BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3746c

Length=111
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|31794916|ref|NP_857409.1|  PE family protein [Mycobacterium bo...   220    7e-56
gi|15843367|ref|NP_338404.1|  PE family protein [Mycobacterium tu...   219    8e-56
gi|289763927|ref|ZP_06523305.1|  PE family protein [Mycobacterium...   218    3e-55
gi|308372643|ref|ZP_07429349.2|  PE family protein [Mycobacterium...   213    6e-54
gi|118619500|ref|YP_907832.1|  PE family protein [Mycobacterium u...   120    5e-26
gi|240168503|ref|ZP_04747162.1|  PE family protein, PE34 [Mycobac...   119    1e-25
gi|240170200|ref|ZP_04748859.1|  PE family protein, PE34 [Mycobac...   103    6e-21
gi|57117163|ref|YP_178021.1|  PE family-related protein [Mycobact...  97.8    5e-19
gi|289443461|ref|ZP_06433205.1|  PE family protein [Mycobacterium...  96.7    1e-18
gi|289447594|ref|ZP_06437338.1|  PE family protein [Mycobacterium...  96.7    1e-18
gi|31795046|ref|NP_857539.1|  PE family-like protein [Mycobacteri...  96.3    1e-18
gi|340628844|ref|YP_004747296.1|  PE family-like protein [Mycobac...  96.3    1e-18
gi|15843503|ref|NP_338540.1|  hypothetical protein MT3986 [Mycoba...  95.9    2e-18
gi|289754074|ref|ZP_06513452.1|  predicted protein [Mycobacterium...  95.9    2e-18
gi|289750551|ref|ZP_06509929.1|  predicted protein [Mycobacterium...  95.9    2e-18
gi|289746084|ref|ZP_06505462.1|  PE family protein [Mycobacterium...  95.1    3e-18
gi|308406276|ref|ZP_07495784.2|  PE family protein [Mycobacterium...  94.7    4e-18
gi|289445474|ref|ZP_06435218.1|  PE family protein [Mycobacterium...  93.2    1e-17
gi|240170199|ref|ZP_04748858.1|  PE family protein [Mycobacterium...  89.7    1e-16
gi|183982898|ref|YP_001851189.1|  PE family protein [Mycobacteriu...  86.3    1e-15
gi|240168351|ref|ZP_04747010.1|  PPE family protein [Mycobacteriu...  74.7    4e-12
gi|118467647|ref|YP_884481.1|  PE family protein [Mycobacterium s...  72.4    2e-11
gi|323717455|gb|EGB26659.1|  PE family protein [Mycobacterium tub...  72.4    2e-11
gi|296164967|ref|ZP_06847522.1|  PE family protein [Mycobacterium...  71.6    4e-11
gi|183980219|ref|YP_001848510.1|  PE family protein, PE35 [Mycoba...  63.5    9e-09
gi|145221364|ref|YP_001132042.1|  PE-like protein [Mycobacterium ...  60.5    9e-08
gi|120401104|ref|YP_950933.1|  PE-like protein [Mycobacterium van...  56.6    1e-06
gi|108797049|ref|YP_637246.1|  PE-like protein [Mycobacterium sp....  54.7    5e-06
gi|183985418|ref|YP_001853709.1|  PE family protein [Mycobacteriu...  53.1    1e-05
gi|154295459|ref|XP_001548165.1|  predicted protein [Botryotinia ...  34.3    5.6  
gi|333917216|ref|YP_004490948.1|  HipA domain-containing protein ...  33.9    7.5  
gi|224154639|ref|XP_002337498.1|  predicted protein [Populus tric...  33.5    9.4  


>gi|31794916|ref|NP_857409.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57117152|ref|YP_178011.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|121639660|ref|YP_979884.1| putative PE family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 65 more sequence titles
 Length=111

 Score =  220 bits (560),  Expect = 7e-56, Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)

Query  1    MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
            MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG
Sbjct  1    MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60

Query  61   LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLEAIPRPGQTLARE  111
            LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLEAIPRPGQTLARE
Sbjct  61   LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLEAIPRPGQTLARE  111


>gi|15843367|ref|NP_338404.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|13883731|gb|AAK48218.1| PE family protein [Mycobacterium tuberculosis CDC1551]
Length=123

 Score =  219 bits (559),  Expect = 8e-56, Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)

Query  1    MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
            MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG
Sbjct  13   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  72

Query  61   LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLEAIPRPGQTLARE  111
            LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLEAIPRPGQTLARE
Sbjct  73   LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLEAIPRPGQTLARE  123


>gi|289763927|ref|ZP_06523305.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|289711433|gb|EFD75449.1| PE family protein [Mycobacterium tuberculosis GM 1503]
Length=111

 Score =  218 bits (554),  Expect = 3e-55, Method: Compositional matrix adjust.
 Identities = 110/111 (99%), Positives = 110/111 (99%), Gaps = 0/111 (0%)

Query  1    MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
            MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAV AFTTAATG
Sbjct  1    MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVMAFTTAATG  60

Query  61   LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLEAIPRPGQTLARE  111
            LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLEAIPRPGQTLARE
Sbjct  61   LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLEAIPRPGQTLARE  111


>gi|308372643|ref|ZP_07429349.2| PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308373806|ref|ZP_07433713.2| PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|308376214|ref|ZP_07438050.2| PE family protein [Mycobacterium tuberculosis SUMu008]
 9 more sequence titles
 Length=108

 Score =  213 bits (543),  Expect = 6e-54, Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%), Gaps = 0/108 (0%)

Query  4    MSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATGLLA  63
            MSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATGLLA
Sbjct  1    MSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATGLLA  60

Query  64   LNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLEAIPRPGQTLARE  111
            LNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLEAIPRPGQTLARE
Sbjct  61   LNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLEAIPRPGQTLARE  108


>gi|118619500|ref|YP_907832.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|183985254|ref|YP_001853545.1| PE family protein, PE34 [Mycobacterium marinum M]
 gi|118571610|gb|ABL06361.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|183178580|gb|ACC43690.1| PE family protein, PE34 [Mycobacterium marinum M]
Length=111

 Score =  120 bits (302),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 65/109 (60%), Positives = 78/109 (72%), Gaps = 0/109 (0%)

Query  1    MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
            MQSMS DP  ADIG+Q+   AF+GLQAGA A  S++S+ PAGA+EVS  A+ AFT  A  
Sbjct  1    MQSMSIDPVAADIGAQLAEGAFRGLQAGATAATSITSVRPAGADEVSTQAMLAFTKHAGQ  60

Query  61   LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLEAIPRPGQTLA  109
            +LALNQAAQEELR+AGE   AIARMY+D DV  A  L++   R G  LA
Sbjct  61   MLALNQAAQEELRRAGEAVNAIARMYADTDVAVARNLIDVGWRSGSALA  109


>gi|240168503|ref|ZP_04747162.1| PE family protein, PE34 [Mycobacterium kansasii ATCC 12478]
Length=111

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 71/105 (68%), Positives = 77/105 (74%), Gaps = 0/105 (0%)

Query  1    MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
            MQSMS DPA ADIG+QV +NA QGLQAGA A   L+SLLPAGA+EVSA AV AFT  A  
Sbjct  1    MQSMSIDPAAADIGAQVADNASQGLQAGATASTPLTSLLPAGADEVSAQAVAAFTAEAAQ  60

Query  61   LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLEAIPRPG  105
            LLALNQAAQEELR+AGE F  IARMY+D D  AA  L      PG
Sbjct  61   LLALNQAAQEELRRAGEAFADIARMYTDVDTTAATSLTGVGLLPG  105


>gi|240170200|ref|ZP_04748859.1| PE family protein, PE34 [Mycobacterium kansasii ATCC 12478]
Length=111

 Score =  103 bits (258),  Expect = 6e-21, Method: Compositional matrix adjust.
 Identities = 59/101 (59%), Positives = 71/101 (71%), Gaps = 0/101 (0%)

Query  1    MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
            MQ MSFDP VADIGSQV +   + LQAGA A  S++ L PAGA+EVSA AVTAF T A  
Sbjct  1    MQPMSFDPVVADIGSQVADLGTRSLQAGATAVSSVTGLAPAGADEVSAQAVTAFHTQAAS  60

Query  61   LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLEAI  101
            +LALNQAAQEEL + G  F  +A+ Y+D D  AA  +L A+
Sbjct  61   MLALNQAAQEELVRTGAAFRQVAQSYTDVDEAAAESVLLAL  101


>gi|57117163|ref|YP_178021.1| PE family-related protein [Mycobacterium tuberculosis H37Rv]
 gi|148663739|ref|YP_001285262.1| PPE family protein [Mycobacterium tuberculosis H37Ra]
 gi|167967454|ref|ZP_02549731.1| hypothetical protein MtubH3_05222 [Mycobacterium tuberculosis 
H37Ra]
 9 more sequence titles
 Length=99

 Score = 97.8 bits (242),  Expect = 5e-19, Method: Compositional matrix adjust.
 Identities = 50/99 (51%), Positives = 65/99 (66%), Gaps = 0/99 (0%)

Query  1   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
           M+ MS DP  ADIG+QV +NA  G+ AG+ A  S++ L+PAGA+EVSA A TAFT+    
Sbjct  1   MEKMSHDPIAADIGTQVSDNALHGVTAGSTALTSVTGLVPAGADEVSAQAATAFTSEGIQ  60

Query  61  LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLE  99
           LLA N +AQ++L +AGE    +AR YS  D  AA    E
Sbjct  61  LLASNASAQDQLHRAGEAVQDVARTYSQIDDGAAGVFAE  99


>gi|289443461|ref|ZP_06433205.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289416380|gb|EFD13620.1| PE family protein [Mycobacterium tuberculosis T46]
Length=215

 Score = 96.7 bits (239),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 53/98 (55%), Positives = 64/98 (66%), Gaps = 1/98 (1%)

Query  1   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWV-SLSSLLPAGAEEVSAWAVTAFTTAAT  59
           M S+S DPA  DIGSQ+V    +GL AG  A + +++ L+PAG EEVSA AV AF T A 
Sbjct  1   MDSLSHDPAAGDIGSQLVEIGSRGLAAGNAATMPTMTGLVPAGGEEVSAQAVMAFATEAA  60

Query  60  GLLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACL  97
            ++A N AAQEEL +AG   T IARMY D D  AA  L
Sbjct  61  SMIASNTAAQEELMRAGTALTDIARMYGDTDDNAAGAL  98


>gi|289447594|ref|ZP_06437338.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|340626986|ref|YP_004745438.1| pe family protein [Mycobacterium canettii CIPT 140010059]
 gi|289420552|gb|EFD17753.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|340005176|emb|CCC44325.1| pe family protein [Mycobacterium canettii CIPT 140010059]
Length=215

 Score = 96.7 bits (239),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 53/98 (55%), Positives = 64/98 (66%), Gaps = 1/98 (1%)

Query  1   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWV-SLSSLLPAGAEEVSAWAVTAFTTAAT  59
           M S+S DPA  DIGSQ+V    +GL AG  A + +++ L+PAG EEVSA AV AF T A 
Sbjct  1   MDSLSHDPAAGDIGSQLVEIGSRGLAAGNAATMPTMTGLVPAGGEEVSAQAVMAFATEAA  60

Query  60  GLLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACL  97
            ++A N AAQEEL +AG   T IARMY D D  AA  L
Sbjct  61  SMIASNTAAQEELMRAGTALTDIARMYGDTDDNAAGAL  98


>gi|31795046|ref|NP_857539.1| PE family-like protein [Mycobacterium bovis AF2122/97]
 gi|148825080|ref|YP_001289834.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|253800922|ref|YP_003033924.1| hypothetical protein TBMG_03920 [Mycobacterium tuberculosis KZN 
1435]
 47 more sequence titles
 Length=98

 Score = 96.3 bits (238),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 49/97 (51%), Positives = 64/97 (66%), Gaps = 0/97 (0%)

Query  1   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
           M+ MS DP  ADIG+QV +NA  G+ AG+ A  S++ L+PAGA+EVSA A TAFT+    
Sbjct  1   MEKMSHDPIAADIGTQVSDNALHGVTAGSTALTSVTGLVPAGADEVSAQAATAFTSEGIQ  60

Query  61  LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACL  97
           LLA N +AQ++L +AGE    +AR YS  D  AA   
Sbjct  61  LLASNASAQDQLHRAGEAVQDVARTYSQIDDGAAGVF  97


>gi|340628844|ref|YP_004747296.1| PE family-like protein [Mycobacterium canettii CIPT 140010059]
 gi|340007034|emb|CCC46225.1| PE family-related protein [Mycobacterium canettii CIPT 140010059]
Length=98

 Score = 96.3 bits (238),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 49/97 (51%), Positives = 64/97 (66%), Gaps = 0/97 (0%)

Query  1   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
           M+ MS DP  ADIG+QV +NA  G+ AG+ A  S++ L+PAGA+EVSA A TAFT+    
Sbjct  1   MEKMSHDPIAADIGTQVSDNALHGVTAGSTALTSVTGLVPAGADEVSAQAATAFTSEGIQ  60

Query  61  LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACL  97
           LLA N +AQ++L +AGE    +AR YS  D  AA   
Sbjct  61  LLASNVSAQDQLHRAGEAVQDVARTYSQVDDGAAGVF  97


>gi|15843503|ref|NP_338540.1| hypothetical protein MT3986 [Mycobacterium tuberculosis CDC1551]
 gi|289572130|ref|ZP_06452357.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289764062|ref|ZP_06523440.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|13883877|gb|AAK48354.1| hypothetical protein MT3986 [Mycobacterium tuberculosis CDC1551]
 gi|289545885|gb|EFD49532.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289711568|gb|EFD75584.1| PE family protein [Mycobacterium tuberculosis GM 1503]
Length=112

 Score = 95.9 bits (237),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 49/97 (51%), Positives = 64/97 (66%), Gaps = 0/97 (0%)

Query  1    MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
            M+ MS DP  ADIG+QV +NA  G+ AG+ A  S++ L+PAGA+EVSA A TAFT+    
Sbjct  15   MEKMSHDPIAADIGTQVSDNALHGVTAGSTALTSVTGLVPAGADEVSAQAATAFTSEGIQ  74

Query  61   LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACL  97
            LLA N +AQ++L +AGE    +AR YS  D  AA   
Sbjct  75   LLASNASAQDQLHRAGEAVQDVARTYSQIDDGAAGVF  111


>gi|289754074|ref|ZP_06513452.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289694661|gb|EFD62090.1| predicted protein [Mycobacterium tuberculosis EAS054]
Length=255

 Score = 95.9 bits (237),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 53/98 (55%), Positives = 64/98 (66%), Gaps = 1/98 (1%)

Query  1    MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWV-SLSSLLPAGAEEVSAWAVTAFTTAAT  59
            M S+S DPA  DIGSQ+V    +GL AG  A + +++ L+PAG EEVSA AV AF T A 
Sbjct  41   MDSLSHDPAAGDIGSQLVEIGSRGLAAGNAATMPTMTGLVPAGGEEVSAQAVMAFATEAA  100

Query  60   GLLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACL  97
             ++A N AAQEEL +AG   T IARMY D D  AA  L
Sbjct  101  SMIASNTAAQEELMRAGTALTDIARMYGDTDDNAAGAL  138


>gi|289750551|ref|ZP_06509929.1| predicted protein [Mycobacterium tuberculosis T92]
 gi|289691138|gb|EFD58567.1| predicted protein [Mycobacterium tuberculosis T92]
Length=255

 Score = 95.9 bits (237),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 53/98 (55%), Positives = 64/98 (66%), Gaps = 1/98 (1%)

Query  1    MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWV-SLSSLLPAGAEEVSAWAVTAFTTAAT  59
            M S+S DPA  DIGSQ+V    +GL AG  A + +++ L+PAG EEVSA AV AF T A 
Sbjct  41   MDSLSHDPAAGDIGSQLVEIGSRGLAAGNAATMPTMTGLVPAGGEEVSAQAVMAFATEAA  100

Query  60   GLLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACL  97
             ++A N AAQEEL +AG   T IARMY D D  AA  L
Sbjct  101  SMIASNTAAQEELMRAGTALTDIARMYGDTDDNAAGAL  138


>gi|289746084|ref|ZP_06505462.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|294996901|ref|ZP_06802592.1| PE family protein [Mycobacterium tuberculosis 210]
 gi|289686612|gb|EFD54100.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|326903584|gb|EGE50517.1| hypothetical protein TBPG_01460 [Mycobacterium tuberculosis W-148]
 gi|339294902|gb|AEJ47013.1| PE family protein [Mycobacterium tuberculosis CCDC5079]
 gi|339298525|gb|AEJ50635.1| PE family protein [Mycobacterium tuberculosis CCDC5180]
Length=163

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 53/98 (55%), Positives = 64/98 (66%), Gaps = 1/98 (1%)

Query  1   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWV-SLSSLLPAGAEEVSAWAVTAFTTAAT  59
           M S+S DPA  DIGSQ+V    +GL AG  A + +++ L+PAG EEVSA AV AF T A 
Sbjct  1   MDSLSHDPAAGDIGSQLVEIGSRGLAAGNAATMPTMTGLVPAGGEEVSAQAVMAFATEAA  60

Query  60  GLLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACL  97
            ++A N AAQEEL +AG   T IARMY D D  AA  L
Sbjct  61  SMIASNTAAQEELMRAGTALTDIARMYGDTDDNAAGAL  98


>gi|308406276|ref|ZP_07495784.2| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|308363936|gb|EFP52787.1| PE family protein [Mycobacterium tuberculosis SUMu012]
Length=96

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 49/96 (52%), Positives = 63/96 (66%), Gaps = 0/96 (0%)

Query  4   MSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATGLLA  63
           MS DP  ADIG+QV +NA  G+ AG+ A  S++ L+PAGA+EVSA A TAFT+    LLA
Sbjct  1   MSHDPIAADIGTQVSDNALHGVTAGSTALTSVTGLVPAGADEVSAQAATAFTSEGIQLLA  60

Query  64  LNQAAQEELRKAGEVFTAIARMYSDADVRAAACLLE  99
            N +AQ++L +AGE    +AR YS  D  AA    E
Sbjct  61  SNASAQDQLHRAGEAVQDVARTYSQIDDGAAGVFAE  96


>gi|289445474|ref|ZP_06435218.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|298527345|ref|ZP_07014754.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|289418432|gb|EFD15633.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|298497139|gb|EFI32433.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
Length=95

 Score = 93.2 bits (230),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 48/94 (52%), Positives = 62/94 (66%), Gaps = 0/94 (0%)

Query  4   MSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATGLLA  63
           MS DP  ADIG+QV +NA  G+ AG+ A  S++ L+PAGA+EVSA A TAFT+    LLA
Sbjct  1   MSHDPIAADIGTQVSDNALHGVTAGSTALTSVTGLVPAGADEVSAQAATAFTSEGIQLLA  60

Query  64  LNQAAQEELRKAGEVFTAIARMYSDADVRAAACL  97
            N +AQ++L +AGE    +AR YS  D  AA   
Sbjct  61  SNASAQDQLHRAGEAVQDVARTYSQIDDGAAGVF  94


>gi|240170199|ref|ZP_04748858.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=214

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 48/87 (56%), Positives = 60/87 (69%), Gaps = 1/87 (1%)

Query  1   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVS-LSSLLPAGAEEVSAWAVTAFTTAAT  59
           M +MS DP+  DIGSQ+V+   QG+ AG+ A ++ L+ L+PAGAEEVSA AV AF   A 
Sbjct  1   MDTMSHDPSAGDIGSQLVDIGSQGISAGSTAAMTVLTGLIPAGAEEVSAQAVMAFAQEAA  60

Query  60  GLLALNQAAQEELRKAGEVFTAIARMY  86
            +LA N AAQEEL + G   T IARMY
Sbjct  61  SMLASNVAAQEELMRTGSALTNIARMY  87


>gi|183982898|ref|YP_001851189.1| PE family protein [Mycobacterium marinum M]
 gi|183176224|gb|ACC41334.1| PE family protein [Mycobacterium marinum M]
Length=230

 Score = 86.3 bits (212),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 48/87 (56%), Positives = 58/87 (67%), Gaps = 1/87 (1%)

Query  1   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVS-LSSLLPAGAEEVSAWAVTAFTTAAT  59
           M  MS DPA  DIGSQ+V+   QG+ AG  A ++ L+ L+PAGAEEVSA AV AF   A 
Sbjct  1   MDPMSHDPAAGDIGSQLVDIGTQGISAGTTAAMTVLTGLIPAGAEEVSAQAVLAFAQEAA  60

Query  60  GLLALNQAAQEELRKAGEVFTAIARMY  86
            +LA N AAQEEL + G   + IARMY
Sbjct  61  TMLASNVAAQEELMRTGTALSDIARMY  87


>gi|240168351|ref|ZP_04747010.1| PPE family protein [Mycobacterium kansasii ATCC 12478]
Length=98

 Score = 74.7 bits (182),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 48/97 (50%), Positives = 62/97 (64%), Gaps = 0/97 (0%)

Query  1   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
           M+ MS   A ADIG QV +NA  G+ AGA A  S++ L+PAGA+EVSA A  AF +A   
Sbjct  1   MEEMSHAAAAADIGGQVSDNALGGVAAGATAVTSVTGLVPAGADEVSAQAAAAFASAGAQ  60

Query  61  LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACL  97
           +LA N +AQ EL++AG+    IAR YS  D  AA  +
Sbjct  61  MLASNSSAQAELQRAGDAVQDIARTYSQVDDGAAGVV  97


>gi|118467647|ref|YP_884481.1| PE family protein [Mycobacterium smegmatis str. MC2 155]
 gi|118168934|gb|ABK69830.1| PE family protein [Mycobacterium smegmatis str. MC2 155]
Length=97

 Score = 72.4 bits (176),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 41/97 (43%), Positives = 58/97 (60%), Gaps = 0/97 (0%)

Query  1   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
           MQ M+ +P    + +QV+ NA +GL  G  A  ++++L+PAGA+EVSA A  AF +    
Sbjct  1   MQPMTHNPGAEAVAAQVIANAARGLAGGTTASAAVTALVPAGADEVSALAAVAFASEGVE  60

Query  61  LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACL  97
            LA N  AQEEL +AG  F  IA +Y+  D   AA +
Sbjct  61  ALAANAFAQEELTRAGAAFAEIAGIYNAVDAANAATM  97


>gi|323717455|gb|EGB26659.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
Length=82

 Score = 72.4 bits (176),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 38/79 (49%), Positives = 51/79 (65%), Gaps = 0/79 (0%)

Query  19  NNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATGLLALNQAAQEELRKAGEV  78
           +NA  G+ AG+ A  S++ L+PAGA+EVSA A TAFT+    LLA N +AQ++L +AGE 
Sbjct  3   DNALHGVTAGSTALTSVTGLVPAGADEVSAQAATAFTSEGIQLLASNASAQDQLHRAGEA  62

Query  79  FTAIARMYSDADVRAAACL  97
              +AR YS  D  AA   
Sbjct  63  VQDVARTYSQIDDGAAGVF  81


>gi|296164967|ref|ZP_06847522.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899615|gb|EFG79066.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=237

 Score = 71.6 bits (174),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 49/97 (51%), Positives = 61/97 (63%), Gaps = 0/97 (0%)

Query  1   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
           M+ M+ DPA   IG QVV  A QGL +GA A V++++L PAGA+EVS  AV AF      
Sbjct  1   MEPMTHDPAAGAIGLQVVEIATQGLASGAAASVAVTALAPAGADEVSIQAVAAFAAEGAA  60

Query  61  LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACL  97
           +LALN AAQEE+ + G   T IARMY+  D   A  L
Sbjct  61  MLALNTAAQEEMARTGVALTDIARMYAQVDGETAGTL  97


>gi|183980219|ref|YP_001848510.1| PE family protein, PE35 [Mycobacterium marinum M]
 gi|183173545|gb|ACC38655.1| PE family protein, PE35 [Mycobacterium marinum M]
Length=98

 Score = 63.5 bits (153),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 43/90 (48%), Positives = 57/90 (64%), Gaps = 0/90 (0%)

Query  1   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
           M+SMSFDPA A + + +  +A +GL AG  A  S++ L PAGA+E+SA    AF      
Sbjct  1   MRSMSFDPAAASVAAAISAHASRGLDAGTAAASSVTGLAPAGADEISAQFAAAFAAEGAQ  60

Query  61  LLALNQAAQEELRKAGEVFTAIARMYSDAD  90
           +LALN AAQ+EL +AG+    IA MYS  D
Sbjct  61  VLALNTAAQDELARAGQALRQIAGMYSAVD  90


>gi|145221364|ref|YP_001132042.1| PE-like protein [Mycobacterium gilvum PYR-GCK]
 gi|315441752|ref|YP_004074631.1| hypothetical protein Mspyr1_00620 [Mycobacterium sp. Spyr1]
 gi|145213850|gb|ABP43254.1| PE-like protein [Mycobacterium gilvum PYR-GCK]
 gi|315260055|gb|ADT96796.1| hypothetical protein Mspyr1_00620 [Mycobacterium sp. Spyr1]
Length=98

 Score = 60.5 bits (145),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 35/98 (36%), Positives = 51/98 (53%), Gaps = 0/98 (0%)

Query  1   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
           MQ ++ +PA A IG QV  N  +GL  G  A   +S+L PAG +E+SA A  +F +    
Sbjct  1   MQPLNHNPAAAGIGGQVTANGARGLGVGTAATAEVSALAPAGVDEISAVAALSFASEGIQ  60

Query  61  LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACLL  98
            L +N  AQ+E+ +AG      +  Y   D    A L+
Sbjct  61  TLGINAMAQQEIARAGATVIEASVAYEATDAANGAKLI  98


>gi|120401104|ref|YP_950933.1| PE-like protein [Mycobacterium vanbaalenii PYR-1]
 gi|119953922|gb|ABM10927.1| PE-like protein [Mycobacterium vanbaalenii PYR-1]
Length=98

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 37/98 (38%), Positives = 49/98 (50%), Gaps = 0/98 (0%)

Query  1   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
           MQ +S +P    +G QV  N  +GL  G  A  ++S+L PAGA+EVSA A   F      
Sbjct  1   MQPLSHNPGAIGVGGQVTANGARGLATGTAATSAVSALAPAGADEVSAAAAVTFAAEGIQ  60

Query  61  LLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACLL  98
            L +N  AQEE+ +AG      A  Y   D   A  L+
Sbjct  61  TLGINALAQEEIARAGASIIEAAGAYQAVDASNATTLI  98


>gi|108797049|ref|YP_637246.1| PE-like protein [Mycobacterium sp. MCS]
 gi|119866134|ref|YP_936086.1| PE domain-containing protein [Mycobacterium sp. KMS]
 gi|126432671|ref|YP_001068362.1| PE domain-containing protein [Mycobacterium sp. JLS]
 gi|108767468|gb|ABG06190.1| PE-like protein [Mycobacterium sp. MCS]
 gi|119692223|gb|ABL89296.1| PE domain protein [Mycobacterium sp. KMS]
 gi|126232471|gb|ABN95871.1| PE domain protein [Mycobacterium sp. JLS]
Length=97

 Score = 54.7 bits (130),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 41/90 (46%), Positives = 54/90 (60%), Gaps = 0/90 (0%)

Query  1   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
           MQ +  +P  A IG QVV N  +GL  G  A  ++++L+PAGA+EVSA A   F      
Sbjct  1   MQPLEHNPGAAGIGGQVVANGARGLAGGTAATAAVTALVPAGADEVSAMAAATFAAEGAE  60

Query  61  LLALNQAAQEELRKAGEVFTAIARMYSDAD  90
            LALN  AQEEL +AG  FT I+ +Y+  D
Sbjct  61  TLALNTFAQEELSRAGAAFTEISGIYAAVD  90


>gi|183985418|ref|YP_001853709.1| PE family protein [Mycobacterium marinum M]
 gi|183178744|gb|ACC43854.1| PE family protein [Mycobacterium marinum M]
Length=98

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 36/83 (44%), Positives = 50/83 (61%), Gaps = 0/83 (0%)

Query  1   MQSMSFDPAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTAATG  60
           M+  S   A+ADIG+ +  NA  G+ + A A  S++ ++PAGA+EVS  A TAF      
Sbjct  1   MEQKSHGAAIADIGTLLSGNARIGVTSDAAALASVTGVVPAGADEVSTQAATAFAAEGAQ  60

Query  61  LLALNQAAQEELRKAGEVFTAIA  83
           LLA + AAQ E+ +AGE    IA
Sbjct  61  LLASSSAAQREIHRAGESPHRIA  83


>gi|154295459|ref|XP_001548165.1| predicted protein [Botryotinia fuckeliana B05.10]
 gi|150844076|gb|EDN19269.1| predicted protein [Botryotinia fuckeliana B05.10]
Length=242

 Score = 34.3 bits (77),  Expect = 5.6, Method: Compositional matrix adjust.
 Identities = 18/68 (27%), Positives = 33/68 (49%), Gaps = 0/68 (0%)

Query  38   LLPAGAEEVSAWAVTAFTTAATGLLALNQAAQEELRKAGEVFTAIARMYSDADVRAAACL  97
            ++P      ++W++T  T  A G+L   QA +  + KA +    + R  +  +VR     
Sbjct  131  IMPNAEVRSTSWSLTEETQKAAGILGREQAIKNAISKADDYARVLGRKVAATEVRDNGTN  190

Query  98   LEAIPRPG  105
            L+A+ R G
Sbjct  191  LKAVKRKG  198


>gi|333917216|ref|YP_004490948.1| HipA domain-containing protein [Delftia sp. Cs1-4]
 gi|333747416|gb|AEF92593.1| HipA domain protein [Delftia sp. Cs1-4]
Length=462

 Score = 33.9 bits (76),  Expect = 7.5, Method: Compositional matrix adjust.
 Identities = 31/97 (32%), Positives = 41/97 (43%), Gaps = 9/97 (9%)

Query  1    MQSMSFD---PAVADI-----GSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVT  52
            ++S  FD   PA  D+     G   V+ A  G   G +  VSL  L      EV  WA T
Sbjct  277  LESERFDRSQPAPGDVPSVVPGDMPVSQAHPGSNPGRIGMVSLQVLNAQYVGEVDNWAAT  336

Query  53   AFTTAATGLLALNQAAQEELRKA-GEVFTAIARMYSD  88
            A   AA GL+    A    L +A G++     R Y +
Sbjct  337  ANRLAARGLITKADARSLRLLEAYGQLIANTDRHYGN  373


>gi|224154639|ref|XP_002337498.1| predicted protein [Populus trichocarpa]
 gi|222839475|gb|EEE77812.1| predicted protein [Populus trichocarpa]
Length=445

 Score = 33.5 bits (75),  Expect = 9.4, Method: Compositional matrix adjust.
 Identities = 31/92 (34%), Positives = 40/92 (44%), Gaps = 5/92 (5%)

Query  1    MQSMSFD---PAVADIGSQVVNNAFQGLQAGAVAWVSLSSLLPAGAEEVSAWAVTAFTTA  57
            ++S  FD   PA  D G   V+ A  G   G +  VSL  L      EV  WA TA   A
Sbjct  80   LESERFDRSQPAPGD-GDVPVSQAHPGSNPGRIGMVSLQVLNAQYVGEVDNWAATANRLA  138

Query  58   ATGLLALNQAAQEELRKA-GEVFTAIARMYSD  88
            A GL+    A    L +A G++     R Y +
Sbjct  139  ARGLITEADARSLRLLEAYGQLIANTDRHYGN  170



Lambda     K      H
   0.316    0.125    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128534824512


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40