BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3750c Length=130 Score E Sequences producing significant alignments: (Bits) Value gi|15610886|ref|NP_218267.1| excisionase [Mycobacterium tubercul... 258 2e-67 gi|308232554|ref|ZP_07416447.2| excisionase [Mycobacterium tuber... 231 2e-59 gi|308374972|ref|ZP_07442264.2| excisionase [Mycobacterium tuber... 214 4e-54 gi|240169751|ref|ZP_04748410.1| putative excisionase [Mycobacter... 134 4e-30 gi|294995338|ref|ZP_06801029.1| excisionase [Mycobacterium tuber... 128 3e-28 gi|256824359|ref|YP_003148319.1| excisionase family DNA-binding ... 107 6e-22 gi|227506262|ref|ZP_03936311.1| excisionase family DNA binding d... 106 1e-21 gi|86740561|ref|YP_480961.1| excisionase/Xis, DNA-binding [Frank... 102 2e-20 gi|256372400|ref|YP_003110224.1| excisionase family DNA binding ... 102 2e-20 gi|291445855|ref|ZP_06585245.1| excisionase/Xis [Streptomyces ro... 102 3e-20 gi|239988863|ref|ZP_04709527.1| putative excisionase [Streptomyc... 101 3e-20 gi|315504468|ref|YP_004083355.1| excisionase family DNA binding ... 100 6e-20 gi|111020495|ref|YP_703467.1| excisionase [Rhodococcus jostii RH... 98.6 3e-19 gi|227834293|ref|YP_002836000.1| putative excisionase [Corynebac... 98.2 3e-19 gi|120556292|ref|YP_960643.1| DNA binding domain-containing prot... 97.4 6e-19 gi|227549095|ref|ZP_03979144.1| excisionase family DNA binding d... 97.1 9e-19 gi|288959363|ref|YP_003449704.1| hypothetical protein AZL_025220... 96.3 1e-18 gi|226363764|ref|YP_002781546.1| hypothetical protein ROP_43540 ... 95.9 2e-18 gi|289704755|ref|ZP_06501177.1| toxin-antitoxin system, antitoxi... 94.7 3e-18 gi|54022970|ref|YP_117212.1| hypothetical protein nfa10030 [Noca... 94.0 7e-18 gi|260904670|ref|ZP_05912992.1| putative excisionase [Brevibacte... 93.6 8e-18 gi|319427819|gb|ADV55893.1| DNA binding domain protein, excision... 93.6 9e-18 gi|320534129|ref|ZP_08034669.1| toxin-antitoxin system, antitoxi... 93.2 1e-17 gi|343523133|ref|ZP_08760096.1| DNA binding domain protein, exci... 92.8 1e-17 gi|239918544|ref|YP_002958102.1| DNA-binding protein, excisionas... 92.4 2e-17 gi|325066647|ref|ZP_08125320.1| excisionase/Xis, DNA-binding pro... 92.4 2e-17 gi|281415246|ref|ZP_06246988.1| DNA-binding protein, excisionase... 92.4 2e-17 gi|329948013|ref|ZP_08294914.1| DNA binding domain, excisionase ... 92.4 2e-17 gi|255020303|ref|ZP_05292371.1| hypothetical protein ACA_2121 [A... 92.0 2e-17 gi|8517283|gb|AAF76245.1| putative excisionase [Arthrobacter sp.... 91.3 4e-17 gi|336319641|ref|YP_004599609.1| excisionase family DNA binding ... 91.3 4e-17 gi|188591384|ref|YP_001795983.1| conserved hypothetical protein;... 90.9 5e-17 gi|53803200|ref|YP_115043.1| hypothetical protein MCA2639 [Methy... 89.7 1e-16 gi|319950160|ref|ZP_08024095.1| hypothetical protein ES5_11366 [... 89.4 2e-16 gi|259419363|ref|ZP_05743279.1| excisionase domain protein [Sili... 89.4 2e-16 gi|126090284|ref|YP_001041739.1| DNA binding domain-containing p... 89.4 2e-16 gi|300693270|ref|YP_003749243.1| excisionase (DNA binding domain... 89.0 2e-16 gi|227874709|ref|ZP_03992867.1| excisionase domain protein [Mobi... 89.0 2e-16 gi|152982466|ref|YP_001354377.1| hypothetical protein mma_2687 [... 88.6 3e-16 gi|172037602|ref|YP_001804103.1| hypothetical protein cce_2689 [... 87.8 4e-16 gi|306818012|ref|ZP_07451746.1| type IIA topoisomerase (DNA gyra... 87.8 5e-16 gi|67920657|ref|ZP_00514177.1| Excisionase/Xis, DNA-binding [Cro... 87.8 5e-16 gi|251791311|ref|YP_003006032.1| DNA binding domain-containing p... 87.4 6e-16 gi|291453060|ref|ZP_06592450.1| type IIA topoisomerase [Streptom... 87.4 6e-16 gi|269219104|ref|ZP_06162958.1| toxin-antitoxin system, antitoxi... 87.4 6e-16 gi|253995597|ref|YP_003047661.1| excisionase family DNA-binding ... 87.4 7e-16 gi|319944270|ref|ZP_08018546.1| arginine 2-monooxygenase [Lautro... 87.0 7e-16 gi|254198291|ref|ZP_04904713.1| excisionase domain protein [Burk... 86.7 1e-15 gi|37526181|ref|NP_929525.1| hypothetical protein plu2268 [Photo... 86.7 1e-15 gi|83649088|ref|YP_437523.1| type IIA topoisomerase (DNA gyrase/... 86.7 1e-15 >gi|15610886|ref|NP_218267.1| excisionase [Mycobacterium tuberculosis H37Rv] gi|15843370|ref|NP_338407.1| excisionase, putative [Mycobacterium tuberculosis CDC1551] gi|31794920|ref|NP_857413.1| putative excisionase [Mycobacterium bovis AF2122/97] 65 more sequence titles Length=130 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%) Query 1 MTSLLEVLGAPEVSVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEA 60 MTSLLEVLGAPEVSVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEA Sbjct 1 MTSLLEVLGAPEVSVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEA 60 Query 61 ADLLNISRPTLVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDALG 120 ADLLNISRPTLVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDALG Sbjct 61 ADLLNISRPTLVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDALG 120 Query 121 ELQAALAEKK 130 ELQAALAEKK Sbjct 121 ELQAALAEKK 130 >gi|308232554|ref|ZP_07416447.2| excisionase [Mycobacterium tuberculosis SUMu001] gi|308371441|ref|ZP_07424986.2| excisionase [Mycobacterium tuberculosis SUMu003] gi|308380793|ref|ZP_07491105.2| excisionase [Mycobacterium tuberculosis SUMu011] gi|308213632|gb|EFO73031.1| excisionase [Mycobacterium tuberculosis SUMu001] gi|308328770|gb|EFP17621.1| excisionase [Mycobacterium tuberculosis SUMu003] gi|308360443|gb|EFP49294.1| excisionase [Mycobacterium tuberculosis SUMu011] gi|339296559|gb|AEJ48670.1| excisionase [Mycobacterium tuberculosis CCDC5079] gi|339300158|gb|AEJ52268.1| excisionase [Mycobacterium tuberculosis CCDC5180] Length=116 Score = 231 bits (590), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 115/116 (99%), Positives = 116/116 (100%), Gaps = 0/116 (0%) Query 15 VCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRL 74 +CGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRL Sbjct 1 MCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRL 60 Query 75 LEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDALGELQAALAEKK 130 LEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDALGELQAALAEKK Sbjct 61 LEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDALGELQAALAEKK 116 >gi|308374972|ref|ZP_07442264.2| excisionase [Mycobacterium tuberculosis SUMu007] gi|308376215|ref|ZP_07438058.2| excisionase [Mycobacterium tuberculosis SUMu008] gi|308347893|gb|EFP36744.1| excisionase [Mycobacterium tuberculosis SUMu007] gi|308351761|gb|EFP40612.1| excisionase [Mycobacterium tuberculosis SUMu008] Length=108 Score = 214 bits (544), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 108/108 (100%), Positives = 108/108 (100%), Gaps = 0/108 (0%) Query 23 MTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGRIPF 82 MTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGRIPF Sbjct 1 MTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGRIPF 60 Query 83 EKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDALGELQAALAEKK 130 EKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDALGELQAALAEKK Sbjct 61 EKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDALGELQAALAEKK 108 >gi|240169751|ref|ZP_04748410.1| putative excisionase [Mycobacterium kansasii ATCC 12478] Length=97 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 62/87 (72%), Positives = 77/87 (89%), Gaps = 0/87 (0%) Query 40 LSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGRIPFEKPGRHRRVSLDALLEY 99 +SQGKGI LVP H+ LTTQEAAD+LNISRPTLV+LLE+GRIP++KPGRHRR+ LDA+L Y Sbjct 1 MSQGKGIQLVPHHMALTTQEAADILNISRPTLVKLLEEGRIPYDKPGRHRRIRLDAVLAY 60 Query 100 QQETRSNRRAALGELSRDALGELQAAL 126 QQETR+ R+AAL E +RD+ E++AAL Sbjct 61 QQETRARRKAALQEATRDSADEIRAAL 87 >gi|294995338|ref|ZP_06801029.1| excisionase [Mycobacterium tuberculosis 210] Length=63 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 63/63 (100%), Positives = 63/63 (100%), Gaps = 0/63 (0%) Query 1 MTSLLEVLGAPEVSVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEA 60 MTSLLEVLGAPEVSVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEA Sbjct 1 MTSLLEVLGAPEVSVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEA 60 Query 61 ADL 63 ADL Sbjct 61 ADL 63 >gi|256824359|ref|YP_003148319.1| excisionase family DNA-binding protein [Kytococcus sedentarius DSM 20547] gi|256687752|gb|ACV05554.1| DNA-binding protein, excisionase family [Kytococcus sedentarius DSM 20547] Length=157 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 57/111 (52%), Positives = 74/111 (67%), Gaps = 4/111 (3%) Query 15 VCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRL 74 + G G+ + LPE + D L V AL +G G+++ P++ +LTTQEAAD L ISRPTLVR+ Sbjct 37 LVGANGERLLLPEAMYDVLRQVAEALDKGMGVTVAPKNARLTTQEAADFLGISRPTLVRM 96 Query 75 LEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELS----RDALGE 121 LE G IP EKPGRHR V L L++YQQ R+ RR AL ++ RD L E Sbjct 97 LERGEIPMEKPGRHRFVRLADLVDYQQHQRNQRREALERMALESERDGLYE 147 >gi|227506262|ref|ZP_03936311.1| excisionase family DNA binding domain protein [Corynebacterium striatum ATCC 6940] gi|227197144|gb|EEI77192.1| excisionase family DNA binding domain protein [Corynebacterium striatum ATCC 6940] Length=156 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/129 (52%), Positives = 80/129 (63%), Gaps = 7/129 (5%) Query 1 MTSLLEVLGAPEVSVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEA 60 ++ LE L P ++ G GQ + LPE L VV A+ QGKGI++ P LTTQEA Sbjct 4 VSRFLEQLEGP-AALVGPDGQAVALPEEAFSVLAEVVHAMRQGKGITVAPVDQLLTTQEA 62 Query 61 ADLLNISRPTLVRLLEDGRIPFEKP--GRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 AD L ISRPTLV+ LEDG I FE+P GRHRRV L LL+Y+ R+ RR AL EL Sbjct 63 ADFLGISRPTLVKKLEDGAIAFERPSGGRHRRVRLVDLLQYRDRQRTERRKALREL---- 118 Query 119 LGELQAALA 127 + E QAA A Sbjct 119 IAEAQAAGA 127 >gi|86740561|ref|YP_480961.1| excisionase/Xis, DNA-binding [Frankia sp. CcI3] gi|86567423|gb|ABD11232.1| Excisionase/Xis, DNA-binding [Frankia sp. CcI3] Length=174 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/107 (49%), Positives = 67/107 (63%), Gaps = 0/107 (0%) Query 11 PEVSVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPT 70 P + G G + LPEP+ + L V A+ G +++ P HL ++TQEAADLL ISR T Sbjct 41 PRPRLTGPDGHSVELPEPMFNVLLQVAAAMKAGLAVTVAPHHLTMSTQEAADLLRISRTT 100 Query 71 LVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRD 117 LVRLLE G IPFEKP RHR+V LD LLEY++ R A ++ D Sbjct 101 LVRLLESGAIPFEKPSRHRKVRLDDLLEYRRRQRHAADLAFADMVAD 147 >gi|256372400|ref|YP_003110224.1| excisionase family DNA binding domain-containing protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008984|gb|ACU54551.1| DNA binding domain protein, excisionase family [Acidimicrobium ferrooxidans DSM 10331] Length=184 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 53/102 (52%), Positives = 68/102 (67%), Gaps = 0/102 (0%) Query 17 GNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLE 76 G G+ + LP V L VV + QGK + P+ L LTTQEAAD L ISRPTLVRLLE Sbjct 52 GPDGENIPLPPEVYTVLRQVVEVMRQGKAALIAPQGLLLTTQEAADFLGISRPTLVRLLE 111 Query 77 DGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 +G IPFEKP RHRR+ L+ L+++Q ++RRA L +L+ A Sbjct 112 EGAIPFEKPNRHRRIRLEHLVDFQHRRSTDRRAVLDQLTEQA 153 >gi|291445855|ref|ZP_06585245.1| excisionase/Xis [Streptomyces roseosporus NRRL 15998] gi|291348802|gb|EFE75706.1| excisionase/Xis [Streptomyces roseosporus NRRL 15998] Length=174 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 72/100 (72%), Gaps = 0/100 (0%) Query 17 GNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLE 76 G G +LP V +AL VV AL++GK +++ P + LTTQEAADLL +SRPT V++L+ Sbjct 65 GPDGATHSLPPEVYEALMVVVHALAEGKAVTVAPVNTTLTTQEAADLLGVSRPTFVKILD 124 Query 77 DGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSR 116 +G +PF +PGRHRRV L +L+Y+++ R+ RR L EL+R Sbjct 125 EGGLPFNRPGRHRRVLLADVLDYKEKRRTQRRRGLDELTR 164 >gi|239988863|ref|ZP_04709527.1| putative excisionase [Streptomyces roseosporus NRRL 11379] Length=148 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 72/100 (72%), Gaps = 0/100 (0%) Query 17 GNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLE 76 G G +LP V +AL VV AL++GK +++ P + LTTQEAADLL +SRPT V++L+ Sbjct 39 GPDGATHSLPPEVYEALMVVVHALAEGKAVTVAPVNTTLTTQEAADLLGVSRPTFVKILD 98 Query 77 DGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSR 116 +G +PF +PGRHRRV L +L+Y+++ R+ RR L EL+R Sbjct 99 EGGLPFNRPGRHRRVLLADVLDYKEKRRTQRRRGLDELTR 138 >gi|315504468|ref|YP_004083355.1| excisionase family DNA binding domain-containing protein [Micromonospora sp. L5] gi|315411087|gb|ADU09204.1| DNA binding domain protein, excisionase family [Micromonospora sp. L5] Length=156 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 53/110 (49%), Positives = 71/110 (65%), Gaps = 0/110 (0%) Query 9 GAPEVSVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISR 68 G + G G + +P+ + L +VV ALS+G IS+ P + LTTQEAADLLNISR Sbjct 31 GRARARLVGPDGSEIEIPDELYGVLRDVVTALSEGLAISIAPHNTMLTTQEAADLLNISR 90 Query 69 PTLVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 PTLVRLL +G +P+ GRHRRV L +L+YQ+ TR RR L ++ +A Sbjct 91 PTLVRLLSEGEMPYTMRGRHRRVMLRDVLDYQERTRQARRRTLDRMTAEA 140 >gi|111020495|ref|YP_703467.1| excisionase [Rhodococcus jostii RHA1] gi|110820025|gb|ABG95309.1| possible excisionase [Rhodococcus jostii RHA1] Length=152 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 52/109 (48%), Positives = 71/109 (66%), Gaps = 1/109 (0%) Query 9 GAPEVSVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISR 68 G+ EVS+ G + LP+ VR L + V AL +G+ +++ P LTTQEAADLL I+R Sbjct 29 GSEEVSISSPGGS-VPLPDSVRGLLVDAVAALDRGQAVTVEPHRTMLTTQEAADLLGITR 87 Query 69 PTLVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRD 117 PTLVRLLE G+IP+ PGRHRRV L +L +QQ R+ R E++ + Sbjct 88 PTLVRLLEAGKIPYTSPGRHRRVELADVLAFQQGERARRGQVFEEMAHE 136 >gi|227834293|ref|YP_002836000.1| putative excisionase [Corynebacterium aurimucosum ATCC 700975] gi|262183023|ref|ZP_06042444.1| putative excisionase [Corynebacterium aurimucosum ATCC 700975] gi|227455309|gb|ACP34062.1| putative excisionase [Corynebacterium aurimucosum ATCC 700975] Length=178 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/120 (49%), Positives = 75/120 (63%), Gaps = 3/120 (2%) Query 1 MTSLLEVLGAPEVSVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEA 60 ++ LE L P ++ G+ GQ + LPE L V A+ QGK I++ P LTTQEA Sbjct 24 VSKFLERLEGPP-ALVGSDGQAVDLPEEALGVLSEAVRAMQQGKAITVAPVDQLLTTQEA 82 Query 61 ADLLNISRPTLVRLLEDGRIPFEKP--GRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 AD L ISRPTLV+ LEDG I FE+ G+HRRV L +L+Y+ E R+ RR AL EL +A Sbjct 83 ADFLGISRPTLVKKLEDGSIAFERTSGGKHRRVRLVDVLQYRDEQRAERRKALRELVSEA 142 >gi|120556292|ref|YP_960643.1| DNA binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120326141|gb|ABM20456.1| DNA binding domain, excisionase family [Marinobacter aquaeolei VT8] Length=150 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 51/106 (49%), Positives = 72/106 (68%), Gaps = 2/106 (1%) Query 12 EVSVCGNAGQP--MTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRP 69 ++S+ G+ G+ + LP V L +V+ +SQG ISL+P H +++TQ+AA+LLN+SRP Sbjct 35 QLSLRGSNGETDELVLPGHVLQILLDVLAEVSQGNAISLIPYHQEISTQDAANLLNVSRP 94 Query 70 TLVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELS 115 LVRLLE G IPF K G HRRV L +L Y+++ R AAL EL+ Sbjct 95 FLVRLLESGDIPFRKVGAHRRVKLQDVLSYKEQIDRQRHAALDELA 140 >gi|227549095|ref|ZP_03979144.1| excisionase family DNA binding domain protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078824|gb|EEI16787.1| excisionase family DNA binding domain protein [Corynebacterium lipophiloflavum DSM 44291] Length=175 Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 50/107 (47%), Positives = 69/107 (65%), Gaps = 2/107 (1%) Query 14 SVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVR 73 ++ G GQ + LPE + L ++V A+ GK I++ P LTTQEAAD L ISRPTLV+ Sbjct 41 ALLGPDGQTVPLPEEIFHVLVDIVSAMRIGKAITVAPVDQMLTTQEAADFLGISRPTLVK 100 Query 74 LLEDGRIPFEK--PGRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 LLE GR+PFE+ GRHRR+ LD ++ YQ+ R R L ++ +A Sbjct 101 LLETGRLPFERVAGGRHRRIRLDDVIRYQESKRRESRETLASMTAEA 147 >gi|288959363|ref|YP_003449704.1| hypothetical protein AZL_025220 [Azospirillum sp. B510] gi|288911671|dbj|BAI73160.1| hypothetical protein AZL_025220 [Azospirillum sp. B510] Length=149 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 48/107 (45%), Positives = 67/107 (63%), Gaps = 0/107 (0%) Query 12 EVSVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTL 71 E V + GQ + LP V+ L +++ +S G ++L+P H ++TTQEAAD LN+SRP L Sbjct 36 EFRVHLDDGQTLALPRAVKQLLAHLLTEMSHGNAVTLIPIHAEMTTQEAADYLNVSRPHL 95 Query 72 VRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 V+LLE+G IPF K G HRRV L Y+ ++R AL EL+ A Sbjct 96 VKLLEEGTIPFHKVGSHRRVRFRDLKSYKDRITADRAKALDELAAQA 142 >gi|226363764|ref|YP_002781546.1| hypothetical protein ROP_43540 [Rhodococcus opacus B4] gi|226242253|dbj|BAH52601.1| hypothetical protein [Rhodococcus opacus B4] Length=148 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 48/109 (45%), Positives = 73/109 (67%), Gaps = 1/109 (0%) Query 9 GAPEVSVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISR 68 G +V++ G ++LP+ VR L++ V AL +G+ +++ P LTTQEAA+LL I+R Sbjct 25 GQDDVTISTPEGS-VSLPDSVRGLLFDAVTALDRGQAVTVEPHRTVLTTQEAAELLGITR 83 Query 69 PTLVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRD 117 PTLVRLLE G+IP+ PGRHRRV L +L ++Q+ R+ R E++ + Sbjct 84 PTLVRLLEAGKIPYSSPGRHRRVELADVLAFRQQERARRGQVFEEMAHE 132 >gi|289704755|ref|ZP_06501177.1| toxin-antitoxin system, antitoxin component, MerR family [Micrococcus luteus SK58] gi|289558515|gb|EFD51784.1| toxin-antitoxin system, antitoxin component, MerR family [Micrococcus luteus SK58] Length=170 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/107 (50%), Positives = 72/107 (68%), Gaps = 2/107 (1%) Query 14 SVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVR 73 ++ G GQ + LP + L +VV A+ GK I++ P LTTQEAA+ L ISRPTLV+ Sbjct 35 ALLGPDGQTVPLPLEAFNVLRDVVEAMRVGKAITVAPVDQMLTTQEAANFLGISRPTLVK 94 Query 74 LLEDGRIPFEKP--GRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 LLE G++P+E P GRHRR+ L ++EYQ+ R +RRAAL EL+ A Sbjct 95 LLESGQLPYELPSGGRHRRLRLQDVVEYQERKRRDRRAALQELAGSA 141 >gi|54022970|ref|YP_117212.1| hypothetical protein nfa10030 [Nocardia farcinica IFM 10152] gi|54014478|dbj|BAD55848.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=155 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 49/105 (47%), Positives = 67/105 (64%), Gaps = 2/105 (1%) Query 13 VSVCGNAG--QPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPT 70 V V G +P+ LP V D + ++ + G+G+SLVP + +LTTQ+AAD+LN+SRP Sbjct 43 VPVTAETGPDEPLVLPRAVVDMVAFILAQAAAGRGVSLVPSNAELTTQQAADILNVSRPY 102 Query 71 LVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELS 115 +V LLE G IPF G HRR+ D L EYQ+ + + RAA ELS Sbjct 103 VVGLLESGEIPFRLVGTHRRIRFDDLKEYQRRSEGHSRAAADELS 147 >gi|260904670|ref|ZP_05912992.1| putative excisionase [Brevibacterium linens BL2] Length=174 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 44/105 (42%), Positives = 70/105 (67%), Gaps = 1/105 (0%) Query 11 PEVSVCG-NAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRP 69 P + G +AG + LP + + L V A+ G +++ P L +TTQ+AA+LL I+RP Sbjct 39 PHFYLSGPDAGDQVELPHEIYEILVKAVDAMRSGMAVTITPNSLTMTTQQAAELLGITRP 98 Query 70 TLVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGEL 114 TLV+LL++G+IPFEKP HRRV L +L Y+++ ++ + AA+ E+ Sbjct 99 TLVKLLDEGKIPFEKPNTHRRVRLADVLAYKEQRKAEQHAAIAEM 143 >gi|319427819|gb|ADV55893.1| DNA binding domain protein, excisionase family [Shewanella putrefaciens 200] Length=149 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 44/109 (41%), Positives = 68/109 (63%), Gaps = 2/109 (1%) Query 10 APEVSVCGNAGQP--MTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNIS 67 A ++SV GQ +TLP V + V+ L QG +++ P H ++TTQ+ AD LN+S Sbjct 32 AQQISVIDKLGQSHDVTLPSSVLKMMIEVLTQLGQGNSVNITPIHAEMTTQQGADFLNMS 91 Query 68 RPTLVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSR 116 RPT ++LL+ G IPF + G R+V+ A+++Y+Q+ R + L ELSR Sbjct 92 RPTFIKLLDSGEIPFVRVGNRRKVAFSAVIKYKQQLERQRLSTLDELSR 140 >gi|320534129|ref|ZP_08034669.1| toxin-antitoxin system, antitoxin component, MerR family [Actinomyces sp. oral taxon 171 str. F0337] gi|320133649|gb|EFW26057.1| toxin-antitoxin system, antitoxin component, MerR family [Actinomyces sp. oral taxon 171 str. F0337] Length=161 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/118 (45%), Positives = 73/118 (62%), Gaps = 0/118 (0%) Query 1 MTSLLEVLGAPEVSVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEA 60 T L+ L A + G+ + LP V +AL VV A+ +G +++ P+ +LTTQEA Sbjct 20 FTELVTELEASSGAALTINGETIDLPPAVAEALLQVVDAMRRGLAVTVAPQDQRLTTQEA 79 Query 61 ADLLNISRPTLVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 AD+L ISRPTLVR+LE G IPFEK RHRR+ L +LE+++ R AL ++ DA Sbjct 80 ADMLGISRPTLVRMLEAGEIPFEKVRRHRRLFLTDVLEFRERQRRAANEALSDMVADA 137 >gi|343523133|ref|ZP_08760096.1| DNA binding domain protein, excisionase family [Actinomyces sp. oral taxon 175 str. F0384] gi|343400583|gb|EGV13099.1| DNA binding domain protein, excisionase family [Actinomyces sp. oral taxon 175 str. F0384] Length=190 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/99 (49%), Positives = 67/99 (68%), Gaps = 0/99 (0%) Query 20 GQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGR 79 G+ + LP V +AL VV A+ +G +++ P+ +LTTQEAAD+L ISRPTLVR+LE G Sbjct 68 GETIDLPPAVAEALLQVVDAMRRGLAVTVAPQDQRLTTQEAADMLGISRPTLVRMLEAGE 127 Query 80 IPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 IPFEK RHRR+ L +LE+++ R AL ++ DA Sbjct 128 IPFEKVRRHRRLFLTDVLEFRERQRRAANEALSDMVADA 166 >gi|239918544|ref|YP_002958102.1| DNA-binding protein, excisionase family [Micrococcus luteus NCTC 2665] gi|239839751|gb|ACS31548.1| DNA-binding protein, excisionase family [Micrococcus luteus NCTC 2665] Length=170 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/107 (48%), Positives = 70/107 (66%), Gaps = 2/107 (1%) Query 14 SVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVR 73 ++ G GQ + LP + L +VV A+ GK I++ P LTTQEAA+ L ISRPTLVR Sbjct 35 ALVGPDGQKVPLPPEAFNVLRDVVEAMRVGKAITVAPVDQLLTTQEAANFLGISRPTLVR 94 Query 74 LLEDGRIPFEKP--GRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 LLE+G +P+E+ GRHRR+ L ++ YQQ R RRA+L +L +A Sbjct 95 LLEEGALPYERTTGGRHRRIRLQDVVSYQQRKRGERRASLSDLVGEA 141 >gi|325066647|ref|ZP_08125320.1| excisionase/Xis, DNA-binding protein [Actinomyces oris K20] Length=163 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/99 (49%), Positives = 67/99 (68%), Gaps = 0/99 (0%) Query 20 GQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGR 79 G+ + LP V +AL VV A+ +G +++ P+ +LTTQEAAD+L ISRPTLVR+LE G Sbjct 41 GETIDLPPAVAEALLQVVDAMRRGLAVTVAPQDQRLTTQEAADMLGISRPTLVRMLEAGE 100 Query 80 IPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 IPFEK RHRR+ L +LE+++ R AL ++ DA Sbjct 101 IPFEKVRRHRRLFLTDVLEFRERQRRAANEALSDMVADA 139 >gi|281415246|ref|ZP_06246988.1| DNA-binding protein, excisionase family [Micrococcus luteus NCTC 2665] Length=160 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/107 (48%), Positives = 70/107 (66%), Gaps = 2/107 (1%) Query 14 SVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVR 73 ++ G GQ + LP + L +VV A+ GK I++ P LTTQEAA+ L ISRPTLVR Sbjct 25 ALVGPDGQKVPLPPEAFNVLRDVVEAMRVGKAITVAPVDQLLTTQEAANFLGISRPTLVR 84 Query 74 LLEDGRIPFEKP--GRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 LLE+G +P+E+ GRHRR+ L ++ YQQ R RRA+L +L +A Sbjct 85 LLEEGALPYERTTGGRHRRIRLQDVVSYQQRKRGERRASLSDLVGEA 131 >gi|329948013|ref|ZP_08294914.1| DNA binding domain, excisionase family [Actinomyces sp. oral taxon 170 str. F0386] gi|328523152|gb|EGF50253.1| DNA binding domain, excisionase family [Actinomyces sp. oral taxon 170 str. F0386] Length=163 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/99 (49%), Positives = 67/99 (68%), Gaps = 0/99 (0%) Query 20 GQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGR 79 G+ + LP V +AL VV A+ +G +++ P+ +LTTQEAAD+L ISRPTLVR+LE G Sbjct 41 GETIDLPPAVAEALLQVVDAMRRGLAVTVAPQDQRLTTQEAADMLGISRPTLVRMLEAGE 100 Query 80 IPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 IPFEK RHRR+ L +LE+++ R AL ++ DA Sbjct 101 IPFEKVRRHRRLFLTDVLEFRERQRRAANEALSDMVADA 139 >gi|255020303|ref|ZP_05292371.1| hypothetical protein ACA_2121 [Acidithiobacillus caldus ATCC 51756] gi|254970223|gb|EET27717.1| hypothetical protein ACA_2121 [Acidithiobacillus caldus ATCC 51756] Length=153 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 64/100 (64%), Gaps = 0/100 (0%) Query 19 AGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDG 78 A + +TLP L +V+ + QG ++++P H +LTTQEAADLLN+SRP LV+LLE G Sbjct 47 AVRSVTLPTTALRLLLDVLTEIGQGNAVTVIPIHAELTTQEAADLLNVSRPFLVQLLEKG 106 Query 79 RIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 IPF K G HRRV ++ Y+ + RR AL EL+ A Sbjct 107 EIPFHKIGTHRRVRYQDVIAYKHRIDAERRKALDELAAQA 146 >gi|8517283|gb|AAF76245.1| putative excisionase [Arthrobacter sp. TM1] Length=174 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 46/114 (41%), Positives = 75/114 (66%), Gaps = 6/114 (5%) Query 10 APEVSVCG-NAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISR 68 +P+ + G +AG + +P + + L V A+ +G I++ P + LTTQ+AA+LL ++R Sbjct 38 SPQFFLSGADAGDQVEIPHEIYEVLVKTVEAMRKGLAITITPSSMTLTTQQAAELLGVTR 97 Query 69 PTLVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDALGEL 122 PTLVRLL+ G+IPFEKPG HRR+ L+ +L +++ ++ + AL D+LG L Sbjct 98 PTLVRLLDAGKIPFEKPGTHRRIKLEDVLAFKEVRKAEQYEAL-----DSLGVL 146 >gi|336319641|ref|YP_004599609.1| excisionase family DNA binding domain-containing protein [Cellvibrio gilvus ATCC 13127] gi|336103222|gb|AEI11041.1| DNA binding domain protein, excisionase family [Cellvibrio gilvus ATCC 13127] Length=163 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 53/116 (46%), Positives = 73/116 (63%), Gaps = 0/116 (0%) Query 4 LLEVLGAPEVSVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADL 63 L +L P ++ G G + LP V D L V+ A+ +G+ I + P +LTT +AA+L Sbjct 22 LTRMLQQPSATLRGPDGSEVVLPVEVHDVLVQVLEAMQRGQAIMVAPVATRLTTSQAAEL 81 Query 64 LNISRPTLVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDAL 119 L ISRPTLV+LLE+ IPFEK RHRRV LD +L Y+ R RR+ L E++R A+ Sbjct 82 LGISRPTLVKLLENHEIPFEKTTRHRRVRLDDVLAYRDRRRVERRSVLDEMTRQAV 137 >gi|188591384|ref|YP_001795983.1| conserved hypothetical protein; DNA binding domain, excisionase family [Cupriavidus taiwanensis] gi|339328512|ref|YP_004688204.1| hypothetical protein CNE_BB1p07490 [Cupriavidus necator N-1] gi|170938779|emb|CAP63772.1| conserved hypothetical protein; DNA binding domain, excisionase family [Cupriavidus taiwanensis LMG 19424] gi|338171113|gb|AEI82166.1| hypothetical protein CNE_BB1p07490 [Cupriavidus necator N-1] Length=153 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/98 (48%), Positives = 60/98 (62%), Gaps = 0/98 (0%) Query 21 QPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGRI 80 +TLP L V+ + QG +S++P H +LTTQEAADLLN+SRP LV+LLE G I Sbjct 49 HSVTLPTSALRLLVEVLAEIGQGNAVSIIPIHAELTTQEAADLLNVSRPYLVQLLEKGEI 108 Query 81 PFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 PF K HRRV ++ Y+Q RR AL EL+ A Sbjct 109 PFRKVNTHRRVLYQDVVSYKQRIDDERRKALDELAAQA 146 >gi|53803200|ref|YP_115043.1| hypothetical protein MCA2639 [Methylococcus capsulatus str. Bath] gi|53756961|gb|AAU91252.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length=153 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 64/100 (64%), Gaps = 0/100 (0%) Query 19 AGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDG 78 A + +++P L +V+ + QG +S++P H +LTTQEAAD+LN+SRP LV+LLE G Sbjct 47 AVRTVSIPTSALRLLLDVLTEIGQGNAVSIIPIHAELTTQEAADVLNVSRPFLVQLLEKG 106 Query 79 RIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 IPF K G HRRV ++ Y+ + RR AL EL+ A Sbjct 107 DIPFHKIGTHRRVRYQDVIAYKNRIDAERRKALDELAAQA 146 >gi|319950160|ref|ZP_08024095.1| hypothetical protein ES5_11366 [Dietzia cinnamea P4] gi|319436174|gb|EFV91359.1| hypothetical protein ES5_11366 [Dietzia cinnamea P4] Length=154 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/92 (52%), Positives = 60/92 (66%), Gaps = 1/92 (1%) Query 9 GAPEVSVCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISR 68 G VS+ G L E VR L + V AL++G+ +++ P+ LTTQEAA+ L ISR Sbjct 31 GGRAVSISTEDGT-FGLTESVRSVLVDAVTALARGQAVTVEPQRTTLTTQEAAERLGISR 89 Query 69 PTLVRLLEDGRIPFEKPGRHRRVSLDALLEYQ 100 PTLVRLLE GRIP+ PGRHRRV L +L +Q Sbjct 90 PTLVRLLEQGRIPYTTPGRHRRVKLADVLAFQ 121 >gi|259419363|ref|ZP_05743279.1| excisionase domain protein [Silicibacter sp. TrichCH4B] gi|259344604|gb|EEW56491.1| excisionase domain protein [Silicibacter sp. TrichCH4B] Length=154 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/99 (46%), Positives = 66/99 (67%), Gaps = 0/99 (0%) Query 17 GNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLE 76 G + +TL + +L V+ +S G+G ++P +LTTQ+AADLLN+SRP LV+LLE Sbjct 47 GGELRTVTLAPALTASLLEVLRLVSSGRGFRMIPVESELTTQQAADLLNVSRPFLVKLLE 106 Query 77 DGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELS 115 +G IPF K GRHRRV D L Y+++ ++R AL +L+ Sbjct 107 EGEIPFAKTGRHRRVRADDLFAYKEKRDASRSDALSDLA 145 >gi|126090284|ref|YP_001041739.1| DNA binding domain-containing protein [Shewanella baltica OS155] gi|125999915|gb|ABN63984.1| DNA binding domain, excisionase family [Shewanella baltica OS155] gi|334865972|gb|AEH16425.1| DNA binding domain protein, excisionase family [Shewanella baltica OS117] Length=149 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/109 (40%), Positives = 66/109 (61%), Gaps = 2/109 (1%) Query 10 APEVSVCGNAGQP--MTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNIS 67 A ++SV GQ +TLP V + V+ L QG +++ P H ++TTQ+ AD LN+S Sbjct 32 AQQISVIDKQGQSHDVTLPSSVLKMMIEVLTQLGQGNSVNITPIHAEMTTQQGADFLNMS 91 Query 68 RPTLVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSR 116 RPT ++LL+ IPF + G R+V A+++Y+Q+ R + L ELSR Sbjct 92 RPTFIKLLDSREIPFTRVGNRRKVPFSAVIKYKQQLEIQRLSTLDELSR 140 >gi|300693270|ref|YP_003749243.1| excisionase (DNA binding domain) [Ralstonia solanacearum PSI07] gi|299075307|emb|CBJ34600.1| putative excisionase (DNA binding domain) [Ralstonia solanacearum PSI07] Length=155 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/101 (42%), Positives = 63/101 (63%), Gaps = 0/101 (0%) Query 18 NAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLED 77 N + LP L +++ L+ G + +VP H +LTTQEAADLLN+SRP LV+LLE+ Sbjct 47 NQAHQVELPTSALRLLVDILAELADGNAVQVVPVHAELTTQEAADLLNVSRPHLVKLLEE 106 Query 78 GRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 G +PF + G+HRRV L+++++ A+ +LSR A Sbjct 107 GELPFHRTGKHRRVRFADLMQFKEARDQASEQAIADLSRQA 147 >gi|227874709|ref|ZP_03992867.1| excisionase domain protein [Mobiluncus mulieris ATCC 35243] gi|227844706|gb|EEJ54857.1| excisionase domain protein [Mobiluncus mulieris ATCC 35243] Length=195 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/93 (50%), Positives = 60/93 (65%), Gaps = 0/93 (0%) Query 25 LPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGRIPFEK 84 LP + L ++ALS+G+ IS+ P +LTTQ+AAD L ISRPTLVRLL+ G IP+ + Sbjct 59 LPRDLYKILLKAIIALSEGRAISVTPLSTRLTTQQAADFLGISRPTLVRLLDKGEIPYSR 118 Query 85 PGRHRRVSLDALLEYQQETRSNRRAALGELSRD 117 P RHRRV L LLEY + + AL E+ D Sbjct 119 PRRHRRVLLADLLEYNERQQYRAAKALDEIMAD 151 >gi|152982466|ref|YP_001354377.1| hypothetical protein mma_2687 [Janthinobacterium sp. Marseille] gi|151282543|gb|ABR90953.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length=153 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 42/86 (49%), Positives = 59/86 (69%), Gaps = 0/86 (0%) Query 33 LYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGRIPFEKPGRHRRVS 92 L V+ + QG +S++P H +LTTQEAAD+LN+SRP LV+LLE G +PF K G HRRV Sbjct 61 LLEVLTEIGQGNAVSIIPIHAELTTQEAADVLNVSRPFLVQLLEKGEMPFHKIGTHRRVR 120 Query 93 LDALLEYQQETRSNRRAALGELSRDA 118 ++ Y++ + RR AL EL+ +A Sbjct 121 YQDVISYKKRIDTERRKALEELAAEA 146 >gi|172037602|ref|YP_001804103.1| hypothetical protein cce_2689 [Cyanothece sp. ATCC 51142] gi|171699056|gb|ACB52037.1| unknown [Cyanothece sp. ATCC 51142] Length=178 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 39/98 (40%), Positives = 61/98 (63%), Gaps = 0/98 (0%) Query 21 QPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGRI 80 Q + +P L +++ ++QG I+L+P H +LTTQEAAD+LN+SRP +++LLE G I Sbjct 73 QVVEIPASAFHLLIDILTQMAQGNAITLIPIHAELTTQEAADILNVSRPYVIKLLESGEI 132 Query 81 PFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 PF K G+HRR+ + ++ Y+ R L +L A Sbjct 133 PFTKVGKHRRIRFEDIMNYKDNIDRKRSEVLDKLVEQA 170 >gi|306818012|ref|ZP_07451746.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Mobiluncus mulieris ATCC 35239] gi|304649214|gb|EFM46505.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Mobiluncus mulieris ATCC 35239] Length=195 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/93 (49%), Positives = 61/93 (66%), Gaps = 0/93 (0%) Query 25 LPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGRIPFEK 84 LP + L ++ALS+G+ IS+ P +LTTQ+AAD L ISRPTLVRLL++G IP+ + Sbjct 59 LPRDLYKILLKAIIALSEGRAISVTPLSTRLTTQQAADFLGISRPTLVRLLDEGEIPYSR 118 Query 85 PGRHRRVSLDALLEYQQETRSNRRAALGELSRD 117 P RHR+V L LLEY + + AL E+ D Sbjct 119 PRRHRQVLLADLLEYNERQQYRAAKALDEIMAD 151 >gi|67920657|ref|ZP_00514177.1| Excisionase/Xis, DNA-binding [Crocosphaera watsonii WH 8501] gi|67858141|gb|EAM53380.1| Excisionase/Xis, DNA-binding [Crocosphaera watsonii WH 8501] Length=156 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/118 (42%), Positives = 73/118 (62%), Gaps = 2/118 (1%) Query 15 VCGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRL 74 + G G+ + LPE + L V L+QGKG++LVP+ LTTQEAA+LLNISRP L L Sbjct 36 LVGVDGEEVFLPESIYQILRQVTSLLAQGKGVTLVPQDHCLTTQEAANLLNISRPYLYTL 95 Query 75 LEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDA--LGELQAALAEKK 130 L++ IP+ G HRR+ ++ +L Y+ + S+RR L +L ++ LG + AE + Sbjct 96 LDNQEIPYILIGTHRRIKVEDILAYKTKRDSDRRQTLAQLIEESQELGFYEVERAESQ 153 >gi|251791311|ref|YP_003006032.1| DNA binding domain-containing protein, excisionase family [Dickeya zeae Ech1591] gi|247539932|gb|ACT08553.1| DNA binding domain protein, excisionase family [Dickeya zeae Ech1591] Length=153 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 42/100 (42%), Positives = 64/100 (64%), Gaps = 0/100 (0%) Query 16 CGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLL 75 N + + LP L +++ L+ G + +VP H +LTTQEAA++LN+SRP LV+LL Sbjct 45 ADNNTRQIELPTSSLTLLMSILGELAMGNAVQVVPVHAELTTQEAANILNVSRPHLVKLL 104 Query 76 EDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELS 115 EDG++PF K GRHRRV L++Y+ + + A+ EL+ Sbjct 105 EDGKLPFHKTGRHRRVLFANLMDYKHQRDNESSRAMQELA 144 >gi|291453060|ref|ZP_06592450.1| type IIA topoisomerase [Streptomyces albus J1074] gi|291356009|gb|EFE82911.1| type IIA topoisomerase [Streptomyces albus J1074] Length=154 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 42/99 (43%), Positives = 64/99 (65%), Gaps = 0/99 (0%) Query 16 CGNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLL 75 G + + LP PV + +++ AL+ G+G+ ++P +LTTQ+AAD+LN+SRP L+ LL Sbjct 46 TGADDEALVLPRPVAEMFASMLAALANGQGVQVMPVDAELTTQQAADMLNVSRPYLIGLL 105 Query 76 EDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGEL 114 E G IPF+ GRHRR+ L +Y +E S R+ A +L Sbjct 106 ESGEIPFKLVGRHRRIRFADLHQYIREDDSARKGAADDL 144 >gi|269219104|ref|ZP_06162958.1| toxin-antitoxin system, antitoxin component, MerR family [Actinomyces sp. oral taxon 848 str. F0332] gi|269211251|gb|EEZ77591.1| toxin-antitoxin system, antitoxin component, MerR family [Actinomyces sp. oral taxon 848 str. F0332] Length=177 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 43/88 (49%), Positives = 60/88 (69%), Gaps = 0/88 (0%) Query 31 DALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGRIPFEKPGRHRR 90 D L + V A+ QG +S+VP+H L+TQ+AADLL +SRPTL+R+L+DG I F + RHR+ Sbjct 59 DILRHAVEAMCQGMAVSVVPQHTMLSTQQAADLLGVSRPTLIRILDDGEIRFFRKRRHRQ 118 Query 91 VSLDALLEYQQETRSNRRAALGELSRDA 118 + L +LEYQQ R AL ++ DA Sbjct 119 LCLTDVLEYQQRQRRVADEALSDIVADA 146 >gi|253995597|ref|YP_003047661.1| excisionase family DNA-binding domain-containing protein [Methylotenera mobilis JLW8] gi|253982276|gb|ACT47134.1| DNA binding domain protein, excisionase family [Methylotenera mobilis JLW8] Length=151 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 45/97 (47%), Positives = 63/97 (65%), Gaps = 0/97 (0%) Query 19 AGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDG 78 A + + LP + L ++V +++G ISLVP H +L+TQEAA+LLN+SRP LV LLE G Sbjct 45 AAEDLVLPGQIMQLLLDIVSEMAKGNAISLVPIHHELSTQEAANLLNVSRPHLVSLLEKG 104 Query 79 RIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELS 115 +P K G HRRV +L Y++ + R AAL EL+ Sbjct 105 ELPHRKVGAHRRVLASDVLAYKESLLAKRNAALDELT 141 >gi|319944270|ref|ZP_08018546.1| arginine 2-monooxygenase [Lautropia mirabilis ATCC 51599] gi|319742565|gb|EFV94976.1| arginine 2-monooxygenase [Lautropia mirabilis ATCC 51599] Length=154 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/117 (42%), Positives = 71/117 (61%), Gaps = 7/117 (5%) Query 12 EVSVCGNAG--QPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRP 69 ++ + +AG P+ LP L +V+ + +G +S++P H +LTTQEAAD+LN+SRP Sbjct 38 QIELFDDAGVSHPVHLPVSALRLLVDVLTEIGKGNAVSVIPIHAELTTQEAADVLNVSRP 97 Query 70 TLVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDALGELQAAL 126 LV+LLE G IPF + G HRRV ++ Y+ + + R+ AL DAL E AL Sbjct 98 FLVQLLERGEIPFHRTGTHRRVRYADVMAYKSQIDAERQQAL-----DALAEQAQAL 149 >gi|254198291|ref|ZP_04904713.1| excisionase domain protein [Burkholderia pseudomallei S13] gi|169655032|gb|EDS87725.1| excisionase domain protein [Burkholderia pseudomallei S13] Length=149 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/98 (45%), Positives = 61/98 (63%), Gaps = 0/98 (0%) Query 21 QPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLEDGRI 80 +TLP L ++ + G +S++P H +LTTQ+AADLLN+SRP LV+LLE G I Sbjct 45 HTVTLPTSALRLLDEILHQIGNGNAVSIIPIHAELTTQQAADLLNVSRPYLVQLLEQGEI 104 Query 81 PFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 PF K HRRV L++Y+ + +NR AL EL+ A Sbjct 105 PFRKVNTHRRVMYLDLIQYKNKIDANRLDALAELTAQA 142 >gi|37526181|ref|NP_929525.1| hypothetical protein plu2268 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785611|emb|CAE14561.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length=153 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 41/113 (37%), Positives = 67/113 (60%), Gaps = 2/113 (1%) Query 8 LGAPEVSVCGN--AGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLN 65 L ++S+ + + +P L ++ L+ G + +VP H +LTTQEAA++LN Sbjct 35 LETQQISIISDDHKSHQIEVPTSALTMLVQILSELASGNAVQIVPVHAELTTQEAANILN 94 Query 66 ISRPTLVRLLEDGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELSRDA 118 +SRP +V+LLEDG +PF K GRHRR+ L+EY+++ + A+ L+ A Sbjct 95 VSRPHMVKLLEDGCLPFHKTGRHRRIRFADLMEYKKQRNTESMEAMKALANQA 147 >gi|83649088|ref|YP_437523.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV) subunit A [Hahella chejuensis KCTC 2396] gi|83637131|gb|ABC33098.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Hahella chejuensis KCTC 2396] Length=154 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/99 (43%), Positives = 61/99 (62%), Gaps = 0/99 (0%) Query 17 GNAGQPMTLPEPVRDALYNVVLALSQGKGISLVPRHLKLTTQEAADLLNISRPTLVRLLE 76 N + LP PV L N++ +S+G IS++P H +LTTQEAA LN+SRP V+LLE Sbjct 41 NNEKDEIVLPGPVVQLLLNILAEMSRGNAISIMPIHAELTTQEAATFLNVSRPFFVKLLE 100 Query 77 DGRIPFEKPGRHRRVSLDALLEYQQETRSNRRAALGELS 115 + ++PF K G HRRV +++Y+ R +L EL+ Sbjct 101 NHQLPFRKVGSHRRVLAKDVMDYKSSIDKQRCDSLDELA 139 Lambda K H 0.316 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 127765705240 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40