ 178 +E L P A PQ E+ + +I +L P A+HL H P+ A Y + Sbjct 130 GLECVEVLSRLPPHAHMPQGTEICVAYMCRLIHVLSEGALRPSAIHLRHAPVGSSAQYRR 189 Query 179 YFGCRPYFAERVGGFTMRTADLSRPLNRDD-VAHRVVVDYLSSITP-LGEGIVESVRTIV 236 + G P F G + +P+ R + + + V +L P + + VR+ + Sbjct 190 HLGQLPRFGSSFDGIAIDPLAWRQPMPRHNRLLQQFVERFLLGAAPGRNTSVTDQVRSAL 249 Query 237 RQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLT 296 L+ G A L A HP+TLQRRL E F L D R+ + L + L Sbjct 250 ANLVRMGMADLPSAARALSQHPRTLQRRLQAEGAAFEELRDSARRTWVAQLLAQPELSLG 309 Query 297 HLARELGYAEQSVLTRSCKRWFGTGPAAYRNQAR 330 H+A+ LGY++Q+VLTR+C+RWFG P R+ +R Sbjct 310 HIAQLLGYSDQAVLTRACQRWFGQSPRQLRHGSR 343 >gi|325000154|ref|ZP_08121266.1| putative transcriptional regulator [Pseudonocardia sp. P1] Length=341 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 120/331 (37%), Positives = 171/331 (52%), Gaps = 7/331 (2%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQ--DVGNYDAFISIRAAIRAIESAAAV 59 S+ R AL P LV LGGD A +L + + D + DA + RA +E+AAA Sbjct 5 SLTRARALRGLPGLVDELGGDGAAMLDRFHIPAEAVDGADPDALVPTRAVALVLETAAAE 64 Query 60 TATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQ 119 D G RLA+RQG EILGP+ VA + + T+G AL + ++ +SP + I P Sbjct 65 LDCSDLGLRLAERQGPEILGPLAVAVQNSPTLGAALDCASKYLYVHSPALRIAAVPDPEH 124 Query 120 RSFI-ALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQ 178 + + +E+ E P +L +GV +I LL G Y +VHLPH L E Y + Sbjct 125 VAGVTGVEYGSTERLP-PHVADLGVGVLHRIIGLLSGGGYGLRSVHLPHPALASERRYRE 183 Query 179 YFGCRPYFAERVGGFTMRTADLSR-PLNRDDVAHRVVVDYLSS-ITPLGEGIVESVRTIV 236 +FG F +R ADL R PL+ D + ++YL + + + VRT V Sbjct 184 FFGAEVRF-DRPTAVLRVPADLPRRPLDGDQAVRDIAIEYLETHFDRPDRRVTDRVRTAV 242 Query 237 RQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLT 296 + L TG + VA +HP+TLQR LA E+TTF +VD R+D A+R + + + T Sbjct 243 DRSLGTGPVRIGAVARLLRVHPRTLQRHLAAEDTTFEQIVDDARRDTAERLVTRSDLPFT 302 Query 297 HLARELGYAEQSVLTRSCKRWFGTGPAAYRN 327 +A +G AEQS LTR+ +RWFG P R Sbjct 303 QIAAMVGLAEQSALTRASRRWFGVPPRTLRK 333 >gi|77362173|ref|YP_341747.1| AraC family transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76877084|emb|CAI89301.1| putative transcriptional regulator, AraC family [Pseudoalteromonas haloplanktis TAC125] Length=332 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/329 (28%), Positives = 163/329 (50%), Gaps = 2/329 (0%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTA 61 S++R T+L +L+ G + +++A + + ++S R +E A Sbjct 3 SLIRATSLQGIDTLILEFGANVTAIMQACNINVDFTQLENQYVSYRCYAALLEYCAQQFN 62 Query 62 TMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQRS 121 FG +LA RQ +ILG + +AA++ + DAL ++ +SP + + PL +S Sbjct 63 CPSFGLKLASRQSFDILGYISIAAKSGTYLSDALDWVVKYLHLHSPALRLTAHPLEDDKS 122 Query 122 -FIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 F++ E L+ + Q EL +G+A+G I+ L P+ V LP T + Y YF Sbjct 123 LFLSFEINLNPLPNINQVTELTIGLAMGAIKKLSNNQCKPITVFLPQKLTTSKYAYNSYF 182 Query 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAH-RVVVDYLSSITPLGEGIVESVRTIVRQL 239 C+ G + DLS L + ++ + ++L+ + + V ++R + Sbjct 183 DCKVIEHRNSAGIVIAKQDLSIALEQGELINVEAARNFLAKNSQYNSPLPIQVSALMRPM 242 Query 240 LPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLA 299 LP + + +A ++HP+TL R+LA+ NT+FV L D R+ +A YL + ++ ++ Sbjct 243 LPIYQCSNHTIAAALNMHPRTLHRKLAKHNTSFVKLKDATRRALAQHYLTQGQLTISTIS 302 Query 300 RELGYAEQSVLTRSCKRWFGTGPAAYRNQ 328 LGY EQ+ L+ S KRWFG P R++ Sbjct 303 ELLGYQEQATLSTSVKRWFGCSPRVMRSK 331 >gi|289571287|ref|ZP_06451514.1| LOW QUALITY PROTEIN: araC/xylS-family virulence-regulating transcriptional regulator virS [Mycobacterium tuberculosis T17] gi|289545041|gb|EFD48689.1| LOW QUALITY PROTEIN: araC/xylS-family virulence-regulating transcriptional regulator virS [Mycobacterium tuberculosis T17] Length=315 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 112/315 (36%), Positives = 160/315 (51%), Gaps = 13/315 (4%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLR----AAGVRDQDVGNYDAFISIRAAIRAIESAA 57 S++R T L Y L+ LG DP LR G+ Q+ DAF+S+ +R +E++A Sbjct 5 SLIRATNLWGYTDLMRELGADPLPFLRRFDIPPGIEHQE----DAFMSLAGFVRMLEASA 60 Query 58 AVTATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLA 117 A DFG RLA+ QG+ ILGPV V AR AAT+ L ++ +SP + + ++ Sbjct 61 AELDCPDFGLRLARWQGLGILGPVAVIARNAATLFGGLEAIGRYLYVHSPALTLTVSSTT 120 Query 118 GQRSFIALEFLLDEPA-SYP-QTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAF 175 RS + + + EP YP Q EL++ A +IRLL G H L +A Sbjct 121 A-RSNVRFGYEVTEPGIPYPLQGYELSMANAARMIRLLGGPQARARVFSFRHAQLGTDAA 179 Query 176 YLQYFGCRPYFAERVGGFTMRTADLSRPLNR-DDVAHRVVVDYLSS-ITPLGEGIVESVR 233 Y + GC F GF + RP++ D R+ YL S P + E V Sbjct 180 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSERVV 239 Query 234 TIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGI 293 + R+LLPTG + +A+Q +HP+TLQRRLA E L++R R+ A RYL G+ Sbjct 240 GLARRLLPTGQCSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYLAQPGL 299 Query 294 GLTHLARELGYAEQS 308 L+ +A LGY+EQS Sbjct 300 YLSQIAVLLGYSEQS 314 >gi|315123262|ref|YP_004065268.1| AraC family transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315017022|gb|ADT70359.1| AraC family transcriptional regulator [Pseudoalteromonas sp. SM9913] Length=333 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 91/328 (28%), Positives = 156/328 (48%), Gaps = 4/328 (1%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTA 61 S+++ T+L +L+ LGGD A ++R + ++ R +E A Sbjct 3 SLIKATSLQGIDTLITELGGDTANIMRHCAIEVTLNSLETQSLTYRHYAELLEYCAHSLN 62 Query 62 TMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAG-QR 120 FG +LA +Q +ILG + +AA++ +G+AL ++ ++P + + L Q Sbjct 63 CPSFGLKLASKQSFDILGHIAIAAKSGTDLGEALTWVIKYLHLHTPALNLTTHTLEDDQN 122 Query 121 SFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 F++ E L Q +EL + +AL ++ + P+ V LP Y Q+F Sbjct 123 IFLSFEIKLKPLPVINQVIELTIALALATLKKVSQNQCKPIKVFLPQKLDANLRAYHQHF 182 Query 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRV--VVDYLSSITPLGEGIVESVRTIVRQ 238 GC G + DL PLN D H+V +++L++ + + V ++R Sbjct 183 GCNVIEHRNSAGILIAKNDLLLPLNVSD-QHKVQAALNFLAANNAHTQSLPSQVSALIRP 241 Query 239 LLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHL 298 +LP + +A +LHP+TL R L + NT+FV L D R+ + + YL ++H+ Sbjct 242 MLPLFQCSNQTIATALNLHPRTLHRELKKHNTSFVKLKDATRRALCEHYLMQNQFSISHI 301 Query 299 ARELGYAEQSVLTRSCKRWFGTGPAAYR 326 + LGY EQ+ L+ S KRWF A+R Sbjct 302 SELLGYQEQATLSASVKRWFNCSARAFR 329 >gi|54023095|ref|YP_117337.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54014603|dbj|BAD55973.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length=338 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 113/332 (35%), Positives = 169/332 (51%), Gaps = 6/332 (1%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 MSV+R L + + VA LGGD A G+ + D + +A +E AA Sbjct 1 MSVIRSAGLRGFRATVAELGGDAEEFAAAVGLPVAALDADDLLVPDQAVAAVLELAAHRL 60 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITP-LAGQ 119 D G R+A+RQ +++LGP+ +A R + T+ L + ++ ++ +++ I P G+ Sbjct 61 DRPDLGLRIARRQDLDMLGPLALAIRNSPTLAHVLECTSRYLFVHARSLSLEIEPDPHGE 120 Query 120 RSFIALEFLLDEPASYP-QTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQ 178 R +AL + + P Q +L LG I+ L+ Y +V LP+ P P A Y + Sbjct 121 RGVLALRYGVRPGLPTPVQGTDLGLGFVHRAIQRLVAPRYGLRSVELPYRPSAPAAAYEE 180 Query 179 YFGCRPYFAERVGGFTMRTADLS-RPLNR-DDVAHRVVVDYLSS-ITPLGEGIVESVRTI 235 +FG P R A+L+ RPL+ D+ HR+ + +L+ T G VR Sbjct 181 FFGA-PVRTGRPAALLRVPAELADRPLSGGDENLHRLALAFLAEQATETGAATAPKVRAA 239 Query 236 VRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGL 295 V+QLL T + VVA +HP+TLQR LA E T F ++D VR+ A RYL TT + L Sbjct 240 VQQLLGTTPPEIGVVARLLAMHPRTLQRSLAAEGTGFAAILDDVRRQQARRYLTTTTMPL 299 Query 296 THLARELGYAEQSVLTRSCKRWFGTGPAAYRN 327 +A LG AEQ+ LTR C+RW+G P R Sbjct 300 AQVASLLGLAEQATLTRCCRRWWGRTPTQVRR 331 >gi|337281218|ref|YP_004620690.1| AraC family transcriptional regulator [Ramlibacter tataouinensis TTB310] gi|334732295|gb|AEG94671.1| transcriptional regulator, AraC family-like protein [Ramlibacter tataouinensis TTB310] Length=322 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 101/299 (34%), Positives = 151/299 (51%), Gaps = 4/299 (1%) Query 35 QDVGNYDAFISIRAAIRAIESAAAVTATMDFGRRLAQRQGIEILGPVGVAARTAATVGDA 94 +D+ + + + R R +E++A DFG RLAQ Q I ILGP+ +A A TV +A Sbjct 9 EDLSDEEMLLPARQIGRLLEASAKSLRCPDFGLRLAQLQDIRILGPIAIAIENARTVKEA 68 Query 95 LAIFNTFMAAYSPVIAIRITPLAGQRSFIAL--EFLLDEPASYPQTMELALGVALGVIRL 152 L + + +M + ++I P I L F A+ Q ++L LG ++ L Sbjct 69 LDVVSKYMFVHHDGMSISTVPHRDGPGRIELCYGFRAGPQAAARQAIDLVLGGGHRILGL 128 Query 153 LLGADYAPLAVHLPHDPLTPEAFYLQYFGCRPYFAERVGGFTMRTADLSRPLNRDDVAHR 212 L G +Y VHLP+ P+ P A Y + FG F + + A L+ PL + + R Sbjct 129 LGGENYLLHEVHLPYAPIAPPASYQRSFGVPVLFRQNKAALVVSGALLNAPLPHANESLR 188 Query 213 -VVVDYLSSITPLG-EGIVESVRTIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENT 270 + DYL G +G++ VR + L A+L VA L P+TLQRRLA+ Sbjct 189 GMATDYLQKHFGAGRDGLIARVRLAIVSGLENSDASLAKVASLLALQPRTLQRRLADAGE 248 Query 271 TFVILVDRVRKDVADRYLRTTGIGLTHLARELGYAEQSVLTRSCKRWFGTGPAAYRNQA 329 +F + D ++ A YLR++ + L+ +A LG ++QS L RSCKRWFG P A R A Sbjct 249 SFEAMRDDAMREAAWTYLRSSDMALSDIAARLGLSQQSALARSCKRWFGDTPLAVRRGA 307 >gi|78062048|ref|YP_371956.1| AraC family transcriptional regulator [Burkholderia sp. 383] gi|77969933|gb|ABB11312.1| transcriptional regulator, AraC family [Burkholderia sp. 383] Length=348 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 105/336 (32%), Positives = 172/336 (52%), Gaps = 8/336 (2%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYD-AFISIRAAIRAIESAAAVT 60 +++R T + Y L+ LG DP LLR + D+G+ D A + I + ++ +E +AA Sbjct 3 AIIRSTGMKGYRELMTTLGVDPMPLLRKHKL-PADLGDVDDATVPILSVMQLMEDSAAAA 61 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRI---TPLA 117 D G +LA RQ I+ILGP+ +A + +A V +A+ + ++ +SP + + + L Sbjct 62 HRPDLGLQLAARQDIDILGPLAMAIQHSANVREAMTTASRYLYVHSPAAQLSVIEPSTLV 121 Query 118 GQRSFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYL 177 + I LE ++ Q ++ LG ++R +Y LAV P+ Y Sbjct 122 QDAAEIRLELVVPRAPVCRQALDQCLGRMHHLVRSFAADNYRLLAVAFPYGNSADPGAYA 181 Query 178 QYFG-CRPYFAERVGGFTMRTADL-SRPLNRDDVAHRVVVDYLS-SITPLGEGIVESVRT 234 ++FG R Y + G + L SR N + + ++YL G +VE VR Sbjct 182 RFFGQARIYTEQEHAGLHVSPQTLGSRLENVNASLKNIALEYLQRHYGDPGLSMVERVRR 241 Query 235 IVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIG 294 + L + + +AE +HP+T+QR+LA+E TF + D VR+++A RYL+ T I Sbjct 242 ALHCTLGATGGSKSAIAELLFVHPRTMQRKLADEGATFEGVRDEVRQEIALRYLQQTTIP 301 Query 295 LTHLARELGYAEQSVLTRSCKRWFGTGPAAYRNQAR 330 L L LG+++QSVLT+S RWFG P+ R +R Sbjct 302 LAQLTSLLGFSDQSVLTQSSIRWFGMPPSKIRASSR 337 >gi|134100828|ref|YP_001106489.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291008659|ref|ZP_06566632.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133913451|emb|CAM03564.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length=336 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 111/336 (34%), Positives = 170/336 (51%), Gaps = 13/336 (3%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 MS++R L + + VA LGG RAAG+ + D + +E AAA Sbjct 1 MSMIRSAGLRGFRATVAELGGRAEDHARAAGLPVAALDVDDLLVPDHVLAEVLEIAAAEL 60 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNT--FMAAYSPVIAIRITPLAG 118 D G R+A RQ + +LGP+ +A + + +VGDAL + F+ A S + + P G Sbjct 61 GCPDLGLRVAARQDLGMLGPLALAIQNSPSVGDALECTSRYLFVHARSLSLVLEDDP-HG 119 Query 119 QRSFIALEFLLDEPASYP---QTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAF 175 R AL + L P P Q +LALG I L+ Y V LPH P + A Sbjct 120 ARGVAALRYGL--PPGAPIAVQATDLALGFLHRAIEFLVSGPYGLRTVELPHTPRSLRA- 176 Query 176 YLQYFGCRPYFAERVGGFTMRTADLSRPLN-RDDVAHRVVVDYLSSITPLGEG--IVESV 232 + ++FG + + +RPL D+ ++ + +L+ P GE + V Sbjct 177 HEEFFGVPVRTGSSAPMLRLPRSLAARPLTGSDERVRQLALGFLAEQAP-GEATLLAPRV 235 Query 233 RTIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTG 292 R +V Q L T + + VVA ++HP+T+QRRLA E T+F ++D VR++ A RYL TT Sbjct 236 RAVVAQSLGTASPEIGVVAGLVNMHPRTMQRRLARERTSFARILDDVRREAARRYLTTTD 295 Query 293 IGLTHLARELGYAEQSVLTRSCKRWFGTGPAAYRNQ 328 + ++ + LG +EQS L+R C+RW+G+ P+A R Sbjct 296 MPMSQVTGLLGLSEQSALSRCCRRWWGSTPSAVRRN 331 >gi|157369419|ref|YP_001477408.1| AraC family transcriptional regulator [Serratia proteamaculans 568] gi|157321183|gb|ABV40280.1| transcriptional regulator, AraC family [Serratia proteamaculans 568] Length=345 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 104/332 (32%), Positives = 170/332 (52%), Gaps = 8/332 (2%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYD-AFISIRAAIRAIESAAAVT 60 +++ T Y L+ LG DP LLR G+ D+G D A + I ++ +E +A VT Sbjct 7 TMINSTGFKGYSGLMNELGVDPLPLLRKHGL-PVDLGEVDDAVVPIIPVMQLMEESALVT 65 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRI---TPLA 117 +DFG LA RQGI+I+GP+ +A + + V +A+ + F+ +SP + + I +PL Sbjct 66 QHLDFGLTLAARQGIDIIGPLAMAIQHSKNVREAMDTASRFLYVHSPAVQLSIIDPSPLI 125 Query 118 GQRSFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYL 177 I LE + + QT+E L +++ +Y LA+ P+ ++ + Y Sbjct 126 PGAVEIRLEQAVPNAPLFRQTIEHCLSRLHYLLKSFAKDNYHLLAITFPYGDVSNFSDYR 185 Query 178 QYFG-CRPYFAERVGGFTMRTADLSRPL-NRDDVAHRVVVDYLSSITPLGE-GIVESVRT 234 ++FG + G + L+ L N + + +DYL E + VR Sbjct 186 RFFGPAQVCLEHEFSGLHLSPKTLNSKLDNVSSLLKNIALDYLQRHYGNPELSMTSRVRR 245 Query 235 IVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIG 294 + + + + +AE LHP+T+QR+LAEE+ TF + D VR+++A R+L T I Sbjct 246 ALHCTIGAMGGSKSSIAELLFLHPRTMQRKLAEESATFEGIRDGVRQEIALRFLTQTRIP 305 Query 295 LTHLARELGYAEQSVLTRSCKRWFGTGPAAYR 326 L LA LG+++QSVLT S +RWFG P+ R Sbjct 306 LAQLAAILGFSDQSVLTTSSRRWFGMSPSKVR 337 >gi|264680481|ref|YP_003280391.1| AraC family transcriptional regulator [Comamonas testosteroni CNB-2] gi|299532958|ref|ZP_07046345.1| transcriptional regulator, AraC family protein [Comamonas testosteroni S44] gi|262210997|gb|ACY35095.1| transcriptional regulator, AraC family [Comamonas testosteroni CNB-2] gi|298719182|gb|EFI60152.1| transcriptional regulator, AraC family protein [Comamonas testosteroni S44] Length=344 Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 105/333 (32%), Positives = 151/333 (46%), Gaps = 11/333 (3%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 ++ VR +L N+ L + LGGDP LR AG+R V D I A R +E AA++T Sbjct 2 VTFVRAASLTNFSELFSELGGDPDAALRRAGLRPAVVREQDQLIDALTAGRLLEEAASIT 61 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 +FG R+AQ + + G V + T+ L+ + + + I + G Sbjct 62 GCENFGLRMAQSRQVSNFGVVSLLLLHQPTLRKVLSTLIEHVHMLNESLVIHMDDANGV- 120 Query 121 SFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 + EF L P + PQ+MELA+GV LLL + PL V H + Q F Sbjct 121 VVLREEFTL--PDALPQSMELAIGVLFRTCNLLLHEQWRPLRVCFSHPAPGDTGLHKQMF 178 Query 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGE-----GIVESVRTI 235 CR F G RT DL P + +A V+V Y ++ + I + VR Sbjct 179 RCRVEFDADFNGIVFRTEDLDAP---NPLADPVLVRYAKTMVDTTQQGRQASIGQQVRKA 235 Query 236 VRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGL 295 + +LP+G AT VA+ +TLQR L E +F L+ VR D+A RY+R + Sbjct 236 IYLMLPSGNATCICVAQGLGRSVRTLQRELDGEGLSFTDLLQEVRSDLAQRYVRNPDYPV 295 Query 296 THLARELGYAEQSVLTRSCKRWFGTGPAAYRNQ 328 +A LGY S TR FG P +R + Sbjct 296 GQIASMLGYNSHSAFTRWFSTLFGCPPEVWRER 328 >gi|311105554|ref|YP_003978407.1| AraC family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310760243|gb|ADP15692.1| bacterial regulatory helix-turn-helix protein, AraC family protein 13 [Achromobacter xylosoxidans A8] Length=339 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 101/327 (31%), Positives = 157/327 (49%), Gaps = 5/327 (1%) Query 2 SVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTA 61 ++R +L Y LV LG DP +R+ G+ + + + + I AA +E A T Sbjct 6 QLMRSGSLNGYVELVESLGRDPHAFMRSVGLEARFLQDPEMLIPRDAARELLEITARATR 65 Query 62 TMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQRS 121 DF RLA R+ + LGP+ + R AT AL ++ + + IR+ G Sbjct 66 IEDFALRLAARRKLSALGPISLVLREEATPRQALDTLCRYLKLVNASLIIRVEDTGGL-- 123 Query 122 FIALEFLLDEPA-SYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 I E LL P Q++ELA+G ++ L+G + PL V H P + +F Sbjct 124 VIIREDLLPTPGLQMRQSVELAVGTMFCILSELIGQQWQPLEVCFSHRPPEDVTAHRAFF 183 Query 181 GCRPYFAERVGGFTMRTADLSRPLNR-DDVAHRVVVDYL-SSITPLGEGIVESVRTIVRQ 238 F + G +ADLSRP + D VA + YL +++T GE E+ R I+ Sbjct 184 RRNVKFNQEFNGLVCSSADLSRPREQGDQVAAGLARKYLEAAMTGRGESAQETCRRIILA 243 Query 239 LLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHL 298 LLP GA + VA H+ +TL RRL E +F ++D VR+D+ +LR + + L + Sbjct 244 LLPGGACSAPEVARFLHVDRRTLHRRLGAEGLSFSRVLDEVRRDLVQHHLRESDLPLGEV 303 Query 299 ARELGYAEQSVLTRSCKRWFGTGPAAY 325 A LG++ S + + FG P+A+ Sbjct 304 AELLGFSRPSSFSHWFRDQFGCSPSAW 330 >gi|226363050|ref|YP_002780832.1| AraC family transcriptional regulator [Rhodococcus opacus B4] gi|226241539|dbj|BAH51887.1| putative AraC family transcriptional regulator [Rhodococcus opacus B4] Length=355 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 104/330 (32%), Positives = 156/330 (48%), Gaps = 7/330 (2%) Query 3 VVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTAT 62 + R AL Y L LG +PA +LRAAG+ +G D +I A R +E +A + Sbjct 23 LARYAALNGYVELCRSLGLEPAPMLRAAGLDPSGLGLQDRWIPAAAIARLLEQSADGSGY 82 Query 63 MDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQRSF 122 DFG RLA+R+ LGP+ + R V AL + + Y+ + R++ G Sbjct 83 GDFGVRLAERRQFSNLGPLSLVVREEPDVRSALRVLTRYEHTYNEALRTRMSEHGG---L 139 Query 123 IALEFLLD--EPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 + L LD E Q++ELA+GV ++R LG + PLAV PH A + + F Sbjct 140 VTLRVELDVGEATEVRQSVELAIGVLHRLLRGFLGGGWKPLAVCFPHPAPEDTATHRRLF 199 Query 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHR-VVVDYLSSITPLGE-GIVESVRTIVRQ 238 G F G + DL+ P D R L S P + IV VR ++ Sbjct 200 GPVLNFDHEFAGIVLEAGDLNAPNKMSDPLLRPYTQQLLESWEPSDDVTIVSRVRELIEL 259 Query 239 LLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHL 298 LLPTG ++ VA + +T+ RRLAE TF ++D R ++A+R + + LT + Sbjct 260 LLPTGRCSVEQVARSLGVDRRTVHRRLAESGETFSTVLDGTRTELAERMVANPRLNLTEI 319 Query 299 ARELGYAEQSVLTRSCKRWFGTGPAAYRNQ 328 A L ++ S +R + FG P+ +R Q Sbjct 320 ADMLAFSAPSNFSRWFRGRFGVSPSVWRAQ 349 >gi|221064904|ref|ZP_03541009.1| transcriptional regulator, AraC family [Comamonas testosteroni KF-1] gi|220709927|gb|EED65295.1| transcriptional regulator, AraC family [Comamonas testosteroni KF-1] Length=344 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 102/333 (31%), Positives = 149/333 (45%), Gaps = 11/333 (3%) Query 1 MSVVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVT 60 ++ VR +L N+ L + LGGDP LR AG+R V D I A R +E AA++T Sbjct 2 VTFVRAASLTNFSELFSELGGDPDAALRRAGLRPAVVREQDQLIDALTAGRLLEEAASIT 61 Query 61 ATMDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQR 120 +FG R+AQ + + G V + T+ L+ + + + I + G Sbjct 62 GCENFGLRMAQSRQVSNFGVVSLLLLHQPTLRKVLSTLIEHVHMLNESLVIHMDDANG-- 119 Query 121 SFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 + L P + PQ+MELA+GV LLL + PL V H + Q F Sbjct 120 -VVVLREEFTLPDALPQSMELAIGVLFRTCNLLLHEQWRPLRVCFSHPAPCNTGLHKQMF 178 Query 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITPLGE-----GIVESVRTI 235 CR F G RT DL P + +A V+V Y ++ + + + VR Sbjct 179 RCRVEFDADFNGIVFRTEDLDAP---NPLADPVLVRYAKTMVDTTQQGRQASVGQQVRKA 235 Query 236 VRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGL 295 + +LP+G AT VA+ +TLQR L E +F L+ VR D+A RY+R + Sbjct 236 IYLMLPSGNATCICVAQGLGRSVRTLQRELDGEGLSFTGLLQEVRSDLARRYVRNPDYPV 295 Query 296 THLARELGYAEQSVLTRSCKRWFGTGPAAYRNQ 328 +A LGY S TR FG P +R + Sbjct 296 GQIATMLGYNSHSAFTRWFGTLFGCPPEVWRER 328 >gi|94500673|ref|ZP_01307203.1| transcriptional regulator, AraC family protein [Oceanobacter sp. RED65] gi|94427228|gb|EAT12208.1| transcriptional regulator, AraC family protein [Oceanobacter sp. RED65] Length=338 Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 97/330 (30%), Positives = 161/330 (49%), Gaps = 11/330 (3%) Query 4 VRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTATM 63 +R +L ++ LV LGGD TLL + D+ ++ I + ++ ++ +A T Sbjct 5 IRSGSLQSFSRLVKSLGGDSETLLTQCNLTQDDLRQHEHRIEFESMVKLLDLSATELKTP 64 Query 64 DFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRI---TPLAGQR 120 DF RLA+ QGI+ LGP+G+ + +ATV DAL +MA +S R+ LA Sbjct 65 DFALRLAKLQGIQALGPLGLLIQNSATVRDALLAAQRYMAIHSQGEYWRLDEEDELAYIE 124 Query 121 SFIALEFLLDEPASYP-QTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQY 179 + A L SY Q EL+ GV L + + L+G D P + H P++ Y + Sbjct 125 RYEAFHGL-----SYARQYKELSFGVCLRLAKSLMGEDIEPRCLEFAHAPISDPQIYRNH 179 Query 180 FGCRPYFAERVGGFTMRTADLSRPL-NRDDVAHRVVVDYLSSITPLGEGIVE-SVRTIVR 237 F C+ F + + A L RP+ + + V YL ++ EG +E V+T++ Sbjct 180 FNCQVLFNQEHDRLVVPKALLDRPIPEASEAEYAQVEQYLQAMIQPFEGDLERQVQTLIL 239 Query 238 QLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTH 297 Q L ++ + LH +TLQRRL +++ F +++ VR A L ++ + +T Sbjct 240 QTLGLKEHSIENIGAMLGLHKRTLQRRLKDQSLNFKEILNDVRVRTACWQLESSNMDMTL 299 Query 298 LARELGYAEQSVLTRSCKRWFGTGPAAYRN 327 L+ LGY++ S +R+ K G P +R Sbjct 300 LSEMLGYSDVSAFSRAFKTRMGISPLKWRK 329 >gi|77458986|ref|YP_348492.1| AraC family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382989|gb|ABA74502.1| Putative transcriptional Regulator, AraC family [Pseudomonas fluorescens Pf0-1] Length=350 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/329 (30%), Positives = 156/329 (48%), Gaps = 7/329 (2%) Query 4 VRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTATM 63 +R +L + G +P +LR A + + + +S R R + + Sbjct 7 IRAISLTGFDPFARRQGLEPNRMLRQACLSVASLQRPEDILSFRNYCRLLTLCRQRSNNA 66 Query 64 DFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQRSFI 123 FG QG+++ G + TVGDAL A Y+ + + G Sbjct 67 LFGLEFGLHQGVDVFGDMFFLIHNTRTVGDALRELRANFALYNGAAHLYLEVADG---IA 123 Query 124 ALEFLLDEPA--SYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYFG 181 L + DE Q ELA GV L +++ L A + P A+ L H PL E Y Q Sbjct 124 LLGYRADEQEIDGLAQAEELACGVGLRLMQTLASAPWQPEAIMLRHAPLADEGLYRQALN 183 Query 182 CRPYFAERVGGFTMRTADLSRPLN-RDDVAHRVVVDYLSSITPLG-EGIVESVRTIVRQL 239 P F+ G + L++PL+ +V H+++ ++L+ I L + + VR ++R L Sbjct 184 ITPTFSAAHTGLLFNASVLAQPLDCASEVLHQLIAEHLAGIERLSTDAMPGYVRQLLRNL 243 Query 240 LPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHLA 299 LP+G AT++ VA+ + P++LQR LAEENT+F L+D R+ +A +YL+ I L +A Sbjct 244 LPSGRATIDRVADCMAVTPRSLQRHLAEENTSFQQLLDETRQQLARKYLQVPTISLPQVA 303 Query 300 RELGYAEQSVLTRSCKRWFGTGPAAYRNQ 328 LGYA+ S +R+ RWFG + Q Sbjct 304 HLLGYADVSTFSRAFHRWFGVSVLEWCRQ 332 >gi|111020773|ref|YP_703745.1| AraC family transcriptional regulator [Rhodococcus jostii RHA1] gi|110820303|gb|ABG95587.1| probable transcriptional regulator, AraC family protein [Rhodococcus jostii RHA1] Length=336 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 101/330 (31%), Positives = 155/330 (47%), Gaps = 7/330 (2%) Query 3 VVRGTALANYPSLVAGLGGDPATLLRAAGVRDQDVGNYDAFISIRAAIRAIESAAAVTAT 62 + R +L Y L LG +PA LLR+AG+ +G D +I A +E++ + + Sbjct 4 LARYASLNGYVELCRSLGLEPAPLLRSAGLDPSGLGLQDRWIPAAAIAWLLEASVSASGY 63 Query 63 MDFGRRLAQRQGIEILGPVGVAARTAATVGDALAIFNTFMAAYSPVIAIRITPLAGQRSF 122 DFG RLA+R+ LGP+ + R V AL + + Y+ + R++ G Sbjct 64 DDFGLRLAERRQFSNLGPLSLVVREEPDVRSALRVLTRYEHTYNEALRTRMSERGG---L 120 Query 123 IALEFLLD--EPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDPLTPEAFYLQYF 180 + L LD E Q++ELA+GV ++R LG + PLAV PH A + + F Sbjct 121 VTLRVELDVGETTEIRQSVELAVGVLHRLLRGFLGGGWKPLAVCFPHPAPPDTATHRRLF 180 Query 181 GCRPYFAERVGGFTMRTADLSRPLNRDDVAHR-VVVDYLSSITPLGE-GIVESVRTIVRQ 238 G F G + DL+ P D R L S P + IV VR ++ Sbjct 181 GPVVNFDHEFAGIVIEAGDLAAPNKMSDPLLRPYTQQLLESWEPSDDVTIVSRVRELIEL 240 Query 239 LLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVDRVRKDVADRYLRTTGIGLTHL 298 LLPTG ++ VA + +T+ RRLAE TF ++D R ++A+R + + LT + Sbjct 241 LLPTGRCSVEQVARSLGVDRRTVHRRLAESGETFSTVLDATRVELAERMVANPRLSLTEI 300 Query 299 ARELGYAEQSVLTRSCKRWFGTGPAAYRNQ 328 A L ++ S +R FG P+ +R Q Sbjct 301 ADMLAFSAPSNFSRWFSGRFGCSPSRWRTQ 330 Lambda K H 0.322 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 657685396884 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40