BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3765c
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
gi|254366310|ref|ZP_04982354.1| hypothetical two component trans... 469 1e-130
gi|308232561|ref|ZP_07664116.1| two component system transcripti... 469 2e-130
gi|15610901|ref|NP_218282.1| two component transcriptional regul... 468 2e-130
gi|289556030|ref|ZP_06445240.1| two component system transcripti... 468 3e-130
gi|15843385|ref|NP_338422.1| DNA-binding response regulator [Myc... 467 7e-130
gi|41406357|ref|NP_959193.1| hypothetical protein MAP0259 [Mycob... 422 1e-116
gi|183985285|ref|YP_001853576.1| two-component transcriptional r... 422 2e-116
gi|254773313|ref|ZP_05214829.1| DNA-binding response regulator [... 422 2e-116
gi|254822466|ref|ZP_05227467.1| DNA-binding response regulator [... 421 5e-116
gi|342860017|ref|ZP_08716669.1| DNA-binding response regulator [... 421 5e-116
gi|296166889|ref|ZP_06849306.1| DNA-binding response regulator [... 419 2e-115
gi|336460748|gb|EGO39636.1| response regulator with CheY-like re... 417 9e-115
gi|118619527|ref|YP_907859.1| two component transcriptional regu... 417 9e-115
gi|240168529|ref|ZP_04747188.1| two-component transcriptional re... 403 1e-110
gi|118470471|ref|YP_889241.1| DNA-binding response regulator [My... 390 8e-107
gi|120405382|ref|YP_955211.1| two component transcriptional regu... 385 3e-105
gi|108800890|ref|YP_641087.1| two component transcriptional regu... 380 6e-104
gi|333992682|ref|YP_004525296.1| two-component transcriptional r... 377 1e-102
gi|145222854|ref|YP_001133532.1| two component transcriptional r... 373 1e-101
gi|331698780|ref|YP_004335019.1| winged helix family two compone... 348 4e-94
gi|297200795|ref|ZP_06918192.1| phosphate regulon transcriptiona... 344 5e-93
gi|302552564|ref|ZP_07304906.1| phosphate regulon transcriptiona... 343 1e-92
gi|29830741|ref|NP_825375.1| two-component system response regul... 343 1e-92
gi|324999382|ref|ZP_08120494.1| two component transcriptional re... 343 2e-92
gi|296394075|ref|YP_003658959.1| transcriptional regulator [Segn... 343 2e-92
gi|302544103|ref|ZP_07296445.1| DNA-binding response regulator T... 342 2e-92
gi|294630229|ref|ZP_06708789.1| DNA-binding response regulator T... 341 5e-92
gi|290959131|ref|YP_003490313.1| two component system response r... 341 5e-92
gi|145594662|ref|YP_001158959.1| response regulator receiver [Sa... 341 6e-92
gi|297625540|ref|YP_003687303.1| two component system response r... 340 8e-92
gi|302559780|ref|ZP_07312122.1| DNA-binding response regulator T... 340 9e-92
gi|21222423|ref|NP_628202.1| two component system response regul... 340 1e-91
gi|289770395|ref|ZP_06529773.1| two component system response re... 340 1e-91
gi|119717917|ref|YP_924882.1| response regulator receiver [Nocar... 340 1e-91
gi|269796544|ref|YP_003315999.1| CheY-like receiver domain/winge... 339 2e-91
gi|302867311|ref|YP_003835948.1| response regulator receiver [Mi... 338 3e-91
gi|300790732|ref|YP_003771023.1| two-component system response r... 338 3e-91
gi|291438629|ref|ZP_06578019.1| two-component system response re... 338 4e-91
gi|340532422|gb|AEK47627.1| two-component system response regula... 338 4e-91
gi|345016321|ref|YP_004818675.1| winged helix family two compone... 338 5e-91
gi|336116252|ref|YP_004571018.1| two-component system response r... 338 5e-91
gi|330468634|ref|YP_004406377.1| two component transcriptional r... 338 5e-91
gi|297193412|ref|ZP_06910810.1| two-component system response re... 337 6e-91
gi|111220170|ref|YP_710964.1| putative two-component system resp... 337 6e-91
gi|326333582|ref|ZP_08199821.1| DNA-binding response regulator T... 337 7e-91
gi|345000963|ref|YP_004803817.1| winged helix family two compone... 337 9e-91
gi|297158650|gb|ADI08362.1| two-component system response regula... 337 1e-90
gi|159037874|ref|YP_001537127.1| two component transcriptional r... 337 1e-90
gi|329938744|ref|ZP_08288140.1| two component system response re... 337 1e-90
gi|328883819|emb|CCA57058.1| putative two-component system respo... 337 1e-90
>gi|254366310|ref|ZP_04982354.1| hypothetical two component transcriptional regulatory protein
[Mycobacterium tuberculosis str. Haarlem]
gi|308406239|ref|ZP_07669548.1| two component system transcriptional regulator [Mycobacterium
tuberculosis SUMu012]
gi|134151822|gb|EBA43867.1| hypothetical two component transcriptional regulatory protein
[Mycobacterium tuberculosis str. Haarlem]
gi|308364040|gb|EFP52891.1| two component system transcriptional regulator [Mycobacterium
tuberculosis SUMu012]
gi|323717630|gb|EGB26832.1| two component system transcriptional regulator [Mycobacterium
tuberculosis CDC1551A]
gi|339296572|gb|AEJ48683.1| DNA-binding response regulator [Mycobacterium tuberculosis CCDC5079]
gi|339300171|gb|AEJ52281.1| DNA-binding response regulator [Mycobacterium tuberculosis CCDC5180]
Length=246
Score = 469 bits (1207), Expect = 1e-130, Method: Compositional matrix adjust.
Identities = 234/234 (100%), Positives = 234/234 (100%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV
Sbjct 13 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 72
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL
Sbjct 73 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 132
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL
Sbjct 133 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 192
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR
Sbjct 193 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 246
>gi|308232561|ref|ZP_07664116.1| two component system transcriptional regulator [Mycobacterium
tuberculosis SUMu001]
gi|308369225|ref|ZP_07416994.2| two component system transcriptional regulator [Mycobacterium
tuberculosis SUMu002]
gi|308371446|ref|ZP_07667165.1| two component system transcriptional regulator [Mycobacterium
tuberculosis SUMu003]
19 more sequence titles
Length=252
Score = 469 bits (1206), Expect = 2e-130, Method: Compositional matrix adjust.
Identities = 234/234 (100%), Positives = 234/234 (100%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV
Sbjct 19 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 78
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL
Sbjct 79 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 138
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL
Sbjct 139 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 198
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR
Sbjct 199 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 252
>gi|15610901|ref|NP_218282.1| two component transcriptional regulatory protein [Mycobacterium
tuberculosis H37Rv]
gi|31794935|ref|NP_857428.1| putative two component transcriptional regulatory protein [Mycobacterium
bovis AF2122/97]
gi|121639679|ref|YP_979903.1| putative two component transcriptional regulatory protein [Mycobacterium
bovis BCG str. Pasteur 1173P2]
39 more sequence titles
Length=234
Score = 468 bits (1205), Expect = 2e-130, Method: Compositional matrix adjust.
Identities = 234/234 (100%), Positives = 234/234 (100%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV
Sbjct 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL
Sbjct 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL
Sbjct 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR
Sbjct 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
>gi|289556030|ref|ZP_06445240.1| two component system transcriptional regulator [Mycobacterium
tuberculosis KZN 605]
gi|289440662|gb|EFD23155.1| two component system transcriptional regulator [Mycobacterium
tuberculosis KZN 605]
Length=272
Score = 468 bits (1205), Expect = 3e-130, Method: Compositional matrix adjust.
Identities = 234/234 (100%), Positives = 234/234 (100%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV
Sbjct 39 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 98
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL
Sbjct 99 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 158
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL
Sbjct 159 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 218
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR
Sbjct 219 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 272
>gi|15843385|ref|NP_338422.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
gi|148824970|ref|YP_001289724.1| two component transcriptional regulatory protein [Mycobacterium
tuberculosis F11]
gi|253800812|ref|YP_003033813.1| two component system transcriptional regulator [Mycobacterium
tuberculosis KZN 1435]
8 more sequence titles
Length=286
Score = 467 bits (1201), Expect = 7e-130, Method: Compositional matrix adjust.
Identities = 234/234 (100%), Positives = 234/234 (100%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV
Sbjct 53 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 112
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL
Sbjct 113 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 172
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL
Sbjct 173 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 232
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR
Sbjct 233 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 286
>gi|41406357|ref|NP_959193.1| hypothetical protein MAP0259 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118466148|ref|YP_879593.1| DNA-binding response regulator [Mycobacterium avium 104]
gi|41394705|gb|AAS02576.1| hypothetical protein MAP_0259 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118167435|gb|ABK68332.1| DNA-binding response regulator [Mycobacterium avium 104]
Length=246
Score = 422 bits (1086), Expect = 1e-116, Method: Compositional matrix adjust.
Identities = 220/234 (95%), Positives = 223/234 (96%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
M RADG P+ VLVVDDE VLAEMVSMALRYEGWNI TA DG+SAIAAAR QRPDVVVLDV
Sbjct 13 MCRADGNPINVLVVDDEAVLAEMVSMALRYEGWNIATASDGASAIAAARNQRPDVVVLDV 72
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGLDVLHKLR ENP LPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL
Sbjct 73 MLPDMSGLDVLHKLREENPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 132
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEV RAGEP+SLTSTEFELLRFMM NSKRVL
Sbjct 133 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVL 192
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR
Sbjct 193 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 246
>gi|183985285|ref|YP_001853576.1| two-component transcriptional regulatory protein TcrX [Mycobacterium
marinum M]
gi|183178611|gb|ACC43721.1| two-component transcriptional regulatory protein TcrX [Mycobacterium
marinum M]
Length=235
Score = 422 bits (1086), Expect = 2e-116, Method: Compositional matrix adjust.
Identities = 219/234 (94%), Positives = 226/234 (97%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
M RADGQPV+VLVVDDEPVLAEMVSMALRYEGWNI TA DG+SAIA+AR +RPDVVVLDV
Sbjct 2 MCRADGQPVSVLVVDDEPVLAEMVSMALRYEGWNIATASDGASAIASARAERPDVVVLDV 61
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGL+VLH+LR ENP LPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL
Sbjct 62 MLPDMSGLEVLHRLRKENPALPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 121
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEV RAGEP+SLTSTEFELLRFMM NSKRVL
Sbjct 122 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVL 181
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR
Sbjct 182 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 235
>gi|254773313|ref|ZP_05214829.1| DNA-binding response regulator [Mycobacterium avium subsp. avium
ATCC 25291]
Length=234
Score = 422 bits (1084), Expect = 2e-116, Method: Compositional matrix adjust.
Identities = 220/234 (95%), Positives = 223/234 (96%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
M RADG P+ VLVVDDE VLAEMVSMALRYEGWNI TA DG+SAIAAAR QRPDVVVLDV
Sbjct 1 MCRADGNPINVLVVDDEAVLAEMVSMALRYEGWNIATASDGASAIAAARNQRPDVVVLDV 60
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGLDVLHKLR ENP LPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL
Sbjct 61 MLPDMSGLDVLHKLREENPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEV RAGEP+SLTSTEFELLRFMM NSKRVL
Sbjct 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVL 180
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR
Sbjct 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
>gi|254822466|ref|ZP_05227467.1| DNA-binding response regulator [Mycobacterium intracellulare
ATCC 13950]
Length=234
Score = 421 bits (1082), Expect = 5e-116, Method: Compositional matrix adjust.
Identities = 220/234 (95%), Positives = 224/234 (96%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
M RADG P+ VLVVDDEPVLAEMVSMALRYEGWNI+TAGDG SAIAAAR QRPDVVVLDV
Sbjct 1 MCRADGNPINVLVVDDEPVLAEMVSMALRYEGWNISTAGDGESAIAAARNQRPDVVVLDV 60
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGLDVLHKLR E P LPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL
Sbjct 61 MLPDMSGLDVLHKLRGEIPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEV RAGEP+SLTSTEFELLRFMM NSKRVL
Sbjct 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVL 180
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGR+PMIHTLRGAGYVLKPAR
Sbjct 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGRDPMIHTLRGAGYVLKPAR 234
>gi|342860017|ref|ZP_08716669.1| DNA-binding response regulator [Mycobacterium colombiense CECT
3035]
gi|342132395|gb|EGT85624.1| DNA-binding response regulator [Mycobacterium colombiense CECT
3035]
Length=234
Score = 421 bits (1081), Expect = 5e-116, Method: Compositional matrix adjust.
Identities = 219/234 (94%), Positives = 224/234 (96%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
M RADG P+ VLVVDDE VLA+MVSMALRYEGWNI+TAGDG+SAIA AR QRPDVVVLDV
Sbjct 1 MCRADGNPINVLVVDDESVLADMVSMALRYEGWNISTAGDGASAIATARTQRPDVVVLDV 60
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGLDVLHKLR ENP LPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL
Sbjct 61 MLPDMSGLDVLHKLREENPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEV RAGEP+SLTSTEFELLRFMM NSKRVL
Sbjct 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVL 180
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR
Sbjct 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
>gi|296166889|ref|ZP_06849306.1| DNA-binding response regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897766|gb|EFG77355.1| DNA-binding response regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=236
Score = 419 bits (1076), Expect = 2e-115, Method: Compositional matrix adjust.
Identities = 218/234 (94%), Positives = 224/234 (96%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
M RADG P+ VLVVDDE VLAEMVSMALRYEGWNI TAGDG+SA+AAAR QRPDVVVLDV
Sbjct 3 MCRADGNPINVLVVDDESVLAEMVSMALRYEGWNIATAGDGASALAAARGQRPDVVVLDV 62
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGLDVLHKLR ENP LPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL
Sbjct 63 MLPDMSGLDVLHKLREENPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 122
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGVTT+DSGAQLVVGDLVLDEDSHEV RAGEP+SLTSTEFELLRFMM NSKRVL
Sbjct 123 RALLRRTGVTTLDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVL 182
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGR+PMIHTLRGAGYVLKPAR
Sbjct 183 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGRDPMIHTLRGAGYVLKPAR 236
>gi|336460748|gb|EGO39636.1| response regulator with CheY-like receiver domain-containing
protein [Mycobacterium avium subsp. paratuberculosis S397]
Length=234
Score = 417 bits (1071), Expect = 9e-115, Method: Compositional matrix adjust.
Identities = 218/234 (94%), Positives = 221/234 (95%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
M RADG P+ VLVVDDE VLAEMVSMALRYEGWNI TA DG+SAIAAAR QRPDVVVLDV
Sbjct 1 MCRADGNPINVLVVDDEAVLAEMVSMALRYEGWNIATASDGASAIAAARNQRPDVVVLDV 60
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGLDVLHKLR NP LPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL
Sbjct 61 MLPDMSGLDVLHKLREANPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEV RAGEP+SLTSTEFELLRFMM NSKRVL
Sbjct 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVL 180
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
SKAQIL RVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR
Sbjct 181 SKAQILGRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
>gi|118619527|ref|YP_907859.1| two component transcriptional regulatory protein TcrX [Mycobacterium
ulcerans Agy99]
gi|118571637|gb|ABL06388.1| two component transcriptional regulatory protein TcrX [Mycobacterium
ulcerans Agy99]
Length=234
Score = 417 bits (1071), Expect = 9e-115, Method: Compositional matrix adjust.
Identities = 216/234 (93%), Positives = 225/234 (97%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
M RADGQPV+VLVVDDEPVLA+MVSMALRYEGWNI TA DG+SAIA+AR +RPDVVVLDV
Sbjct 1 MCRADGQPVSVLVVDDEPVLADMVSMALRYEGWNIATASDGASAIASARAERPDVVVLDV 60
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGL+VLH+LR ENP LPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEE+VLRL
Sbjct 61 MLPDMSGLEVLHRLRKENPRLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEIVLRL 120
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEV RAGEP+SLTSTEFELLRFMM NSKRVL
Sbjct 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVL 180
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
S AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR
Sbjct 181 SNAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
>gi|240168529|ref|ZP_04747188.1| two-component transcriptional regulatory protein TcrX [Mycobacterium
kansasii ATCC 12478]
Length=234
Score = 403 bits (1035), Expect = 1e-110, Method: Compositional matrix adjust.
Identities = 220/234 (95%), Positives = 225/234 (97%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
M RADGQP++VLVVDDEPVLAEMVSMALRYEGWNITTA DG+SAIAAAR RPDVVVLDV
Sbjct 1 MSRADGQPISVLVVDDEPVLAEMVSMALRYEGWNITTAQDGASAIAAARAARPDVVVLDV 60
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGL+VLHKLR ENP LPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL
Sbjct 61 MLPDMSGLEVLHKLRRENPRLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEV RAGEP+SLTSTEFELLRFMM NSKRVL
Sbjct 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVARAGEPISLTSTEFELLRFMMRNSKRVL 180
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGR PMIHTLRGAGYVLKPAR
Sbjct 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGRAPMIHTLRGAGYVLKPAR 234
>gi|118470471|ref|YP_889241.1| DNA-binding response regulator [Mycobacterium smegmatis str.
MC2 155]
gi|118171758|gb|ABK72654.1| DNA-binding response regulator [Mycobacterium smegmatis str.
MC2 155]
Length=249
Score = 390 bits (1002), Expect = 8e-107, Method: Compositional matrix adjust.
Identities = 201/234 (86%), Positives = 220/234 (95%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
MRRADG P+ VLVVDDEPVLAE+VSMALRYEGW+ITTAGDG+SAIAAAR PDVVVLDV
Sbjct 16 MRRADGNPIRVLVVDDEPVLAELVSMALRYEGWDITTAGDGASAIAAARETPPDVVVLDV 75
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGLDVL KLR + PGLP+LLLTAKD+VEDRIAGLTAGGDDYVTKPFS+EEVVLRL
Sbjct 76 MLPDMSGLDVLRKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVLRL 135
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGVT+ D GA++VVGDLVLDEDSHEV R G+P++LT+TEFELLRFMM N+KRVL
Sbjct 136 RALLRRTGVTSEDGGAKIVVGDLVLDEDSHEVTRGGDPIALTATEFELLRFMMRNAKRVL 195
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
SKAQILDRVWSYDFGGRSNIVELY+SYLRKKID+GREPMIHTLRGAGYVL+P R
Sbjct 196 SKAQILDRVWSYDFGGRSNIVELYVSYLRKKIDSGREPMIHTLRGAGYVLRPPR 249
>gi|120405382|ref|YP_955211.1| two component transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119958200|gb|ABM15205.1| two component transcriptional regulator, winged helix family
[Mycobacterium vanbaalenii PYR-1]
Length=250
Score = 385 bits (989), Expect = 3e-105, Method: Compositional matrix adjust.
Identities = 199/234 (86%), Positives = 218/234 (94%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
MRRADG P+ VLVVDDEPVLAE+VSMALRYEGW I+TAGDG++AIA AR PDVVVLDV
Sbjct 17 MRRADGSPIHVLVVDDEPVLAELVSMALRYEGWEISTAGDGATAIAIARDNPPDVVVLDV 76
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGL+VL KLR + PGLP+LLLTAKD+VEDRIAGLTAGGDDYVTKPFSIEEVVLRL
Sbjct 77 MLPDMSGLEVLRKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 136
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGV+T SGA++VVGDLVLDEDSHEV R G+P++LT+TEFELLRFMM N+KRVL
Sbjct 137 RALLRRTGVSTDTSGAKIVVGDLVLDEDSHEVTRGGDPITLTATEFELLRFMMRNAKRVL 196
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
SK QILDRVWSYDFGGRSNIVELY+SYLRKKID+GREPMIHTLRGAGYVLKPAR
Sbjct 197 SKTQILDRVWSYDFGGRSNIVELYVSYLRKKIDSGREPMIHTLRGAGYVLKPAR 250
>gi|108800890|ref|YP_641087.1| two component transcriptional regulator [Mycobacterium sp. MCS]
gi|119870030|ref|YP_939982.1| two component transcriptional regulator [Mycobacterium sp. KMS]
gi|126436516|ref|YP_001072207.1| two component transcriptional regulator [Mycobacterium sp. JLS]
gi|108771309|gb|ABG10031.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. MCS]
gi|119696119|gb|ABL93192.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. KMS]
gi|126236316|gb|ABN99716.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. JLS]
Length=254
Score = 380 bits (977), Expect = 6e-104, Method: Compositional matrix adjust.
Identities = 199/233 (86%), Positives = 216/233 (93%), Gaps = 1/233 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
MRRADG PV VLVVDDEPVLAE+VSMALRYEGW+I TAGDG++AIA AR PDVVVLDV
Sbjct 21 MRRADGNPVRVLVVDDEPVLAELVSMALRYEGWDIATAGDGATAIALARENPPDVVVLDV 80
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGLDVL KLR + PGLP+LLLTAKD+VEDRIAGLTAGGDDYVTKPFS+EEVVLRL
Sbjct 81 MLPDMSGLDVLAKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVLRL 140
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGV+ GA++VVGDLVLDEDSHEV R G+P++LT+TEFELLRFMM NSKRVL
Sbjct 141 RALLRRTGVSE-SGGAKIVVGDLVLDEDSHEVTRGGDPITLTATEFELLRFMMRNSKRVL 199
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
SKAQILDRVWSYDFGGRSNIVELY+SYLRKKID+GREPMIHTLRGAGYVLKPA
Sbjct 200 SKAQILDRVWSYDFGGRSNIVELYVSYLRKKIDSGREPMIHTLRGAGYVLKPA 252
>gi|333992682|ref|YP_004525296.1| two-component transcriptional regulatory protein TcrX [Mycobacterium
sp. JDM601]
gi|333488650|gb|AEF38042.1| two-component transcriptional regulatory protein TcrX [Mycobacterium
sp. JDM601]
Length=235
Score = 377 bits (967), Expect = 1e-102, Method: Compositional matrix adjust.
Identities = 200/233 (86%), Positives = 218/233 (94%), Gaps = 0/233 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
M RADG+P+TVLVVDDE VLAEMVSMALRYEGW TAGDG+SAIAAA+ +RPDVVVLDV
Sbjct 2 MARADGKPITVLVVDDETVLAEMVSMALRYEGWTTATAGDGASAIAAAKAERPDVVVLDV 61
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGLDVL KLR NP LPVL LTAKDA+EDRIAGLTAGGDDYVTKPFSIEEVVLRL
Sbjct 62 MLPDMSGLDVLRKLREINPRLPVLFLTAKDALEDRIAGLTAGGDDYVTKPFSIEEVVLRL 121
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGV+T ++GAQ+VVGDLVLDEDSHEV R G+P++LTSTEFELLR++MHN++RVL
Sbjct 122 RALLRRTGVSTAEAGAQIVVGDLVLDEDSHEVTRGGDPITLTSTEFELLRYLMHNARRVL 181
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
SKAQILDRVW YDFGGR+NIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA
Sbjct 182 SKAQILDRVWDYDFGGRANIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 234
>gi|145222854|ref|YP_001133532.1| two component transcriptional regulator [Mycobacterium gilvum
PYR-GCK]
gi|315443319|ref|YP_004076198.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
gi|145215340|gb|ABP44744.1| two component transcriptional regulator, winged helix family
[Mycobacterium gilvum PYR-GCK]
gi|315261622|gb|ADT98363.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
Length=249
Score = 373 bits (958), Expect = 1e-101, Method: Compositional matrix adjust.
Identities = 194/234 (83%), Positives = 215/234 (92%), Gaps = 0/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
MRRADG P+ VLVVDDE VLAE++SMALRYEGW+I+TAGDG++AIA AR+ PDVVVLDV
Sbjct 16 MRRADGSPIRVLVVDDEAVLAELMSMALRYEGWDISTAGDGATAIALARQNPPDVVVLDV 75
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDMSGL+VL LR + PGLP+LLLTAKD+VEDRIAGLTAGGDDYVTKPFSIEEVVLRL
Sbjct 76 MLPDMSGLEVLRTLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 135
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRRTGV T GA+LVVGDLVLDEDSHEV R G+ ++LT+TEFELLRFMM N++ VL
Sbjct 136 RALLRRTGVATATGGAKLVVGDLVLDEDSHEVTRGGDLITLTATEFELLRFMMRNARCVL 195
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
SKAQILDRVWSYDFGGRSNIVELY+SYLRKKID+GREPMIHTLRGAGYVLKPAR
Sbjct 196 SKAQILDRVWSYDFGGRSNIVELYVSYLRKKIDSGREPMIHTLRGAGYVLKPAR 249
>gi|331698780|ref|YP_004335019.1| winged helix family two component transcriptional regulator [Pseudonocardia
dioxanivorans CB1190]
gi|326953469|gb|AEA27166.1| two component transcriptional regulator, winged helix family
[Pseudonocardia dioxanivorans CB1190]
Length=247
Score = 348 bits (893), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 167/233 (72%), Positives = 197/233 (85%), Gaps = 0/233 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
++RADG V VLVVDDE L++++ MALRYEGW++ T DG+SA+ AAR RPD VVLDV
Sbjct 12 LQRADGSAVRVLVVDDEATLSDLLGMALRYEGWDVRTEADGASAVRAAREFRPDAVVLDV 71
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPD+ GL+VL ++R++ P +PVL LTAKDAVEDR+AGLTAGGDDYVTKPFS+EE+V RL
Sbjct 72 MLPDLDGLEVLRRMRADTPDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARL 131
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
R LLRR+G+T G++L VGDL LDEDSHEV R V LT+TEFELLRF+M N +RVL
Sbjct 132 RGLLRRSGMTAAQQGSELAVGDLTLDEDSHEVRRGDVEVDLTATEFELLRFLMRNPRRVL 191
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
SKAQILDRVW YDFGG+SN+VELYISYLRKKIDNGR PMIHT+RGAGYVLKPA
Sbjct 192 SKAQILDRVWHYDFGGQSNVVELYISYLRKKIDNGRAPMIHTVRGAGYVLKPA 244
>gi|297200795|ref|ZP_06918192.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces
sviceus ATCC 29083]
gi|197712366|gb|EDY56400.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces
sviceus ATCC 29083]
Length=269
Score = 344 bits (883), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 170/231 (74%), Positives = 193/231 (84%), Gaps = 0/231 (0%)
Query 3 RADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVML 62
R DG PV VLVVDDE + E++SMALRYEGW I +AGDG+ A+ AR RPD VVLD+ML
Sbjct 37 RPDGSPVRVLVVDDELSITELLSMALRYEGWQIRSAGDGTGAVQTAREFRPDAVVLDMML 96
Query 63 PDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRA 122
PDM GL VL +LR E P +PVL LTAKDAVEDRIAGLTAGGDDYVTKPFS+EEVV RLR
Sbjct 97 PDMDGLAVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRG 156
Query 123 LLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSK 182
L+RR+G S + LVVGDL LDEDSHEV RAGE + LT+TEFELLRF+M N +RVLSK
Sbjct 157 LIRRSGAADRRSDSVLVVGDLTLDEDSHEVSRAGENIHLTATEFELLRFLMRNPRRVLSK 216
Query 183 AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
AQILDRVWSYDFGG++N+VELYISYLR+KID GREPMIHT RGAGY++KPA
Sbjct 217 AQILDRVWSYDFGGQANVVELYISYLRRKIDAGREPMIHTRRGAGYLIKPA 267
>gi|302552564|ref|ZP_07304906.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces
viridochromogenes DSM 40736]
gi|302470182|gb|EFL33275.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces
viridochromogenes DSM 40736]
Length=268
Score = 343 bits (880), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 170/231 (74%), Positives = 193/231 (84%), Gaps = 0/231 (0%)
Query 3 RADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVML 62
R DG PV VLVVDDE + E++SMALRYEGW I +AGDG AI +AR RPD VVLD+ML
Sbjct 36 RPDGSPVRVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAIQSARDFRPDAVVLDMML 95
Query 63 PDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRA 122
PDM GL VL +LR E P +PVL LTAKDAVEDRIAGLTAGGDDYVTKPFS+EEVV RLR
Sbjct 96 PDMDGLAVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRG 155
Query 123 LLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSK 182
L+RR+G S + LVVGDL LDEDSHEV RAG+ + LT+TEFELLRF+M N +RVLSK
Sbjct 156 LIRRSGAADRRSESMLVVGDLTLDEDSHEVTRAGDNIHLTATEFELLRFLMRNPRRVLSK 215
Query 183 AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
AQILDRVWSYDFGG++N+VELYISYLR+KID GREPMIHT RGAGY++KPA
Sbjct 216 AQILDRVWSYDFGGQANVVELYISYLRRKIDAGREPMIHTRRGAGYLIKPA 266
>gi|29830741|ref|NP_825375.1| two-component system response regulator [Streptomyces avermitilis
MA-4680]
gi|29607854|dbj|BAC71910.1| putative two-component system response regulator [Streptomyces
avermitilis MA-4680]
Length=269
Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 169/231 (74%), Positives = 192/231 (84%), Gaps = 0/231 (0%)
Query 3 RADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVML 62
R DG PV VLVVDDE + E++SMALRYEGW I +AGDG A+ AR RPD VVLD+ML
Sbjct 37 RPDGSPVRVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMML 96
Query 63 PDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRA 122
PDM GL VL +LR E P +PVL LTAKDAVEDRIAGLTAGGDDYVTKPFS+EEVV RLR
Sbjct 97 PDMDGLTVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRG 156
Query 123 LLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSK 182
L+RR+G S + LVVGDL LDEDSHEV R+GE + LT+TEFELLRF+M N +RVLSK
Sbjct 157 LIRRSGAADRRSDSMLVVGDLTLDEDSHEVSRSGENIHLTATEFELLRFLMRNPRRVLSK 216
Query 183 AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
AQILDRVWSYDFGG++N+VELYISYLR+KID GREPMIHT RGAGY++KPA
Sbjct 217 AQILDRVWSYDFGGQANVVELYISYLRRKIDAGREPMIHTRRGAGYLIKPA 267
>gi|324999382|ref|ZP_08120494.1| two component transcriptional regulator, winged helix family
protein [Pseudonocardia sp. P1]
Length=246
Score = 343 bits (879), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 161/233 (70%), Positives = 197/233 (85%), Gaps = 0/233 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
+RRADG P+ VLVVDDE L++++SMALRYEGW + TAGDG++A+ AR RPD +VLDV
Sbjct 12 LRRADGSPIRVLVVDDESTLSDLLSMALRYEGWEVRTAGDGATAVRHAREFRPDAIVLDV 71
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPD+ G +VL ++R+ P +PVL LTA+DAVEDR+AGLTAGGDDYVTKPFS+EE+V RL
Sbjct 72 MLPDVDGFEVLRRVRAGTPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARL 131
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
R LLRR G+ ++LVVGDLVLDED+HEV RA P+ LT+TEFELLR++M N +RVL
Sbjct 132 RGLLRRAGMAAAQRSSELVVGDLVLDEDAHEVRRADRPIELTATEFELLRYLMRNPRRVL 191
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
SKAQILDRVW+YDFGG+SN+VELY+SYLRKKID G PMIHT+RGAGYVL+PA
Sbjct 192 SKAQILDRVWNYDFGGQSNVVELYVSYLRKKIDAGYAPMIHTVRGAGYVLRPA 244
>gi|296394075|ref|YP_003658959.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
gi|296181222|gb|ADG98128.1| two component transcriptional regulator, winged helix family
[Segniliparus rotundus DSM 44985]
Length=241
Score = 343 bits (879), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 180/233 (78%), Positives = 197/233 (85%), Gaps = 0/233 (0%)
Query 2 RRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVM 61
RRA G P VLVVDDE LAE+VSMALR EGW A DG+ AI AR PDVVVLDVM
Sbjct 9 RRAGGGPARVLVVDDEQALAELVSMALRREGWEPAVAFDGAGAIKLARDAAPDVVVLDVM 68
Query 62 LPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLR 121
LPDMSGL+VL +LR P LP+LLLTAKDAVEDRIAGLTAGGDDYVTKPFS+EE++LR+R
Sbjct 69 LPDMSGLEVLLRLREMYPALPLLLLTAKDAVEDRIAGLTAGGDDYVTKPFSLEELMLRVR 128
Query 122 ALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLS 181
ALLRR G+ DS A++VVGDLVLDEDSHEV R G+P+ LT+TEFELLRFMM N+KRVLS
Sbjct 129 ALLRRAGMAGEDSDARIVVGDLVLDEDSHEVSRGGDPIVLTATEFELLRFMMRNAKRVLS 188
Query 182 KAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPAR 234
K QILDRVWSYDFGGRSNIVELY+SYLRKKID REPMIHTLRG GYVLKPAR
Sbjct 189 KNQILDRVWSYDFGGRSNIVELYVSYLRKKIDTEREPMIHTLRGVGYVLKPAR 241
>gi|302544103|ref|ZP_07296445.1| DNA-binding response regulator TrcR [Streptomyces hygroscopicus
ATCC 53653]
gi|302461721|gb|EFL24814.1| DNA-binding response regulator TrcR [Streptomyces himastatinicus
ATCC 53653]
Length=290
Score = 342 bits (877), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 168/231 (73%), Positives = 191/231 (83%), Gaps = 0/231 (0%)
Query 3 RADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVML 62
R DG PV VLVVDDE LA+++SMALRYEGW + TAGDG+ AI R RPD VVLDVML
Sbjct 59 RPDGSPVRVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRTTRELRPDAVVLDVML 118
Query 63 PDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRA 122
PDM GL VL +LR E P +PVL LTA+DAVEDRIAGLTAGGDDYVTKPFS+EEVV RLR
Sbjct 119 PDMDGLTVLGRLRRELPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRG 178
Query 123 LLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSK 182
LLRR+G S + L VGDLVLDEDSHEV RAG+ + LT+TEFELLR++M N +RVLSK
Sbjct 179 LLRRSGAAAARSESVLAVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSK 238
Query 183 AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
AQILDRVWSYDFGG++N+VELYISYLR+KID GR PMIHT RGAGY++KP
Sbjct 239 AQILDRVWSYDFGGQANVVELYISYLRRKIDAGRSPMIHTRRGAGYLIKPG 289
>gi|294630229|ref|ZP_06708789.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
gi|292833562|gb|EFF91911.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
Length=269
Score = 341 bits (875), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 168/231 (73%), Positives = 190/231 (83%), Gaps = 0/231 (0%)
Query 3 RADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVML 62
R DG PV VLVVDDE + E++SMALRYEGW I +AGDG A+ AR RPD VVLD+ML
Sbjct 37 RPDGSPVRVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMML 96
Query 63 PDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRA 122
PDM GL VL +LR E P +PVL LTAKDAVEDRIAGLTAGGDDYVTKPFS+EEVV RLR
Sbjct 97 PDMDGLTVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRG 156
Query 123 LLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSK 182
L+RR G S + LVVGDL LDEDSHEV R G+ + LT+TEFELLRF+M N +RVLSK
Sbjct 157 LIRRAGAADRRSESVLVVGDLTLDEDSHEVSRGGQDIHLTATEFELLRFLMRNPRRVLSK 216
Query 183 AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
AQILDRVWSYDFGG++N+VELYISYLR+KID GREPMIHT RGAGY++KPA
Sbjct 217 AQILDRVWSYDFGGQANVVELYISYLRRKIDAGREPMIHTRRGAGYLIKPA 267
>gi|290959131|ref|YP_003490313.1| two component system response regulator [Streptomyces scabiei
87.22]
gi|260648657|emb|CBG71770.1| putative two component system response regulator [Streptomyces
scabiei 87.22]
Length=249
Score = 341 bits (874), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 169/231 (74%), Positives = 193/231 (84%), Gaps = 0/231 (0%)
Query 3 RADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVML 62
R DG PV VLVVDDE + E++SMALRYEGW I +AGDG+ A+ AR RPD VVLD+ML
Sbjct 17 RPDGSPVRVLVVDDELSITELLSMALRYEGWQIRSAGDGTGALQTARDFRPDAVVLDMML 76
Query 63 PDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRA 122
PDM GL VL +LR E P +PVL LTAKDAVEDRIAGLTAGGDDYVTKPFS+EEVV RLR
Sbjct 77 PDMDGLTVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRG 136
Query 123 LLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSK 182
L+RR+G S + LVVGDL+LDEDSHEV RAG + LT+TEFELLRF+M N +RVLSK
Sbjct 137 LIRRSGAADRRSDSVLVVGDLMLDEDSHEVSRAGANIHLTATEFELLRFLMRNPRRVLSK 196
Query 183 AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
AQILDRVWSYDFGG++N+VELYISYLR+KID GREPMIHT RGAGY++KPA
Sbjct 197 AQILDRVWSYDFGGQANVVELYISYLRRKIDAGREPMIHTRRGAGYLIKPA 247
>gi|145594662|ref|YP_001158959.1| response regulator receiver [Salinispora tropica CNB-440]
gi|145303999|gb|ABP54581.1| response regulator receiver [Salinispora tropica CNB-440]
Length=252
Score = 341 bits (874), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 167/234 (72%), Positives = 197/234 (85%), Gaps = 1/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
+RR DGQPV VLVVDDE LA+++SMALRYEGW + TAG+G +A++AAR+ +PD VVLDV
Sbjct 18 LRRPDGQPVRVLVVDDESTLADLLSMALRYEGWQVRTAGNGMAALSAARQFQPDAVVLDV 77
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPD+ G VL +LR P +PVL LTA+DAVEDR+AGLT GGDDYVTKPFS+EEV+ RL
Sbjct 78 MLPDLDGFAVLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARL 137
Query 121 RALLRRTGVT-TVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRV 179
RALLRR+G T A L VGDL LDEDSHEV R G+ ++LT+TEFELLR++M N +RV
Sbjct 138 RALLRRSGFAVTARQEAVLTVGDLSLDEDSHEVSRDGQLINLTATEFELLRYLMRNPRRV 197
Query 180 LSKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
LSKAQILDRVW+YDFGG++N+VELYISYLRKKID GR PMIHTLRGAGYVLKPA
Sbjct 198 LSKAQILDRVWNYDFGGQANVVELYISYLRKKIDVGRAPMIHTLRGAGYVLKPA 251
>gi|297625540|ref|YP_003687303.1| two component system response regulator [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|32452353|emb|CAD59399.1| putative two-component system regulatory protein [Propionibacterium
freudenreichii subsp. shermanii]
gi|296921305|emb|CBL55858.1| two component system response regulator [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length=242
Score = 340 bits (873), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 161/233 (70%), Positives = 195/233 (84%), Gaps = 0/233 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
+ R DG P+ VL VDDE L E++SMA+RYEGW TTA GS A+ AAR PD +VLD+
Sbjct 10 LTRPDGTPIRVLAVDDENSLTELLSMAMRYEGWEPTTAATGSDAVRAARDTNPDAIVLDM 69
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPD GL+V+ ++R+E P +PV+ LTAKDAV DRI GLTAGGDDYVTKPFS+EE++ RL
Sbjct 70 MLPDFDGLEVMRRVRAEQPDVPVIFLTAKDAVNDRIVGLTAGGDDYVTKPFSVEELMARL 129
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
R+LLRR+G T+ S ++L+VGDLVLDEDSHEV R G+ + LT+TEFELLR++M N KRVL
Sbjct 130 RSLLRRSGATSKRSESELIVGDLVLDEDSHEVTRGGDEIHLTATEFELLRYLMRNPKRVL 189
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
SKAQILDRVW+YDFGG++N+VELYISYLRKKID GREPMIHT+RGAGYVLKPA
Sbjct 190 SKAQILDRVWNYDFGGQANVVELYISYLRKKIDAGREPMIHTMRGAGYVLKPA 242
>gi|302559780|ref|ZP_07312122.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
Tu4000]
gi|302477398|gb|EFL40491.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
Tu4000]
Length=249
Score = 340 bits (873), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 167/231 (73%), Positives = 191/231 (83%), Gaps = 0/231 (0%)
Query 3 RADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVML 62
R DG PV VLVVDDE + E++SMALRYEGW I +AGDG A+ AR RPD VVLD+ML
Sbjct 17 RPDGSPVRVLVVDDEQSITELLSMALRYEGWQIRSAGDGQGALRTAREFRPDAVVLDMML 76
Query 63 PDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRA 122
PDM GL +L +LR E P +PVL LTAKDAVEDRIAGLTAGGDDYVTKPFS+EEVV RLR
Sbjct 77 PDMDGLAILGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRG 136
Query 123 LLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSK 182
L+RR+G S + LVVGDL LDEDSHEV R G+ + LT+TEFELLRF+M N +RVLSK
Sbjct 137 LIRRSGAADRRSESMLVVGDLTLDEDSHEVTRGGDGIHLTATEFELLRFLMRNPRRVLSK 196
Query 183 AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
AQILDRVWSYDFGG++N+VELYISYLR+KID GREPMIHT RGAGY++KPA
Sbjct 197 AQILDRVWSYDFGGQANVVELYISYLRRKIDAGREPMIHTRRGAGYLIKPA 247
>gi|21222423|ref|NP_628202.1| two component system response regulator [Streptomyces coelicolor
A3(2)]
gi|13122184|emb|CAC32360.1| putative two component system response regulator [Streptomyces
coelicolor A3(2)]
Length=271
Score = 340 bits (872), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 167/231 (73%), Positives = 192/231 (84%), Gaps = 0/231 (0%)
Query 3 RADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVML 62
R DG PV VLVVDDE + E++SMALRYEGW I +AGDG A+ AR RPD VVLD+ML
Sbjct 39 RPDGSPVRVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMML 98
Query 63 PDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRA 122
PDM GL VL +LR + P +PVL LTAKDAVEDRIAGLTAGGDDYVTKPFS+EEVV RLR
Sbjct 99 PDMDGLSVLGRLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRG 158
Query 123 LLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSK 182
L+RR+G S + LVVGDL LDEDSHEV R+G+ + LT+TEFELLRF+M N +RVLSK
Sbjct 159 LIRRSGAADRRSDSVLVVGDLTLDEDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSK 218
Query 183 AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
AQILDRVWSYDFGG++N+VELYISYLR+KID GREPMIHT RGAGY++KPA
Sbjct 219 AQILDRVWSYDFGGQANVVELYISYLRRKIDAGREPMIHTRRGAGYLIKPA 269
>gi|289770395|ref|ZP_06529773.1| two component system response regulator [Streptomyces lividans
TK24]
gi|289700594|gb|EFD68023.1| two component system response regulator [Streptomyces lividans
TK24]
Length=285
Score = 340 bits (871), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 167/231 (73%), Positives = 192/231 (84%), Gaps = 0/231 (0%)
Query 3 RADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVML 62
R DG PV VLVVDDE + E++SMALRYEGW I +AGDG A+ AR RPD VVLD+ML
Sbjct 53 RPDGSPVRVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMML 112
Query 63 PDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRA 122
PDM GL VL +LR + P +PVL LTAKDAVEDRIAGLTAGGDDYVTKPFS+EEVV RLR
Sbjct 113 PDMDGLSVLGRLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRG 172
Query 123 LLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSK 182
L+RR+G S + LVVGDL LDEDSHEV R+G+ + LT+TEFELLRF+M N +RVLSK
Sbjct 173 LIRRSGAADRRSDSVLVVGDLTLDEDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSK 232
Query 183 AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
AQILDRVWSYDFGG++N+VELYISYLR+KID GREPMIHT RGAGY++KPA
Sbjct 233 AQILDRVWSYDFGGQANVVELYISYLRRKIDAGREPMIHTRRGAGYLIKPA 283
>gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614]
gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614]
Length=236
Score = 340 bits (871), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 162/231 (71%), Positives = 192/231 (84%), Gaps = 0/231 (0%)
Query 3 RADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVML 62
R DG P+ VLVVDDE +AE++SMALRYEGW + A GS A+AAA+ RPD VVLD+ML
Sbjct 5 RPDGTPLRVLVVDDEANIAELISMALRYEGWQVRAAHTGSKAVAAAKEFRPDAVVLDIML 64
Query 63 PDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRA 122
PD GL+VL ++RS +P +PV+ LTA+DAVEDR+AGLTAGGDDYVTKPFS+EE+V RLR
Sbjct 65 PDFDGLEVLRRIRSTDPSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRG 124
Query 123 LLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSK 182
L+RR G + + LVVGDL LDEDS EV RAG V+LT+TEFELLRF+M N +RVLSK
Sbjct 125 LMRRAGAQQATASSTLVVGDLELDEDSREVFRAGREVTLTATEFELLRFLMRNPRRVLSK 184
Query 183 AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
AQILDRVW+YDFGG++N+VELYISYLRKKID G EPMIHT+RGAGYVLKPA
Sbjct 185 AQILDRVWNYDFGGQANVVELYISYLRKKIDAGHEPMIHTMRGAGYVLKPA 235
>gi|269796544|ref|YP_003315999.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing
response regulator [Sanguibacter keddieii DSM 10542]
gi|269098729|gb|ACZ23165.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Sanguibacter keddieii DSM 10542]
Length=271
Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 161/233 (70%), Positives = 197/233 (85%), Gaps = 0/233 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
+ RADG P+ VLVVDDEP LAE+++ ALRYEGW+++TA DG +A+ AR PDV+VLD+
Sbjct 15 LTRADGSPLRVLVVDDEPNLAELLTSALRYEGWDVSTALDGQTAVRLARETVPDVIVLDI 74
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
ML D+ GL+VL ++R + G+PVL LTA+D+VEDR+AGLTAGGDDYVTKPFS+EEVV RL
Sbjct 75 MLGDIDGLEVLRRIRQQQEGVPVLFLTARDSVEDRVAGLTAGGDDYVTKPFSLEEVVARL 134
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
R LLRR G + A+LVVGDL LDEDSHEV RAG+ + LT+TEFELLR++M N++RV+
Sbjct 135 RGLLRRAGASAARDEARLVVGDLTLDEDSHEVDRAGQEIHLTATEFELLRYLMRNARRVM 194
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
SK+QILDRVW YDFGG++NIVELYISYLR+KID GREPMIHTLRG GYVLKPA
Sbjct 195 SKSQILDRVWQYDFGGQANIVELYISYLRRKIDAGREPMIHTLRGVGYVLKPA 247
>gi|302867311|ref|YP_003835948.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
gi|315506283|ref|YP_004085170.1| winged helix family two component transcriptional regulator [Micromonospora
sp. L5]
gi|302570170|gb|ADL46372.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
gi|315412902|gb|ADU11019.1| two component transcriptional regulator, winged helix family
[Micromonospora sp. L5]
Length=246
Score = 338 bits (868), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 163/234 (70%), Positives = 193/234 (83%), Gaps = 1/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
+RR DG+PV VLVVDDEP L +++SMALRYEGW + TAG G +A+ AR+ RPD VVLDV
Sbjct 12 LRRPDGEPVRVLVVDDEPTLTDLLSMALRYEGWQVATAGSGMAAVTTARQFRPDAVVLDV 71
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPD+ G VL +LR + P +PVL LTA+DAVE+R+AGLT GGDDYVTKPFS+EEV+ RL
Sbjct 72 MLPDLDGFQVLRRLREQFPSVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARL 131
Query 121 RALLRRTGVT-TVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRV 179
RALLRR+G A L VGDL LDEDSHEV R + ++LT+TEFELLR++M N +RV
Sbjct 132 RALLRRSGFAVAARQEAVLTVGDLTLDEDSHEVRRGDDLITLTATEFELLRYLMRNPRRV 191
Query 180 LSKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
LSKAQILDRVW+YDFGG++N+VELYISYLRKKID GR PMIHTLRGAGYVLKPA
Sbjct 192 LSKAQILDRVWNYDFGGQANVVELYISYLRKKIDAGRAPMIHTLRGAGYVLKPA 245
>gi|300790732|ref|YP_003771023.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
gi|299800246|gb|ADJ50621.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
Length=249
Score = 338 bits (867), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 180/233 (78%), Positives = 198/233 (85%), Gaps = 0/233 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
+RRADG PV VLVVDDE LAE+VSMALR EGW + +AGDG+ A+ AR RPD VVLDV
Sbjct 16 LRRADGSPVRVLVVDDEATLAELVSMALRMEGWEVRSAGDGTEAVRIAREFRPDAVVLDV 75
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPD SGL+VL ++RSE P LPVL LTAKDAVEDRIAGLTAGGDDYVTKPFS+EEV LRL
Sbjct 76 MLPDFSGLEVLRRMRSEAPQLPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVALRL 135
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRR G T SG+ LVVGDL LDEDS EV R G+ V LT+TEFELLR++M N KRVL
Sbjct 136 RALLRRAGGVTGASGSTLVVGDLTLDEDSREVHRGGDLVPLTATEFELLRYLMRNPKRVL 195
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
SKAQILDRVWSYDFGG++NIVELYISYLRKKID REPMIHT+RGAGYVLKPA
Sbjct 196 SKAQILDRVWSYDFGGQANIVELYISYLRKKIDADREPMIHTMRGAGYVLKPA 248
>gi|291438629|ref|ZP_06578019.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291341524|gb|EFE68480.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
Length=268
Score = 338 bits (867), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 166/231 (72%), Positives = 190/231 (83%), Gaps = 0/231 (0%)
Query 3 RADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVML 62
R DG PV VLVVDDE + E++SMALRYEGW I + GDG A+ AAR RPD VVLD+ML
Sbjct 37 RPDGGPVRVLVVDDEQSITELLSMALRYEGWQIHSEGDGQGALRAARELRPDAVVLDMML 96
Query 63 PDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRA 122
PDM GL VL +LR E P +PVL LTAK +VE+R+AGLTAGGDDYVTKPF +EEVV RLR
Sbjct 97 PDMDGLSVLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRG 156
Query 123 LLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSK 182
L+RR+G +G+ LVVGDL LDEDSHEV RAGE + LT+TEFELLRF+M N +RVLSK
Sbjct 157 LIRRSGAADRRAGSLLVVGDLTLDEDSHEVTRAGEGIHLTATEFELLRFLMRNPRRVLSK 216
Query 183 AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
AQILDRVWSYDFGG +N+VELYISYLRKKID GREPMIHT RGAGY++KPA
Sbjct 217 AQILDRVWSYDFGGHANVVELYISYLRKKIDAGREPMIHTRRGAGYMIKPA 267
>gi|340532422|gb|AEK47627.1| two-component system response regulator [Amycolatopsis mediterranei
S699]
Length=246
Score = 338 bits (867), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 180/233 (78%), Positives = 198/233 (85%), Gaps = 0/233 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
+RRADG PV VLVVDDE LAE+VSMALR EGW + +AGDG+ A+ AR RPD VVLDV
Sbjct 13 LRRADGSPVRVLVVDDEATLAELVSMALRMEGWEVRSAGDGTEAVRIAREFRPDAVVLDV 72
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPD SGL+VL ++RSE P LPVL LTAKDAVEDRIAGLTAGGDDYVTKPFS+EEV LRL
Sbjct 73 MLPDFSGLEVLRRMRSEAPQLPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVALRL 132
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RALLRR G T SG+ LVVGDL LDEDS EV R G+ V LT+TEFELLR++M N KRVL
Sbjct 133 RALLRRAGGVTGASGSTLVVGDLTLDEDSREVHRGGDLVPLTATEFELLRYLMRNPKRVL 192
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
SKAQILDRVWSYDFGG++NIVELYISYLRKKID REPMIHT+RGAGYVLKPA
Sbjct 193 SKAQILDRVWSYDFGGQANIVELYISYLRKKIDADREPMIHTMRGAGYVLKPA 245
>gi|345016321|ref|YP_004818675.1| winged helix family two component transcriptional regulator [Streptomyces
violaceusniger Tu 4113]
gi|344042670|gb|AEM88395.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
Length=245
Score = 338 bits (866), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 166/231 (72%), Positives = 189/231 (82%), Gaps = 0/231 (0%)
Query 3 RADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVML 62
R DG PV VLVVDDE LA+++SMALRYEGW + TAGDG+ AI R RPD VVLDVML
Sbjct 14 RPDGSPVRVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRITRELRPDAVVLDVML 73
Query 63 PDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRA 122
PDM GL VL +LR E P +PVL LTA+DAVEDRIAGLTAGGDDYVTKPFS+EEVV RLR
Sbjct 74 PDMDGLTVLGRLRRELPDIPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRG 133
Query 123 LLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSK 182
LLRR+G S + L VGDL+LDEDSHEV R G + LT+TEFELLR++M N +RVLSK
Sbjct 134 LLRRSGAAAARSESVLAVGDLILDEDSHEVSRGGREIHLTATEFELLRYLMRNPRRVLSK 193
Query 183 AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
AQILDRVWSYDFGG++N+VELYISYLR+KID GR PMIHT RGAGY++KP
Sbjct 194 AQILDRVWSYDFGGQANVVELYISYLRRKIDAGRSPMIHTRRGAGYLIKPG 244
>gi|336116252|ref|YP_004571018.1| two-component system response regulator [Microlunatus phosphovorus
NM-1]
gi|334684030|dbj|BAK33615.1| two-component system response regulator [Microlunatus phosphovorus
NM-1]
Length=248
Score = 338 bits (866), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 158/231 (69%), Positives = 193/231 (84%), Gaps = 0/231 (0%)
Query 3 RADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVML 62
R DG + +L VDDE L E++SMA+RYEGW ++TA GS A+ AAR RPD +VLD+ML
Sbjct 17 RPDGTAIRILAVDDESSLTELLSMAMRYEGWQVSTAASGSEAVKAAREVRPDAIVLDMML 76
Query 63 PDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRA 122
PD GL+V+ ++R+E+P +PV+ LTAKDAV DRI+GLTAGGDDYVTKPFS+EEV+ RLRA
Sbjct 77 PDFDGLEVMRRVRAEDPDVPVIFLTAKDAVADRISGLTAGGDDYVTKPFSLEEVIARLRA 136
Query 123 LLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSK 182
LLRR+G T S + LVVGDL LDEDSHEV RAG+ + LT+TEFELLR++M N +RVLSK
Sbjct 137 LLRRSGAATGRSESLLVVGDLTLDEDSHEVARAGDAIQLTATEFELLRYLMRNPRRVLSK 196
Query 183 AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
AQILDRVW+YDFGG++N+VELYISYLRKKID R PMIHT+RGAGYVL+PA
Sbjct 197 AQILDRVWNYDFGGQANVVELYISYLRKKIDANRAPMIHTMRGAGYVLRPA 247
>gi|330468634|ref|YP_004406377.1| two component transcriptional regulator [Verrucosispora maris
AB-18-032]
gi|328811605|gb|AEB45777.1| two component transcriptional regulator [Verrucosispora maris
AB-18-032]
Length=247
Score = 338 bits (866), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 163/234 (70%), Positives = 198/234 (85%), Gaps = 1/234 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
+RR DG+ V VLVVDDEP L +++SMALRYEGW + TAGDG AI AAR+ +PD VVLDV
Sbjct 13 LRRPDGEAVRVLVVDDEPTLTDLLSMALRYEGWQVRTAGDGMGAIRAARQFQPDAVVLDV 72
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPD+ G +VL KLR ++ +PVL LTA+DAVE+R+AGLT GGDDYVTKPFS+EEV+ RL
Sbjct 73 MLPDLDGFEVLRKLREDDATVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARL 132
Query 121 RALLRRTGVT-TVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRV 179
RALLRR+G T A L VGDL L+E+SHEV R+G+ ++LT+TEFELLR++M N +RV
Sbjct 133 RALLRRSGFAVTARQDAVLTVGDLTLNEESHEVRRSGQLITLTATEFELLRYLMRNPRRV 192
Query 180 LSKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
LSKAQILDRVW+YDFGG++N+VELYISYLRKKID GR+PMIHTLRGAGY+LKPA
Sbjct 193 LSKAQILDRVWNYDFGGQANVVELYISYLRKKIDAGRQPMIHTLRGAGYLLKPA 246
>gi|297193412|ref|ZP_06910810.1| two-component system response regulator [Streptomyces pristinaespiralis
ATCC 25486]
gi|297151766|gb|EFH31343.1| two-component system response regulator [Streptomyces pristinaespiralis
ATCC 25486]
Length=247
Score = 337 bits (865), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 164/233 (71%), Positives = 191/233 (82%), Gaps = 0/233 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
M R DG PV VLVVDDE L+E++SMALRYEGW + +AGDG+ A+ R RPD VVLD+
Sbjct 14 MLRPDGSPVRVLVVDDEAPLSELLSMALRYEGWEVRSAGDGAGAVRTVREFRPDAVVLDI 73
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPDM GL VL +LR E P +PVL LTA+DAVEDRIAGLTAGGDDYVTKPFS+EEVV RL
Sbjct 74 MLPDMDGLAVLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARL 133
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
R L+RR+G V S + L VGDL LDEDSHEV R G+ + LT+TEFELLR++M N +RVL
Sbjct 134 RGLIRRSGTAAVRSESLLAVGDLTLDEDSHEVTRGGQSIHLTATEFELLRYLMRNPRRVL 193
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
SKAQILDRVWSYDFGG++N+VELYISYLR+KID GR PMIHT RGAGY++KP
Sbjct 194 SKAQILDRVWSYDFGGQANVVELYISYLRRKIDAGRPPMIHTRRGAGYLIKPG 246
>gi|111220170|ref|YP_710964.1| putative two-component system response regulator [Frankia alni
ACN14a]
gi|111147702|emb|CAJ59359.1| Putative two-component system response regulator (partial match)
[Frankia alni ACN14a]
Length=358
Score = 337 bits (865), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 164/228 (72%), Positives = 192/228 (85%), Gaps = 1/228 (0%)
Query 7 QPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVMLPDMS 66
QPV VLVVDDE LAE++SMALRYEGW + +AGDG A+ AR RPD VVLD+MLPDM
Sbjct 17 QPVRVLVVDDETTLAELLSMALRYEGWEVRSAGDGRGALRLAREFRPDAVVLDIMLPDMD 76
Query 67 GLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRR 126
GL+VL +LR+E+P +PVL LTA+DAVEDR+AGLTAGGDDYVTKPFS+EE+V RLR L+RR
Sbjct 77 GLEVLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRR 136
Query 127 TGVTT-VDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSKAQI 185
TT GA+LVVGDL +DE+S EV R G PV LT+TEFELLRF M N +RVLSKAQI
Sbjct 137 AARTTEALQGARLVVGDLTMDEESREVARGGVPVHLTATEFELLRFFMRNPRRVLSKAQI 196
Query 186 LDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
LDRVW+YDFGG++N+VELY+SYLRKKID GR PMIHT+RGAGYVL+PA
Sbjct 197 LDRVWNYDFGGQANVVELYVSYLRKKIDAGRPPMIHTMRGAGYVLRPA 244
>gi|326333582|ref|ZP_08199821.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium
Broad-1]
gi|325948598|gb|EGD40699.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium
Broad-1]
Length=244
Score = 337 bits (865), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 162/233 (70%), Positives = 193/233 (83%), Gaps = 0/233 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
+ R DG P+ VLVVDDE +AE++ MALRYEGW + A G+ A++AAR PD +VLD
Sbjct 11 LTRLDGSPLRVLVVDDEVNIAELIMMALRYEGWEVAAAHTGTKAVSAARDFTPDAIVLDW 70
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPD GL+VL ++RS NP +PVL LTAKDAVEDR+AGLTAGGDDYVTKPFS+EE+V RL
Sbjct 71 MLPDFDGLEVLRRVRSTNPAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARL 130
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
RAL+RR G T ++ + + VGDL +DEDS EV RAGE +SLT+TEFELLRF+M N +RVL
Sbjct 131 RALMRRAGATRIEEHSVIHVGDLTMDEDSREVRRAGEEISLTATEFELLRFLMRNPRRVL 190
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
SKAQILDRVWSYDFGG++N+VELYISYLRKKID GREPMIHT+RGAGYVLK A
Sbjct 191 SKAQILDRVWSYDFGGQANVVELYISYLRKKIDAGREPMIHTMRGAGYVLKAA 243
>gi|345000963|ref|YP_004803817.1| winged helix family two component transcriptional regulator [Streptomyces
sp. SirexAA-E]
gi|344316589|gb|AEN11277.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. SirexAA-E]
Length=246
Score = 337 bits (864), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 165/231 (72%), Positives = 191/231 (83%), Gaps = 0/231 (0%)
Query 3 RADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVML 62
R D PV VL+VDDE LAE++SMALRYEGW + +AGDG+ A+ AAR RPD V+LDVML
Sbjct 15 RPDRHPVRVLIVDDEAPLAELLSMALRYEGWEVRSAGDGAEALRAARDFRPDAVILDVML 74
Query 63 PDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRA 122
PDM GL VL +LR E P +PVL LTA+DAVEDRIAGLTAGGDDYVTKPFS+EEVV RLR
Sbjct 75 PDMDGLTVLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRG 134
Query 123 LLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSK 182
L+RR+G S + LVVGDLVLDEDSHEV R + + LT+TEFELLRF+M N +RVLSK
Sbjct 135 LIRRSGTAVARSESTLVVGDLVLDEDSHEVSRGDDSIHLTATEFELLRFLMRNPRRVLSK 194
Query 183 AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
AQILDRVW+YDFGG++N+VELYISYLRKKID GR PMIHT RGAGY++KP
Sbjct 195 AQILDRVWNYDFGGQANVVELYISYLRKKIDAGRSPMIHTRRGAGYLIKPG 245
>gi|297158650|gb|ADI08362.1| two-component system response regulator [Streptomyces bingchenggensis
BCW-1]
Length=245
Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 163/231 (71%), Positives = 192/231 (84%), Gaps = 0/231 (0%)
Query 3 RADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVML 62
R DG PV VLVVDDE LA+++SMALRYEGW + TAG+G+ A+ R RPD V+LD+ML
Sbjct 14 RPDGSPVRVLVVDDESALADLLSMALRYEGWEVRTAGNGAEALRITRELRPDAVLLDIML 73
Query 63 PDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRA 122
PDM GL +L ++R+E P +PVL LTAKDAVEDRIAGLTAGGDDYVTKPFS+EEVV RLR
Sbjct 74 PDMDGLTLLGRVRNELPEVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRG 133
Query 123 LLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSK 182
LLRR+G S + L VGDLVLDEDSHEV RAG+ + LT+TEFELLR++M N +RVLSK
Sbjct 134 LLRRSGAAAARSESLLTVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSK 193
Query 183 AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
AQILDRVWSYDFGG++N+VELYISYLR+KID GR PMIHT RGAGY++KP
Sbjct 194 AQILDRVWSYDFGGQANVVELYISYLRRKIDAGRSPMIHTRRGAGYLIKPG 244
>gi|159037874|ref|YP_001537127.1| two component transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157916709|gb|ABV98136.1| two component transcriptional regulator, winged helix family
[Salinispora arenicola CNS-205]
Length=248
Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 164/233 (71%), Positives = 194/233 (84%), Gaps = 1/233 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
+RR DGQPV VLVVDDEP L +++SMALRYEGW + TAG+G +A++ AR+ +PD VVLDV
Sbjct 14 LRRPDGQPVRVLVVDDEPTLTDLLSMALRYEGWQVRTAGNGMAALSTARQFQPDAVVLDV 73
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPD+ G VL +LR P +PVL LTA+DAVEDR+AGLT GGDDYVTKPFS+EEV+ RL
Sbjct 74 MLPDLDGFAVLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARL 133
Query 121 RALLRRTGVT-TVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRV 179
RALLRR+G A L VGDL LDEDSHEV R G+ ++LT+TEFELLR++M N +RV
Sbjct 134 RALLRRSGFAIAARHEAVLTVGDLSLDEDSHEVSRDGQLINLTATEFELLRYLMRNPRRV 193
Query 180 LSKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKP 232
LSKAQILDRVW+YDFGG++N+VELYISYLRKKID GR PMIHTLRGAGYVLKP
Sbjct 194 LSKAQILDRVWNYDFGGQANVVELYISYLRKKIDAGRAPMIHTLRGAGYVLKP 246
>gi|329938744|ref|ZP_08288140.1| two component system response regulator [Streptomyces griseoaurantiacus
M045]
gi|329302235|gb|EGG46127.1| two component system response regulator [Streptomyces griseoaurantiacus
M045]
Length=249
Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 166/231 (72%), Positives = 189/231 (82%), Gaps = 0/231 (0%)
Query 3 RADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVML 62
R DG PV VLVVDDE + E++SMALRYEGW I +AGDG A+ AAR RPD VVLD+ML
Sbjct 17 RPDGSPVRVLVVDDELSITELLSMALRYEGWRIRSAGDGQGAVRAAREFRPDAVVLDLML 76
Query 63 PDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRA 122
PDM GL L +LR E P +PVL LTAKDA EDRIAGLTAGGDDYVTKPF +E+VV RLR
Sbjct 77 PDMDGLSALGRLRRELPDVPVLFLTAKDAAEDRIAGLTAGGDDYVTKPFGVEDVVARLRG 136
Query 123 LLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSK 182
L+RR+G S A LVVGDL+LDEDSHEV R G + LT+TEFELLRF+M N +RVLSK
Sbjct 137 LIRRSGAADRRSDAVLVVGDLILDEDSHEVSRGGTDIHLTATEFELLRFLMRNPRRVLSK 196
Query 183 AQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
AQILDRVWSYDFGG++N+VELYISYLR+KID GREPMIHT RGAGY++KPA
Sbjct 197 AQILDRVWSYDFGGQANVVELYISYLRRKIDAGREPMIHTRRGAGYLIKPA 247
>gi|328883819|emb|CCA57058.1| putative two-component system response regulator [Streptomyces
venezuelae ATCC 10712]
Length=247
Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 163/233 (70%), Positives = 194/233 (84%), Gaps = 0/233 (0%)
Query 1 MRRADGQPVTVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDV 60
M RADG V VLVVDDE LAE++SMALRYEGW + +AGDG++A+ +AR RPD V+LD+
Sbjct 14 MLRADGTAVRVLVVDDEASLAELLSMALRYEGWQVRSAGDGAAALRSAREFRPDAVILDI 73
Query 61 MLPDMSGLDVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRL 120
MLPD+ GL +L ++R E P +PVL LTAKDAVEDRIAGLTAGGDDYVTKPFS+EEVV RL
Sbjct 74 MLPDVDGLSLLGRIRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARL 133
Query 121 RALLRRTGVTTVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVL 180
R L+RR+G S + LVVGDL LDEDSHEV R G+ + LT+TEFELLR++M N +RVL
Sbjct 134 RGLIRRSGAALARSESLLVVGDLTLDEDSHEVTRGGDSIHLTATEFELLRYLMRNPRRVL 193
Query 181 SKAQILDRVWSYDFGGRSNIVELYISYLRKKIDNGREPMIHTLRGAGYVLKPA 233
SKAQILDRVWSYDFGG++N+VELYISYLR+KID GR PMIHT RGAGY++KP
Sbjct 194 SKAQILDRVWSYDFGGQANVVELYISYLRRKIDAGRAPMIHTRRGAGYLIKPG 246
Lambda K H
0.320 0.137 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 313223274342
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40