BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3770B

Length=63
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15843393|ref|NP_338430.1|  hypothetical protein MT3879 [Mycoba...   125    2e-27
gi|15609949|ref|NP_217328.1|  transposase [Mycobacterium tubercul...   117    5e-25
gi|289575511|ref|ZP_06455738.1|  transposase [Mycobacterium tuber...   117    6e-25
gi|15842348|ref|NP_337385.1|  IS1604 transposase [Mycobacterium t...   117    6e-25
gi|289762987|ref|ZP_06522365.1|  transposase [Mycobacterium tuber...   116    9e-25
gi|31793987|ref|NP_856480.1|  transposase [Mycobacterium bovis AF...   116    9e-25
gi|308369867|ref|ZP_07419332.2|  transposase [Mycobacterium tuber...   116    1e-24
gi|308232251|ref|ZP_07415431.2|  transposase [Mycobacterium tuber...   116    1e-24
gi|296169409|ref|ZP_06851031.1|  IS1604 transposase [Mycobacteriu...   114    4e-24
gi|289758936|ref|ZP_06518314.1|  transposase [Mycobacterium tuber...  99.8    1e-19
gi|111026943|ref|YP_708921.1|  transposase [Rhodococcus jostii RH...  88.2    4e-16
gi|226334812|ref|YP_002784484.1|  putative transposase [Rhodococc...  85.9    2e-15
gi|145226041|ref|YP_001136695.1|  integrase catalytic subunit [My...  82.8    2e-14
gi|120401573|ref|YP_951402.1|  putative transposase [Mycobacteriu...  80.5    9e-14
gi|120401589|ref|YP_951418.1|  integrase catalytic subunit [Mycob...  79.7    1e-13
gi|119854966|ref|YP_935571.1|  integrase catalytic subunit [Mycob...  78.6    3e-13
gi|315441535|ref|YP_004074412.1|  Mu transposase/integrase [Mycob...  78.6    3e-13
gi|258653876|ref|YP_003203032.1|  Integrase catalytic subunit [Na...  73.9    6e-12
gi|258651521|ref|YP_003200677.1|  Integrase catalytic subunit [Na...  73.9    7e-12
gi|258655052|ref|YP_003204208.1|  Integrase catalytic subunit [Na...  72.8    1e-11
gi|336117533|ref|YP_004572301.1|  putative transposase [Microluna...  65.5    3e-09
gi|308375475|ref|ZP_07444053.2|  transposase [Mycobacterium tuber...  62.0    3e-08
gi|289758935|ref|ZP_06518313.1|  predicted protein [Mycobacterium...  56.6    1e-06
gi|301063298|ref|ZP_07203843.1|  conserved hypothetical protein [...  37.7    0.64 
gi|90423076|ref|YP_531446.1|  hypothetical protein RPC_1565 [Rhod...  36.6    1.4  
gi|51893858|ref|YP_076549.1|  transposase [Symbiobacterium thermo...  35.8    2.2  
gi|51893403|ref|YP_076094.1|  transposase [Symbiobacterium thermo...  35.8    2.3  
gi|51891187|ref|YP_073878.1|  hypothetical protein STH49 [Symbiob...  35.8    2.4  
gi|296132015|ref|YP_003639262.1|  Integrase catalytic region [The...  35.4    3.2  
gi|39936914|ref|NP_949190.1|  hypothetical protein RPA3853 [Rhodo...  35.4    3.2  
gi|148263178|ref|YP_001229884.1|  integrase catalytic subunit [Ge...  33.9    8.1  
gi|323702274|ref|ZP_08113940.1|  Integrase catalytic region [Desu...  33.9    9.4  


>gi|15843393|ref|NP_338430.1| hypothetical protein MT3879 [Mycobacterium tuberculosis CDC1551]
 gi|31794942|ref|NP_857435.1| hypothetical protein Mb3798c [Mycobacterium bovis AF2122/97]
 gi|57117154|ref|YP_178013.1| hypothetical protein Rv3770B [Mycobacterium tuberculosis H37Rv]
 76 more sequence titles
 Length=63

 Score =  125 bits (315),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 62/63 (99%), Positives = 63/63 (100%), Gaps = 0/63 (0%)

Query  1   VRAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRW  60
           +RAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRW
Sbjct  1   MRAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRW  60

Query  61  IRN  63
           IRN
Sbjct  61  IRN  63


>gi|15609949|ref|NP_217328.1| transposase [Mycobacterium tuberculosis H37Rv]
 gi|148662654|ref|YP_001284177.1| putative transposase [Mycobacterium tuberculosis H37Ra]
 gi|167967615|ref|ZP_02549892.1| putative transposase [Mycobacterium tuberculosis H37Ra]
 gi|307085512|ref|ZP_07494625.1| transposase [Mycobacterium tuberculosis SUMu012]
 gi|1648909|emb|CAB03635.1| PROBABLE TRANSPOSASE [Mycobacterium tuberculosis H37Rv]
 gi|148506806|gb|ABQ74615.1| putative transposase [Mycobacterium tuberculosis H37Ra]
 gi|308364957|gb|EFP53808.1| transposase [Mycobacterium tuberculosis SUMu012]
Length=469

 Score =  117 bits (293),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 58/63 (93%), Positives = 60/63 (96%), Gaps = 0/63 (0%)

Query  1   VRAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRW  60
           VRAERARAIGLFRYQLI EAADAAHSTK+RGKMVRELASREHTDPFGR+VRISR TIDRW
Sbjct  10  VRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW  69

Query  61  IRN  63
           IR 
Sbjct  70  IRG  72


>gi|289575511|ref|ZP_06455738.1| transposase [Mycobacterium tuberculosis K85]
 gi|339632823|ref|YP_004724465.1| transposase [Mycobacterium africanum GM041182]
 gi|289539942|gb|EFD44520.1| transposase [Mycobacterium tuberculosis K85]
 gi|339332179|emb|CCC27887.1| putative transposase [Mycobacterium africanum GM041182]
Length=469

 Score =  117 bits (293),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 58/63 (93%), Positives = 60/63 (96%), Gaps = 0/63 (0%)

Query  1   VRAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRW  60
           VRAERARAIGLFRYQLI EAADAAHSTK+RGKMVRELASREHTDPFGR+VRISR TIDRW
Sbjct  10  VRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW  69

Query  61  IRN  63
           IR 
Sbjct  70  IRG  72


>gi|15842348|ref|NP_337385.1| IS1604 transposase [Mycobacterium tuberculosis CDC1551]
 gi|121638691|ref|YP_978915.1| putative transposase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148824001|ref|YP_001288755.1| transposase [Mycobacterium tuberculosis F11]
 43 more sequence titles
 Length=469

 Score =  117 bits (293),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 58/63 (93%), Positives = 60/63 (96%), Gaps = 0/63 (0%)

Query  1   VRAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRW  60
           VRAERARAIGLFRYQLI EAADAAHSTK+RGKMVRELASREHTDPFGR+VRISR TIDRW
Sbjct  10  VRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW  69

Query  61  IRN  63
           IR 
Sbjct  70  IRG  72


>gi|289762987|ref|ZP_06522365.1| transposase [Mycobacterium tuberculosis GM 1503]
 gi|289710493|gb|EFD74509.1| transposase [Mycobacterium tuberculosis GM 1503]
Length=290

 Score =  116 bits (291),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 58/63 (93%), Positives = 60/63 (96%), Gaps = 0/63 (0%)

Query  1   VRAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRW  60
           VRAERARAIGLFRYQLI EAADAAHSTK+RGKMVRELASREHTDPFGR+VRISR TIDRW
Sbjct  10  VRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW  69

Query  61  IRN  63
           IR 
Sbjct  70  IRG  72


>gi|31793987|ref|NP_856480.1| transposase [Mycobacterium bovis AF2122/97]
 gi|31619581|emb|CAD95020.1| PUTATIVE TRANSPOSASE [FIRST PART] [Mycobacterium bovis AF2122/97]
Length=226

 Score =  116 bits (291),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 58/63 (93%), Positives = 60/63 (96%), Gaps = 0/63 (0%)

Query  1   VRAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRW  60
           VRAERARAIGLFRYQLI EAADAAHSTK+RGKMVRELASREHTDPFGR+VRISR TIDRW
Sbjct  10  VRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW  69

Query  61  IRN  63
           IR 
Sbjct  70  IRG  72


>gi|308369867|ref|ZP_07419332.2| transposase [Mycobacterium tuberculosis SUMu002]
 gi|308371137|ref|ZP_07423947.2| transposase [Mycobacterium tuberculosis SUMu003]
 gi|308374697|ref|ZP_07437023.2| transposase [Mycobacterium tuberculosis SUMu006]
 7 more sequence titles
 Length=460

 Score =  116 bits (290),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 57/63 (91%), Positives = 60/63 (96%), Gaps = 0/63 (0%)

Query  1   VRAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRW  60
           +RAERARAIGLFRYQLI EAADAAHSTK+RGKMVRELASREHTDPFGR+VRISR TIDRW
Sbjct  1   MRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW  60

Query  61  IRN  63
           IR 
Sbjct  61  IRG  63


>gi|308232251|ref|ZP_07415431.2| transposase [Mycobacterium tuberculosis SUMu001]
 gi|308379326|ref|ZP_07485870.2| transposase [Mycobacterium tuberculosis SUMu010]
 gi|308380479|ref|ZP_07490088.2| transposase [Mycobacterium tuberculosis SUMu011]
 gi|308214601|gb|EFO74000.1| transposase [Mycobacterium tuberculosis SUMu001]
 gi|308357470|gb|EFP46321.1| transposase [Mycobacterium tuberculosis SUMu010]
 gi|308361419|gb|EFP50270.1| transposase [Mycobacterium tuberculosis SUMu011]
Length=460

 Score =  116 bits (290),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 57/63 (91%), Positives = 60/63 (96%), Gaps = 0/63 (0%)

Query  1   VRAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRW  60
           +RAERARAIGLFRYQLI EAADAAHSTK+RGKMVRELASREHTDPFGR+VRISR TIDRW
Sbjct  1   MRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW  60

Query  61  IRN  63
           IR 
Sbjct  61  IRG  63


>gi|296169409|ref|ZP_06851031.1| IS1604 transposase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895911|gb|EFG75604.1| IS1604 transposase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=468

 Score =  114 bits (286),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 56/63 (89%), Positives = 60/63 (96%), Gaps = 0/63 (0%)

Query  1   VRAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRW  60
           VRAERAR IGLFRYQLIREAA+ AHSTKERGK+VRELASREHTDPFGR+VRISR TIDRW
Sbjct  10  VRAERARVIGLFRYQLIREAAEPAHSTKERGKIVRELASREHTDPFGRRVRISRQTIDRW  69

Query  61  IRN  63
           IR+
Sbjct  70  IRD  72


>gi|289758936|ref|ZP_06518314.1| transposase [Mycobacterium tuberculosis T85]
 gi|289714500|gb|EFD78512.1| transposase [Mycobacterium tuberculosis T85]
Length=460

 Score = 99.8 bits (247),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 50/63 (80%), Positives = 54/63 (86%), Gaps = 0/63 (0%)

Query  1   VRAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRW  60
           +RAE      +FRYQLI EAADAAHSTK+RGKMVRELASREHTDPFGR+VRISR TIDRW
Sbjct  1   MRAEAREGDRVFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW  60

Query  61  IRN  63
           IR 
Sbjct  61  IRG  63


>gi|111026943|ref|YP_708921.1| transposase [Rhodococcus jostii RHA1]
 gi|110825482|gb|ABH00763.1| probable transposase [Rhodococcus jostii RHA1]
Length=490

 Score = 88.2 bits (217),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 42/61 (69%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  2   RAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWI  61
           R ER+ A+GLFRYQLI  A DA  STK RG++VRE+ASR+HTDPFG +VR SR T+DRWI
Sbjct  8   RRERSHAVGLFRYQLICPALDAGLSTKARGRLVREIASRQHTDPFGTRVRYSRDTLDRWI  67

Query  62  R  62
           R
Sbjct  68  R  68


>gi|226334812|ref|YP_002784484.1| putative transposase [Rhodococcus opacus B4]
 gi|226246032|dbj|BAH56132.1| putative transposase [Rhodococcus opacus B4]
Length=493

 Score = 85.9 bits (211),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 41/61 (68%), Positives = 49/61 (81%), Gaps = 0/61 (0%)

Query  2   RAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWI  61
           R ERA+AIGLFRY+LI  A D   STK+RGK+VRE+A+  H DPFG +VRISR T+DRWI
Sbjct  8   RRERAQAIGLFRYRLICPALDEGLSTKQRGKLVREIAAEPHADPFGNQVRISRETLDRWI  67

Query  62  R  62
           R
Sbjct  68  R  68


>gi|145226041|ref|YP_001136695.1| integrase catalytic subunit [Mycobacterium gilvum PYR-GCK]
 gi|145218504|gb|ABP47907.1| Integrase, catalytic region [Mycobacterium gilvum PYR-GCK]
Length=522

 Score = 82.8 bits (203),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 39/61 (64%), Positives = 49/61 (81%), Gaps = 0/61 (0%)

Query  2   RAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWI  61
           R ERA+AIGLFRYQLI  A +   STK+RGK+VRE+A R H DPFG +V+++R T+DRWI
Sbjct  35  RRERAQAIGLFRYQLICPALEQGLSTKQRGKLVREIADRRHIDPFGAQVQVARATLDRWI  94

Query  62  R  62
           R
Sbjct  95  R  95


>gi|120401573|ref|YP_951402.1| putative transposase [Mycobacterium vanbaalenii PYR-1]
 gi|119954391|gb|ABM11396.1| putative transposase [Mycobacterium vanbaalenii PYR-1]
Length=97

 Score = 80.5 bits (197),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 38/61 (63%), Positives = 48/61 (79%), Gaps = 0/61 (0%)

Query  2   RAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWI  61
           R ERA AIGLFRYQLI  A +   ST++RG++VRE+A R H DPFG +V+I+R T+DRWI
Sbjct  8   RRERANAIGLFRYQLICPALEDGLSTRQRGRLVREIAERRHIDPFGTQVQIARATLDRWI  67

Query  62  R  62
           R
Sbjct  68  R  68


>gi|120401589|ref|YP_951418.1| integrase catalytic subunit [Mycobacterium vanbaalenii PYR-1]
 gi|120402693|ref|YP_952522.1| integrase catalytic subunit [Mycobacterium vanbaalenii PYR-1]
 gi|120403490|ref|YP_953319.1| integrase catalytic subunit [Mycobacterium vanbaalenii PYR-1]
 gi|120403911|ref|YP_953740.1| integrase catalytic subunit [Mycobacterium vanbaalenii PYR-1]
 gi|119954407|gb|ABM11412.1| Integrase, catalytic region [Mycobacterium vanbaalenii PYR-1]
 gi|119955511|gb|ABM12516.1| Integrase, catalytic region [Mycobacterium vanbaalenii PYR-1]
 gi|119956308|gb|ABM13313.1| Integrase, catalytic region [Mycobacterium vanbaalenii PYR-1]
 gi|119956729|gb|ABM13734.1| Integrase, catalytic region [Mycobacterium vanbaalenii PYR-1]
Length=499

 Score = 79.7 bits (195),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 38/61 (63%), Positives = 48/61 (79%), Gaps = 0/61 (0%)

Query  2   RAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWI  61
           R ERA AIGLFRYQLI  A +   ST++RG++VRE+A R H DPFG +V+I+R T+DRWI
Sbjct  8   RRERANAIGLFRYQLICPALEDGLSTRQRGRLVREIAERRHIDPFGTQVQIARATLDRWI  67

Query  62  R  62
           R
Sbjct  68  R  68


>gi|119854966|ref|YP_935571.1| integrase catalytic subunit [Mycobacterium sp. KMS]
 gi|119697684|gb|ABL94756.1| Integrase, catalytic region [Mycobacterium sp. KMS]
Length=510

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 37/61 (61%), Positives = 48/61 (79%), Gaps = 0/61 (0%)

Query  2   RAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWI  61
           R ERA AIGLFRYQ+I  A +   ST++RG++VRE+A R H DPFG +V+I+R T+DRWI
Sbjct  32  RRERANAIGLFRYQVICPALEEGLSTRQRGRVVREIAGRRHIDPFGTQVQIARATLDRWI  91

Query  62  R  62
           R
Sbjct  92  R  92


>gi|315441535|ref|YP_004074412.1| Mu transposase/integrase [Mycobacterium sp. Spyr1]
 gi|315444101|ref|YP_004076980.1| Mu transposase/integrase [Mycobacterium sp. Spyr1]
 gi|315445643|ref|YP_004078522.1| Mu transposase/integrase [Mycobacterium sp. Spyr1]
 gi|315446300|ref|YP_004079179.1| Mu transposase/integrase [Mycobacterium sp. Spyr1]
 gi|315262404|gb|ADT99145.1| Mu transposase/integrase [Mycobacterium sp. Spyr1]
 gi|315263946|gb|ADU00688.1| Mu transposase/integrase [Mycobacterium sp. Spyr1]
 gi|315264603|gb|ADU01345.1| Mu transposase/integrase [Mycobacterium sp. Spyr1]
 gi|315265190|gb|ADU01931.1| Mu transposase/integrase [Mycobacterium sp. Spyr1]
Length=486

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 37/61 (61%), Positives = 48/61 (79%), Gaps = 0/61 (0%)

Query  2   RAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWI  61
           R ERA AIGLFRYQ+I  A +   ST++RG++VRE+A R H DPFG +V+I+R T+DRWI
Sbjct  8   RRERANAIGLFRYQVICPALEEGLSTRQRGRVVREIAGRRHIDPFGTQVQIARATLDRWI  67

Query  62  R  62
           R
Sbjct  68  R  68


>gi|258653876|ref|YP_003203032.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
 gi|258557101|gb|ACV80043.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
Length=495

 Score = 73.9 bits (180),  Expect = 6e-12, Method: Compositional matrix adjust.
 Identities = 35/59 (60%), Positives = 44/59 (75%), Gaps = 0/59 (0%)

Query  4   ERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWIR  62
           ERA+ I LFRYQLI  A +   STK+RG++VR +A REH  PFG +VR SR ++DRWIR
Sbjct  10  ERAQQIALFRYQLICPALEPGLSTKQRGRVVRAIADREHDGPFGGRVRYSRESLDRWIR  68


>gi|258651521|ref|YP_003200677.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
 gi|258654632|ref|YP_003203788.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
 gi|258554746|gb|ACV77688.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
 gi|258557857|gb|ACV80799.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
Length=493

 Score = 73.9 bits (180),  Expect = 7e-12, Method: Compositional matrix adjust.
 Identities = 35/59 (60%), Positives = 44/59 (75%), Gaps = 0/59 (0%)

Query  4   ERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWIR  62
           ERA+ I LFRYQLI  A +   STK+RG++VR +A REH  PFG +VR SR ++DRWIR
Sbjct  10  ERAQQIALFRYQLICPALEPGLSTKQRGRVVRAIADREHDGPFGGRVRYSRESLDRWIR  68


>gi|258655052|ref|YP_003204208.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
 gi|258558277|gb|ACV81219.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
Length=489

 Score = 72.8 bits (177),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 34/59 (58%), Positives = 44/59 (75%), Gaps = 0/59 (0%)

Query  4   ERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWIR  62
           ERA+ I LFRYQLI  A +   STK+RG++VR +A R+H  PFG +VR SR ++DRWIR
Sbjct  10  ERAQQIALFRYQLICPALEPGLSTKQRGRIVRAIADRDHDGPFGGRVRYSRESLDRWIR  68


>gi|336117533|ref|YP_004572301.1| putative transposase [Microlunatus phosphovorus NM-1]
 gi|334685313|dbj|BAK34898.1| putative transposase [Microlunatus phosphovorus NM-1]
Length=471

 Score = 65.5 bits (158),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 42/61 (69%), Gaps = 0/61 (0%)

Query  2   RAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWI  61
           R ERA+ + L+RYQLI  A D   STK RG++VR +A+R H  PFG +   SR ++DRWI
Sbjct  11  RRERAQQVALWRYQLICPALDPELSTKARGRIVRTIAARTHAGPFGGQHSYSRDSLDRWI  70

Query  62  R  62
           R
Sbjct  71  R  71


>gi|308375475|ref|ZP_07444053.2| transposase [Mycobacterium tuberculosis SUMu007]
 gi|308346188|gb|EFP35039.1| transposase [Mycobacterium tuberculosis SUMu007]
Length=428

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 28/31 (91%), Positives = 29/31 (94%), Gaps = 0/31 (0%)

Query  33  MVRELASREHTDPFGRKVRISRHTIDRWIRN  63
           MVRELASREHTDPFGR+VRISR TIDRWIR 
Sbjct  1   MVRELASREHTDPFGRRVRISRQTIDRWIRG  31


>gi|289758935|ref|ZP_06518313.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|289714499|gb|EFD78511.1| predicted protein [Mycobacterium tuberculosis T85]
Length=49

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 28/37 (76%), Positives = 30/37 (82%), Gaps = 0/37 (0%)

Query  1   VRAERARAIGLFRYQLIREAADAAHSTKERGKMVREL  37
           VRAERARAIGLFRY +I EAADA HST  RG +VRE 
Sbjct  10  VRAERARAIGLFRYHMIWEAADAVHSTMHRGYIVREF  46


>gi|301063298|ref|ZP_07203843.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300442595|gb|EFK06815.1| conserved hypothetical protein [delta proteobacterium NaphS2]
Length=845

 Score = 37.7 bits (86),  Expect = 0.64, Method: Compositional matrix adjust.
 Identities = 17/61 (28%), Positives = 32/61 (53%), Gaps = 0/61 (0%)

Query  1    VRAERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRW  60
            V   RA  + +++Y L+    +   + K++ +M+ E+  REH    G  +RISR  +  +
Sbjct  330  VPTRRAFNLAMYKYSLVTPFLNPELTRKDKTRMIAEITEREHHPSLGVTLRISRQALANY  389

Query  61   I  61
            I
Sbjct  390  I  390


>gi|90423076|ref|YP_531446.1| hypothetical protein RPC_1565 [Rhodopseudomonas palustris BisB18]
 gi|90105090|gb|ABD87127.1| hypothetical protein RPC_1565 [Rhodopseudomonas palustris BisB18]
Length=669

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 17/53 (33%), Positives = 30/53 (57%), Gaps = 0/53 (0%)

Query  9    IGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWI  61
            +G +R+ +I  A      +  RG+ VR++ +  HT P G+ + I+  TI RW+
Sbjct  91   VGHWRHHIIAPALVHEKWSAARGEAVRKIVAERHTGPDGKPITITDRTIQRWL  143


>gi|51893858|ref|YP_076549.1| transposase [Symbiobacterium thermophilum IAM 14863]
 gi|51857547|dbj|BAD41705.1| transposase [Symbiobacterium thermophilum IAM 14863]
Length=462

 Score = 35.8 bits (81),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 18/53 (34%), Positives = 30/53 (57%), Gaps = 0/53 (0%)

Query  9   IGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWI  61
           I  FR+QLI        +  ER ++++++A + H  P   K R+S  T++RWI
Sbjct  9   IAAFRWQLIAPVVAEDVTRLERRRILQQIARQHHQIPHSDKTRVSVRTLERWI  61


>gi|51893403|ref|YP_076094.1| transposase [Symbiobacterium thermophilum IAM 14863]
 gi|51857092|dbj|BAD41250.1| transposase [Symbiobacterium thermophilum IAM 14863]
Length=469

 Score = 35.8 bits (81),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 18/53 (34%), Positives = 30/53 (57%), Gaps = 0/53 (0%)

Query  9   IGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWI  61
           I  FR+QLI        +  ER ++++++A + H  P   K R+S  T++RWI
Sbjct  16  IAAFRWQLIAPVVAEDVTRLERRRILQQIARQHHQIPHSDKTRVSVCTLERWI  68


>gi|51891187|ref|YP_073878.1| hypothetical protein STH49 [Symbiobacterium thermophilum IAM 
14863]
 gi|51854876|dbj|BAD39034.1| hypothetical protein [Symbiobacterium thermophilum IAM 14863]
Length=166

 Score = 35.8 bits (81),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 18/53 (34%), Positives = 30/53 (57%), Gaps = 0/53 (0%)

Query  9   IGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWI  61
           I  FR+QLI        +  ER ++++++A + H  P   K R+S  T++RWI
Sbjct  9   IAAFRWQLIAPVVAEDVTRLERRRILQQIARQHHQIPHSDKTRVSVRTLERWI  61


>gi|296132015|ref|YP_003639262.1| Integrase catalytic region [Thermincola sp. JR]
 gi|296132091|ref|YP_003639338.1| Integrase catalytic region [Thermincola sp. JR]
 gi|296132985|ref|YP_003640232.1| Integrase catalytic region [Thermincola sp. JR]
 11 more sequence titles
 Length=464

 Score = 35.4 bits (80),  Expect = 3.2, Method: Composition-based stats.
 Identities = 18/58 (32%), Positives = 31/58 (54%), Gaps = 0/58 (0%)

Query  4   ERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWI  61
           E+   I  FRY LI           E+ +++ E+A+RE+ DP G+  R    T++R++
Sbjct  4   EKRLEIANFRYGLIAPVVCRRLEKGEQARLLAEIAAREYNDPHGKTFRPGLRTLERYL  61


>gi|39936914|ref|NP_949190.1| hypothetical protein RPA3853 [Rhodopseudomonas palustris CGA009]
 gi|39650771|emb|CAE29294.1| hypothetical protein RPA3853 [Rhodopseudomonas palustris CGA009]
Length=371

 Score = 35.4 bits (80),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 17/53 (33%), Positives = 30/53 (57%), Gaps = 0/53 (0%)

Query  9    IGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWI  61
            +G +R+ +I  A      +  RG+ VR++A+   T P G+ V I+  T+ RW+
Sbjct  91   VGHWRHHIIAPALRHEKWSAARGEAVRKIAAETRTGPDGKPVTITDRTVQRWL  143


>gi|148263178|ref|YP_001229884.1| integrase catalytic subunit [Geobacter uraniireducens Rf4]
 gi|146396678|gb|ABQ25311.1| Integrase, catalytic region [Geobacter uraniireducens Rf4]
Length=426

 Score = 33.9 bits (76),  Expect = 8.1, Method: Compositional matrix adjust.
 Identities = 19/59 (33%), Positives = 33/59 (56%), Gaps = 1/59 (1%)

Query  4   ERARAIGLFRYQLIREAADAAH-STKERGKMVRELASREHTDPFGRKVRISRHTIDRWI  61
           E+ + + +FR+ +I +    A     ER +++RE  +R+   P   + R+SR TI RWI
Sbjct  4   EQKQRVAVFRFGIIHDFVGGARLDHGERERLLREKCARKWEIPCSNQTRLSRSTILRWI  62


>gi|323702274|ref|ZP_08113940.1| Integrase catalytic region [Desulfotomaculum nigrificans DSM 
574]
 gi|323532764|gb|EGB22637.1| Integrase catalytic region [Desulfotomaculum nigrificans DSM 
574]
Length=462

 Score = 33.9 bits (76),  Expect = 9.4, Method: Composition-based stats.
 Identities = 17/59 (29%), Positives = 33/59 (56%), Gaps = 0/59 (0%)

Query  4   ERARAIGLFRYQLIREAADAAHSTKERGKMVRELASREHTDPFGRKVRISRHTIDRWIR  62
           E+  AI  FRY LI           E+  ++++++++E+ DP G  VR    T++R+++
Sbjct  4   EKRLAIANFRYGLIAPIVCRKLEKGEQAALLKDISAKEYIDPDGHIVRPGLRTLERYLQ  62



Lambda     K      H
   0.325    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131230491224


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40