BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3760 Length=100 Score E Sequences producing significant alignments: (Bits) Value gi|15843380|ref|NP_338417.1| hypothetical protein MT3867 [Mycoba... 192 2e-47 gi|15610896|ref|NP_218277.1| hypothetical protein Rv3760 [Mycoba... 189 1e-46 gi|167970921|ref|ZP_02553198.1| hypothetical protein MtubH3_2389... 181 3e-44 gi|183985271|ref|YP_001853562.1| hypothetical protein MMAR_5303 ... 150 8e-35 gi|118619517|ref|YP_907849.1| hypothetical protein MUL_4378 [Myc... 150 9e-35 gi|118471520|ref|YP_890553.1| hypothetical protein MSMEG_6336 [M... 125 2e-27 gi|342860005|ref|ZP_08716657.1| hypothetical protein MCOL_14035 ... 111 4e-23 gi|254822453|ref|ZP_05227454.1| hypothetical protein MintA_21141... 107 5e-22 gi|118464102|ref|YP_879604.1| hypothetical protein MAV_0315 [Myc... 105 2e-21 gi|108801931|ref|YP_642128.1| hypothetical protein Mmcs_4968 [My... 101 4e-20 gi|15828276|ref|NP_302539.1| hypothetical protein ML2366 [Mycoba... 100 5e-20 gi|240168519|ref|ZP_04747178.1| hypothetical protein MkanA1_0435... 100 5e-20 gi|296166878|ref|ZP_06849295.1| conserved hypothetical protein [... 97.8 4e-19 gi|120406544|ref|YP_956373.1| hypothetical protein Mvan_5602 [My... 95.9 2e-18 gi|315446465|ref|YP_004079344.1| integral membrane protein [Myco... 94.4 5e-18 gi|333992677|ref|YP_004525291.1| hypothetical protein JDM601_403... 94.4 6e-18 gi|145221798|ref|YP_001132476.1| hypothetical protein Mflv_1206 ... 94.0 6e-18 gi|296139392|ref|YP_003646635.1| hypothetical protein Tpau_1677 ... 80.1 1e-13 gi|296171229|ref|ZP_06852633.1| conserved hypothetical protein [... 78.2 4e-13 gi|54026097|ref|YP_120339.1| hypothetical protein nfa41260 [Noca... 78.2 4e-13 gi|308179159|ref|YP_003918565.1| hypothetical protein AARI_34070... 76.6 1e-12 gi|319948053|ref|ZP_08022227.1| hypothetical protein ES5_01939 [... 75.9 2e-12 gi|343926732|ref|ZP_08766229.1| hypothetical protein GOALK_068_0... 75.9 2e-12 gi|116670967|ref|YP_831900.1| hypothetical protein Arth_2421 [Ar... 75.5 2e-12 gi|227504804|ref|ZP_03934853.1| conserved hypothetical protein [... 72.0 3e-11 gi|302530654|ref|ZP_07282996.1| predicted protein [Streptomyces ... 71.2 5e-11 gi|325001027|ref|ZP_08122139.1| putative signal peptide [Pseudon... 70.5 8e-11 gi|325673451|ref|ZP_08153142.1| hypothetical protein HMPREF0724_... 70.5 9e-11 gi|312139244|ref|YP_004006580.1| integral membrane protein [Rhod... 70.1 1e-10 gi|255325235|ref|ZP_05366341.1| conserved hypothetical protein [... 69.3 2e-10 gi|326382904|ref|ZP_08204594.1| hypothetical protein SCNU_08193 ... 68.9 2e-10 gi|305681081|ref|ZP_07403888.1| conserved hypothetical protein [... 68.9 2e-10 gi|225021119|ref|ZP_03710311.1| hypothetical protein CORMATOL_01... 68.9 3e-10 gi|256396297|ref|YP_003117861.1| hypothetical protein Caci_7191 ... 68.2 4e-10 gi|269954965|ref|YP_003324754.1| hypothetical protein Xcel_0157 ... 66.2 1e-09 gi|169627362|ref|YP_001701011.1| hypothetical protein MAB_0257c ... 66.2 1e-09 gi|260907169|ref|ZP_05915491.1| hypothetical protein BlinB_17676... 65.5 3e-09 gi|226366028|ref|YP_002783811.1| hypothetical protein ROP_66190 ... 63.9 7e-09 gi|226306036|ref|YP_002765996.1| hypothetical protein RER_25490 ... 63.5 1e-08 gi|111023544|ref|YP_706516.1| hypothetical protein RHA1_ro06585 ... 63.2 1e-08 gi|172040503|ref|YP_001800217.1| hypothetical protein cur_0823 [... 62.8 2e-08 gi|229491422|ref|ZP_04385246.1| conserved hypothetical protein [... 62.4 2e-08 gi|296392654|ref|YP_003657538.1| hypothetical protein Srot_0218 ... 62.0 3e-08 gi|300790410|ref|YP_003770701.1| hypothetical protein AMED_8604 ... 62.0 3e-08 gi|38234082|ref|NP_939849.1| hypothetical protein DIP1503 [Coryn... 60.5 7e-08 gi|336321996|ref|YP_004601964.1| hypothetical protein Celgi_2903... 60.1 1e-07 gi|257067982|ref|YP_003154237.1| integral membrane protein [Brac... 59.3 2e-07 gi|213964409|ref|ZP_03392609.1| conserved hypothetical protein [... 58.2 4e-07 gi|334564461|ref|ZP_08517452.1| hypothetical protein CbovD2_0778... 58.2 5e-07 gi|336325815|ref|YP_004605781.1| hypothetical protein CRES_1262 ... 57.8 5e-07 >gi|15843380|ref|NP_338417.1| hypothetical protein MT3867 [Mycobacterium tuberculosis CDC1551] gi|148824965|ref|YP_001289719.1| hypothetical protein TBFG_13792 [Mycobacterium tuberculosis F11] gi|253800807|ref|YP_003033808.1| hypothetical protein TBMG_03805 [Mycobacterium tuberculosis KZN 1435] 38 more sequence titles Length=117 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 100/100 (100%), Positives = 100/100 (100%), Gaps = 0/100 (0%) Query 1 VPGSVPGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLP 60 VPGSVPGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLP Sbjct 18 VPGSVPGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLP 77 Query 61 LGVAILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR 100 LGVAILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR Sbjct 78 LGVAILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR 117 >gi|15610896|ref|NP_218277.1| hypothetical protein Rv3760 [Mycobacterium tuberculosis H37Rv] gi|31794930|ref|NP_857423.1| hypothetical protein Mb3786 [Mycobacterium bovis AF2122/97] gi|121639674|ref|YP_979898.1| hypothetical protein BCG_3819 [Mycobacterium bovis BCG str. Pasteur 1173P2] 36 more sequence titles Length=100 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 99/100 (99%), Positives = 100/100 (100%), Gaps = 0/100 (0%) Query 1 VPGSVPGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLP 60 +PGSVPGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLP Sbjct 1 MPGSVPGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLP 60 Query 61 LGVAILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR 100 LGVAILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR Sbjct 61 LGVAILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR 100 >gi|167970921|ref|ZP_02553198.1| hypothetical protein MtubH3_23890 [Mycobacterium tuberculosis H37Ra] Length=96 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 95/96 (99%), Positives = 96/96 (100%), Gaps = 0/96 (0%) Query 5 VPGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVA 64 +PGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVA Sbjct 1 MPGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVA 60 Query 65 ILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR 100 ILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR Sbjct 61 ILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR 96 >gi|183985271|ref|YP_001853562.1| hypothetical protein MMAR_5303 [Mycobacterium marinum M] gi|183178597|gb|ACC43707.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=125 Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 76/100 (76%), Positives = 84/100 (84%), Gaps = 0/100 (0%) Query 1 VPGSVPGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLP 60 P P + EPP+KFTRAAA+WS+LI GFL+LI+LLIFIAQNTAS FAFFGW WSLP Sbjct 20 TPAPKPSPSSGEPPIKFTRAAALWSSLITGFLVLIVLLIFIAQNTASTAFAFFGWHWSLP 79 Query 61 LGVAILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR 100 LGVAILLAAVGGGL+TV GTARILQLRR AKK+HA ALR Sbjct 80 LGVAILLAAVGGGLLTVAVGTARILQLRREAKKSHAQALR 119 >gi|118619517|ref|YP_907849.1| hypothetical protein MUL_4378 [Mycobacterium ulcerans Agy99] gi|118571627|gb|ABL06378.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=125 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 76/100 (76%), Positives = 84/100 (84%), Gaps = 0/100 (0%) Query 1 VPGSVPGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLP 60 P P + EPP+KFTRAAA+WS+LI GFL+LI+LLIFIAQNTAS FAFFGW WSLP Sbjct 20 TPAPKPAPSSGEPPIKFTRAAALWSSLITGFLVLIVLLIFIAQNTASTAFAFFGWHWSLP 79 Query 61 LGVAILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR 100 LGVAILLAAVGGGL+TV GTARILQLRR AKK+HA ALR Sbjct 80 LGVAILLAAVGGGLLTVAVGTARILQLRREAKKSHAQALR 119 >gi|118471520|ref|YP_890553.1| hypothetical protein MSMEG_6336 [Mycobacterium smegmatis str. MC2 155] gi|118172807|gb|ABK73703.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=121 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 67/89 (76%), Positives = 75/89 (85%), Gaps = 2/89 (2%) Query 12 EPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVG 71 EP K TRA A+W+ALI+GFL+LI+LLIFIAQNT SA+FAF GW WSLPLGVAIL AAV Sbjct 34 EP--KLTRAGALWTALIMGFLVLIVLLIFIAQNTTSAEFAFLGWHWSLPLGVAILGAAVA 91 Query 72 GGLITVFAGTARILQLRRAAKKTHAAALR 100 GGL+TV AGTARI QLRRAAKK AA+R Sbjct 92 GGLLTVAAGTARIFQLRRAAKKNLKAAMR 120 >gi|342860005|ref|ZP_08716657.1| hypothetical protein MCOL_14035 [Mycobacterium colombiense CECT 3035] gi|342132383|gb|EGT85612.1| hypothetical protein MCOL_14035 [Mycobacterium colombiense CECT 3035] Length=116 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 68/94 (73%), Positives = 74/94 (79%), Gaps = 0/94 (0%) Query 7 GKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAIL 66 GK +EP + FTRA A+WS+LI GF+ILILLLIFI QNT A F F GW WS P GVAIL Sbjct 23 GKPAKEPAIGFTRAGALWSSLIAGFVILILLLIFITQNTTPADFQFLGWHWSQPKGVAIL 82 Query 67 LAAVGGGLITVFAGTARILQLRRAAKKTHAAALR 100 LAAV GGLITV GTARILQLRRAAK+ HAAA R Sbjct 83 LAAVVGGLITVAVGTARILQLRRAAKRQHAAASR 116 >gi|254822453|ref|ZP_05227454.1| hypothetical protein MintA_21141 [Mycobacterium intracellulare ATCC 13950] Length=116 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 66/98 (68%), Positives = 73/98 (75%), Gaps = 0/98 (0%) Query 3 GSVPGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLG 62 G G + +EP + FTRA A+WS+L GF+ILILLLIFI QNTA F F GW W+LPLG Sbjct 19 GDKTGASTKEPAIGFTRAGALWSSLFAGFVILILLLIFITQNTAPTDFRFLGWHWTLPLG 78 Query 63 VAILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR 100 VAILLAAV GGLITV GTARILQLRR AKK H A R Sbjct 79 VAILLAAVVGGLITVAVGTARILQLRRVAKKHHTAPPR 116 >gi|118464102|ref|YP_879604.1| hypothetical protein MAV_0315 [Mycobacterium avium 104] gi|254773326|ref|ZP_05214842.1| hypothetical protein MaviaA2_01391 [Mycobacterium avium subsp. avium ATCC 25291] gi|118165389|gb|ABK66286.1| conserved hypothetical protein [Mycobacterium avium 104] gi|336460408|gb|EGO39307.1| uncharacterized integral membrane protein [Mycobacterium avium subsp. paratuberculosis S397] Length=116 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/97 (72%), Positives = 74/97 (77%), Gaps = 3/97 (3%) Query 7 GKAP---EEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGV 63 GK P +EP + FTRA A+WS+LI GF+ILILLLIFI QNTA F F G WSLPLGV Sbjct 20 GKTPAPAKEPAIGFTRAGALWSSLIAGFVILILLLIFITQNTAPTAFRFLGLHWSLPLGV 79 Query 64 AILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR 100 AILLAAV GGLITV GTARILQLRR AKK HAA R Sbjct 80 AILLAAVVGGLITVAVGTARILQLRRVAKKQHAAGGR 116 >gi|108801931|ref|YP_642128.1| hypothetical protein Mmcs_4968 [Mycobacterium sp. MCS] gi|119871083|ref|YP_941035.1| hypothetical protein Mkms_5056 [Mycobacterium sp. KMS] gi|126437912|ref|YP_001073603.1| hypothetical protein Mjls_5349 [Mycobacterium sp. JLS] gi|108772350|gb|ABG11072.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119697172|gb|ABL94245.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126237712|gb|ABO01113.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=128 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/103 (68%), Positives = 79/103 (77%), Gaps = 7/103 (6%) Query 5 VPGK---APEEPP----VKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRW 57 VPG A +PP V FTRAAAVW+++IVG LILI+LLIFIAQNT SA AF GWRW Sbjct 26 VPGDYEVADRQPPDLKKVHFTRAAAVWTSVIVGLLILIVLLIFIAQNTESAAMAFLGWRW 85 Query 58 SLPLGVAILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR 100 +LPLGVAILLAAV GGLI AG AR+ QLRRAAKK + AA+R Sbjct 86 NLPLGVAILLAAVCGGLIASLAGAARLFQLRRAAKKNYKAAMR 128 >gi|15828276|ref|NP_302539.1| hypothetical protein ML2366 [Mycobacterium leprae TN] gi|221230753|ref|YP_002504169.1| hypothetical protein MLBr_02366 [Mycobacterium leprae Br4923] gi|699263|gb|AAA63026.1| u1740aj [Mycobacterium leprae] gi|4455667|emb|CAB36637.1| hypothetical protein [Mycobacterium leprae] gi|13093969|emb|CAC31882.1| putative membrane protein [Mycobacterium leprae] gi|219933860|emb|CAR72464.1| putative membrane protein [Mycobacterium leprae Br4923] Length=113 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 67/99 (68%), Positives = 72/99 (73%), Gaps = 0/99 (0%) Query 2 PGSVPGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPL 61 P G P E V TRA A+WSAL GFLILILLLIFIAQNT S F FFGW WSLPL Sbjct 15 PAPAVGLTPGERAVPVTRAGALWSALFAGFLILILLLIFIAQNTTSTPFTFFGWHWSLPL 74 Query 62 GVAILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR 100 GVAI+L+AVGGGL+ V GTARILQLRR KK + AA R Sbjct 75 GVAIMLSAVGGGLLAVAVGTARILQLRRTVKKRYVAAHR 113 >gi|240168519|ref|ZP_04747178.1| hypothetical protein MkanA1_04352 [Mycobacterium kansasii ATCC 12478] Length=100 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 66/90 (74%), Positives = 74/90 (83%), Gaps = 0/90 (0%) Query 11 EEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAV 70 ++P TRA A+WS+LI GFLILILLL+FIAQNTAS F F GW WSLPLGVAILLAAV Sbjct 4 KDPASTLTRAGALWSSLIAGFLILILLLVFIAQNTASTPFTFLGWHWSLPLGVAILLAAV 63 Query 71 GGGLITVFAGTARILQLRRAAKKTHAAALR 100 GGGL+TV GTARI+QLRR AKK+H ALR Sbjct 64 GGGLLTVAVGTARIIQLRRVAKKSHTQALR 93 >gi|296166878|ref|ZP_06849295.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897755|gb|EFG77344.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=122 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/86 (78%), Positives = 72/86 (84%), Gaps = 0/86 (0%) Query 15 VKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGL 74 + FTRA A+WS+LI GFLILILLLIFI QNTA+ F F GW WSLPLGVAILLAAV GGL Sbjct 37 IGFTRAGALWSSLIAGFLILILLLIFITQNTATTAFTFLGWHWSLPLGVAILLAAVVGGL 96 Query 75 ITVFAGTARILQLRRAAKKTHAAALR 100 ITV GTARILQLRRAAKK HAA+ R Sbjct 97 ITVAVGTARILQLRRAAKKHHAASSR 122 >gi|120406544|ref|YP_956373.1| hypothetical protein Mvan_5602 [Mycobacterium vanbaalenii PYR-1] gi|119959362|gb|ABM16367.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=96 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/88 (71%), Positives = 69/88 (79%), Gaps = 3/88 (3%) Query 10 PEEPP---VKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAIL 66 P PP V TRAAA+W+AL +GFLILI+LLIFIAQNT SA+FAF GW WSLPLGVAIL Sbjct 4 PPPPPKSAVHLTRAAALWTALTLGFLILIVLLIFIAQNTESAEFAFLGWHWSLPLGVAIL 63 Query 67 LAAVGGGLITVFAGTARILQLRRAAKKT 94 AAV GGL+TV G R+ QLRRAAKK Sbjct 64 FAAVAGGLLTVAVGAVRMFQLRRAAKKN 91 >gi|315446465|ref|YP_004079344.1| integral membrane protein [Mycobacterium sp. Spyr1] gi|315264768|gb|ADU01510.1| uncharacterized integral membrane protein [Mycobacterium sp. Spyr1] Length=127 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 60/80 (75%), Positives = 65/80 (82%), Gaps = 0/80 (0%) Query 15 VKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGL 74 V TRAAA+W++L GFLILI+LLIFIAQNT SAQFAF GW WSLPLGVAIL AAV GGL Sbjct 43 VHRTRAAAMWASLATGFLILIVLLIFIAQNTESAQFAFLGWHWSLPLGVAILFAAVAGGL 102 Query 75 ITVFAGTARILQLRRAAKKT 94 +TV G RI QLRRAAKK Sbjct 103 LTVAVGAVRIFQLRRAAKKN 122 >gi|333992677|ref|YP_004525291.1| hypothetical protein JDM601_4037 [Mycobacterium sp. JDM601] gi|333488645|gb|AEF38037.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=109 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/81 (72%), Positives = 65/81 (81%), Gaps = 0/81 (0%) Query 17 FTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGLIT 76 FTRA A+WSALI GFL+LI+LL+F+ QNT F W+WSLPLGVAILLAAV GGL+T Sbjct 27 FTRAGALWSALIAGFLVLIVLLVFVTQNTDPVDLRFLAWQWSLPLGVAILLAAVCGGLVT 86 Query 77 VFAGTARILQLRRAAKKTHAA 97 AGTARI QLRRAAKKT AA Sbjct 87 ALAGTARIFQLRRAAKKTLAA 107 >gi|145221798|ref|YP_001132476.1| hypothetical protein Mflv_1206 [Mycobacterium gilvum PYR-GCK] gi|145214284|gb|ABP43688.1| Uncharacterized integral membrane protein-like protein [Mycobacterium gilvum PYR-GCK] Length=127 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 60/80 (75%), Positives = 65/80 (82%), Gaps = 0/80 (0%) Query 15 VKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGL 74 V TRAAA+W++L GFLILI+LLIFIAQNT SAQFAF GW WSLPLGVAIL AAV GGL Sbjct 43 VHRTRAAAMWASLATGFLILIVLLIFIAQNTESAQFAFLGWHWSLPLGVAILFAAVAGGL 102 Query 75 ITVFAGTARILQLRRAAKKT 94 +TV G RI QLRRAAKK Sbjct 103 LTVAVGAVRIFQLRRAAKKN 122 >gi|296139392|ref|YP_003646635.1| hypothetical protein Tpau_1677 [Tsukamurella paurometabola DSM 20162] gi|296027526|gb|ADG78296.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=126 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/79 (52%), Positives = 55/79 (70%), Gaps = 0/79 (0%) Query 15 VKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGL 74 VK TR+A++WS L+ G +IL++LL FI QN + Q W +LPLGV++L+AA+ G L Sbjct 45 VKHTRSASLWSGLVGGAIILLVLLAFIVQNQQNTQIKLLFWEANLPLGVSLLIAAILGAL 104 Query 75 ITVFAGTARILQLRRAAKK 93 + AG RI QLRRAAKK Sbjct 105 VVGSAGGLRIFQLRRAAKK 123 >gi|296171229|ref|ZP_06852633.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894197|gb|EFG73954.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=97 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/88 (56%), Positives = 58/88 (66%), Gaps = 0/88 (0%) Query 6 PGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAI 65 P + E FTR AA W AL+ G +ILI+LLIF+AQNT S F G+ WSLP+GV Sbjct 5 PRGSAEPSSRSFTRLAAAWWALVFGLIILIVLLIFVAQNTESITTHFLGFHWSLPVGVGY 64 Query 66 LLAAVGGGLITVFAGTARILQLRRAAKK 93 LLAAV G T+ G ARI+QLRRA KK Sbjct 65 LLAAVAGATTTLLVGAARIIQLRRATKK 92 >gi|54026097|ref|YP_120339.1| hypothetical protein nfa41260 [Nocardia farcinica IFM 10152] gi|54017605|dbj|BAD58975.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=105 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 37/76 (49%), Positives = 50/76 (66%), Gaps = 0/76 (0%) Query 18 TRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGLITV 77 ++ W L+ G LIL++LLIFI QN + + F W ++LPLGVA+LL+ +GG L+ Sbjct 30 SKTGYTWVGLVAGTLILVVLLIFILQNLDTVEVQLFFWEFNLPLGVAVLLSVIGGALVMA 89 Query 78 FAGTARILQLRRAAKK 93 G RILQLRRAAK Sbjct 90 LVGGVRILQLRRAAKH 105 >gi|308179159|ref|YP_003918565.1| hypothetical protein AARI_34070 [Arthrobacter arilaitensis Re117] gi|307746622|emb|CBT77594.1| hypothetical membrane protein [Arthrobacter arilaitensis Re117] Length=128 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/100 (41%), Positives = 57/100 (57%), Gaps = 3/100 (3%) Query 1 VPGSVPGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLP 60 V S P + P K R +W+A I G ++LILL++FIAQN +F ++ + Sbjct 32 VQQSEPAGTNKLPATKLGR---IWTATIFGLVVLILLIVFIAQNQDQVTLNYFAYQGQVN 88 Query 61 LGVAILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR 100 LG+A+ AAVGG L+ AG AR++QLR AKK A R Sbjct 89 LGLALFFAAVGGALVVAIAGVARVIQLRATAKKRRKANKR 128 >gi|319948053|ref|ZP_08022227.1| hypothetical protein ES5_01939 [Dietzia cinnamea P4] gi|319438292|gb|EFV93238.1| hypothetical protein ES5_01939 [Dietzia cinnamea P4] Length=146 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/79 (51%), Positives = 50/79 (64%), Gaps = 0/79 (0%) Query 22 AVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGLITVFAGT 81 + W L++G L+ +LLLIFIAQNT S + GW +SLPLGV ILLAA+ G LI Sbjct 66 SAWVGLVLGALVTVLLLIFIAQNTTSTDVRYLGWEFSLPLGVLILLAAIAGALIMALFAG 125 Query 82 ARILQLRRAAKKTHAAALR 100 RILQLR A+K + R Sbjct 126 FRILQLRMRARKARKLSAR 144 >gi|343926732|ref|ZP_08766229.1| hypothetical protein GOALK_068_00130 [Gordonia alkanivorans NBRC 16433] gi|343763331|dbj|GAA13155.1| hypothetical protein GOALK_068_00130 [Gordonia alkanivorans NBRC 16433] Length=116 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/79 (47%), Positives = 52/79 (66%), Gaps = 0/79 (0%) Query 15 VKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGL 74 V+ TR A W +++G +IL+LLL+FI QN S + W +LPLGV++L+AA+ G L Sbjct 35 VEHTRTRATWFGVVIGAIILVLLLVFIVQNLESQRIELIFWEVNLPLGVSLLIAAIAGAL 94 Query 75 ITVFAGTARILQLRRAAKK 93 I G R+LQLRRA K+ Sbjct 95 IVAIIGGLRMLQLRRALKR 113 >gi|116670967|ref|YP_831900.1| hypothetical protein Arth_2421 [Arthrobacter sp. FB24] gi|116611076|gb|ABK03800.1| Uncharacterized integral membrane protein-like protein [Arthrobacter sp. FB24] Length=172 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/91 (44%), Positives = 56/91 (62%), Gaps = 2/91 (2%) Query 10 PEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAA 69 PE+ TRA VW A+ +++LL+IFI QN Q +FG ++PLG+A+ +AA Sbjct 82 PED--RHVTRAGMVWVAVATALAVMVLLIIFILQNQDYVQVRYFGLEGAVPLGIALFIAA 139 Query 70 VGGGLITVFAGTARILQLRRAAKKTHAAALR 100 VGGG++ AG ARI+QLR AA + A R Sbjct 140 VGGGVLVAVAGAARIIQLRAAAHRRRVLAQR 170 >gi|227504804|ref|ZP_03934853.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] gi|227198654|gb|EEI78702.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] Length=127 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 36/85 (43%), Positives = 50/85 (59%), Gaps = 0/85 (0%) Query 9 APEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLA 68 + E+ VK + AA+ W ALIVGFL+LI+L++FI QN F W P G+A L+ Sbjct 37 SSEDAKVKGSFAASTWVALIVGFLLLIVLIVFILQNQQKVPMNFLNWSGEFPAGIAYLIF 96 Query 69 AVGGGLITVFAGTARILQLRRAAKK 93 A+ G LI G R+ +LRR +K Sbjct 97 AIAGALIMALVGMWRMFELRRQVRK 121 >gi|302530654|ref|ZP_07282996.1| predicted protein [Streptomyces sp. AA4] gi|302439549|gb|EFL11365.1| predicted protein [Streptomyces sp. AA4] Length=138 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 42/103 (41%), Positives = 56/103 (55%), Gaps = 11/103 (10%) Query 2 PGSVPGKAPEEPP-----------VKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQF 50 PG+ PG P P VK TR + W A+IV ++L LL+FI QN +A Sbjct 34 PGTAPGAEPGPRPSAAKPAGRTGKVKPTRISGTWIAVIVAIVVLAFLLVFILQNLDTATV 93 Query 51 AFFGWRWSLPLGVAILLAAVGGGLITVFAGTARILQLRRAAKK 93 F G SLPL VA+L +A+ G + G ARILQLR+ A++ Sbjct 94 HFLGASGSLPLAVAMLFSAIAGAALVALIGGARILQLRKQARR 136 >gi|325001027|ref|ZP_08122139.1| putative signal peptide [Pseudonocardia sp. P1] Length=167 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 37/80 (47%), Positives = 50/80 (63%), Gaps = 0/80 (0%) Query 15 VKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGL 74 + TR +W+ALI+ ++LI LL+FI QNT F +LP GVA+L AA+ G L Sbjct 88 IPNTRTGGLWAALILSAVVLIFLLVFILQNTEPVVINFLWLTGTLPTGVALLFAAIAGVL 147 Query 75 ITVFAGTARILQLRRAAKKT 94 + GT RILQLRR A++T Sbjct 148 LVAVPGTGRILQLRREARRT 167 >gi|325673451|ref|ZP_08153142.1| hypothetical protein HMPREF0724_10924 [Rhodococcus equi ATCC 33707] gi|325555472|gb|EGD25143.1| hypothetical protein HMPREF0724_10924 [Rhodococcus equi ATCC 33707] Length=158 Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 41/76 (54%), Positives = 53/76 (70%), Gaps = 0/76 (0%) Query 18 TRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGLITV 77 TRAA W+ L+VG ++ ILLLIFI QN S F F W +SLP G+++LLAA+ G LI Sbjct 72 TRAATTWTGLVVGIVVAILLLIFILQNLDSVTFELFAWEFSLPAGISLLLAAIAGALIMA 131 Query 78 FAGTARILQLRRAAKK 93 AG RI+Q+RR AK+ Sbjct 132 LAGGVRIIQIRRVAKR 147 >gi|312139244|ref|YP_004006580.1| integral membrane protein [Rhodococcus equi 103S] gi|311888583|emb|CBH47895.1| putative integral membrane protein [Rhodococcus equi 103S] Length=138 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/76 (54%), Positives = 53/76 (70%), Gaps = 0/76 (0%) Query 18 TRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGLITV 77 TRAA W+ L+VG ++ ILLLIFI QN S F F W +SLP G+++LLAA+ G LI Sbjct 52 TRAATTWTGLVVGIVVAILLLIFILQNLDSVTFELFAWEFSLPAGISLLLAAIAGALIMA 111 Query 78 FAGTARILQLRRAAKK 93 AG RI+Q+RR AK+ Sbjct 112 LAGGVRIIQIRRVAKR 127 >gi|255325235|ref|ZP_05366341.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|311739709|ref|ZP_07713544.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] gi|255297800|gb|EET77111.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|311305525|gb|EFQ81593.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] Length=135 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/74 (46%), Positives = 45/74 (61%), Gaps = 0/74 (0%) Query 20 AAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGLITVFA 79 AA+ W ALIV FL+LI+L++FI QN F GW P G+A L+ A+GG LI Sbjct 57 AASTWIALIVDFLLLIVLIVFIMQNQHEVPMNFLGWSGEFPAGIAFLIFAIGGALIMALV 116 Query 80 GTARILQLRRAAKK 93 G R+ +LRR +K Sbjct 117 GGWRMFELRRQLRK 130 >gi|326382904|ref|ZP_08204594.1| hypothetical protein SCNU_08193 [Gordonia neofelifaecis NRRL B-59395] gi|326198494|gb|EGD55678.1| hypothetical protein SCNU_08193 [Gordonia neofelifaecis NRRL B-59395] Length=136 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/76 (48%), Positives = 49/76 (65%), Gaps = 0/76 (0%) Query 18 TRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGLITV 77 TR A + +VG +I ILL++FI N A+ Q F ++ LP+GV++L+AA+ G LIT Sbjct 56 TRTQATYVGWVVGVIITILLIVFILVNLATVQINFIFFKADLPIGVSLLIAAIAGALITA 115 Query 78 FAGTARILQLRRAAKK 93 G ARI QL RA KK Sbjct 116 LLGGARIFQLNRALKK 131 >gi|305681081|ref|ZP_07403888.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] gi|305659286|gb|EFM48786.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] Length=112 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/88 (41%), Positives = 47/88 (54%), Gaps = 0/88 (0%) Query 8 KAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILL 67 +A + V+ + A W ALI G L+LI+LL+FI QN F W + P G+ LL Sbjct 2 EAKQPSGVQGSFAGGTWIALIAGALLLIMLLVFIMQNQDQVDLVLFAWNFRFPAGIGFLL 61 Query 68 AAVGGGLITVFAGTARILQLRRAAKKTH 95 AA+ G LI G R+ QLRR KT Sbjct 62 AAISGALIMALVGGVRMFQLRRQIIKTD 89 >gi|225021119|ref|ZP_03710311.1| hypothetical protein CORMATOL_01131 [Corynebacterium matruchotii ATCC 33806] gi|224946119|gb|EEG27328.1| hypothetical protein CORMATOL_01131 [Corynebacterium matruchotii ATCC 33806] Length=112 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/88 (41%), Positives = 47/88 (54%), Gaps = 0/88 (0%) Query 8 KAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILL 67 +A + V+ + A W ALI G L+LI+LL+FI QN F W + P G+ LL Sbjct 2 EAKQPSGVQGSFAGGTWIALIAGALLLIMLLVFIMQNQDQVDLVLFAWNFRFPAGIGFLL 61 Query 68 AAVGGGLITVFAGTARILQLRRAAKKTH 95 AA+ G LI G R+ QLRR KT Sbjct 62 AAISGALIMALVGGVRMFQLRRQIIKTD 89 >gi|256396297|ref|YP_003117861.1| hypothetical protein Caci_7191 [Catenulispora acidiphila DSM 44928] gi|256362523|gb|ACU76020.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928] Length=182 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/99 (44%), Positives = 58/99 (59%), Gaps = 2/99 (2%) Query 3 GSVPGKAPEEPPVK-FTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPL 61 G P + P+ PP+ TR +W L G ++L+LLL+FI QN Q +G W+ PL Sbjct 21 GETPTE-PQHPPLPGRTRLGGLWVVLTAGAVVLVLLLVFILQNDQHVQIHLYGAHWNAPL 79 Query 62 GVAILLAAVGGGLITVFAGTARILQLRRAAKKTHAAALR 100 GVA+L+AA G L+ V G RI+QLRRAA+ H R Sbjct 80 GVALLMAAALGVLLVVVPGAGRIIQLRRAARNLHQDRER 118 >gi|269954965|ref|YP_003324754.1| hypothetical protein Xcel_0157 [Xylanimonas cellulosilytica DSM 15894] gi|269303646|gb|ACZ29196.1| hypothetical protein Xcel_0157 [Xylanimonas cellulosilytica DSM 15894] Length=121 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/89 (39%), Positives = 52/89 (59%), Gaps = 6/89 (6%) Query 6 PGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAI 65 PG+ P +RA A+W + V L+L+ L++F+ QNT +F G ++PL +A+ Sbjct 38 PGEVPR------SRAGALWVGICVAALVLVALIVFMLQNTEPVLVSFLGMEGTVPLAIAL 91 Query 66 LLAAVGGGLITVFAGTARILQLRRAAKKT 94 L+A VG G++ + GT RI QLRR T Sbjct 92 LIAGVGVGIVALVIGTVRITQLRRRRHHT 120 >gi|169627362|ref|YP_001701011.1| hypothetical protein MAB_0257c [Mycobacterium abscessus ATCC 19977] gi|169239329|emb|CAM60357.1| Hypothetical protein MAB_0257c [Mycobacterium abscessus] Length=126 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/84 (56%), Positives = 57/84 (68%), Gaps = 0/84 (0%) Query 11 EEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAV 70 +E V TRAAA W+ +I+G LILILLLIFI QN + F W +LPLGV +L+AAV Sbjct 40 KEDAVTRTRAAATWTGVILGLLILILLLIFITQNMNTVTTTFLVWHLNLPLGVTVLIAAV 99 Query 71 GGGLITVFAGTARILQLRRAAKKT 94 G L+T G RI+QLRRAAKK Sbjct 100 AGALLTALVGIVRIVQLRRAAKKN 123 >gi|260907169|ref|ZP_05915491.1| hypothetical protein BlinB_17676 [Brevibacterium linens BL2] Length=162 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/78 (50%), Positives = 53/78 (68%), Gaps = 0/78 (0%) Query 20 AAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGLITVFA 79 +A +W++LI+G I++LLLIFI QN A+F +FGW++ LPLGVA+L AA+GG I Sbjct 82 SAGMWASLILGAAIVVLLLIFILQNNVPAEFQYFGWQFQLPLGVAMLFAAIGGIFIAGII 141 Query 80 GTARILQLRRAAKKTHAA 97 G+ RI L R KK A Sbjct 142 GSVRIFVLNRKLKKISKA 159 >gi|226366028|ref|YP_002783811.1| hypothetical protein ROP_66190 [Rhodococcus opacus B4] gi|226244518|dbj|BAH54866.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=143 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 37/79 (47%), Positives = 53/79 (68%), Gaps = 0/79 (0%) Query 15 VKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGL 74 +K TR A W+ L++G ++L+LLL+FI QN S F W ++LPLGV +L AA+ G + Sbjct 57 IKHTRVGATWTGLVIGIVVLVLLLVFILQNLDSVTLELFAWEFTLPLGVTLLFAAIAGAV 116 Query 75 ITVFAGTARILQLRRAAKK 93 I AG RI+Q+RRAA + Sbjct 117 IMALAGGVRIIQIRRAANR 135 >gi|226306036|ref|YP_002765996.1| hypothetical protein RER_25490 [Rhodococcus erythropolis PR4] gi|226185153|dbj|BAH33257.1| hypothetical protein RER_25490 [Rhodococcus erythropolis PR4] Length=136 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/76 (50%), Positives = 50/76 (66%), Gaps = 0/76 (0%) Query 18 TRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGLITV 77 TRAA W L++G ++LILLL+FI QN S W+ PLG+ ILL+A+ G LI Sbjct 59 TRAATTWVGLVIGAIVLILLLVFILQNLESVSVKILAWQIDFPLGITILLSAIAGALIMA 118 Query 78 FAGTARILQLRRAAKK 93 AG RI+Q+RRAAK+ Sbjct 119 LAGGVRIIQIRRAAKR 134 >gi|111023544|ref|YP_706516.1| hypothetical protein RHA1_ro06585 [Rhodococcus jostii RHA1] gi|110823074|gb|ABG98358.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=143 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/79 (47%), Positives = 53/79 (68%), Gaps = 0/79 (0%) Query 15 VKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGL 74 +K TR A W+ L++G ++L+LLL+FI QN S F W ++LPLGV +L AA+ G + Sbjct 57 IKHTRVGATWTGLVIGIVVLVLLLVFILQNLDSVTLEMFVWEFTLPLGVTLLFAAIAGAV 116 Query 75 ITVFAGTARILQLRRAAKK 93 I AG RI+Q+RRAA + Sbjct 117 IMALAGGVRIIQIRRAANR 135 >gi|172040503|ref|YP_001800217.1| hypothetical protein cur_0823 [Corynebacterium urealyticum DSM 7109] gi|171851807|emb|CAQ04783.1| hypothetical protein cu0823 [Corynebacterium urealyticum DSM 7109] Length=147 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/95 (49%), Positives = 60/95 (64%), Gaps = 1/95 (1%) Query 2 PGSVPGKAPE-EPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLP 60 P S PG+ VK + A + W+ALI+G L+LILLLIFI QN AQ FFGW WS P Sbjct 52 PASQPGQQKRAHQNVKGSVAGSTWAALIIGALLLILLLIFILQNQTEAQLVFFGWEWSFP 111 Query 61 LGVAILLAAVGGGLITVFAGTARILQLRRAAKKTH 95 +G+ +L+AA+ G LI G R+ QLRR K+ + Sbjct 112 IGIGMLIAAIAGALIMAMVGIVRMTQLRRQIKRGY 146 >gi|229491422|ref|ZP_04385246.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229321707|gb|EEN87504.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=124 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/76 (50%), Positives = 50/76 (66%), Gaps = 0/76 (0%) Query 18 TRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGLITV 77 TRAA W L++G ++LILLL+FI QN S W+ PLG+ ILL+A+ G LI Sbjct 47 TRAATTWVGLVIGAIVLILLLVFILQNLESVSVKILAWQIDFPLGITILLSAIAGALIMA 106 Query 78 FAGTARILQLRRAAKK 93 AG RI+Q+RRAAK+ Sbjct 107 LAGGVRIIQIRRAAKR 122 >gi|296392654|ref|YP_003657538.1| hypothetical protein Srot_0218 [Segniliparus rotundus DSM 44985] gi|296179801|gb|ADG96707.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length=145 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/83 (52%), Positives = 54/83 (66%), Gaps = 0/83 (0%) Query 15 VKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGL 74 VK TR A W+A+I G L+LI+LLIFI QN + F W SLPLGV +L AA+ G L Sbjct 63 VKHTRTGATWTAIIFGTLLLIVLLIFIVQNGEPTKVVFLSWDVSLPLGVLMLAAAIIGVL 122 Query 75 ITVFAGTARILQLRRAAKKTHAA 97 T G AR+ Q+ RAA+K+H A Sbjct 123 GTALVGAARMFQVWRAARKSHKA 145 >gi|300790410|ref|YP_003770701.1| hypothetical protein AMED_8604 [Amycolatopsis mediterranei U32] gi|299799924|gb|ADJ50299.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340532094|gb|AEK47299.1| hypothetical protein RAM_44160 [Amycolatopsis mediterranei S699] Length=145 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/78 (45%), Positives = 52/78 (67%), Gaps = 0/78 (0%) Query 16 KFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILLAAVGGGLI 75 + TR + W A+I G ++L++LL+FI QN A FFG SLPL +A+L +A+GG ++ Sbjct 67 RPTRISGTWVAVIAGLVVLVVLLVFILQNLDPATVHFFGAEGSLPLAIAMLFSAIGGAVL 126 Query 76 TVFAGTARILQLRRAAKK 93 G ARILQLR+ A++ Sbjct 127 VALIGGARILQLRKQARR 144 >gi|38234082|ref|NP_939849.1| hypothetical protein DIP1503 [Corynebacterium diphtheriae NCTC 13129] gi|38200344|emb|CAE50030.1| Putative membrane protein [Corynebacterium diphtheriae] Length=127 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/92 (47%), Positives = 57/92 (62%), Gaps = 2/92 (2%) Query 4 SVPGKAPE--EPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPL 61 SVP + P+ +P VK + A W ALIVG L+LI+LLIFI QN + + FF ++++P Sbjct 31 SVPAEIPQTTKPEVKSSFAGGTWFALIVGALLLIVLLIFILQNQQAVELNFFTLQFTVPA 90 Query 62 GVAILLAAVGGGLITVFAGTARILQLRRAAKK 93 GV LLAA+ G LI G R+ QLRR K Sbjct 91 GVGFLLAAIFGALIMAMVGVVRMFQLRRQIKN 122 >gi|336321996|ref|YP_004601964.1| hypothetical protein Celgi_2903 [Cellvibrio gilvus ATCC 13127] gi|336105577|gb|AEI13396.1| hypothetical protein Celgi_2903 [Cellvibrio gilvus ATCC 13127] Length=129 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/99 (40%), Positives = 58/99 (59%), Gaps = 2/99 (2%) Query 2 PGSVPGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPL 61 P V +P + PV+ +R A W + VG L+LI L++F+ QNT + F G S PL Sbjct 29 PSKVANGSPTDRPVR-SRTGAAWVGVCVGVLVLIALVVFMMQNTTPVEVTFLGMSGSAPL 87 Query 62 GVAILLAAVGGGLITVFAGTARILQLRRAAKKT-HAAAL 99 + +L+A +G GLI + G+ RI QLRR + HAA++ Sbjct 88 ALVLLIAGIGVGLIALVIGSLRIGQLRRRIRSDRHAASV 126 >gi|257067982|ref|YP_003154237.1| integral membrane protein [Brachybacterium faecium DSM 4810] gi|256558800|gb|ACU84647.1| uncharacterized integral membrane protein [Brachybacterium faecium DSM 4810] Length=152 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/101 (41%), Positives = 62/101 (62%), Gaps = 7/101 (6%) Query 2 PGSVPGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPL 61 PG+ A E P + A +W +LI+G ++L+LLLIF+ QNTA+A FA+F + + L Sbjct 48 PGTERRPAAETPEAGGRKTAGLWLSLILGAIVLVLLLIFVLQNTATAHFAYFAAEFDMQL 107 Query 62 GVAILLAAVGGGLITVFAGTARILQ-------LRRAAKKTH 95 GVA+LLAA+ G L+ G+ R++Q LR+ +K H Sbjct 108 GVAMLLAAIAGALVMALVGSVRMVQMSWTIRKLRKQQEKIH 148 >gi|213964409|ref|ZP_03392609.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] gi|213952602|gb|EEB63984.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] Length=142 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/88 (43%), Positives = 51/88 (58%), Gaps = 0/88 (0%) Query 6 PGKAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAI 65 P AP VK T A ++W L++ ++LI+LL+FI QN FGW W+ P+GV + Sbjct 52 PAPAPGRRKVKKTTAGSMWVGLVISAVLLIVLLVFILQNQQETALNLFGWTWNFPVGVGM 111 Query 66 LLAAVGGGLITVFAGTARILQLRRAAKK 93 L AA+ G LIT G R+ LRR +K Sbjct 112 LFAAILGALITALIGGWRMFDLRRQIRK 139 >gi|334564461|ref|ZP_08517452.1| hypothetical protein CbovD2_07787 [Corynebacterium bovis DSM 20582] Length=104 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/91 (49%), Positives = 56/91 (62%), Gaps = 2/91 (2%) Query 9 APEE--PPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAIL 66 AP+ P V+ + A A W LI+G L+LILLL+FI QN S F W W+ P+GV +L Sbjct 14 APDSTTPRVRGSVAGATWVGLIIGALLLILLLVFILQNQDSVAVHFLAWTWTFPVGVGML 73 Query 67 LAAVGGGLITVFAGTARILQLRRAAKKTHAA 97 +AAV G LI G R+LQLRR +TH A Sbjct 74 IAAVAGALIMACVGVVRMLQLRRQVAETHRA 104 >gi|336325815|ref|YP_004605781.1| hypothetical protein CRES_1262 [Corynebacterium resistens DSM 45100] gi|336101797|gb|AEI09617.1| hypothetical protein CRES_1262 [Corynebacterium resistens DSM 45100] Length=134 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/87 (46%), Positives = 50/87 (58%), Gaps = 0/87 (0%) Query 8 KAPEEPPVKFTRAAAVWSALIVGFLILILLLIFIAQNTASAQFAFFGWRWSLPLGVAILL 67 + E VK + A W LI+G L+LI+LL FI QN FGW LP+GV +LL Sbjct 48 DSDRERKVKGSAAGGTWIGLIIGVLLLIVLLTFILQNQEKFDLHVFGWVLQLPIGVGMLL 107 Query 68 AAVGGGLITVFAGTARILQLRRAAKKT 94 +A+ G LI G RILQLRR K+T Sbjct 108 SAILGALIMALVGGVRILQLRRQVKRT 134 Lambda K H 0.328 0.140 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129239199826 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40