BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3759c Length=315 Score E Sequences producing significant alignments: (Bits) Value gi|15610895|ref|NP_218276.1| osmoprotectant (glycine betaine/car... 637 0.0 gi|254366304|ref|ZP_04982348.1| osmoprotectant (glycine betaine/... 634 4e-180 gi|15843379|ref|NP_338416.1| amino acid ABC transporter, amino a... 634 8e-180 gi|31794929|ref|NP_857422.1| osmoprotectant (glycine betaine/car... 633 1e-179 gi|167970920|ref|ZP_02553197.1| osmoprotectant (glycine betaine/... 633 1e-179 gi|289445358|ref|ZP_06435102.1| osmoprotectant proX [Mycobacteri... 632 3e-179 gi|289747599|ref|ZP_06506977.1| osmoprotectant binding lipoprote... 630 8e-179 gi|294995329|ref|ZP_06801020.1| amino acid ABC transporter, amin... 625 2e-177 gi|308406236|ref|ZP_07495670.2| osmoprotectant proX [Mycobacteri... 597 9e-169 gi|340628730|ref|YP_004747182.1| putative osmoprotectant [Mycoba... 573 2e-161 gi|240168518|ref|ZP_04747177.1| putative osmoprotectant (glycine... 525 3e-147 gi|118619516|ref|YP_907848.1| osmoprotectant (glycine betaine/ca... 506 2e-141 gi|183985270|ref|YP_001853561.1| osmoprotectant (glycine betaine... 506 2e-141 gi|41406369|ref|NP_959205.1| ProX [Mycobacterium avium subsp. pa... 473 2e-131 gi|336460409|gb|EGO39308.1| ABC-type transporter, quaternary ami... 473 2e-131 gi|118464087|ref|YP_879605.1| quaternary amine ABC transporter s... 471 6e-131 gi|254773327|ref|ZP_05214843.1| ABC transporter, quaternary amin... 464 5e-129 gi|254822452|ref|ZP_05227453.1| ProX [Mycobacterium intracellula... 463 2e-128 gi|296166877|ref|ZP_06849294.1| glycine betaine/L-proline ABC su... 461 6e-128 gi|342860004|ref|ZP_08716656.1| ProX [Mycobacterium colombiense ... 455 4e-126 gi|126437911|ref|YP_001073602.1| glycine betaine ABC transporter... 411 7e-113 gi|108801930|ref|YP_642127.1| glycine betaine ABC transporter su... 409 4e-112 gi|120406543|ref|YP_956372.1| glycine betaine ABC transporter su... 387 1e-105 gi|145221799|ref|YP_001132477.1| glycine betaine ABC transporter... 369 4e-100 gi|315446464|ref|YP_004079343.1| periplasmic glycine betaine/cho... 369 5e-100 gi|169627366|ref|YP_001701015.1| amino acid ABC transporter subs... 364 8e-99 gi|226365473|ref|YP_002783256.1| ABC transporter substrate-bindi... 315 4e-84 gi|229493759|ref|ZP_04387541.1| ABC amino acid transporter, subs... 314 1e-83 gi|226307615|ref|YP_002767575.1| ABC transporter substrate-bindi... 313 3e-83 gi|111022967|ref|YP_705939.1| amino acid ABC transporter substra... 312 3e-83 gi|118470013|ref|YP_890551.1| ABC transporter substrate-binding ... 306 2e-81 gi|312138893|ref|YP_004006229.1| glycine/betaine ABC transporter... 303 3e-80 gi|317508894|ref|ZP_07966531.1| hypothetical protein HMPREF9336_... 242 5e-62 gi|116671385|ref|YP_832318.1| substrate-binding region of ABC-ty... 240 2e-61 gi|331698881|ref|YP_004335120.1| glycine betaine ABC transporter... 237 2e-60 gi|111019583|ref|YP_702555.1| amino acid ABC transporter substra... 232 5e-59 gi|325964040|ref|YP_004241946.1| periplasmic glycine betaine/cho... 231 2e-58 gi|296394993|ref|YP_003659877.1| glycine betaine ABC transporter... 230 3e-58 gi|119963096|ref|YP_948524.1| glycine betaine/choline-binding pr... 230 3e-58 gi|255327621|ref|ZP_05368687.1| substrate-binding region of ABC-... 229 5e-58 gi|229489100|ref|ZP_04382966.1| ABC amino acid transporter, subs... 226 3e-57 gi|283458826|ref|YP_003363468.1| ABC transporter periplasmic gly... 226 3e-57 gi|226361731|ref|YP_002779509.1| ABC transporter substrate-bindi... 226 3e-57 gi|184199682|ref|YP_001853889.1| putative ABC transporter substr... 225 6e-57 gi|220913299|ref|YP_002488608.1| glycine betaine ABC transporter... 225 9e-57 gi|300744243|ref|ZP_07073262.1| glycine betaine/choline-binding ... 224 1e-56 gi|163839894|ref|YP_001624299.1| glycine betaine-binding protein... 218 7e-55 gi|237785024|ref|YP_002905729.1| ABC transporter substrate-bindi... 218 1e-54 gi|258651637|ref|YP_003200793.1| glycine betaine ABC transporter... 217 2e-54 gi|311112854|ref|YP_003984076.1| glycine betaine/choline ABC tra... 214 1e-53 >gi|15610895|ref|NP_218276.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein PROX [Mycobacterium tuberculosis H37Rv] gi|148663625|ref|YP_001285148.1| amino acid ABC transporter substrate-binding protein [Mycobacterium tuberculosis H37Ra] gi|148824964|ref|YP_001289718.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport system substrate binding lipoprotein proX [Mycobacterium tuberculosis F11] 33 more sequence titles Length=315 Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/315 (100%), Positives = 315/315 (100%), Gaps = 0/315 (0%) Query 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY 60 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY Sbjct 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY 60 Query 61 AQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 120 AQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL Sbjct 61 AQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 120 Query 121 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR 180 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR Sbjct 121 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR 180 Query 181 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL 240 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL Sbjct 181 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL 240 Query 241 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 300 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA Sbjct 241 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 300 Query 301 RKWVRDNGFDHPVRQ 315 RKWVRDNGFDHPVRQ Sbjct 301 RKWVRDNGFDHPVRQ 315 >gi|254366304|ref|ZP_04982348.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein proX [Mycobacterium tuberculosis str. Haarlem] gi|289441195|ref|ZP_06430939.1| osmoprotectant proX [Mycobacterium tuberculosis T46] gi|289572005|ref|ZP_06452232.1| osmoprotectant proX [Mycobacterium tuberculosis T17] 12 more sequence titles Length=315 Score = 634 bits (1636), Expect = 4e-180, Method: Compositional matrix adjust. Identities = 314/315 (99%), Positives = 314/315 (99%), Gaps = 0/315 (0%) Query 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY 60 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY Sbjct 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY 60 Query 61 AQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 120 AQVLQANGFDVGRRLGIGSRETYI ALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL Sbjct 61 AQVLQANGFDVGRRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 120 Query 121 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR 180 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR Sbjct 121 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR 180 Query 181 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL 240 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL Sbjct 181 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL 240 Query 241 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 300 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA Sbjct 241 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 300 Query 301 RKWVRDNGFDHPVRQ 315 RKWVRDNGFDHPVRQ Sbjct 301 RKWVRDNGFDHPVRQ 315 >gi|15843379|ref|NP_338416.1| amino acid ABC transporter, amino acid-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|254233251|ref|ZP_04926577.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein proX [Mycobacterium tuberculosis C] gi|13883744|gb|AAK48230.1| amino acid ABC transporter, amino acid-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|124603044|gb|EAY61319.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein proX [Mycobacterium tuberculosis C] Length=343 Score = 634 bits (1634), Expect = 8e-180, Method: Compositional matrix adjust. Identities = 314/315 (99%), Positives = 314/315 (99%), Gaps = 0/315 (0%) Query 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY 60 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY Sbjct 29 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY 88 Query 61 AQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 120 AQVLQANGFDVGRRLGIGSRETYI ALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL Sbjct 89 AQVLQANGFDVGRRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 148 Query 121 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR 180 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR Sbjct 149 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR 208 Query 181 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL 240 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL Sbjct 209 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL 268 Query 241 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 300 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA Sbjct 269 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 328 Query 301 RKWVRDNGFDHPVRQ 315 RKWVRDNGFDHPVRQ Sbjct 329 RKWVRDNGFDHPVRQ 343 >gi|31794929|ref|NP_857422.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein PROX [Mycobacterium bovis AF2122/97] gi|121639673|ref|YP_979897.1| putative osmoprotectant (glycine betaine/carnitine/choline/l-proline) binding lipoprotein proX [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224992169|ref|YP_002646858.1| putative osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein [Mycobacterium bovis BCG str. Tokyo 172] gi|31620527|emb|CAD95971.1| POSSIBLE OSMOPROTECTANT (GLYCINE BETAINE/CARNITINE/CHOLINE/L-PROLINE) BINDING LIPOPROTEIN PROX [Mycobacterium bovis AF2122/97] gi|121495321|emb|CAL73808.1| Possible osmoprotectant (glycine betaine/carnitine/choline/l-proline) binding lipoprotein proX [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224775284|dbj|BAH28090.1| putative osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein [Mycobacterium bovis BCG str. Tokyo 172] gi|341603694|emb|CCC66375.1| possible osmoprotectant (glycine betaine/carnitine/choline/l-proline) binding lipoprotein proX [Mycobacterium bovis BCG str. Moreau RDJ] Length=315 Score = 633 bits (1633), Expect = 1e-179, Method: Compositional matrix adjust. Identities = 313/315 (99%), Positives = 313/315 (99%), Gaps = 0/315 (0%) Query 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY 60 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY Sbjct 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY 60 Query 61 AQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 120 AQVLQANGFDVGRRLGIGSRETYI ALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL Sbjct 61 AQVLQANGFDVGRRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 120 Query 121 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR 180 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPS FQTR Sbjct 121 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSVFQTR 180 Query 181 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL 240 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL Sbjct 181 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL 240 Query 241 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 300 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA Sbjct 241 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 300 Query 301 RKWVRDNGFDHPVRQ 315 RKWVRDNGFDHPVRQ Sbjct 301 RKWVRDNGFDHPVRQ 315 >gi|167970920|ref|ZP_02553197.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport system substrate binding lipoprotein proX [Mycobacterium tuberculosis H37Ra] gi|254552873|ref|ZP_05143320.1| osmoprotectant proX [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|297636440|ref|ZP_06954220.1| osmoprotectant proX [Mycobacterium tuberculosis KZN 4207] gi|297733434|ref|ZP_06962552.1| osmoprotectant proX [Mycobacterium tuberculosis KZN R506] gi|313660765|ref|ZP_07817645.1| osmoprotectant proX [Mycobacterium tuberculosis KZN V2475] Length=313 Score = 633 bits (1632), Expect = 1e-179, Method: Compositional matrix adjust. Identities = 313/313 (100%), Positives = 313/313 (100%), Gaps = 0/313 (0%) Query 3 MLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQ 62 MLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQ Sbjct 1 MLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQ 60 Query 63 VLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELEL 122 VLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELEL Sbjct 61 VLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELEL 120 Query 123 YKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPS 182 YKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPS Sbjct 121 YKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPS 180 Query 183 GLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLED 242 GLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLED Sbjct 181 GLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLED 240 Query 243 PEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARK 302 PEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARK Sbjct 241 PEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARK 300 Query 303 WVRDNGFDHPVRQ 315 WVRDNGFDHPVRQ Sbjct 301 WVRDNGFDHPVRQ 313 >gi|289445358|ref|ZP_06435102.1| osmoprotectant proX [Mycobacterium tuberculosis CPHL_A] gi|289418316|gb|EFD15517.1| osmoprotectant proX [Mycobacterium tuberculosis CPHL_A] Length=315 Score = 632 bits (1629), Expect = 3e-179, Method: Compositional matrix adjust. Identities = 313/315 (99%), Positives = 313/315 (99%), Gaps = 0/315 (0%) Query 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY 60 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVV SGDFPESQVIAEIY Sbjct 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVESGDFPESQVIAEIY 60 Query 61 AQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 120 AQVLQANGFDVGRRLGIGSRETYI ALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL Sbjct 61 AQVLQANGFDVGRRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 120 Query 121 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR 180 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR Sbjct 121 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR 180 Query 181 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL 240 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL Sbjct 181 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL 240 Query 241 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 300 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA Sbjct 241 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 300 Query 301 RKWVRDNGFDHPVRQ 315 RKWVRDNGFDHPVRQ Sbjct 301 RKWVRDNGFDHPVRQ 315 >gi|289747599|ref|ZP_06506977.1| osmoprotectant binding lipoprotein PROX [Mycobacterium tuberculosis 02_1987] gi|289759921|ref|ZP_06519299.1| osmoprotectant binding lipoprotein PROX [Mycobacterium tuberculosis T85] gi|298527232|ref|ZP_07014641.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein proX [Mycobacterium tuberculosis 94_M4241A] 6 more sequence titles Length=315 Score = 630 bits (1625), Expect = 8e-179, Method: Compositional matrix adjust. Identities = 313/315 (99%), Positives = 313/315 (99%), Gaps = 0/315 (0%) Query 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY 60 MRMLRRLRRATVAAAV LATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY Sbjct 1 MRMLRRLRRATVAAAVRLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY 60 Query 61 AQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 120 AQVLQANGFDVGRRLGIGSRETYI ALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL Sbjct 61 AQVLQANGFDVGRRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 120 Query 121 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR 180 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR Sbjct 121 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR 180 Query 181 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL 240 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL Sbjct 181 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL 240 Query 241 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 300 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA Sbjct 241 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 300 Query 301 RKWVRDNGFDHPVRQ 315 RKWVRDNGFDHPVRQ Sbjct 301 RKWVRDNGFDHPVRQ 315 >gi|294995329|ref|ZP_06801020.1| amino acid ABC transporter, amino acid-binding protein, putative [Mycobacterium tuberculosis 210] Length=313 Score = 625 bits (1613), Expect = 2e-177, Method: Compositional matrix adjust. Identities = 311/313 (99%), Positives = 311/313 (99%), Gaps = 0/313 (0%) Query 3 MLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQ 62 MLRRLRRATVAAAV LATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQ Sbjct 1 MLRRLRRATVAAAVRLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQ 60 Query 63 VLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELEL 122 VLQANGFDVGRRLGIGSRETYI ALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELEL Sbjct 61 VLQANGFDVGRRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELEL 120 Query 123 YKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPS 182 YKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPS Sbjct 121 YKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPS 180 Query 183 GLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLED 242 GLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLED Sbjct 181 GLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLED 240 Query 243 PEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARK 302 PEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARK Sbjct 241 PEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARK 300 Query 303 WVRDNGFDHPVRQ 315 WVRDNGFDHPVRQ Sbjct 301 WVRDNGFDHPVRQ 313 >gi|308406236|ref|ZP_07495670.2| osmoprotectant proX [Mycobacterium tuberculosis SUMu012] gi|308364034|gb|EFP52885.1| osmoprotectant proX [Mycobacterium tuberculosis SUMu012] Length=295 Score = 597 bits (1539), Expect = 9e-169, Method: Compositional matrix adjust. Identities = 294/295 (99%), Positives = 295/295 (100%), Gaps = 0/295 (0%) Query 21 VCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQANGFDVGRRLGIGSR 80 +CLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQANGFDVGRRLGIGSR Sbjct 1 MCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQANGFDVGRRLGIGSR 60 Query 81 ETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDLSILTPSPASD 140 ETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDLSILTPSPASD Sbjct 61 ETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDLSILTPSPASD 120 Query 141 TDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIAPGNF 200 TDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIAPGNF Sbjct 121 TDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIAPGNF 180 Query 201 VTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAGNIVPLVNSRK 260 VTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAGNIVPLVNSRK Sbjct 181 VTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAGNIVPLVNSRK 240 Query 261 KSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDNGFDHPVRQ 315 KSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDNGFDHPVRQ Sbjct 241 KSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDNGFDHPVRQ 295 >gi|340628730|ref|YP_004747182.1| putative osmoprotectant [Mycobacterium canettii CIPT 140010059] gi|340006920|emb|CCC46110.1| putative osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein PROX [Mycobacterium canettii CIPT 140010059] Length=315 Score = 573 bits (1476), Expect = 2e-161, Method: Compositional matrix adjust. Identities = 298/306 (98%), Positives = 301/306 (99%), Gaps = 0/306 (0%) Query 10 ATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQANGF 69 ATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQ LQANGF Sbjct 10 ATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQALQANGF 69 Query 70 DVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGD 129 DVGRRLGIGSRETYI ALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGD Sbjct 70 DVGRRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGD 129 Query 130 LSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRH 189 LSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQ RPSGLPGLRH Sbjct 130 LSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQARPSGLPGLRH 189 Query 190 KYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLA 249 KY+LDIAPGNFVTINDGGGAVTVRALVEGTATAAN+FSTSAAIPQNHLVVLEDPEHNFLA Sbjct 190 KYALDIAPGNFVTINDGGGAVTVRALVEGTATAANVFSTSAAIPQNHLVVLEDPEHNFLA 249 Query 250 GNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDNGF 309 GNIVPLVNSRKKSD LKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPD+AARKWVRDNGF Sbjct 250 GNIVPLVNSRKKSDRLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDEAARKWVRDNGF 309 Query 310 DHPVRQ 315 DHPV Q Sbjct 310 DHPVWQ 315 >gi|240168518|ref|ZP_04747177.1| putative osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein [Mycobacterium kansasii ATCC 12478] Length=315 Score = 525 bits (1353), Expect = 3e-147, Method: Compositional matrix adjust. Identities = 266/314 (85%), Positives = 286/314 (92%), Gaps = 0/314 (0%) Query 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY 60 M MLRR RRAT+AAAV L T C VA+C NADP GS+ G++KSIVVGSGDFPESQ++AEIY Sbjct 1 MGMLRRTRRATLAAAVCLVTACPVAACGNADPFGSSNGTIKSIVVGSGDFPESQIVAEIY 60 Query 61 AQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 120 AQ LQANGFDVGRRLGIGSRETYI ALKDHSIDLVPEYIGNLLLYFQPD+T TMLDAVEL Sbjct 61 AQALQANGFDVGRRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDSTATMLDAVEL 120 Query 121 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR 180 ELYKRLPGDLSILTPSPASDTDTVTVT TA +WNL TIADLA HSA+VKFAAPS FQTR Sbjct 121 ELYKRLPGDLSILTPSPASDTDTVTVTKVTATKWNLTTIADLAAHSAEVKFAAPSVFQTR 180 Query 181 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL 240 P+GLPGLR KY LDIAP NF+TINDGGGAVTVRALV+GT TAAN+FSTS AI QN+LVVL Sbjct 181 PAGLPGLRQKYGLDIAPANFMTINDGGGAVTVRALVDGTVTAANIFSTSPAIRQNNLVVL 240 Query 241 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 300 DPEHNFLAGNIVPLVNS+KKSD LKDVLDAVSAKLTT G+AELNAAVSGN GVDPDQAA Sbjct 241 ADPEHNFLAGNIVPLVNSQKKSDRLKDVLDAVSAKLTTEGMAELNAAVSGNDGVDPDQAA 300 Query 301 RKWVRDNGFDHPVR 314 RKW+RDNGFDHP++ Sbjct 301 RKWLRDNGFDHPIQ 314 >gi|118619516|ref|YP_907848.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein ProX [Mycobacterium ulcerans Agy99] gi|118571626|gb|ABL06377.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein ProX [Mycobacterium ulcerans Agy99] Length=315 Score = 506 bits (1302), Expect = 2e-141, Method: Compositional matrix adjust. Identities = 242/314 (78%), Positives = 280/314 (90%), Gaps = 0/314 (0%) Query 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY 60 M LRR+ RAT+AAA+ + VC VA+C ++DP G+ + + SIVVGSGDFPESQ++AE+Y Sbjct 1 MGTLRRMCRATLAAALCVVMVCSVAACGSSDPFGTTSCDINSIVVGSGDFPESQIVAELY 60 Query 61 AQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 120 AQ L+ANGF+VG RLGIGSRETYI ALKDHSIDLVPEYIGNLLLYF P ATVT+LDAVEL Sbjct 61 AQALRANGFEVGMRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFDPHATVTLLDAVEL 120 Query 121 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR 180 ELY+RLPGDLS+LTPSPASDTDTVTVT+ATA +WNLKTIADLAPHSA+++FAAPSAFQ R Sbjct 121 ELYRRLPGDLSVLTPSPASDTDTVTVTSATAGKWNLKTIADLAPHSANLRFAAPSAFQNR 180 Query 181 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL 240 PSGL GLR KY LDI+P NFVTINDGGGAVTVRAL++GT AA++FSTS AI QNHLVVL Sbjct 181 PSGLRGLREKYGLDISPQNFVTINDGGGAVTVRALLDGTVDAADIFSTSPAIRQNHLVVL 240 Query 241 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 300 DPEHNF AGNIVPL+NS+KKSD +KDVLDAVSAKLTT G+AELNA+VSGN G+DP++AA Sbjct 241 ADPEHNFRAGNIVPLLNSQKKSDRIKDVLDAVSAKLTTEGVAELNASVSGNGGIDPNEAA 300 Query 301 RKWVRDNGFDHPVR 314 RKW+ DNGFDHP+R Sbjct 301 RKWLHDNGFDHPIR 314 >gi|183985270|ref|YP_001853561.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein ProX [Mycobacterium marinum M] gi|183178596|gb|ACC43706.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) binding lipoprotein ProX [Mycobacterium marinum M] Length=315 Score = 506 bits (1302), Expect = 2e-141, Method: Compositional matrix adjust. Identities = 243/314 (78%), Positives = 278/314 (89%), Gaps = 0/314 (0%) Query 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY 60 M LRR+ RAT+AAA+ + TVC VA+C ++DP G+ V SIVVGSGDFPESQ++AE+Y Sbjct 1 MGTLRRMCRATLAAALCVVTVCSVAACGSSDPFGTTGCDVNSIVVGSGDFPESQIVAELY 60 Query 61 AQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 120 AQ L+ NGF+VG RLGIGSRETYI ALKDHSIDLVPEYIGNLLLYF P ATVT+LDAVEL Sbjct 61 AQALRVNGFEVGMRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFDPHATVTLLDAVEL 120 Query 121 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR 180 ELY+RLPGDLS+LTPSPASDTDTVTVT ATA +WNLKTIADLAPHSA+++FAAPSAFQ R Sbjct 121 ELYRRLPGDLSVLTPSPASDTDTVTVTGATAGKWNLKTIADLAPHSANLRFAAPSAFQNR 180 Query 181 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL 240 PSGL GLR KY LDI+P NFV+INDGGGAVTVRAL++GT AA++FSTS AI QNHLVVL Sbjct 181 PSGLRGLREKYGLDISPQNFVSINDGGGAVTVRALLDGTVDAADIFSTSPAIRQNHLVVL 240 Query 241 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 300 DPEHNF AGNIVPL+NS+KKSD +KDVLDAVSAKLTT G+AELNA+VSGN G+DPD+AA Sbjct 241 ADPEHNFRAGNIVPLLNSQKKSDRIKDVLDAVSAKLTTEGVAELNASVSGNGGIDPDEAA 300 Query 301 RKWVRDNGFDHPVR 314 RKW+ DNGFDHP+R Sbjct 301 RKWLHDNGFDHPIR 314 >gi|41406369|ref|NP_959205.1| ProX [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394717|gb|AAS02588.1| ProX [Mycobacterium avium subsp. paratuberculosis K-10] Length=338 Score = 473 bits (1217), Expect = 2e-131, Method: Compositional matrix adjust. Identities = 224/296 (76%), Positives = 261/296 (89%), Gaps = 0/296 (0%) Query 18 LATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQANGFDVGRRLGI 77 L T+ +VA+C+N+DPLG+ S SIVVGSGDFPESQ+IAEIYAQ LQANGFDVG+R+GI Sbjct 41 LTTMFVVAACSNSDPLGAQVRSPDSIVVGSGDFPESQIIAEIYAQALQANGFDVGKRMGI 100 Query 78 GSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDLSILTPSP 137 GSRETYI A+KDHSIDLVPEYIGNLLLYF+P ++ T LDAVE EL++RLP DLSILTP+P Sbjct 101 GSRETYIPAIKDHSIDLVPEYIGNLLLYFEPASSATTLDAVEQELHRRLPADLSILTPAP 160 Query 138 ASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIAP 197 A+DTDTV+VT+ A WNL+TI DLAPHSAD++F APSAF TRP+GLPGLR KY LDI P Sbjct 161 ATDTDTVSVTSQAANSWNLRTIGDLAPHSADIRFGAPSAFATRPAGLPGLRQKYGLDIKP 220 Query 198 GNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAGNIVPLVN 257 GNFV I+DGGGAVTVRAL+EG AAN+F+TS AIPQ+HLV L+DPEHNF+AGN+VPLVN Sbjct 221 GNFVAIDDGGGAVTVRALLEGRVNAANIFTTSPAIPQHHLVALDDPEHNFMAGNVVPLVN 280 Query 258 SRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDNGFDHPV 313 S+K+S+ LK VLDAVSAKLTT G+A LNAAVSGNSGVDPDQAAR WVRDNGF+HP+ Sbjct 281 SQKRSERLKLVLDAVSAKLTTPGVAGLNAAVSGNSGVDPDQAARNWVRDNGFNHPI 336 >gi|336460409|gb|EGO39308.1| ABC-type transporter, quaternary amine uptake transporter [Mycobacterium avium subsp. paratuberculosis S397] Length=315 Score = 473 bits (1216), Expect = 2e-131, Method: Compositional matrix adjust. Identities = 224/296 (76%), Positives = 261/296 (89%), Gaps = 0/296 (0%) Query 18 LATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQANGFDVGRRLGI 77 L T+ +VA+C+N+DPLG+ S SIVVGSGDFPESQ+IAEIYAQ LQANGFDVG+R+GI Sbjct 18 LTTMFVVAACSNSDPLGAQVRSPDSIVVGSGDFPESQIIAEIYAQALQANGFDVGKRMGI 77 Query 78 GSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDLSILTPSP 137 GSRETYI A+KDHSIDLVPEYIGNLLLYF+P ++ T LDAVE EL++RLP DLSILTP+P Sbjct 78 GSRETYIPAIKDHSIDLVPEYIGNLLLYFEPASSATTLDAVEQELHRRLPADLSILTPAP 137 Query 138 ASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIAP 197 A+DTDTV+VT+ A WNL+TI DLAPHSAD++F APSAF TRP+GLPGLR KY LDI P Sbjct 138 ATDTDTVSVTSQAANSWNLRTIGDLAPHSADIRFGAPSAFATRPAGLPGLRQKYGLDIKP 197 Query 198 GNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAGNIVPLVN 257 GNFV I+DGGGAVTVRAL+EG AAN+F+TS AIPQ+HLV L+DPEHNF+AGN+VPLVN Sbjct 198 GNFVAIDDGGGAVTVRALLEGRVNAANIFTTSPAIPQHHLVALDDPEHNFMAGNVVPLVN 257 Query 258 SRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDNGFDHPV 313 S+K+S+ LK VLDAVSAKLTT G+A LNAAVSGNSGVDPDQAAR WVRDNGF+HP+ Sbjct 258 SQKRSERLKLVLDAVSAKLTTPGVAGLNAAVSGNSGVDPDQAARNWVRDNGFNHPI 313 >gi|118464087|ref|YP_879605.1| quaternary amine ABC transporter substrate-binding protein [Mycobacterium avium 104] gi|118165374|gb|ABK66271.1| ABC transporter, quaternary amine uptake transporter (QAT) family protein, substrate-binding protein [Mycobacterium avium 104] Length=302 Score = 471 bits (1212), Expect = 6e-131, Method: Compositional matrix adjust. Identities = 225/299 (76%), Positives = 262/299 (88%), Gaps = 0/299 (0%) Query 15 AVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQANGFDVGRR 74 AV L T+ +VA+C+N+DPLG+ S SIVVGSGDFPESQ+IAEIYAQ LQANGFDVG+R Sbjct 2 AVLLTTMFVVAACSNSDPLGAQVRSPDSIVVGSGDFPESQIIAEIYAQALQANGFDVGKR 61 Query 75 LGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDLSILT 134 +GIGSRETYI A+KDHSIDLVPEYIGNLLLYF+P ++ T LDAVE EL++RLP DLSILT Sbjct 62 MGIGSRETYIPAIKDHSIDLVPEYIGNLLLYFEPASSATTLDAVEQELHRRLPADLSILT 121 Query 135 PSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLD 194 P+PA+DTDTV+VT+ A WNL+TI DLAPHSADV+F APSAF TRP+GLPGLR KY LD Sbjct 122 PAPATDTDTVSVTSQAANSWNLRTIGDLAPHSADVRFGAPSAFATRPAGLPGLRQKYGLD 181 Query 195 IAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAGNIVP 254 I PGNFV I+DGGGAVTVRAL+EG AAN+F+TS AIPQ+HLV L+DPEHNF+AGN+VP Sbjct 182 IKPGNFVAIDDGGGAVTVRALLEGRVNAANIFTTSPAIPQHHLVALDDPEHNFIAGNVVP 241 Query 255 LVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDNGFDHPV 313 LVNS+K+S+ LK VLDAVSAKLTT G+A LNAAVSGNSGVDPDQAAR W+RDNG +HP+ Sbjct 242 LVNSQKRSERLKLVLDAVSAKLTTPGVAGLNAAVSGNSGVDPDQAARNWLRDNGLNHPI 300 >gi|254773327|ref|ZP_05214843.1| ABC transporter, quaternary amine uptake transporter (QAT) family protein, substrate-binding protein [Mycobacterium avium subsp. avium ATCC 25291] Length=315 Score = 464 bits (1195), Expect = 5e-129, Method: Compositional matrix adjust. Identities = 222/296 (75%), Positives = 258/296 (88%), Gaps = 0/296 (0%) Query 18 LATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQANGFDVGRRLGI 77 L T+ +VA+C+N+DPLG+ S SIVVGSGDFPESQ+IAEIYAQ LQANGFDVG+R+GI Sbjct 18 LTTMFVVAACSNSDPLGAQVRSPDSIVVGSGDFPESQIIAEIYAQALQANGFDVGKRMGI 77 Query 78 GSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDLSILTPSP 137 GSRETYI A+KDHSIDLVPEYIGNLLLYF+P ++ T LDAVE EL++RLP DLSILTP+P Sbjct 78 GSRETYIPAIKDHSIDLVPEYIGNLLLYFEPASSATTLDAVEQELHRRLPADLSILTPAP 137 Query 138 ASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIAP 197 A+DTDTV+VT+ A WNL+TI DLAPHSADV+F APSAF TRP+GLPGLR KY LDI P Sbjct 138 ATDTDTVSVTSQAANSWNLRTIGDLAPHSADVRFGAPSAFATRPAGLPGLRQKYGLDIKP 197 Query 198 GNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAGNIVPLVN 257 GNFV I+DGGGAVTVRAL+EG AAN+F+TS AIPQ+HLV L+DPEHNF+AGN+VPLVN Sbjct 198 GNFVAIDDGGGAVTVRALLEGRVNAANIFTTSPAIPQHHLVALDDPEHNFIAGNVVPLVN 257 Query 258 SRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDNGFDHPV 313 S+K S+ LK VLDAVSAKLTT G+A LNAAVSGNSGVDPDQAAR W+RDNG +H + Sbjct 258 SQKHSERLKLVLDAVSAKLTTPGVAGLNAAVSGNSGVDPDQAARNWLRDNGLNHSI 313 >gi|254822452|ref|ZP_05227453.1| ProX [Mycobacterium intracellulare ATCC 13950] Length=315 Score = 463 bits (1191), Expect = 2e-128, Method: Compositional matrix adjust. Identities = 234/313 (75%), Positives = 267/313 (86%), Gaps = 0/313 (0%) Query 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIY 60 M + R V AA L +C+VA+C+N+DPLG+ S SIVVGSGDFPESQ+IAEIY Sbjct 1 MTLAPRPHGVIVRAAALLTAMCVVAACSNSDPLGAQVKSPWSIVVGSGDFPESQIIAEIY 60 Query 61 AQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 120 AQ LQANGFD+GRR+GIGSRETYI ALKDHSIDLVPEYIGNLLLYF PD+ T LD VEL Sbjct 61 AQALQANGFDIGRRMGIGSRETYIPALKDHSIDLVPEYIGNLLLYFAPDSEATTLDVVEL 120 Query 121 ELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTR 180 EL +RLPGDLSILTP+PA+DTDTVTVT+ TA WNLKTIADLA HSA+V+F APSAF TR Sbjct 121 ELRRRLPGDLSILTPAPATDTDTVTVTSQTANAWNLKTIADLAAHSAEVRFGAPSAFATR 180 Query 181 PSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVL 240 P+GLPGLR KY LDI PGNFV I+DGGGAVTVRAL++G AAN+F+TS AIPQ HLVVL Sbjct 181 PAGLPGLRQKYGLDIRPGNFVAIDDGGGAVTVRALLDGRVNAANVFTTSPAIPQGHLVVL 240 Query 241 EDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 300 +DPEHNF+AGNIVPLVNS+K S LKDVLDAVSAKLTT+G+A LNAAVSGNSG+DPD+AA Sbjct 241 DDPEHNFVAGNIVPLVNSQKNSGLLKDVLDAVSAKLTTSGVAGLNAAVSGNSGIDPDEAA 300 Query 301 RKWVRDNGFDHPV 313 R W+RDNGF+HP+ Sbjct 301 RNWIRDNGFNHPI 313 >gi|296166877|ref|ZP_06849294.1| glycine betaine/L-proline ABC superfamily ATP binding cassette transporter, substrate-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897754|gb|EFG77343.1| glycine betaine/L-proline ABC superfamily ATP binding cassette transporter, substrate-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=315 Score = 461 bits (1187), Expect = 6e-128, Method: Compositional matrix adjust. Identities = 229/299 (77%), Positives = 262/299 (88%), Gaps = 0/299 (0%) Query 17 WLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQANGFDVGRRLG 76 WL +C +A+C++ADPLG+ + ++IVVGSGDFPESQ+IAEIYAQ LQ NGF+VGRR+G Sbjct 17 WLTAICALAACSSADPLGAEVRNPRNIVVGSGDFPESQIIAEIYAQALQTNGFEVGRRMG 76 Query 77 IGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDLSILTPS 136 IGSRETYI ALKDHSIDLVPEYIGNLLLYF P++T T+LDAVELEL +RLPGDL+ILTPS Sbjct 77 IGSRETYIPALKDHSIDLVPEYIGNLLLYFAPESTATLLDAVELELDRRLPGDLAILTPS 136 Query 137 PASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIA 196 PASDTDTVTVT TA W L+TIADLA HSADV+F APSAF RPSGLPGLR KY LDI Sbjct 137 PASDTDTVTVTGGTANSWKLRTIADLAAHSADVRFGAPSAFANRPSGLPGLRQKYGLDIR 196 Query 197 PGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAGNIVPLV 256 PGNFV I+DGGGAVTVRAL+EG AAN+F+TS AIPQNHLVVL+DPE NFLAGNIVPLV Sbjct 197 PGNFVAIDDGGGAVTVRALLEGRVNAANVFTTSPAIPQNHLVVLDDPEQNFLAGNIVPLV 256 Query 257 NSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDNGFDHPVRQ 315 NS+KKSD LK+VLDAVS +LTT+G+A LNAAV+GNSG+DPDQAAR W+RDNG +HPV Q Sbjct 257 NSQKKSDRLKEVLDAVSGRLTTSGVAGLNAAVAGNSGIDPDQAARNWLRDNGLNHPVGQ 315 >gi|342860004|ref|ZP_08716656.1| ProX [Mycobacterium colombiense CECT 3035] gi|342132382|gb|EGT85611.1| ProX [Mycobacterium colombiense CECT 3035] Length=315 Score = 455 bits (1170), Expect = 4e-126, Method: Compositional matrix adjust. Identities = 220/287 (77%), Positives = 249/287 (87%), Gaps = 0/287 (0%) Query 27 CANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQANGFDVGRRLGIGSRETYILA 86 C+N+DPLG+ S SIV+GSGDFPESQ+IAEIYAQ LQANGF+VG+R+GIGSRETYI A Sbjct 27 CSNSDPLGAQVRSPNSIVIGSGDFPESQIIAEIYAQALQANGFEVGKRMGIGSRETYIPA 86 Query 87 LKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDLSILTPSPASDTDTVTV 146 LKDHSIDLVPEYIGNLLLY P + T LDAVE EL +RLPGDLSILTP+PA+DTDTV+V Sbjct 87 LKDHSIDLVPEYIGNLLLYISPQSDATTLDAVERELDQRLPGDLSILTPAPATDTDTVSV 146 Query 147 TAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIAPGNFVTINDG 206 T TA WNLKTIADLA HSA V+F APSAF TRP+GLPGLR KY L+I PGNFV I+DG Sbjct 147 TGQTANSWNLKTIADLAVHSAAVRFGAPSAFATRPAGLPGLRQKYGLEIKPGNFVAIDDG 206 Query 207 GGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAGNIVPLVNSRKKSDHLK 266 GGAVTVRAL+EG AAN+F+TS AIPQNHLV L+DPEHNF+AGNIVPL+NS+K+S LK Sbjct 207 GGAVTVRALLEGRVNAANVFTTSPAIPQNHLVPLDDPEHNFVAGNIVPLLNSQKRSPRLK 266 Query 267 DVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDNGFDHPV 313 VLDAVSAKLTT G+A LNAAVSGNSG+DPD+AAR WVRDNGFDHP+ Sbjct 267 AVLDAVSAKLTTPGVAGLNAAVSGNSGIDPDEAARNWVRDNGFDHPI 313 >gi|126437911|ref|YP_001073602.1| glycine betaine ABC transporter substrate-binding protein [Mycobacterium sp. JLS] gi|126237711|gb|ABO01112.1| Substrate-binding region of ABC-type glycine betaine transport system [Mycobacterium sp. JLS] Length=314 Score = 411 bits (1056), Expect = 7e-113, Method: Compositional matrix adjust. Identities = 203/310 (66%), Positives = 240/310 (78%), Gaps = 2/310 (0%) Query 8 RRATVAAAVWLATVCLVASCANADPLGSA--TGSVKSIVVGSGDFPESQVIAEIYAQVLQ 65 RR T AA+ ++ + +C +++PLG +G +K++ VGS DF ES++IAEIYAQ L+ Sbjct 5 RRRTRWAALLVSVTLALTACGSSNPLGGGEISGDLKTVTVGSADFTESKIIAEIYAQALE 64 Query 66 ANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKR 125 ANGFD+ R+ GIGSRETYILA++DHSIDL+PEY GNLL YF + VT DAV L L + Sbjct 65 ANGFDITRQFGIGSRETYILAVQDHSIDLIPEYTGNLLQYFDEETDVTTPDAVILGLLRA 124 Query 126 LPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLP 185 LPGDLSIL PSPA D DTV V+A TA RWNLKTI DLA HS +VKF PS F R GLP Sbjct 125 LPGDLSILYPSPAEDKDTVAVSAETAQRWNLKTIGDLAAHSPEVKFGGPSEFLNRTEGLP 184 Query 186 GLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEH 245 GL+ KY LDIAP NFV I+DGGG TVRAL +GT TAAN+FSTS AI QN+LVVLEDP++ Sbjct 185 GLKEKYGLDIAPSNFVAISDGGGPATVRALTDGTVTAANIFSTSPAIKQNNLVVLEDPKN 244 Query 246 NFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVR 305 NFLA N+VPLV S+KKSD LK VLDAVSAKLTT GL ELNAAV GN GVDPD+AA+KWV Sbjct 245 NFLAANVVPLVASQKKSDELKSVLDAVSAKLTTEGLIELNAAVEGNRGVDPDEAAQKWVA 304 Query 306 DNGFDHPVRQ 315 DNGFD P+ + Sbjct 305 DNGFDKPLTK 314 >gi|108801930|ref|YP_642127.1| glycine betaine ABC transporter substrate-binding protein [Mycobacterium sp. MCS] gi|119871082|ref|YP_941034.1| glycine betaine ABC transporter substrate-binding protein [Mycobacterium sp. KMS] gi|108772349|gb|ABG11071.1| Substrate-binding region of ABC-type glycine betaine transport system [Mycobacterium sp. MCS] gi|119697171|gb|ABL94244.1| Substrate-binding region of ABC-type glycine betaine transport system [Mycobacterium sp. KMS] Length=314 Score = 409 bits (1050), Expect = 4e-112, Method: Compositional matrix adjust. Identities = 202/310 (66%), Positives = 239/310 (78%), Gaps = 2/310 (0%) Query 8 RRATVAAAVWLATVCLVASCANADPLGSA--TGSVKSIVVGSGDFPESQVIAEIYAQVLQ 65 RR T AA+ ++ + +C +++PLG +G +K++ VGS DF ES++IAEIYAQ L+ Sbjct 5 RRRTRWAALLVSVTLALTACGSSNPLGGGEISGDLKTVTVGSADFTESKIIAEIYAQALE 64 Query 66 ANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKR 125 ANGFD+ R+ GIGSRETYI A++DHSIDL+PEY GNLL YF + VT DAV L L + Sbjct 65 ANGFDISRQFGIGSRETYIPAVQDHSIDLIPEYTGNLLQYFDEETDVTTPDAVILGLLRA 124 Query 126 LPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLP 185 LPGDLSIL PSPA D DTV V+A TA RWNLKTI DLA HS +VKF PS F R GLP Sbjct 125 LPGDLSILYPSPAEDKDTVAVSAETAQRWNLKTIGDLAAHSPEVKFGGPSEFLNRTEGLP 184 Query 186 GLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEH 245 GL+ KY LDIAP NFV I+DGGG TVRAL +GT TAAN+FSTS AI QN+LVVLEDP++ Sbjct 185 GLKEKYGLDIAPSNFVAISDGGGPATVRALTDGTVTAANIFSTSPAIEQNNLVVLEDPKN 244 Query 246 NFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVR 305 NFLA N+VPLV S+KKSD LK VLDAVSAKLTT GL ELNAAV GN GVDPD+AA+KWV Sbjct 245 NFLAANVVPLVASQKKSDELKSVLDAVSAKLTTEGLIELNAAVEGNRGVDPDEAAQKWVA 304 Query 306 DNGFDHPVRQ 315 DNGFD P+ + Sbjct 305 DNGFDKPLTK 314 >gi|120406543|ref|YP_956372.1| glycine betaine ABC transporter substrate-binding protein [Mycobacterium vanbaalenii PYR-1] gi|119959361|gb|ABM16366.1| Substrate-binding region of ABC-type glycine betaine transport system [Mycobacterium vanbaalenii PYR-1] Length=316 Score = 387 bits (994), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 199/315 (64%), Positives = 241/315 (77%), Gaps = 3/315 (0%) Query 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSA--TGSVKSIVVGSGDFPESQVIAE 58 M RR RRA VA A+ ++++C +++PLG +G +KSI VGS DF ES++IAE Sbjct 1 MICSRRTRRAAVAVAI-ALLAAVLSACGSSNPLGGGEISGDLKSIKVGSADFTESKIIAE 59 Query 59 IYAQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAV 118 IYAQ L+ANGF + R+ GIGSRETYI A++DHSIDL+PEY GNLL YF P++ T D+V Sbjct 60 IYAQALEANGFTISRQFGIGSRETYIPAVRDHSIDLIPEYTGNLLQYFDPESAATTPDSV 119 Query 119 ELELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQ 178 L L K LPGDLSIL PSPA D DT+ V+A TA RWNLK+IADLA HSA+VK APS FQ Sbjct 120 LLGLLKALPGDLSILYPSPAEDKDTLAVSAETAQRWNLKSIADLAAHSAEVKVGAPSEFQ 179 Query 179 TRPSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLV 238 TR +GL GL+ KY LDIAP NFV I+DGGG TV+AL +GT TAAN+FSTS AI ++ LV Sbjct 180 TRQTGLVGLKEKYGLDIAPANFVAISDGGGPATVKALTDGTVTAANIFSTSPAIERSALV 239 Query 239 VLEDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQ 298 VLEDP++ FLA N+VPLV S+K S+ LK VLDAVSAKLTT L ELN +V GN GVDPD+ Sbjct 240 VLEDPKNVFLAANVVPLVASQKMSNELKTVLDAVSAKLTTEALIELNTSVEGNQGVDPDE 299 Query 299 AARKWVRDNGFDHPV 313 AARKW+ DNGFD P+ Sbjct 300 AARKWISDNGFDTPI 314 >gi|145221799|ref|YP_001132477.1| glycine betaine ABC transporter substrate-binding protein [Mycobacterium gilvum PYR-GCK] gi|145214285|gb|ABP43689.1| Substrate-binding region of ABC-type glycine betaine transport system [Mycobacterium gilvum PYR-GCK] Length=316 Score = 369 bits (946), Expect = 4e-100, Method: Compositional matrix adjust. Identities = 183/289 (64%), Positives = 218/289 (76%), Gaps = 2/289 (0%) Query 27 CANADPLGSA--TGSVKSIVVGSGDFPESQVIAEIYAQVLQANGFDVGRRLGIGSRETYI 84 C +++PLG +G +K+I VGS DF ES++IAEIYAQ L+AN F + R+ GIGSRETYI Sbjct 26 CGSSNPLGGGEISGDLKTIKVGSADFTESKIIAEIYAQALEANDFTITRQFGIGSRETYI 85 Query 85 LALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDLSILTPSPASDTDTV 144 A++DHSIDL+PEY GNLL YF D+T T D V L L+ LPGDLSIL PSPA D DT+ Sbjct 86 PAVQDHSIDLIPEYTGNLLQYFDADSTATTPDEVLLALFNALPGDLSILYPSPAEDKDTL 145 Query 145 TVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIAPGNFVTIN 204 VT TA RWNL +IADLA S +VK APS FQTR +GL GL+ KY LDIAP NFV I+ Sbjct 146 AVTEETAQRWNLTSIADLAARSPEVKVGAPSEFQTRYTGLVGLKEKYGLDIAPANFVAIS 205 Query 205 DGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAGNIVPLVNSRKKSDH 264 DGGG TV+AL G TAAN+FSTS AI Q+ LVVL+DPE+ FLA N+VPLV S+K S Sbjct 206 DGGGPATVQALSSGAITAANIFSTSPAIEQSRLVVLDDPENVFLAANVVPLVASQKMSAE 265 Query 265 LKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDNGFDHPV 313 LK VLDAVSAKLTT L ELN +V GN G+DPD+AA+KW+ DNGFD P+ Sbjct 266 LKTVLDAVSAKLTTEALIELNTSVEGNQGIDPDEAAQKWIADNGFDRPI 314 >gi|315446464|ref|YP_004079343.1| periplasmic glycine betaine/choline-binding (lipo)protein of an ABC transporter (osmoprotectant binding protein) [Mycobacterium sp. Spyr1] gi|315264767|gb|ADU01509.1| periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Mycobacterium sp. Spyr1] Length=316 Score = 369 bits (946), Expect = 5e-100, Method: Compositional matrix adjust. Identities = 183/289 (64%), Positives = 218/289 (76%), Gaps = 2/289 (0%) Query 27 CANADPLGSA--TGSVKSIVVGSGDFPESQVIAEIYAQVLQANGFDVGRRLGIGSRETYI 84 C +++PLG +G +K+I VGS DF ES++IAEIYAQ L+AN F + R+ GIGSRETYI Sbjct 26 CGSSNPLGGGEISGDLKTIKVGSADFTESKIIAEIYAQALEANDFTITRQFGIGSRETYI 85 Query 85 LALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDLSILTPSPASDTDTV 144 A++DHSIDL+PEY GNLL YF D+T T D V L L+ LPGDLSIL PSPA D DT+ Sbjct 86 PAVQDHSIDLIPEYTGNLLQYFDADSTATTPDEVLLALFNALPGDLSILYPSPAEDKDTL 145 Query 145 TVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIAPGNFVTIN 204 VT TA RWNL +IADLA S +VK APS FQTR +GL GL+ KY LDIAP NFV I+ Sbjct 146 AVTEETAQRWNLTSIADLAARSPEVKVGAPSEFQTRYTGLVGLKEKYGLDIAPANFVAIS 205 Query 205 DGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAGNIVPLVNSRKKSDH 264 DGGG TV+AL G TAAN+FSTS AI Q+ LVVL+DPE+ FLA N+VPLV S+K S Sbjct 206 DGGGPATVQALSSGAITAANIFSTSPAIEQSRLVVLDDPENVFLAANVVPLVASQKMSAE 265 Query 265 LKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDNGFDHPV 313 LK VLDAVSAKLTT L ELN +V GN G+DPD+AA+KW+ DNGFD P+ Sbjct 266 LKTVLDAVSAKLTTEALIELNTSVEGNQGIDPDEAAQKWIADNGFDRPI 314 >gi|169627366|ref|YP_001701015.1| amino acid ABC transporter substrate-binding protein [Mycobacterium abscessus ATCC 19977] gi|169239333|emb|CAM60361.1| Probable amino acid ABC transporter, substrate binding [Mycobacterium abscessus] Length=310 Score = 364 bits (935), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 183/309 (60%), Positives = 232/309 (76%), Gaps = 3/309 (0%) Query 7 LRRATVAAAVWLATVCLVASCANADPLGSA--TGSVKSIVVGSGDFPESQVIAEIYAQVL 64 +RRA +A + + C +A+PLG +G++ +++VGS DFPES+ +AE+YAQ+L Sbjct 1 MRRAAQLLVAVMAAI-FFSGCGSANPLGGGPLSGNLNTLIVGSADFPESKTVAELYAQIL 59 Query 65 QANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYK 124 Q NGFDV R+LGIGSRETYI A+KDHSIDL+ +Y GNLL YF P+AT T D VEL L + Sbjct 60 QINGFDVTRQLGIGSRETYIPAVKDHSIDLIADYTGNLLRYFDPEATATKPDEVELALLR 119 Query 125 RLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGL 184 +L GDL IL+PSPA+D DT+ VT ATA +WNL++I DLA HSA+V APS F R GL Sbjct 120 KLDGDLDILSPSPAADADTLCVTRATAEKWNLRSIGDLAAHSAEVTVGAPSEFLHRSVGL 179 Query 185 PGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPE 244 GL+ Y LDI FV I+DGGG TV+ALV+GT T AN+FSTS AI ++ LVVL+DP+ Sbjct 180 AGLKANYGLDIPESRFVAISDGGGPATVKALVDGTITTANIFSTSPAIAEHDLVVLDDPK 239 Query 245 HNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWV 304 F AGN+VPLVN++KKS+ LK VLDA+SA+LTTA L LNAAVSGN+GVDP +AA+KW+ Sbjct 240 FTFPAGNLVPLVNAQKKSEKLKKVLDALSARLTTADLTGLNAAVSGNNGVDPKEAAQKWL 299 Query 305 RDNGFDHPV 313 D GFD PV Sbjct 300 TDKGFDKPV 308 >gi|226365473|ref|YP_002783256.1| ABC transporter substrate-binding protein [Rhodococcus opacus B4] gi|226243963|dbj|BAH54311.1| putative ABC transporter substrate-binding protein [Rhodococcus opacus B4] Length=331 Score = 315 bits (808), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 168/320 (53%), Positives = 211/320 (66%), Gaps = 9/320 (2%) Query 2 RMLRRLRRATVAAAVWLATVCLV--ASCAN--ADPLGSATGSV----KSIVVGSGDFPES 53 R+L R +V + + LATV +V A+C +DPL +I+VGS +FPES Sbjct 12 RILSGFTRRSVGS-IALATVAVVSLAACGGGGSDPLSGGGEGSGDDPNAIIVGSANFPES 70 Query 54 QVIAEIYAQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVT 113 + +A IY +VL+ANGFDV + IGSRE YI ALKD SID++P+Y GNLL Y PD+T T Sbjct 71 ETVANIYTEVLRANGFDVTTKFNIGSREAYIPALKDGSIDVIPDYTGNLLQYLDPDSTAT 130 Query 114 MLDAVELELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAA 173 V+ L L +L+I TP+PA D D V VT TA RWNL +IADLA HS +VKF A Sbjct 131 SAADVDAALPAALGSELTITTPAPAEDKDAVVVTKETAERWNLTSIADLAAHSNEVKFGA 190 Query 174 PSAFQTRPSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIP 233 P+ FQ RP GLPGL+ KY LDI P NFV I DGGG TV AL G TAA++F+TS AI Sbjct 191 PAEFQERPGGLPGLKAKYGLDITPDNFVPIADGGGPATVDALASGQITAADIFTTSPAIA 250 Query 234 QNHLVVLEDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSG 293 QN VVL DP++NF A N+VP++ + K SD L LDA+SAKLTT L LN +VSG++ Sbjct 251 QNGFVVLADPQNNFAAQNVVPVLRTTKSSDKLTRALDALSAKLTTEELVALNNSVSGDAK 310 Query 294 VDPDQAARKWVRDNGFDHPV 313 +P AA++WV D G D PV Sbjct 311 TEPAAAAKQWVTDQGLDKPV 330 >gi|229493759|ref|ZP_04387541.1| ABC amino acid transporter, substrate binding component [Rhodococcus erythropolis SK121] gi|229319359|gb|EEN85198.1| ABC amino acid transporter, substrate binding component [Rhodococcus erythropolis SK121] Length=312 Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 170/314 (55%), Positives = 210/314 (67%), Gaps = 4/314 (1%) Query 1 MRMLR-RLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEI 59 MR R R R VAAA ++ L A C ++D G + +IVVGS +F ES+ IA I Sbjct 1 MRTSRFRSNRWLVAAATVVSLTALTA-CGSSD--GDSNSDPNAIVVGSANFTESETIANI 57 Query 60 YAQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVE 119 YA+ L+ NGFDV +GSRE YI ALKD SI ++P+Y GNLL Y PD+T T V Sbjct 58 YAEALRVNGFDVSTSFNVGSREAYIPALKDGSISVIPDYTGNLLQYLDPDSTATSSADVL 117 Query 120 LELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQT 179 L L +L+I TP+ A D D V VT TA +WNLKTIADLAPHSA+VKF AP+ FQ Sbjct 118 AALPAALGSELAIATPASAEDKDAVVVTKETADKWNLKTIADLAPHSAEVKFGAPAEFQE 177 Query 180 RPSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVV 239 RP+GLPGL+ Y LDI+ NFV I DGGG TV+AL G TAAN+F+TSA+IP+N+ VV Sbjct 178 RPAGLPGLKSNYGLDISAANFVPIADGGGPATVKALSSGDITAANIFTTSASIPENNFVV 237 Query 240 LEDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQA 299 LEDP++NF A N+VP++ + K SD LK VLDAVSAKLTT L LN VSG++ +P A Sbjct 238 LEDPKNNFPAQNVVPVLRASKSSDKLKTVLDAVSAKLTTEELLALNVQVSGDTKTEPAAA 297 Query 300 ARKWVRDNGFDHPV 313 A+ WV G D PV Sbjct 298 AKAWVTAQGLDKPV 311 >gi|226307615|ref|YP_002767575.1| ABC transporter substrate-binding protein [Rhodococcus erythropolis PR4] gi|226186732|dbj|BAH34836.1| putative ABC transporter substrate-binding protein [Rhodococcus erythropolis PR4] Length=312 Score = 313 bits (801), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 169/314 (54%), Positives = 209/314 (67%), Gaps = 4/314 (1%) Query 1 MRMLR-RLRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEI 59 MR R R R VAAA ++ L A C ++D G + ++VVGS +F ES+ IA I Sbjct 1 MRTSRFRSNRWLVAAATVVSLTALTA-CGSSD--GDSNSDPNAVVVGSANFTESETIANI 57 Query 60 YAQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVE 119 YA+ L+ NGFDV +GSRE YI ALKD SI ++P+Y GNLL Y PD+T T V Sbjct 58 YAEALRVNGFDVSTSFNVGSREAYIPALKDGSISVIPDYTGNLLQYLDPDSTATSSADVL 117 Query 120 LELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQT 179 L L +L+I TP+ A D D V VT TA +WNLKTIADLAPHSA+VKF AP+ FQ Sbjct 118 AALPAALGSELAIATPASAEDKDAVVVTKETAEKWNLKTIADLAPHSAEVKFGAPAEFQE 177 Query 180 RPSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVV 239 RP+GLPGL+ Y LDI+ NFV I DGGG TV+AL G TAAN+F+TSA+IP N+ VV Sbjct 178 RPAGLPGLKSNYGLDISAANFVPIADGGGPATVKALSSGDITAANIFTTSASIPANNFVV 237 Query 240 LEDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQA 299 LEDP++NF A N+VP++ + K SD LK VLDAVSAKLTT L LN VSG++ +P A Sbjct 238 LEDPKNNFPAQNVVPVLRASKSSDKLKTVLDAVSAKLTTEELLALNVQVSGDTKTEPAAA 297 Query 300 ARKWVRDNGFDHPV 313 A+ WV G D PV Sbjct 298 AKAWVTAQGLDKPV 311 >gi|111022967|ref|YP_705939.1| amino acid ABC transporter substrate-binding protein [Rhodococcus jostii RHA1] gi|110822497|gb|ABG97781.1| ABC amino acid transporter, substrate binding component [Rhodococcus jostii RHA1] Length=324 Score = 312 bits (800), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 169/320 (53%), Positives = 212/320 (67%), Gaps = 9/320 (2%) Query 2 RMLRRLRRATVAAAVWLATVCLV--ASCAN--ADPL---GSATGS-VKSIVVGSGDFPES 53 R+L R +V + + LATV +V A+C +DPL G +G +I+VGS +FPES Sbjct 5 RILSGFTRRSVGS-IALATVAVVSLAACGGGGSDPLSAGGEGSGDDPNTIIVGSANFPES 63 Query 54 QVIAEIYAQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVT 113 + +A IY +VL+ANGFDV + IGSRE YI ALKD SID++P+Y GNLL Y PD+ T Sbjct 64 ETVANIYTEVLRANGFDVTTKFNIGSREAYIPALKDGSIDVIPDYTGNLLQYLDPDSNAT 123 Query 114 MLDAVELELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAA 173 V+ L L +L+I TP+PA D D V VT TA RWNL +IADLA HS +VKF A Sbjct 124 SAADVDAALPTALGSELTITTPAPAEDKDAVVVTKETAQRWNLTSIADLAAHSNEVKFGA 183 Query 174 PSAFQTRPSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIP 233 P+ FQ RP GLPGL+ KY LDI NFV I DGGG TV AL G TAA++F+TS AI Sbjct 184 PAEFQERPGGLPGLKAKYGLDITADNFVPIADGGGPATVDALASGQITAADIFTTSPAIA 243 Query 234 QNHLVVLEDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSG 293 QN VVL DP++NF A N+VP+V + K SD L LDA+SAKLTT L LN +VSG++ Sbjct 244 QNGFVVLADPQNNFAAQNVVPVVRAPKSSDKLTRALDALSAKLTTEELVALNDSVSGDAK 303 Query 294 VDPDQAARKWVRDNGFDHPV 313 +P AA++WV D G D PV Sbjct 304 TEPAAAAKQWVTDQGLDKPV 323 >gi|118470013|ref|YP_890551.1| ABC transporter substrate-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118171300|gb|ABK72196.1| ABC transporter, quaternary amine uptake transporter (QAT) family protein, substrate-binding protein [Mycobacterium smegmatis str. MC2 155] Length=229 Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 152/227 (67%), Positives = 175/227 (78%), Gaps = 0/227 (0%) Query 87 LKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDLSILTPSPASDTDTVTV 146 ++DHSIDL+PEY GNLL YF P+ T DAV L L+K LPGDLSIL PSPA D DT+ V Sbjct 1 MQDHSIDLIPEYTGNLLQYFDPETPATTPDAVLLGLFKALPGDLSILYPSPAEDKDTLAV 60 Query 147 TAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIAPGNFVTINDG 206 T TA RWNLK+I DLA HSA+VK PS FQTR +GL GL+ KY LDIAP NFV I+DG Sbjct 61 TEETAQRWNLKSIEDLAQHSAEVKVGGPSEFQTRQTGLVGLKSKYGLDIAPANFVAISDG 120 Query 207 GGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAGNIVPLVNSRKKSDHLK 266 GG TV+AL G TAAN+FSTS AI Q+HLVVLEDP++ FLA N+VPLV S+K S+ LK Sbjct 121 GGPATVQALNSGAITAANIFSTSPAIEQHHLVVLEDPKNVFLAANVVPLVASQKMSNELK 180 Query 267 DVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDNGFDHPV 313 VLDAVSAKLTT L E+N AV GN+GVDPD+AA KWV DNGFD P+ Sbjct 181 TVLDAVSAKLTTEALIEMNTAVEGNAGVDPDEAAAKWVADNGFDKPI 227 >gi|312138893|ref|YP_004006229.1| glycine/betaine ABC transporter substrate-binding protein [Rhodococcus equi 103S] gi|325676400|ref|ZP_08156078.1| amino acid ABC superfamily ATP binding cassette transporter, binding protein [Rhodococcus equi ATCC 33707] gi|311888232|emb|CBH47544.1| putative ABC-type glycine betaine transporter substrate binding lipoprotein [Rhodococcus equi 103S] gi|325552578|gb|EGD22262.1| amino acid ABC superfamily ATP binding cassette transporter, binding protein [Rhodococcus equi ATCC 33707] Length=315 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 167/315 (54%), Positives = 203/315 (65%), Gaps = 8/315 (2%) Query 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPL--GSATGSVKSIVVGSGDFPESQVIAE 58 +R RRL +A C DPL G + G +IVVGS +FPES+ +A Sbjct 6 IRTRRRLGTGLIALLALSLAAC------GGDPLDSGGSGGDTDAIVVGSANFPESETVAF 59 Query 59 IYAQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAV 118 +YA+ LQANGFDV R+ IGSRE YI AL+D S+ L+P+Y GNLL Y +T T + Sbjct 60 VYAEALQANGFDVQTRMNIGSREVYIPALRDGSLTLIPDYTGNLLEYIDSASTATTAAEI 119 Query 119 ELELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQ 178 + L L DL+I TP+PA D D V VT TA +WNL +IADLA HSA+V FAAP+ FQ Sbjct 120 DAALPAALAPDLAITTPAPAEDKDAVVVTRETAEKWNLTSIADLAAHSAEVTFAAPAEFQ 179 Query 179 TRPSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLV 238 R GLPGLR Y LDIAP NFV I DGGG TV+AL G TAAN+F+TS AI N LV Sbjct 180 ERSVGLPGLRENYGLDIAPANFVPIGDGGGPATVKALTSGQVTAANIFTTSPAIEANDLV 239 Query 239 VLEDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQ 298 VL DP +NF A N+VPL+ + K+D L VLDAVSAKLTT L +LN AVSG+S +P Sbjct 240 VLTDPANNFPAQNVVPLMRASAKTDQLSRVLDAVSAKLTTEELVDLNDAVSGDSKTEPQA 299 Query 299 AARKWVRDNGFDHPV 313 AA++WV G D PV Sbjct 300 AAKQWVARQGLDTPV 314 >gi|317508894|ref|ZP_07966531.1| hypothetical protein HMPREF9336_02903 [Segniliparus rugosus ATCC BAA-974] gi|316252778|gb|EFV12211.1| hypothetical protein HMPREF9336_02903 [Segniliparus rugosus ATCC BAA-974] Length=314 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 130/317 (42%), Positives = 192/317 (61%), Gaps = 10/317 (3%) Query 1 MRMLRRLRRATVAAAVWLATVCLVASCANADPLGSATGS---VKSIVVGSGDFPESQVIA 57 MR RL + A + L ASC ++DP + TG+ ++VVGS PES+ +A Sbjct 1 MRSWIRLTALSAALGI------LSASCGSSDPFSTDTGADPDPNTVVVGSAAIPESEAVA 54 Query 58 EIYAQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDA 117 +IY L+ANGF G + G+G RE YI AL I +VPEY GNLL Y + + Sbjct 55 DIYILALRANGFHAGGKQGVGQREGYIPALSAGQISVVPEYTGNLLHYLSQNTKAATAEQ 114 Query 118 VELELYKRLPG-DLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSA 176 ++ EL + L L P+PAS+TD++TVT A W L +IADLAPH+++ K A + Sbjct 115 IKAELDQALAAVKLVAYAPAPASNTDSITVTKKLAQSWGLASIADLAPHASEFKVAGNAE 174 Query 177 FQTRPSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNH 236 F+ R GL GL+ Y + + +FV IND G T++AL EG A++++T+ A+ + Sbjct 175 FRQRSQGLAGLQEIYGISVPADHFVPINDSSGPATIKALREGQVQGADVYTTTPALAEGD 234 Query 237 LVVLEDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDP 296 LV L DP+ F N+VP+V++RK + L+ VLDAVSA+LTT LA++N A+SG+ G +P Sbjct 235 LVALADPKGLFPPNNVVPIVSARKDTPKLRRVLDAVSAQLTTEDLAQINRAISGDGGQEP 294 Query 297 DQAARKWVRDNGFDHPV 313 ++AA W++ +G D P+ Sbjct 295 EEAAAGWLKAHGLDRPL 311 >gi|116671385|ref|YP_832318.1| substrate-binding region of ABC-type glycine betaine transport system [Arthrobacter sp. FB24] gi|116611494|gb|ABK04218.1| Substrate-binding region of ABC-type glycine betaine transport system [Arthrobacter sp. FB24] Length=318 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 134/312 (43%), Positives = 189/312 (61%), Gaps = 8/312 (2%) Query 3 MLRRLRRATVAAAVWLATVCLVASCANADPLGSA-----TGSVKSIVVGSGDFPESQVIA 57 +L R +AA V LA + L A +DPLGSA +GS ++V+GS DFPESQ+IA Sbjct 8 ILGRRAFGGLAAGVGLA-LALSACGGGSDPLGSAPATGGSGSGSALVIGSADFPESQIIA 66 Query 58 EIYAQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDA 117 EIYA L A G + IGSRE Y A++D S+D++P+Y GNLLL+ +AT + Sbjct 67 EIYAGALNAAGVTASTKPNIGSREVYFKAVQDGSVDVIPDYSGNLLLHVNKEATEVSAED 126 Query 118 VELELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAF 177 + L +LP L++L S A D D + VT ATA ++ LK+I DLA +++ AP+ F Sbjct 127 IYKALPAKLPEGLAVLEASKAEDKDAMVVTKATAEKYQLKSIEDLAKVCSELVVGAPATF 186 Query 178 QTRPSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHL 237 R GLPGL+ YS + P +DGGG +TV+AL+E A++++T+ AI N L Sbjct 187 AERAYGLPGLKKNYSCE--PKKLEPFSDGGGPITVKALLEDKVQVADIYTTTPAIADNDL 244 Query 238 VVLEDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPD 297 VVL+DP++NF+A ++PL N K +D K+ L++VS LTT L LN AVSG +P Sbjct 245 VVLDDPKNNFIAQQVLPLYNKAKMTDKAKEALNSVSKILTTEDLINLNRAVSGTQKQNPK 304 Query 298 QAARKWVRDNGF 309 AA W++D G Sbjct 305 DAAAAWLKDKGL 316 >gi|331698881|ref|YP_004335120.1| glycine betaine ABC transporter periplasmic subunit [Pseudonocardia dioxanivorans CB1190] gi|326953570|gb|AEA27267.1| ABC-type glycine betaine transport, periplasmic subunit [Pseudonocardia dioxanivorans CB1190] Length=306 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 126/268 (48%), Positives = 165/268 (62%), Gaps = 3/268 (1%) Query 42 SIVVGSGDFPESQVIAEIYAQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGN 101 ++V+GS +F ESQ+IA IYAQ LQA G V R IGSRETY A+K+ SIDL+PEY G Sbjct 42 TVVIGSANFVESQIIANIYAQALQAKGVKVDLRPPIGSRETYFPAIKEGSIDLIPEYTGT 101 Query 102 LLLYFQPDATVTMLDAVELELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIAD 161 LL Y +AT T DAV L LP +L++L + A D D V VT TA ++N +IAD Sbjct 102 LLQYLNKNATETEPDAVYTALKAALPDNLTVLDKAAAEDKDAVVVTKDTATKYNATSIAD 161 Query 162 LAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTAT 221 LAP+ + F P FQTRP G+PG++ Y+ + D GG +TV AL G Sbjct 162 LAPNCGQLTFGGPPEFQTRPDGIPGIQKTYNCTFKEYKAL---DAGGPLTVAALKNGDIQ 218 Query 222 AANLFSTSAAIPQNHLVVLEDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGL 281 AA++F+T A+IP N VVL DP+ NF A N+VPL+N K + DVL+ +SAKLTT GL Sbjct 219 AADIFTTDASIPTNGFVVLTDPKDNFAAQNVVPLINKAKGTGTTADVLNQISAKLTTEGL 278 Query 282 AELNAAVSGNSGVDPDQAARKWVRDNGF 309 +LNA S ++ A+ W+ NGF Sbjct 279 TQLNAEASSDAKPSLATVAKNWLSQNGF 306 >gi|111019583|ref|YP_702555.1| amino acid ABC transporter substrate-binding protein [Rhodococcus jostii RHA1] gi|110819113|gb|ABG94397.1| ABC amino acid transporter, substrate binding component [Rhodococcus jostii RHA1] Length=302 Score = 232 bits (592), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 133/305 (44%), Positives = 179/305 (59%), Gaps = 7/305 (2%) Query 7 LRRATVAAAVWLATVCLVASCANADPLGSATG--SVKSIVVGSGDFPESQVIAEIYAQVL 64 +++A + A + L A DPL S G S +IVVGS DFPESQ+IA IYA+ L Sbjct 1 MKKALIVALTGATLMSLTACGIGKDPLASDDGGSSDGAIVVGSADFPESQLIATIYAEAL 60 Query 65 QANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYK 124 +ANG DV +L IGSRE Y+ A++D SIDL+PEY G LL Y T T D V E+ Sbjct 61 RANGIDVTEKLNIGSREVYVPAIRDGSIDLLPEYSGALLQYLDSATTATASDEVTEEIKA 120 Query 125 RLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGL 184 +LP L L PSPA D D + V TA ++L+TI DL PH+ ++ P ++TR +G+ Sbjct 121 KLPAGLIALEPSPAEDKDVLAVRQETADEYSLETIEDLVPHADELTLGGPPEWKTRENGV 180 Query 185 PGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPE 244 GLR KY L F+ + D GG +T+ AL+ G A++FST A+ +LV LED + Sbjct 181 AGLRDKYGLTFK--EFLAL-DAGGPLTLNALLSGQIEVADVFSTDPAMRSENLVALEDTK 237 Query 245 HNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWV 304 H FLA NI P++N K D ++ VL VSA LTT L E+N V+ D AR+W+ Sbjct 238 HLFLAENITPIINENKAGDDVRGVLADVSAALTTDDLIEMNQRVADLE--DMGDIAREWL 295 Query 305 RDNGF 309 +D G Sbjct 296 QDKGL 300 >gi|325964040|ref|YP_004241946.1| periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transporter (osmoprotectant binding protein) [Arthrobacter phenanthrenivorans Sphe3] gi|323470127|gb|ADX73812.1| periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Arthrobacter phenanthrenivorans Sphe3] Length=320 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 130/317 (42%), Positives = 190/317 (60%), Gaps = 11/317 (3%) Query 2 RMLRRL-RRATVAAAVWLATVCLVASCA-NADPL-------GSATGSVKSIVVGSGDFPE 52 R +RL RR A L +++C ++DPL G A+G S+VVGS DFPE Sbjct 4 RHPQRLGRRGFGGLAAGLGLAVALSACGGSSDPLSEAPATSGPASGEATSLVVGSADFPE 63 Query 53 SQVIAEIYAQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATV 112 SQ++AE+YA L A+G + IGSRE Y A++D S+D+VP+Y GNLLL+ AT Sbjct 64 SQIVAELYAGALNASGVTATTKPNIGSREVYFKAVQDGSVDVVPDYTGNLLLHVDKAATE 123 Query 113 TMLDAVELELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFA 172 + + L ++LP L++L PS A + D + VT ATA ++ LK+I DLA +++ Sbjct 124 ESAEDIAKALPEKLPDGLAVLEPSKAENKDAMVVTKATAEKYQLKSIEDLAKVCSEIVVG 183 Query 173 APSAFQTRPSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAI 232 AP+ F R GLPGL+ Y+ + P +DGGG VT++AL+E A++++T+ +I Sbjct 184 APATFAERAYGLPGLKENYNCE--PRKLEPFSDGGGPVTLKALLEDQVQVADIYTTTPSI 241 Query 233 PQNHLVVLEDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNS 292 N LVVLEDP++NF+A +VPL N K +D K+ L++VS LTT L LN AVSG+ Sbjct 242 ADNDLVVLEDPKNNFIAQQVVPLYNEAKMTDKAKEALNSVSRILTTEDLINLNRAVSGSQ 301 Query 293 GVDPDQAARKWVRDNGF 309 +AA W+++ G Sbjct 302 KQGAKEAADAWLKEKGI 318 >gi|296394993|ref|YP_003659877.1| glycine betaine ABC transporter substrate-binding protein [Segniliparus rotundus DSM 44985] gi|296182140|gb|ADG99046.1| Substrate-binding region of ABC-type glycine betaine transport system [Segniliparus rotundus DSM 44985] Length=314 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 132/309 (43%), Positives = 184/309 (60%), Gaps = 4/309 (1%) Query 7 LRRATVAAAVWLATVCLVASCANADPL--GSATGSVKS-IVVGSGDFPESQVIAEIYAQV 63 +R T AA A L A ++DP G+ T S S I VGS PES+VIA+IY Q Sbjct 1 MRSRTGFAATVTALALLSACGTSSDPFSSGAETDSDPSTITVGSAASPESEVIADIYIQA 60 Query 64 LQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELY 123 L+ANGF G + G+G RE YI AL I ++PEY GNLL Y A + +++EL Sbjct 61 LRANGFHAGGKQGVGQREGYIPALSSGEISVIPEYTGNLLRYVNKAAKAVTAEQIKIELD 120 Query 124 KRLPG-DLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPS 182 + L L TP+PAS+TD++TVT A W L +IADLA H A+ + A + FQ R Sbjct 121 QALVSVKLVAYTPAPASNTDSITVTKKLAQSWGLSSIADLAAHVAEFEVAGNAEFQQRHE 180 Query 183 GLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLED 242 GL GL+ Y +D+ +F+ IND G T+ AL + A A++++T+ A+ + L+VL+D Sbjct 181 GLAGLKDVYGIDVPADHFMAINDSSGPATIEALRKNQAQGADVYTTTPALAEGDLLVLDD 240 Query 243 PEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARK 302 P+ F N+VP+V+ RK S L+ VLDAVSA+LTT L LN A+SG +P+ AA Sbjct 241 PKGLFPPNNVVPVVSLRKDSPKLRRVLDAVSAQLTTQDLTMLNRAISGQGEQEPEDAAAA 300 Query 303 WVRDNGFDH 311 W++ + DH Sbjct 301 WLKAHSLDH 309 >gi|119963096|ref|YP_948524.1| glycine betaine/choline-binding protein of an ABC-type transport system [Arthrobacter aurescens TC1] gi|119949955|gb|ABM08866.1| glycine betaine/choline-binding protein of an ABC-type transport system [Arthrobacter aurescens TC1] Length=318 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 127/286 (45%), Positives = 172/286 (61%), Gaps = 4/286 (1%) Query 24 VASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQANGFDVGRRLGIGSRETY 83 +A+ + + P GSA G S+VVGS DFPESQVIAEIY L A G + IGSRE Y Sbjct 35 LATPSTSAPSGSAAGG--SLVVGSADFPESQVIAEIYVGALNAAGLTATSKPNIGSREIY 92 Query 84 ILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDLSILTPSPASDTDT 143 A++D S+DLVP+Y GNLL Y +AT + V L +LP L++L P+ A D Sbjct 93 FKAVQDGSVDLVPDYSGNLLSYVDTEATEVSAEDVYKALPGKLPDGLAVLEPAKAESKDA 152 Query 144 VTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIAPGNFVTI 203 + VT ATA ++ LK+I DLA D AAP+ F+TR G PGL+ Y ++ Sbjct 153 MVVTKATAEKYQLKSIEDLAKVCKDFTMAAPATFETRAYGFPGLKANYGCELK--GLQPF 210 Query 204 NDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAGNIVPLVNSRKKSD 263 NDGGG +T++AL+E A++++T+ +I N LVVLEDP++NF A ++PLV K +D Sbjct 211 NDGGGNLTLQALLEDKVQVADIYTTTPSIADNDLVVLEDPKNNFKAQQVLPLVKEAKMTD 270 Query 264 HLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDNGF 309 K+ L+ VS LTT L LN AVSG+ P AA W++D G Sbjct 271 KAKEALNNVSKILTTDDLINLNRAVSGDQKQSPKDAAAAWLKDKGI 316 >gi|255327621|ref|ZP_05368687.1| substrate-binding region of ABC-type glycine betaine transport system [Rothia mucilaginosa ATCC 25296] gi|255295295|gb|EET74646.1| substrate-binding region of ABC-type glycine betaine transport system [Rothia mucilaginosa ATCC 25296] Length=321 Score = 229 bits (584), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 130/315 (42%), Positives = 188/315 (60%), Gaps = 21/315 (6%) Query 8 RRATVAAAVWLATVCLVASCA-NADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQA 66 RR + AA L ++++C + D + S G + I+VGS F ESQ++AEIYA L Sbjct 15 RRTALTAAGALGMAGILSACGLSGDKVFS--GEHEGIIVGSAAFAESQILAEIYAGALAR 72 Query 67 NGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRL 126 +GF+ +L IG+RE Y+ AL ++D++P+Y GNLLLY P AT E+ + L Sbjct 73 SGFNARTQLSIGAREAYLGALASGAVDVIPDYSGNLLLYLDPKATANTAQ----EILRAL 128 Query 127 PGDLSILT------------PSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAP 174 P L LT S A D D++ VTA TA +++L+++ DLA ++K A Sbjct 129 PAALGTLTTGGSGAEIRALNASEAEDKDSLVVTAQTAQKYSLRSLEDLASRCTNLKLGAA 188 Query 175 SAFQTRPSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQ 234 F R G+PGL+ KY P FV ++DGGGA+TV+AL++ T +L+ST+ AI Q Sbjct 189 PEFAERAYGIPGLKEKYG--CVPAEFVPLSDGGGALTVKALLDDTVQVVDLYSTTPAIEQ 246 Query 235 NHLVVLEDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGV 294 N LVVLEDP++ LA ++P++N+ + D +VL+ VSAKLTTA L LN VSG S Sbjct 247 NKLVVLEDPKNMILAQQVLPIINTSRVPDSAAEVLNRVSAKLTTADLRTLNDRVSGTSKQ 306 Query 295 DPDQAARKWVRDNGF 309 +P QAA W+ ++GF Sbjct 307 EPAQAAAAWLNEHGF 321 >gi|229489100|ref|ZP_04382966.1| ABC amino acid transporter, substrate binding component [Rhodococcus erythropolis SK121] gi|229324604|gb|EEN90359.1| ABC amino acid transporter, substrate binding component [Rhodococcus erythropolis SK121] Length=302 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 130/308 (43%), Positives = 180/308 (59%), Gaps = 13/308 (4%) Query 7 LRRATVAAAVWLATVCLVASCANADPL-----GSATGSVKSIVVGSGDFPESQVIAEIYA 61 +++ +AA V + V L + DPL GSA G+ IV+GS DFPESQ+IA IYA Sbjct 1 MKKVLIAALVGVTAVALSSCGIGKDPLATDGGGSAEGA---IVIGSADFPESQLIATIYA 57 Query 62 QVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELE 121 + L+ANG DV +L IGSRE Y+ AL+D SIDL+PEY G LL Y T T D V E Sbjct 58 EALRANGIDVTEKLNIGSRELYVPALRDGSIDLIPEYSGALLQYLDSKTTATASDEVSAE 117 Query 122 LYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRP 181 + +LP L L PSPA D D + V TA +++L+T+ DL H+ ++ P ++TR Sbjct 118 IDAKLPKGLVALEPSPAEDKDVLAVKQETAEKYSLETVEDLVQHADELTLGGPPEWKTRE 177 Query 182 SGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLE 241 +G+ GL+ KY L F+ + D GG +T+ AL+ G A++FST A+ +LV LE Sbjct 178 NGVAGLKTKYGLTFR--EFLAL-DAGGPLTLNALLSGQIQVADVFSTDPAMRSENLVALE 234 Query 242 DPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAAR 301 D +H FLA NI P++N K D ++ VL VSA LTT L E+N V+ D A+ Sbjct 235 DTKHLFLAENITPIINELKARDDVRSVLAGVSAALTTEDLIEMNQRVADLD--DMSDIAQ 292 Query 302 KWVRDNGF 309 W++ N Sbjct 293 DWLQKNSL 300 >gi|283458826|ref|YP_003363468.1| ABC transporter periplasmic glycine betaine/choline-binding (lipo)protein [Rothia mucilaginosa DY-18] gi|283134883|dbj|BAI65648.1| periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system [Rothia mucilaginosa DY-18] Length=324 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 127/315 (41%), Positives = 188/315 (60%), Gaps = 21/315 (6%) Query 8 RRATVAAAVWLATVCLVASCA-NADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQA 66 RR + AA L ++++C + D + S G + I+VGS F ESQ++AEIYA L Sbjct 18 RRTALTAAGALGMAGILSACGLSGDKVFS--GEHEGIIVGSAAFAESQILAEIYAGALAR 75 Query 67 NGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRL 126 GF+ +L IG+RE Y+ AL ++D++P+Y GNLLLY P AT + + ++ + L Sbjct 76 AGFNARTQLSIGAREAYLGALASGAVDVIPDYSGNLLLYLDPKATASTAE----QILQAL 131 Query 127 PG------------DLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAP 174 P ++ L S A D D++ VTA TA ++ L+++ DLA ++K A Sbjct 132 PAALGTLKTDGSGAEIRALNASEAEDKDSLVVTAQTAQKYGLRSLEDLASRCTNLKLGAA 191 Query 175 SAFQTRPSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQ 234 F R G+PGL+ KY P FV ++DGGGA+TV+AL++ T +L+ST+ AI Q Sbjct 192 PEFAERAYGIPGLKEKYG--CVPAEFVPLSDGGGALTVKALLDDTVQVVDLYSTTPAIEQ 249 Query 235 NHLVVLEDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGV 294 N LVVLEDP++ LA ++P++N+ + D +VL+ VSAKLTTA L LN VSG S Sbjct 250 NQLVVLEDPKNMILAQQVLPIINTSRVPDSAAEVLNRVSAKLTTADLRTLNDRVSGTSKQ 309 Query 295 DPDQAARKWVRDNGF 309 +P QAA W+ ++GF Sbjct 310 EPAQAAATWLNEHGF 324 >gi|226361731|ref|YP_002779509.1| ABC transporter substrate-binding protein [Rhodococcus opacus B4] gi|226240216|dbj|BAH50564.1| putative ABC transporter substrate-binding protein [Rhodococcus opacus B4] Length=303 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 130/306 (43%), Positives = 176/306 (58%), Gaps = 8/306 (2%) Query 7 LRRATVAAAVWLATVCLVASCANADPL---GSATGSVKSIVVGSGDFPESQVIAEIYAQV 63 + +A + A V L A DPL G S +IVVGS DFPESQ+IA IYA+ Sbjct 1 MMKALIVALAGATLVSLTACGIGKDPLAADGGGGSSEGAIVVGSADFPESQLIATIYAEA 60 Query 64 LQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELY 123 L+ANG DV +L IGSRE Y+ A++D SIDL+PEY G LL Y T T D V E+ Sbjct 61 LRANGIDVTEKLNIGSREVYVPAIRDGSIDLLPEYSGALLQYLDSATTATASDEVTEEIK 120 Query 124 KRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSG 183 +LP L L PSPA D D + V TA ++L+TI DL PH+ ++ P ++TR +G Sbjct 121 AKLPAGLIALEPSPAEDKDVLAVRQETADEYSLETIEDLVPHAGELTLGGPPEWKTRENG 180 Query 184 LPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDP 243 + GL+ +Y L F+ + D GG +T+ AL+ G A++FST A+ +LV LED Sbjct 181 VAGLKDRYGLTFK--EFLAL-DAGGPLTLNALLSGQIEVADVFSTDPAMRSENLVALEDT 237 Query 244 EHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKW 303 +H FLA NI P++N K D ++ VL VSA LTT L +N V+ D AR+W Sbjct 238 KHLFLAENITPIINENKAGDDVRAVLADVSAALTTEDLIAMNERVADLE--DMGDIAREW 295 Query 304 VRDNGF 309 ++D G Sbjct 296 LQDKGL 301 >gi|184199682|ref|YP_001853889.1| putative ABC transporter substrate-binding protein [Kocuria rhizophila DC2201] gi|183579912|dbj|BAG28383.1| putative ABC transporter substrate-binding protein [Kocuria rhizophila DC2201] Length=322 Score = 225 bits (574), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 133/316 (43%), Positives = 186/316 (59%), Gaps = 16/316 (5%) Query 6 RLRRATVAAAVWLATVCLVASCANADPLG-----SATGSVKSIVVGSGDFPESQVIAEIY 60 R R A A A + L A +DPL ++ GS S+ VGS DFPESQ++AE+Y Sbjct 11 RWRPAAFAGVAASAVLALTACSGGSDPLADKNDDASGGSSDSVTVGSADFPESQIVAELY 70 Query 61 AQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVEL 120 A VL+ G V + GIG+RE Y+ A+KD S+D+VP+Y GNLLL+ +AT A Sbjct 71 AGVLRDAGVKVETKPGIGAREAYVGAVKDGSVDVVPDYSGNLLLFADKNATA----ASAE 126 Query 121 ELYKRLPG-----DLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPS 175 ++ K LP DLS+L S A D D + VT ATA ++ LK+ DL+ D+ A P Sbjct 127 DIVKALPDSLKNQDLSVLDASKAEDKDALVVTQATAEKYGLKSATDLSSVCKDLVMAGPP 186 Query 176 AFQTRPSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQN 235 FQ R G GL+ KY D + +F INDGGG +TV+AL +G A A++F+T+ AI Sbjct 187 EFQERAYGTKGLKEKY--DCSFKSFQPINDGGGPLTVQALTKGDAQVADIFTTTPAIQDE 244 Query 236 HLVVLEDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVD 295 +LVVL+DP++NF+A ++PL + D L+ S KLTT L +LN VSG + Sbjct 245 NLVVLDDPKNNFIAQQVLPLTAPDRLPQKAVDALNQFSTKLTTQDLIDLNREVSGGEQQN 304 Query 296 PDQAARKWVRDNGFDH 311 P AA++W+ D+G+D Sbjct 305 PGDAAKQWLADHGYDK 320 >gi|220913299|ref|YP_002488608.1| glycine betaine ABC transporter substrate-binding protein [Arthrobacter chlorophenolicus A6] gi|219860177|gb|ACL40519.1| Substrate-binding region of ABC-type glycine betaine transport system [Arthrobacter chlorophenolicus A6] Length=320 Score = 225 bits (573), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 128/316 (41%), Positives = 184/316 (59%), Gaps = 10/316 (3%) Query 2 RMLRRLRRATVAAAVWLATVCLVASCA-NADPLGSA-------TGSVKSIVVGSGDFPES 53 R L RR+ A L +++C ++DPL +A +G S+ VGS DFPES Sbjct 5 RPLNLGRRSFGGLAAGLGLAVALSACGGSSDPLSNAPSSNAGSSGGATSLTVGSADFPES 64 Query 54 QVIAEIYAQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVT 113 Q+IAE+YA L A G + IGSRE Y A++D S+D+VP+Y GNLLLY +AT Sbjct 65 QIIAELYAGALNAAGVTATTKPNIGSREVYFKAVQDGSVDVVPDYTGNLLLYVDKEATQV 124 Query 114 MLDAVELELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAA 173 D + L +L L++ S A D D + VT ATA ++ LK+I DLA +++ A Sbjct 125 SADDIYKALPDKLADGLAVAEASKAEDKDAMVVTKATAEKYQLKSIEDLAKVCSEIVVGA 184 Query 174 PSAFQTRPSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIP 233 P+ F R GLPGL+ Y+ + P +DGGG VT++AL+E A++++T+ +I Sbjct 185 PATFAERAYGLPGLKKNYNCE--PKKLEPFSDGGGPVTLKALLEDQVQVADIYTTTPSIA 242 Query 234 QNHLVVLEDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSG 293 N LVVLEDP++NF+A +VPL N + +D K+ L++VS LTT L LN AVSG+ Sbjct 243 DNDLVVLEDPKNNFIAQQVVPLYNEKNMTDKAKEALNSVSRILTTDDLINLNRAVSGSQK 302 Query 294 VDPDQAARKWVRDNGF 309 + AA W++D G Sbjct 303 QNAKDAAAAWLKDKGI 318 >gi|300744243|ref|ZP_07073262.1| glycine betaine/choline-binding protein of an ABC-type transport system [Rothia dentocariosa M567] gi|300379968|gb|EFJ76532.1| glycine betaine/choline-binding protein of an ABC-type transport system [Rothia dentocariosa M567] Length=306 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 122/304 (41%), Positives = 181/304 (60%), Gaps = 7/304 (2%) Query 8 RRATVAAAVWLATVCLVASC--ANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQ 65 RR T+ L T+ ++++C + + G G I+VGS F ESQ++AEIY+Q L Sbjct 7 RRQTLGVVGALGTLGVLSACGLSGENVFG---GEHDGIIVGSAAFAESQILAEIYSQALN 63 Query 66 ANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKR 125 NGF +LGIG+RE Y+ AL +ID++PEY GNLLLY ++T + L Sbjct 64 KNGFKSSTQLGIGAREAYLGALTSGAIDVIPEYSGNLLLYLDENSTAQTKQEILQALGGV 123 Query 126 LPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLP 185 L +L L S A + DT+ VT TA ++NL+T+ DLA ++K A F R G+P Sbjct 124 LQDNLKALDASQAENKDTLVVTQQTAQKYNLRTLDDLAKVCTELKIGAAPEFAERAYGIP 183 Query 186 GLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEH 245 GL+ KY P FV++ DGGGA+TV+AL + T +L+ST+ AI QN+ V+LEDP++ Sbjct 184 GLKDKYG--CVPAEFVSLADGGGALTVKALQDNTVQVVDLYSTTPAITQNNFVMLEDPKN 241 Query 246 NFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVR 305 A ++P++N+++ + + VL+ +SA LTT L LN VSG+ +DP AA W++ Sbjct 242 MIPAQQVLPIINTKRVPEDAQAVLNRISAVLTTDDLRSLNDEVSGDKKLDPSTAAANWLK 301 Query 306 DNGF 309 D G Sbjct 302 DKGM 305 >gi|163839894|ref|YP_001624299.1| glycine betaine-binding protein [Renibacterium salmoninarum ATCC 33209] gi|162953370|gb|ABY22885.1| Glycine betaine-binding protein [Renibacterium salmoninarum ATCC 33209] Length=329 Score = 218 bits (556), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 133/296 (45%), Positives = 174/296 (59%), Gaps = 18/296 (6%) Query 28 ANADPLGSATGSVKS-----IVVGSGDFPESQVIAEIYAQVLQANGFDVGRRLGIGSRET 82 N+ PL + + S KS + VGS DFPESQVIA+IYA L+A G V +LGIGSRE Sbjct 36 GNSGPLNNGSNSDKSGAAGTVTVGSADFPESQVIAQIYAGALEAAGVTVNTKLGIGSREI 95 Query 83 YILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPG---------DLSIL 133 YI AL D SI+L+P+Y GNLL Y P T+T + L +L L+IL Sbjct 96 YIKALDDGSINLIPDYTGNLLGYVDPQNTLTDKGDIVKALPDKLAAFADKQTNKTKLAIL 155 Query 134 TPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSL 193 + A D D + VT ATAA++ LK+I DLA + A P F+TRP GLPGL+ KY Sbjct 156 DAAAAEDKDAMVVTKATAAKYELKSIEDLAKVCDKLTLAGPPEFETRPYGLPGLKDKY-- 213 Query 194 DIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAGNIV 253 + P F I G A+TV+AL+ A++F+TS AIP N L VL DP++N+LA +V Sbjct 214 NCVPSKFTPIT--GEALTVKALINDDVQVADIFTTSPAIPTNSLTVLTDPKNNWLAQQVV 271 Query 254 PLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDNGF 309 PL K SD K L+ VS +LTT L LN AVSG+ +P A ++W++D G Sbjct 272 PLYAVGKLSDAAKQALNNVSKQLTTDDLISLNGAVSGDKKQNPKDAGQQWLKDKGI 327 >gi|237785024|ref|YP_002905729.1| ABC transporter substrate-binding protein [Corynebacterium kroppenstedtii DSM 44385] gi|237757936|gb|ACR17186.1| ABC-type transport system, substrate-binding protein [Corynebacterium kroppenstedtii DSM 44385] Length=355 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/325 (40%), Positives = 186/325 (58%), Gaps = 28/325 (8%) Query 2 RMLRRLRRATVAAAVWLATVCLV----ASCANADPLGSATGSVKSIVVGSGDFPESQVIA 57 R R R T+ AA+ T CL+ +SCA ++PL S + +IV+GS D+ +++IA Sbjct 33 RSQSRSRSFTIIAAI--ITSCLLILTLSSCARSNPLSSGSADSDTIVIGSQDYYSNEIIA 90 Query 58 EIYAQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDAT------ 111 EIYAQ L+ N V R+ IG RE YI ++ SIDL+PEY GNLL YF+ +++ Sbjct 91 EIYAQALEKNHIKVDRQFRIGQREVYIPEIEHQSIDLIPEYSGNLLQYFEKESSHGDNDN 150 Query 112 ---VTMLDAVELELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSAD 168 D V +L P L +L SPASD DT TVT A R++L ++ DLA Sbjct 151 ATAAKDPDDVYRDLVHATPQGLHLLNYSPASDQDTYTVTHDFARRYHLHSVGDLARVPGS 210 Query 169 VKFAAPSAFQTRPSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFST 228 VK+ PS ++RP G GL+ YS+D+ +F I D GG +TV+AL +G AN+FS Sbjct 211 VKYGGPSEAESRPYGPTGLKAVYSVDV---DFTPIEDSGGPLTVKALTDGKIQVANIFSA 267 Query 229 SAAIPQNHLVVLEDPEHNFLAGNIVPLVNSRK---KSDHLKDVLDAVSAKLTTAGLAELN 285 AI +N+L VL+DP+H L N+VPL + + K +D+++++S K+TT LAELN Sbjct 268 DPAIKKNNLTVLDDPQHLLLPSNVVPLASKKLNNFKDGKAEDIINSISKKMTTEDLAELN 327 Query 286 AAVSGNSGVDPDQAAR---KWVRDN 307 S D +AAR +W+ N Sbjct 328 ----NESVTDQKRAARIAKEWLAHN 348 >gi|258651637|ref|YP_003200793.1| glycine betaine ABC transporter substrate-binding protein [Nakamurella multipartita DSM 44233] gi|258554862|gb|ACV77804.1| Substrate-binding region of ABC-type glycine betaine transport system [Nakamurella multipartita DSM 44233] Length=324 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 127/265 (48%), Positives = 159/265 (60%), Gaps = 4/265 (1%) Query 43 IVVGSGDFPESQVIAEIYAQVLQANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNL 102 IVVGS +FPES ++A IYA L G D L IGSRE YI A++D SIDLVPEY G L Sbjct 62 IVVGSANFPESALLANIYAAALTKAGLDASTNLNIGSREVYIKAIQDGSIDLVPEYSGVL 121 Query 103 LLYFQPDATVTMLDAVELELYKRLPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADL 162 L YF P AT D V L K P L +L S A D D V VT ATA NL +IADL Sbjct 122 LQYFDPTATAVSADDVYAALVKATPQGLVVLEKSAAEDKDAVVVTKATAEANNLTSIADL 181 Query 163 APHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATA 222 AP ++ PS ++TRP+G+PGL+ KY L F + D GG +T+ AL+ A Sbjct 182 APVASTFILGGPSEWETRPTGVPGLKEKYGLTFK--EFKAL-DAGGPLTLNALLSDQVQA 238 Query 223 ANLFSTSAAIPQNHLVVLEDPEHNFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLA 282 NLF+T AIP N LVVLEDP++ F A N++PL+ S + + + L+AVSAKL TA L Sbjct 239 GNLFTTDPAIPANDLVVLEDPKNLFAAQNVLPLIRSDANNAQVTEALNAVSAKLDTATLT 298 Query 283 ELNAAVSGNSGVDPDQAARKWVRDN 307 EL V+ + D Q A++WV N Sbjct 299 ELLTKVAVDKQ-DSAQVAQEWVAQN 322 >gi|311112854|ref|YP_003984076.1| glycine betaine/choline ABC transporter substrate-binding protein [Rothia dentocariosa ATCC 17931] gi|310944348|gb|ADP40642.1| glycine betaine/choline ABC superfamily ATP binding cassette transporter, substrate-binding protein [Rothia dentocariosa ATCC 17931] Length=335 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 119/304 (40%), Positives = 176/304 (58%), Gaps = 7/304 (2%) Query 8 RRATVAAAVWLATVCLVASC--ANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQ 65 RR + L T+ +++C + + G G I+VGS F ESQ++AEIY+Q L Sbjct 36 RRRALGVVGALGTLGALSACGLSGENVFG---GEHDGIIVGSAAFAESQILAEIYSQALN 92 Query 66 ANGFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKR 125 NGF +LGIG+RE Y+ AL +ID+VPEY GNLLLY ++ + L Sbjct 93 KNGFKSSTQLGIGAREAYLGALTSGAIDVVPEYSGNLLLYLDENSKAQTKQEILQALGGV 152 Query 126 LPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLP 185 L +L L S A + DT+ VT TA ++NL T+ D+A ++K A F R G+P Sbjct 153 LDKNLKALDASQAENKDTLVVTQQTAQKYNLHTLDDMAKVCTELKIGAAPEFAERAYGIP 212 Query 186 GLRHKYSLDIAPGNFVTINDGGGAVTVRALVEGTATAANLFSTSAAIPQNHLVVLEDPEH 245 GL+ KY P FV++ DGGGA+TV+AL + T +L+ST+ AI QN+ V+LEDP++ Sbjct 213 GLKDKYG--CVPAEFVSLADGGGALTVKALQDNTVQVVDLYSTTPAITQNNFVMLEDPKN 270 Query 246 NFLAGNIVPLVNSRKKSDHLKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVR 305 A ++P++N+++ + + VL+ +SA LTT L LN VSG+ +DP AA W++ Sbjct 271 MIPAQQVLPIINTKRVPEDAQAVLNRISAVLTTDDLRSLNDEVSGDKKLDPSTAAANWLK 330 Query 306 DNGF 309 G Sbjct 331 GKGL 334 Lambda K H 0.317 0.132 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 546119936736 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40