BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3769

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610905|ref|NP_218286.1|  hypothetical protein Rv3769 [Mycoba...   175    2e-42
gi|306778661|ref|ZP_07416998.1|  hypothetical protein TMBG_02307 ...   173    8e-42
gi|289441205|ref|ZP_06430949.1|  LOW QUALITY PROTEIN: conserved h...  94.4    5e-18
gi|289759938|ref|ZP_06519316.1|  predicted protein [Mycobacterium...  82.8    1e-14
gi|145224255|ref|YP_001134933.1|  hypothetical protein Mflv_3671 ...  67.0    8e-10
gi|240170024|ref|ZP_04748683.1|  hypothetical protein MkanA1_1197...  64.7    5e-09
gi|289572016|ref|ZP_06452243.1|  hypothetical protein TBJG_02904 ...  59.3    2e-07
gi|183984927|ref|YP_001853218.1|  hypothetical protein MMAR_4959 ...  50.1    1e-04
gi|321444297|gb|EFX60363.1|  hypothetical protein DAPPUDRAFT_7199...  36.2    1.7  
gi|321465406|gb|EFX76407.1|  hypothetical protein DAPPUDRAFT_1885...  35.8    2.1  
gi|260814598|ref|XP_002602001.1|  hypothetical protein BRAFLDRAFT...  35.8    2.3  
gi|49119498|gb|AAH73619.1|  Eps15R protein [Xenopus laevis]           35.8    2.3  
gi|148231027|ref|NP_001084490.1|  epidermal growth factor recepto...  35.0    3.4  
gi|260787745|ref|XP_002588912.1|  hypothetical protein BRAFLDRAFT...  34.3    5.9  
gi|45185571|ref|NP_983287.1|  ACL117Wp [Ashbya gossypii ATCC 1089...  34.3    6.2  
gi|189230039|ref|NP_001121513.1|  epidermal growth factor recepto...  33.9    8.1  


>gi|15610905|ref|NP_218286.1| hypothetical protein Rv3769 [Mycobacterium tuberculosis H37Rv]
 gi|31794939|ref|NP_857432.1| hypothetical protein Mb3795 [Mycobacterium bovis AF2122/97]
 gi|121639683|ref|YP_979907.1| hypothetical protein BCG_3828 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 53 more sequence titles
 Length=90

 Score =  175 bits (444),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 89/90 (99%), Positives = 90/90 (100%), Gaps = 0/90 (0%)

Query  1   VTTLKELGARVAALEANQADYRAVLAAVNPPGANQREIATTVREHTGRLDRVTTKVGQLA  60
           +TTLKELGARVAALEANQADYRAVLAAVNPPGANQREIATTVREHTGRLDRVTTKVGQLA
Sbjct  1   MTTLKELGARVAALEANQADYRAVLAAVNPPGANQREIATTVREHTGRLDRVTTKVGQLA  60

Query  61  AKSDDTNARVRSLEEGQAEIKDLLLRALDK  90
           AKSDDTNARVRSLEEGQAEIKDLLLRALDK
Sbjct  61  AKSDDTNARVRSLEEGQAEIKDLLLRALDK  90


>gi|306778661|ref|ZP_07416998.1| hypothetical protein TMBG_02307 [Mycobacterium tuberculosis SUMu002]
 gi|306791050|ref|ZP_07429372.1| hypothetical protein TMDG_01505 [Mycobacterium tuberculosis SUMu004]
 gi|306791369|ref|ZP_07429671.1| hypothetical protein TMEG_00264 [Mycobacterium tuberculosis SUMu005]
 gi|308328384|gb|EFP17235.1| hypothetical protein TMBG_02307 [Mycobacterium tuberculosis SUMu002]
 gi|308332631|gb|EFP21482.1| hypothetical protein TMDG_01505 [Mycobacterium tuberculosis SUMu004]
 gi|308340122|gb|EFP28973.1| hypothetical protein TMEG_00264 [Mycobacterium tuberculosis SUMu005]
Length=90

 Score =  173 bits (438),  Expect = 8e-42, Method: Compositional matrix adjust.
 Identities = 88/90 (98%), Positives = 90/90 (100%), Gaps = 0/90 (0%)

Query  1   VTTLKELGARVAALEANQADYRAVLAAVNPPGANQREIATTVREHTGRLDRVTTKVGQLA  60
           +TTLKELGARVAALEANQADYRAVLAAVNPPGANQREIATTVRE+TGRLDRVTTKVGQLA
Sbjct  1   MTTLKELGARVAALEANQADYRAVLAAVNPPGANQREIATTVREYTGRLDRVTTKVGQLA  60

Query  61  AKSDDTNARVRSLEEGQAEIKDLLLRALDK  90
           AKSDDTNARVRSLEEGQAEIKDLLLRALDK
Sbjct  61  AKSDDTNARVRSLEEGQAEIKDLLLRALDK  90


>gi|289441205|ref|ZP_06430949.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis T46]
 gi|289414124|gb|EFD11364.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium 
tuberculosis T46]
Length=91

 Score = 94.4 bits (233),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 46/47 (98%), Positives = 47/47 (100%), Gaps = 0/47 (0%)

Query  1   VTTLKELGARVAALEANQADYRAVLAAVNPPGANQREIATTVREHTG  47
           +TTLKELGARVAALEANQADYRAVLAAVNPPGANQREIATTVREHTG
Sbjct  1   MTTLKELGARVAALEANQADYRAVLAAVNPPGANQREIATTVREHTG  47


>gi|289759938|ref|ZP_06519316.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|289715502|gb|EFD79514.1| predicted protein [Mycobacterium tuberculosis T85]
Length=109

 Score = 82.8 bits (203),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 41/46 (90%), Positives = 43/46 (94%), Gaps = 0/46 (0%)

Query  38  IATTVREHTGRLDRVTTKVGQLAAKSDDTNARVRSLEEGQAEIKDL  83
           IATTVR+ +GRLDRVTTKVGQL AKSDDTNARVRSLEEGQ EIKDL
Sbjct  41  IATTVRKQSGRLDRVTTKVGQLVAKSDDTNARVRSLEEGQDEIKDL  86


>gi|145224255|ref|YP_001134933.1| hypothetical protein Mflv_3671 [Mycobacterium gilvum PYR-GCK]
 gi|315444590|ref|YP_004077469.1| hypothetical protein Mspyr1_30170 [Mycobacterium sp. Spyr1]
 gi|145216741|gb|ABP46145.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
 gi|315262893|gb|ADT99634.1| hypothetical protein Mspyr1_30170 [Mycobacterium sp. Spyr1]
Length=93

 Score = 67.0 bits (162),  Expect = 8e-10, Method: Compositional matrix adjust.
 Identities = 40/87 (46%), Positives = 58/87 (67%), Gaps = 4/87 (4%)

Query  4   LKELGARVAALEANQADYRAVLAAVNPPGANQREIATTVREHTGRL----DRVTTKVGQL  59
           L +  AR++ALEA+ ADYRAVLAA+N  GAN+R+  T +     RL    +R+ +   +L
Sbjct  2   LDDHEARISALEASHADYRAVLAAINALGANERDHVTRLTSVDNRLIAVDNRLISVETEL  61

Query  60  AAKSDDTNARVRSLEEGQAEIKDLLLR  86
           A    +T AR+RS++E  AEIKDL++R
Sbjct  62  ADFRQETRARLRSVDEHLAEIKDLIIR  88


>gi|240170024|ref|ZP_04748683.1| hypothetical protein MkanA1_11976 [Mycobacterium kansasii ATCC 
12478]
Length=87

 Score = 64.7 bits (156),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 37/87 (43%), Positives = 55/87 (64%), Gaps = 10/87 (11%)

Query  4   LKELGARVAALEANQADYRAVLAAVNPPGANQREIATTVREHTGRLDRVTTKVGQLAAKS  63
           L  L ARVAA+E +QADYR+++ A+   G  Q+ +A  +R +           G++ A +
Sbjct  11  LANLKARVAAVERSQADYRSMVEAIKAFGETQQLLADVLRGY----------AGEMRATA  60

Query  64  DDTNARVRSLEEGQAEIKDLLLRALDK  90
           DD+N R+RSLE   AEIK+LL RAL++
Sbjct  61  DDSNQRIRSLETSTAEIKNLLTRALER  87


>gi|289572016|ref|ZP_06452243.1| hypothetical protein TBJG_02904 [Mycobacterium tuberculosis T17]
 gi|289545770|gb|EFD49418.1| hypothetical protein TBJG_02904 [Mycobacterium tuberculosis T17]
Length=31

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 29/31 (94%), Positives = 30/31 (97%), Gaps = 0/31 (0%)

Query  1   VTTLKELGARVAALEANQADYRAVLAAVNPP  31
           +TTLKELGARVAALEAN ADYRAVLAAVNPP
Sbjct  1   MTTLKELGARVAALEANPADYRAVLAAVNPP  31


>gi|183984927|ref|YP_001853218.1| hypothetical protein MMAR_4959 [Mycobacterium marinum M]
 gi|183178253|gb|ACC43363.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=87

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 28/83 (34%), Positives = 47/83 (57%), Gaps = 10/83 (12%)

Query  2   TTLKELGARVAALEANQADYRAVLAAVNPPGANQREIATTVREHTGRLDRVTTKVGQLAA  61
           +TL++L AR+AALEA++  Y  ++ A+   G  Q+ +A  +R +           G +  
Sbjct  12  STLRDLKARIAALEASRTSYEEIVDAIKAFGQTQQMLADVLRAYG----------GDMRG  61

Query  62  KSDDTNARVRSLEEGQAEIKDLL  84
            ++D+N R+R LE   AEIK +L
Sbjct  62  TAEDSNERIRKLEASVAEIKKML  84


>gi|321444297|gb|EFX60363.1| hypothetical protein DAPPUDRAFT_71996 [Daphnia pulex]
Length=156

 Score = 36.2 bits (82),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 16/33 (49%), Positives = 23/33 (70%), Gaps = 0/33 (0%)

Query  43  REHTGRLDRVTTKVGQLAAKSDDTNARVRSLEE  75
           REH  R++ + T V QL AK++DT  R+R LE+
Sbjct  65  REHHTRVNELETHVHQLRAKNEDTTKRIRQLEQ  97


>gi|321465406|gb|EFX76407.1| hypothetical protein DAPPUDRAFT_188557 [Daphnia pulex]
Length=307

 Score = 35.8 bits (81),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 16/33 (49%), Positives = 23/33 (70%), Gaps = 0/33 (0%)

Query  43   REHTGRLDRVTTKVGQLAAKSDDTNARVRSLEE  75
            REH  R++ + T V QL AK++DT  R+R LE+
Sbjct  88   REHHTRVNELETHVHQLRAKNEDTTKRIRQLEQ  120


>gi|260814598|ref|XP_002602001.1| hypothetical protein BRAFLDRAFT_82587 [Branchiostoma floridae]
 gi|229287306|gb|EEN58013.1| hypothetical protein BRAFLDRAFT_82587 [Branchiostoma floridae]
Length=1201

 Score = 35.8 bits (81),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 27/80 (34%), Positives = 41/80 (52%), Gaps = 0/80 (0%)

Query  4    LKELGARVAALEANQADYRAVLAAVNPPGANQREIATTVREHTGRLDRVTTKVGQLAAKS  63
            L ++ A V AL+  Q D R + A V+    +Q ++ TTV       D V+  V  LA   
Sbjct  367  LDDMSATVNALKRGQDDIRRLSATVDALKRDQDKMYTTVGTLKRDQDDVSATVDALAGDL  426

Query  64   DDTNARVRSLEEGQAEIKDL  83
            DD +  V +L+ GQ +I+ L
Sbjct  427  DDMSTTVNALKRGQDDIRRL  446


>gi|49119498|gb|AAH73619.1| Eps15R protein [Xenopus laevis]
Length=850

 Score = 35.8 bits (81),  Expect = 2.3, Method: Composition-based stats.
 Identities = 25/88 (29%), Positives = 45/88 (52%), Gaps = 11/88 (12%)

Query  1    VTTLKELGARVAALE----ANQADYRAVLAAVNPPGANQREIATTVREHTGRLDRVTTKV  56
            V  L E+   +A L+    A + D R    A+       R+ +T V+E    LDR T+ +
Sbjct  382  VKELDEISQEIAQLQREKYALEQDIREKEEAI-------RQKSTEVQELQNDLDRETSTL  434

Query  57   GQLAAKSDDTNARVRSLEEGQAEIKDLL  84
             +L A+  D   R+  +++ +A++KD+L
Sbjct  435  QELEAQKQDAQDRLDEMDQQKAKLKDML  462


>gi|148231027|ref|NP_001084490.1| epidermal growth factor receptor pathway substrate 15-like 1 
[Xenopus laevis]
 gi|32364687|gb|AAP80383.1| EH domain protein [Xenopus laevis]
Length=897

 Score = 35.0 bits (79),  Expect = 3.4, Method: Composition-based stats.
 Identities = 25/88 (29%), Positives = 45/88 (52%), Gaps = 11/88 (12%)

Query  1    VTTLKELGARVAALE----ANQADYRAVLAAVNPPGANQREIATTVREHTGRLDRVTTKV  56
            V  L E+   +A L+    A + D R    A+       R+ +T V+E    LDR T+ +
Sbjct  382  VKELDEISQEIAQLQREKYALEQDIREKEEAI-------RQKSTEVQELQNDLDRETSTL  434

Query  57   GQLAAKSDDTNARVRSLEEGQAEIKDLL  84
             +L A+  D   R+  +++ +A++KD+L
Sbjct  435  QELEAQKQDAQDRLDEMDQQKAKLKDML  462


>gi|260787745|ref|XP_002588912.1| hypothetical protein BRAFLDRAFT_89100 [Branchiostoma floridae]
 gi|229274084|gb|EEN44923.1| hypothetical protein BRAFLDRAFT_89100 [Branchiostoma floridae]
Length=833

 Score = 34.3 bits (77),  Expect = 5.9, Method: Compositional matrix adjust.
 Identities = 27/89 (31%), Positives = 45/89 (51%), Gaps = 3/89 (3%)

Query  4    LKELGARVAALEANQADYRAVLAAVNPPGANQREIATTVREHTGRLDRVTTKVGQLAAKS  63
            +++L   V AL+ +Q D R + A V+    +Q +++TTV       D  +T V  L    
Sbjct  303  MRQLSTTVDALKRDQDDMRHLSATVDALKRDQDDMSTTVDALKRDQDDTSTTVDALKRDQ  362

Query  64   DDTNARVRSLEEGQAEIK---DLLLRALD  89
            DD +  V +L+  Q ++    D+L R LD
Sbjct  363  DDMSTTVDALKRDQDDMSTTVDVLKRDLD  391


>gi|45185571|ref|NP_983287.1| ACL117Wp [Ashbya gossypii ATCC 10895]
 gi|44981289|gb|AAS51111.1| ACL117Wp [Ashbya gossypii ATCC 10895]
Length=581

 Score = 34.3 bits (77),  Expect = 6.2, Method: Composition-based stats.
 Identities = 29/79 (37%), Positives = 37/79 (47%), Gaps = 6/79 (7%)

Query  3    TLKELGARVAALEANQADYRAVLAAVNPPGANQREIATTVREHTGRLDRVTTKVGQL---  59
            TLKE  A+ A L   Q   R V   +NP G  Q  I        G + ++T K G     
Sbjct  368  TLKERAAKTAPLPEGQDIIRPVSQPLNPRGHLQ--ILYGSLAPGGAVGKITGKEGTFFQG  425

Query  60   -AAKSDDTNARVRSLEEGQ  77
             A   D+ NA +R+LEEGQ
Sbjct  426  RARVFDEENAFIRALEEGQ  444


>gi|189230039|ref|NP_001121513.1| epidermal growth factor receptor pathway substrate 15-like 1 
[Xenopus (Silurana) tropicalis]
 gi|183985776|gb|AAI66356.1| LOC100158630 protein [Xenopus (Silurana) tropicalis]
Length=898

 Score = 33.9 bits (76),  Expect = 8.1, Method: Composition-based stats.
 Identities = 24/88 (28%), Positives = 45/88 (52%), Gaps = 11/88 (12%)

Query  1    VTTLKELGARVAALE----ANQADYRAVLAAVNPPGANQREIATTVREHTGRLDRVTTKV  56
            V  L E+   +A L+    A + D R    A+       R+ +T V++    LDR T+ +
Sbjct  382  VKELDEISQEIAQLQREKYALEQDIREKEEAI-------RQKSTEVQDLQNDLDRETSTL  434

Query  57   GQLAAKSDDTNARVRSLEEGQAEIKDLL  84
             +L A+  D   R+  +++ +A++KD+L
Sbjct  435  QELEAQKQDAQDRLDEMDQQKAKLKDML  462



Lambda     K      H
   0.312    0.127    0.329 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129182109240


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40