BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3771c

Length=108
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610907|ref|NP_218288.1|  hypothetical protein Rv3771c [Mycob...   205    2e-51
gi|340628741|ref|YP_004747193.1|  hypothetical protein MCAN_37911...   171    3e-41
gi|167967616|ref|ZP_02549893.1|  hypothetical protein MtubH3_0610...   131    4e-29
gi|294994095|ref|ZP_06799786.1|  hypothetical protein Mtub2_06173...   131    4e-29
gi|308232250|ref|ZP_07415430.2|  hypothetical protein TMAG_03193 ...   131    4e-29
gi|289575509|ref|ZP_06455736.1|  conserved hypothetical protein [...   130    4e-29
gi|289448470|ref|ZP_06438214.1|  conserved hypothetical protein [...   130    5e-29
gi|15609948|ref|NP_217327.1|  hypothetical protein Rv2811 [Mycoba...   130    5e-29
gi|296169419|ref|ZP_06851041.1|  conserved hypothetical protein [...   112    2e-23
gi|15842347|ref|NP_337384.1|  hypothetical protein MT2878 [Mycoba...  89.4    2e-16
gi|289444360|ref|ZP_06434104.1|  conserved hypothetical protein [...  73.6    1e-11
gi|258655053|ref|YP_003204209.1|  hypothetical protein Namu_4947 ...  63.2    1e-08
gi|226334813|ref|YP_002784485.1|  hypothetical protein ROP_pKNR-0...  59.3    2e-07
gi|258651520|ref|YP_003200676.1|  hypothetical protein Namu_1284 ...  55.8    2e-06
gi|120401572|ref|YP_951401.1|  hypothetical protein Mvan_0551 [My...  55.1    4e-06
gi|119854967|ref|YP_935572.1|  hypothetical protein Mkms_5573 [My...  54.3    6e-06
gi|336117532|ref|YP_004572300.1|  hypothetical protein MLP_18830 ...  49.7    1e-04
gi|111026944|ref|YP_708922.1|  hypothetical protein RHA1_ro11117 ...  44.7    0.005
gi|296169410|ref|ZP_06851032.1|  conserved hypothetical protein [...  39.3    0.19 
gi|289208256|ref|YP_003460322.1|  peptidase M48 Ste24p [Thioalkal...  35.8    1.9  
gi|15964086|ref|NP_384439.1|  hypothetical protein SMc00413 [Sino...  35.8    2.4  
gi|9966392|gb|AAG10238.1|AF201699_3  unknown [Sinorhizobium melil...  35.8    2.4  
gi|336035104|gb|AEH81036.1|  phosphoglycerate mutase [Sinorhizobi...  35.4    2.6  
gi|226349348|ref|YP_002776462.1|  hypothetical protein ROP_pROB01...  35.0    4.0  
gi|227824172|ref|YP_002828145.1|  hypothetical protein NGR_c36710...  34.3    6.6  
gi|295689526|ref|YP_003593219.1|  hypothetical protein Cseg_2137 ...  33.9    8.9  


>gi|15610907|ref|NP_218288.1| hypothetical protein Rv3771c [Mycobacterium tuberculosis H37Rv]
 gi|15843394|ref|NP_338431.1| hypothetical protein MT3880 [Mycobacterium tuberculosis CDC1551]
 gi|31794943|ref|NP_857436.1| hypothetical protein Mb3799c [Mycobacterium bovis AF2122/97]
 54 more sequence titles
 Length=108

 Score =  205 bits (521),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 107/108 (99%), Positives = 108/108 (100%), Gaps = 0/108 (0%)

Query  1    VPAPAEKALSQVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMP  60
            +PAPAEKALSQVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMP
Sbjct  1    MPAPAEKALSQVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMP  60

Query  61   DAAVGVFAYAVTVIAAVVTVIECQFALSTVSLAETAVAVSGGRLVAPG  108
            DAAVGVFAYAVTVIAAVVTVIECQFALSTVSLAETAVAVSGGRLVAPG
Sbjct  61   DAAVGVFAYAVTVIAAVVTVIECQFALSTVSLAETAVAVSGGRLVAPG  108


>gi|340628741|ref|YP_004747193.1| hypothetical protein MCAN_37911 [Mycobacterium canettii CIPT 
140010059]
 gi|340006931|emb|CCC46122.1| putative uncharacterized protein [Mycobacterium canettii CIPT 
140010059]
Length=121

 Score =  171 bits (434),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 103/106 (98%), Positives = 104/106 (99%), Gaps = 0/106 (0%)

Query  3    APAEKALSQVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPDA  62
            APAEKALS+VGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPDA
Sbjct  3    APAEKALSRVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPDA  62

Query  63   AVGVFAYAVTVIAAVVTVIECQFALSTVSLAETAVAVSGGRLVAPG  108
            AVGVFAYAVTVIAAVVTVIE QFALSTVSLAETAVAVS GRLVAPG
Sbjct  63   AVGVFAYAVTVIAAVVTVIERQFALSTVSLAETAVAVSSGRLVAPG  108


>gi|167967616|ref|ZP_02549893.1| hypothetical protein MtubH3_06106 [Mycobacterium tuberculosis 
H37Ra]
 gi|297732421|ref|ZP_06961539.1| hypothetical protein MtubKR_15092 [Mycobacterium tuberculosis 
KZN R506]
Length=142

 Score =  131 bits (329),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 79/108 (74%), Positives = 85/108 (79%), Gaps = 0/108 (0%)

Query  1    VPAPAEKALSQVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMP  60
            V A A KA S+VGFRRIA D+ARPAETVRGWLRRFAER EAVRSVFTV L AVD DPVMP
Sbjct  22   VSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERVEAVRSVFTVWLCAVDADPVMP  81

Query  61   DAAVGVFAYAVTVIAAVVTVIECQFALSTVSLAETAVAVSGGRLVAPG  108
            DA  G F  AV  I A+   I  +F+L TVSLAETAVAVSGGRL+APG
Sbjct  82   DAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAVSGGRLLAPG  129


>gi|294994095|ref|ZP_06799786.1| hypothetical protein Mtub2_06173 [Mycobacterium tuberculosis 
210]
Length=139

 Score =  131 bits (329),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 79/108 (74%), Positives = 85/108 (79%), Gaps = 0/108 (0%)

Query  1    VPAPAEKALSQVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMP  60
            V A A KA S+VGFRRIA D+ARPAETVRGWLRRFAER EAVRSVFTV L AVD DPVMP
Sbjct  19   VSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERVEAVRSVFTVWLCAVDADPVMP  78

Query  61   DAAVGVFAYAVTVIAAVVTVIECQFALSTVSLAETAVAVSGGRLVAPG  108
            DA  G F  AV  I A+   I  +F+L TVSLAETAVAVSGGRL+APG
Sbjct  79   DAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAVSGGRLLAPG  126


>gi|308232250|ref|ZP_07415430.2| hypothetical protein TMAG_03193 [Mycobacterium tuberculosis SUMu001]
 gi|308369866|ref|ZP_07419331.2| hypothetical protein TMBG_02945 [Mycobacterium tuberculosis SUMu002]
 gi|308371136|ref|ZP_07423946.2| hypothetical protein TMCG_02057 [Mycobacterium tuberculosis SUMu003]
 21 more sequence titles
 Length=215

 Score =  131 bits (329),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 79/108 (74%), Positives = 85/108 (79%), Gaps = 0/108 (0%)

Query  1    VPAPAEKALSQVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMP  60
            V A A KA S+VGFRRIA D+ARPAETVRGWLRRFAER EAVRSVFTV L AVD DPVMP
Sbjct  95   VSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERVEAVRSVFTVWLCAVDADPVMP  154

Query  61   DAAVGVFAYAVTVIAAVVTVIECQFALSTVSLAETAVAVSGGRLVAPG  108
            DA  G F  AV  I A+   I  +F+L TVSLAETAVAVSGGRL+APG
Sbjct  155  DAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAVSGGRLLAPG  202


>gi|289575509|ref|ZP_06455736.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289539940|gb|EFD44518.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
Length=202

 Score =  130 bits (328),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 79/108 (74%), Positives = 85/108 (79%), Gaps = 0/108 (0%)

Query  1    VPAPAEKALSQVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMP  60
            V A A KA S+VGFRRIA D+ARPAETVRGWLRRFAER EAVRSVFTV L AVD DPVMP
Sbjct  82   VSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERVEAVRSVFTVWLCAVDADPVMP  141

Query  61   DAAVGVFAYAVTVIAAVVTVIECQFALSTVSLAETAVAVSGGRLVAPG  108
            DA  G F  AV  I A+   I  +F+L TVSLAETAVAVSGGRL+APG
Sbjct  142  DAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAVSGGRLLAPG  189


>gi|289448470|ref|ZP_06438214.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289421428|gb|EFD18629.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=202

 Score =  130 bits (328),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 79/108 (74%), Positives = 85/108 (79%), Gaps = 0/108 (0%)

Query  1    VPAPAEKALSQVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMP  60
            V A A KA S+VGFRRIA D+ARPAETVRGWLRRFAER EAVRSVFTV L AVD DPVMP
Sbjct  82   VSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERVEAVRSVFTVWLCAVDADPVMP  141

Query  61   DAAVGVFAYAVTVIAAVVTVIECQFALSTVSLAETAVAVSGGRLVAPG  108
            DA  G F  AV  I A+   I  +F+L TVSLAETAVAVSGGRL+APG
Sbjct  142  DAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAVSGGRLLAPG  189


>gi|15609948|ref|NP_217327.1| hypothetical protein Rv2811 [Mycobacterium tuberculosis H37Rv]
 gi|31793986|ref|NP_856479.1| hypothetical protein Mb2834 [Mycobacterium bovis AF2122/97]
 gi|121638690|ref|YP_978914.1| hypothetical protein BCG_2829 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 41 more sequence titles
 Length=202

 Score =  130 bits (328),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 79/108 (74%), Positives = 85/108 (79%), Gaps = 0/108 (0%)

Query  1    VPAPAEKALSQVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMP  60
            V A A KA S+VGFRRIA D+ARPAETVRGWLRRFAER EAVRSVFTV L AVD DPVMP
Sbjct  82   VSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERVEAVRSVFTVWLCAVDADPVMP  141

Query  61   DAAVGVFAYAVTVIAAVVTVIECQFALSTVSLAETAVAVSGGRLVAPG  108
            DA  G F  AV  I A+   I  +F+L TVSLAETAVAVSGGRL+APG
Sbjct  142  DAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAVSGGRLLAPG  189


>gi|296169419|ref|ZP_06851041.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895921|gb|EFG75614.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=192

 Score =  112 bits (279),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 64/78 (83%), Positives = 67/78 (86%), Gaps = 1/78 (1%)

Query  1    VPAPAEKALSQ-VGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVM  59
            V A A KAL + VGFRRIAADLARP ETVRGWLRRFAERAEAVRS+FTV LRAVDPDPVM
Sbjct  110  VSALAAKALRRRVGFRRIAADLARPVETVRGWLRRFAERAEAVRSMFTVWLRAVDPDPVM  169

Query  60   PDAAVGVFAYAVTVIAAV  77
            P+ A GV A AVTVIAAV
Sbjct  170  PEPAGGVVADAVTVIAAV  187


>gi|15842347|ref|NP_337384.1| hypothetical protein MT2878 [Mycobacterium tuberculosis CDC1551]
 gi|13882644|gb|AAK47198.1| hypothetical protein MT2878 [Mycobacterium tuberculosis CDC1551]
Length=178

 Score = 89.4 bits (220),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 57/85 (68%), Positives = 61/85 (72%), Gaps = 0/85 (0%)

Query  24   PAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPDAAVGVFAYAVTVIAAVVTVIEC  83
            P     G LRRFAER EAVRSVFTV L AVD DPVMPDA  G F  AV  I A+   I  
Sbjct  81   PGGDGAGLLRRFAERVEAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGR  140

Query  84   QFALSTVSLAETAVAVSGGRLVAPG  108
            +F+L TVSLAETAVAVSGGRL+APG
Sbjct  141  RFSLPTVSLAETAVAVSGGRLLAPG  165


>gi|289444360|ref|ZP_06434104.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289417279|gb|EFD14519.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=175

 Score = 73.6 bits (179),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 42/61 (69%), Positives = 44/61 (73%), Gaps = 1/61 (1%)

Query  1    VPAPAEKALSQVGFRRIAADLARPAETVRGWLRRFAERAEA-VRSVFTVMLRAVDPDPVM  59
            V A A KA S+VGFRRIA D+ARPAETVRGWLRRFAER EA    V  V    VD DPVM
Sbjct  82   VSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERVEAGAVGVHGVGCARVDADPVM  141

Query  60   P  60
            P
Sbjct  142  P  142


>gi|258655053|ref|YP_003204209.1| hypothetical protein Namu_4947 [Nakamurella multipartita DSM 
44233]
 gi|258558278|gb|ACV81220.1| hypothetical protein Namu_4947 [Nakamurella multipartita DSM 
44233]
Length=197

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query  13   GFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPDAAVGVFAYAVT  72
            G R IAA +  P  T RGWLRR + R E VR  FTV+ R    D  +PDAA   +   V 
Sbjct  90   GHRTIAALVGTPTSTARGWLRRMSTRLEPVRVHFTVVTRRAGVDQAVPDAAGDAWRDVVA  149

Query  73   VIAAVVTVIECQFA----LSTVSLAETAVAVSGGRLVAPG  108
             +AA    I  +F     + TV+ A+ A A SGGRL++PG
Sbjct  150  AVAAAWLAITSRFGSAGLVGTVTAAQVACASSGGRLLSPG  189


>gi|226334813|ref|YP_002784485.1| hypothetical protein ROP_pKNR-00410 [Rhodococcus opacus B4]
 gi|226246033|dbj|BAH56133.1| hypothetical protein [Rhodococcus opacus B4]
Length=213

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query  13   GFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPDAAVGVFAYAVT  72
            G RR+AA +  PA TVRGWLRR AER E VRS F  +      D  +PD     +   ++
Sbjct  92   GHRRVAAVVGVPATTVRGWLRRMAERLEEVRSWFLGVAVVAGVDVTIPDTTGCRWRDVLS  151

Query  73   VIAAVVTVIECQFA----LSTVSLAETAVAVSGGRLVAPG  108
             +      +  +F     +  V+    AVA SGGRL+APG
Sbjct  152  AVETAAAAVRSRFGPAGFVGAVTPVRVAVAASGGRLLAPG  191


>gi|258651520|ref|YP_003200676.1| hypothetical protein Namu_1284 [Nakamurella multipartita DSM 
44233]
 gi|258652264|ref|YP_003201420.1| hypothetical protein Namu_2051 [Nakamurella multipartita DSM 
44233]
 gi|258653877|ref|YP_003203033.1| hypothetical protein Namu_3745 [Nakamurella multipartita DSM 
44233]
 gi|258654633|ref|YP_003203789.1| hypothetical protein Namu_4521 [Nakamurella multipartita DSM 
44233]
 gi|258554745|gb|ACV77687.1| hypothetical protein Namu_1284 [Nakamurella multipartita DSM 
44233]
 gi|258555489|gb|ACV78431.1| hypothetical protein Namu_2051 [Nakamurella multipartita DSM 
44233]
 gi|258557102|gb|ACV80044.1| hypothetical protein Namu_3745 [Nakamurella multipartita DSM 
44233]
 gi|258557858|gb|ACV80800.1| hypothetical protein Namu_4521 [Nakamurella multipartita DSM 
44233]
Length=197

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query  13   GFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPDAAVGVFAYAVT  72
            G R +A  +  PA TVRGWLRR + R E VR  FTV  R    D   PDA    +   V 
Sbjct  90   GHRAVAVLVGAPAPTVRGWLRRMSTRLEPVRVHFTVAARRAGVDQPAPDATGDAWRDVVA  149

Query  73   VIAAVVTVIECQFA----LSTVSLAETAVAVSGGRLVAPG  108
             +AA    I  +F     + TV+  + A A SGGRL++PG
Sbjct  150  AVAAAWVAIASRFGSAGLVGTVTAGQVACASSGGRLLSPG  189


>gi|120401572|ref|YP_951401.1| hypothetical protein Mvan_0551 [Mycobacterium vanbaalenii PYR-1]
 gi|120401588|ref|YP_951417.1| hypothetical protein Mvan_0570 [Mycobacterium vanbaalenii PYR-1]
 gi|120402692|ref|YP_952521.1| hypothetical protein Mvan_1687 [Mycobacterium vanbaalenii PYR-1]
 7 more sequence titles
 Length=199

 Score = 55.1 bits (131),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 39/101 (39%), Positives = 50/101 (50%), Gaps = 4/101 (3%)

Query  12   VGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPDAAVGVFAYAV  71
            VG RRIAA L  P  TVRGWLRR  +R E +R+ F  +      D  +PD     +   V
Sbjct  91   VGHRRIAAWLQVPPATVRGWLRRAGQRLEPMRAWFLTVAVRTGIDVTIPDGFGCGWRDLV  150

Query  72   TVIAAVVTVIECQFA----LSTVSLAETAVAVSGGRLVAPG  108
              +   V  I  +F     L  V+ A+   A SG RL+APG
Sbjct  151  AALRCAVAAIGQRFGPAGLLGAVTPAQVMAAASGSRLLAPG  191


>gi|119854967|ref|YP_935572.1| hypothetical protein Mkms_5573 [Mycobacterium sp. KMS]
 gi|315441536|ref|YP_004074413.1| hypothetical protein Mspyr1_54160 [Mycobacterium sp. Spyr1]
 gi|315444102|ref|YP_004076981.1| hypothetical protein Mspyr1_25090 [Mycobacterium sp. Spyr1]
 7 more sequence titles
 Length=206

 Score = 54.3 bits (129),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 39/101 (39%), Positives = 52/101 (52%), Gaps = 4/101 (3%)

Query  12   VGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPDAAVGVFAYAV  71
            VG R IAA L  P  TVRGWLRR  +R E++R+ F  +      D ++PD     +   V
Sbjct  91   VGHRGIAARLQVPPSTVRGWLRRAGQRLESMRTWFLTVAVGTGIDVMIPDGLGCGWRDVV  150

Query  72   TVIAAVVTVIECQFA----LSTVSLAETAVAVSGGRLVAPG  108
              +    + I  +F     L  V+ A   VAVSG RL+APG
Sbjct  151  AAVMVAASAIGQRFGPAGLLGVVTPALVVVAVSGARLLAPG  191


>gi|336117532|ref|YP_004572300.1| hypothetical protein MLP_18830 [Microlunatus phosphovorus NM-1]
 gi|334685312|dbj|BAK34897.1| hypothetical protein MLP_18830 [Microlunatus phosphovorus NM-1]
Length=205

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 4/100 (4%)

Query  13   GFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPDAAVGVFAYAVT  72
            G RRI   +  PA TVRGWLRR   R E  R     ++     D ++P A    +   + 
Sbjct  91   GHRRIGEAVGVPAATVRGWLRRIGTRLETTRGYLLQVVVRAGVDRLVPKAQGSPWRDLLA  150

Query  73   VIAAVVTVIECQFA----LSTVSLAETAVAVSGGRLVAPG  108
             +AA    +  +F     L  V+  + A A SGGRL+APG
Sbjct  151  GLAAATAAVTSRFGPIGVLGPVTAWQVAAACSGGRLLAPG  190


>gi|111026944|ref|YP_708922.1| hypothetical protein RHA1_ro11117 [Rhodococcus jostii RHA1]
 gi|110825483|gb|ABH00764.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=218

 Score = 44.7 bits (104),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 50/100 (50%), Gaps = 4/100 (4%)

Query  13   GFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPDAAVGVFAYAVT  72
            G R IA  L  P  TVRGWLR  A RA+AVRS F  +      D  +P     V+   + 
Sbjct  92   GHRPIAQRLGIPGSTVRGWLRVEAARADAVRSWFLAVAVTTGVDVAVPRTTESVWGDVLA  151

Query  73   VIAAVVTVIECQFALSTV----SLAETAVAVSGGRLVAPG  108
             + A    I  +F  S V    + A+ AVA S GRL++PG
Sbjct  152  AVHAAHGAITARFGRSAVLGAVTAAQVAVAASAGRLLSPG  191


>gi|296169410|ref|ZP_06851032.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895912|gb|EFG75605.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=48

 Score = 39.3 bits (90),  Expect = 0.19, Method: Compositional matrix adjust.
 Identities = 21/29 (73%), Positives = 24/29 (83%), Gaps = 0/29 (0%)

Query  80   VIECQFALSTVSLAETAVAVSGGRLVAPG  108
            +IE +FAL  VSLAE AVAVSGGRL+A G
Sbjct  1    MIERRFALPEVSLAEVAVAVSGGRLLASG  29


>gi|289208256|ref|YP_003460322.1| peptidase M48 Ste24p [Thioalkalivibrio sp. K90mix]
 gi|288943887|gb|ADC71586.1| peptidase M48 Ste24p [Thioalkalivibrio sp. K90mix]
Length=657

 Score = 35.8 bits (81),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 24/73 (33%), Positives = 34/73 (47%), Gaps = 3/73 (4%)

Query  6    EKALSQVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPDAAVG  65
            E AL ++  RR   D+ RP++   G  RR A+     R V  V+     PD   PDAAV 
Sbjct  498  EYALGRL-VRRQLQDIERPSQARSGGRRRLADNGGQARYVLAVLAHHGHPDD--PDAAVT  554

Query  66   VFAYAVTVIAAVV  78
             F   V  +  ++
Sbjct  555  AFNAGVAALTGIM  567


>gi|15964086|ref|NP_384439.1| hypothetical protein SMc00413 [Sinorhizobium meliloti 1021]
 gi|334318361|ref|YP_004550980.1| phosphoglycerate mutase [Sinorhizobium meliloti AK83]
 gi|15073262|emb|CAC41770.1| Hypothetical protein SMc00413 [Sinorhizobium meliloti 1021]
 gi|333813663|gb|AEG06332.1| Phosphoglycerate mutase [Sinorhizobium meliloti BL225C]
 gi|334097355|gb|AEG55366.1| Phosphoglycerate mutase [Sinorhizobium meliloti AK83]
Length=193

 Score = 35.8 bits (81),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 31/105 (30%), Positives = 46/105 (44%), Gaps = 20/105 (19%)

Query  2    PAPAEKALSQVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPD  61
            P   EKA  Q          ARP E+ +GW R    +A   R+VF V+ R    DP +P 
Sbjct  89   PEEFEKAADQF--------FARPEESFKGWERAVDAQARISRAVFQVLDRH---DPAVPI  137

Query  62   AAVGVFAYAVTVIAAVVTVIECQFALSTVSLAETAVAVSGGRLVA  106
            A +G           V T+++C+   + ++ + T     GG L A
Sbjct  138  AFIGH--------GGVGTLLKCRMTGTAIARS-TDQPPGGGNLFA  173


>gi|9966392|gb|AAG10238.1|AF201699_3 unknown [Sinorhizobium meliloti]
Length=162

 Score = 35.8 bits (81),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 31/105 (30%), Positives = 46/105 (44%), Gaps = 20/105 (19%)

Query  2    PAPAEKALSQVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPD  61
            P   EKA  Q          ARP E+ +GW R    +A   R+VF V+ R    DP +P 
Sbjct  58   PEEFEKAADQF--------FARPEESFKGWERAVDAQARISRAVFQVLDRH---DPAVPI  106

Query  62   AAVGVFAYAVTVIAAVVTVIECQFALSTVSLAETAVAVSGGRLVA  106
            A +G           V T+++C+   + ++ + T     GG L A
Sbjct  107  AFIGH--------GGVGTLLKCRMTGTAIARS-TDQPPGGGNLFA  142


>gi|336035104|gb|AEH81036.1| phosphoglycerate mutase [Sinorhizobium meliloti SM11]
Length=206

 Score = 35.4 bits (80),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 31/105 (30%), Positives = 46/105 (44%), Gaps = 20/105 (19%)

Query  2    PAPAEKALSQVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPD  61
            P   EKA  Q          ARP E+ +GW R    +A   R+VF V+ R    DP +P 
Sbjct  102  PEEFEKAADQF--------FARPEESFKGWERAVDAQARISRAVFQVLDRH---DPAVPI  150

Query  62   AAVGVFAYAVTVIAAVVTVIECQFALSTVSLAETAVAVSGGRLVA  106
            A +G           V T+++C+   + ++ + T     GG L A
Sbjct  151  AFIGH--------GGVGTLLKCRMTGTAIARS-TDQPPGGGNLFA  186


>gi|226349348|ref|YP_002776462.1| hypothetical protein ROP_pROB01-01110 [Rhodococcus opacus B4]
 gi|226245263|dbj|BAH55610.1| hypothetical protein [Rhodococcus opacus B4]
Length=195

 Score = 35.0 bits (79),  Expect = 4.0, Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 20/30 (67%), Gaps = 1/30 (3%)

Query  5    AEKALSQVGFRRIAADLARPAETVRGWLRR  34
            A KA   +GFRRIA  + RP  TVR WLRR
Sbjct  89   AHKA-KGLGFRRIAERMGRPESTVRRWLRR  117


>gi|227824172|ref|YP_002828145.1| hypothetical protein NGR_c36710 [Sinorhizobium fredii NGR234]
 gi|227343174|gb|ACP27392.1| hypothetical protein NGR_c36710 [Sinorhizobium fredii NGR234]
Length=193

 Score = 34.3 bits (77),  Expect = 6.6, Method: Compositional matrix adjust.
 Identities = 26/82 (32%), Positives = 39/82 (48%), Gaps = 13/82 (15%)

Query  21   LARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPDAAVGVFAYAVTVIAAVVTV  80
             A P E+  GW R    +A   R+VF ++ R    DP +P A VG           V T+
Sbjct  100  FAHPEESYSGWERAIDAQARIARAVFYILDRH---DPAIPIAFVGH--------GGVGTL  148

Query  81   IECQFALSTVSLAETAVAVSGG  102
            ++C+ A   V +A +A  + GG
Sbjct  149  LKCRMA--GVPIARSADQLPGG  168


>gi|295689526|ref|YP_003593219.1| hypothetical protein Cseg_2137 [Caulobacter segnis ATCC 21756]
 gi|295431429|gb|ADG10601.1| conserved hypothetical protein [Caulobacter segnis ATCC 21756]
Length=145

 Score = 33.9 bits (76),  Expect = 8.9, Method: Compositional matrix adjust.
 Identities = 15/19 (79%), Positives = 16/19 (85%), Gaps = 0/19 (0%)

Query  14   FRRIAADLARPAETVRGWL  32
            F+RIAADLAR  ETV GWL
Sbjct  94   FKRIAADLARGGETVEGWL  112



Lambda     K      H
   0.324    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129996839040


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40