BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3783
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610919|ref|NP_218300.1| O-antigen/lipopolysaccharide transp... 565 3e-159
gi|340628753|ref|YP_004747205.1| putative O-antigen/lipopolysacc... 563 1e-158
gi|240168554|ref|ZP_04747213.1| O-antigen export system, permeas... 525 2e-147
gi|41406337|ref|NP_959173.1| hypothetical protein MAP0239c [Myco... 509 2e-142
gi|342860040|ref|ZP_08716692.1| O-antigen ABC transporter permea... 507 8e-142
gi|183985306|ref|YP_001853597.1| O-antigen/lipopolysaccharide tr... 505 3e-141
gi|118615996|ref|YP_904328.1| O-antigen/lipopolysaccharide trans... 505 3e-141
gi|296166910|ref|ZP_06849327.1| O-antigen export system [Mycobac... 501 4e-140
gi|254822486|ref|ZP_05227487.1| O-antigen export system, permeas... 501 5e-140
gi|15826945|ref|NP_301208.1| ABC transporter component [Mycobact... 486 2e-135
gi|333992723|ref|YP_004525337.1| O-antigen/lipopolysaccharide tr... 458 5e-127
gi|118474009|ref|YP_890581.1| O-antigen export system, permease ... 452 4e-125
gi|108801956|ref|YP_642153.1| ABC-2 type transporter [Mycobacter... 451 6e-125
gi|294995303|ref|ZP_06800994.1| hypothetical protein Mtub2_12528... 442 2e-122
gi|120406562|ref|YP_956391.1| ABC-2 type transporter [Mycobacter... 442 2e-122
gi|145221776|ref|YP_001132454.1| ABC-2 type transporter [Mycobac... 434 5e-120
gi|229492607|ref|ZP_04386410.1| O-antigen export system, permeas... 394 1e-107
gi|169627306|ref|YP_001700955.1| O-antigen/lipopolysaccharide tr... 384 1e-104
gi|226303749|ref|YP_002763707.1| ABC transporter permease protei... 349 3e-94
gi|326385010|ref|ZP_08206683.1| ABC-2 type transporter [Gordonia... 340 1e-91
gi|226363388|ref|YP_002781170.1| ABC transporter permease protei... 340 2e-91
gi|111021098|ref|YP_704070.1| ABC O-antigen transporter permease... 339 3e-91
gi|54022183|ref|YP_116425.1| putative ABC transporter membrane p... 338 5e-91
gi|262200307|ref|YP_003271515.1| ABC transporter [Gordonia bronc... 327 1e-87
gi|333917828|ref|YP_004491409.1| putative ABC transporter permea... 325 5e-87
gi|300857536|ref|YP_003782519.1| hypothetical protein cpfrc_0011... 323 2e-86
gi|312137751|ref|YP_004005087.1| ABC transporter transmembrane p... 321 6e-86
gi|337289778|ref|YP_004628799.1| hypothetical protein CULC22_001... 321 7e-86
gi|343926177|ref|ZP_08765686.1| putative ABC transporter permeas... 321 7e-86
gi|38232800|ref|NP_938567.1| ABC transporter permease [Corynebac... 320 1e-85
gi|19551452|ref|NP_599454.1| ABC-type transporter, permease comp... 320 2e-85
gi|145294325|ref|YP_001137146.1| hypothetical protein cgR_0280 [... 320 2e-85
gi|62389098|ref|YP_224500.1| polysaccharide/polyol phosphate exp... 320 2e-85
gi|319951241|ref|ZP_08025078.1| hypothetical protein ES5_16381 [... 319 2e-85
gi|259508131|ref|ZP_05751031.1| O-antigen export system, permeas... 317 2e-84
gi|25026734|ref|NP_736788.1| putative O-antigen export system pe... 316 3e-84
gi|300780055|ref|ZP_07089911.1| ABC superfamily ATP binding cass... 315 5e-84
gi|225020134|ref|ZP_03709326.1| hypothetical protein CORMATOL_00... 314 8e-84
gi|21322965|dbj|BAB97594.1| ABC-type transporter, permease compo... 314 1e-83
gi|305679868|ref|ZP_07402678.1| ABC-2 type transporter [Coryneba... 313 2e-83
gi|256374291|ref|YP_003097951.1| ABC transporter [Actinosynnema ... 312 3e-83
gi|227506057|ref|ZP_03936106.1| ABC superfamily ATP binding cass... 306 2e-81
gi|317507751|ref|ZP_07965455.1| ABC-2 type transporter [Segnilip... 305 3e-81
gi|227831944|ref|YP_002833651.1| putative ABC transport system, ... 303 2e-80
gi|227549574|ref|ZP_03979623.1| ABC superfamily ATP binding cass... 302 3e-80
gi|296120142|ref|ZP_06838695.1| O-antigen export system, permeas... 301 6e-80
gi|213965748|ref|ZP_03393941.1| O-antigen export system, permeas... 301 9e-80
gi|237786583|ref|YP_002907288.1| ABC transporter permease [Coryn... 300 1e-79
gi|172041625|ref|YP_001801339.1| putative ABC transport system, ... 300 2e-79
gi|227487364|ref|ZP_03917680.1| ABC superfamily ATP binding cass... 298 6e-79
>gi|15610919|ref|NP_218300.1| O-antigen/lipopolysaccharide transport integral membrane protein
ABC transporter RfbD [Mycobacterium tuberculosis H37Rv]
gi|15843406|ref|NP_338443.1| O-antigen export system, permease protein [Mycobacterium tuberculosis
CDC1551]
gi|31794956|ref|NP_857449.1| O-antigen/lipopolysaccharide transport integral membrane protein
ABC transporter RfbD [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=280
Score = 565 bits (1455), Expect = 3e-159, Method: Compositional matrix adjust.
Identities = 280/280 (100%), Positives = 280/280 (100%), Gaps = 0/280 (0%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT
Sbjct 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP
Sbjct 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG
Sbjct 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP
Sbjct 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
Query 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV
Sbjct 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
>gi|340628753|ref|YP_004747205.1| putative O-antigen/lipopolysaccharide transport integral membrane
protein ABC transporter RFBD [Mycobacterium canettii CIPT
140010059]
gi|340006943|emb|CCC46134.1| putative O-antigen/lipopolysaccharide transport integral membrane
protein ABC transporter RFBD [Mycobacterium canettii CIPT
140010059]
Length=280
Score = 563 bits (1451), Expect = 1e-158, Method: Compositional matrix adjust.
Identities = 279/280 (99%), Positives = 279/280 (99%), Gaps = 0/280 (0%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT
Sbjct 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP
Sbjct 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG
Sbjct 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP
Sbjct 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
Query 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
LLGAHQELRHWLVVLVLTVVGWMLA FAMRQYRARVPYWV
Sbjct 241 LLGAHQELRHWLVVLVLTVVGWMLAVFAMRQYRARVPYWV 280
>gi|240168554|ref|ZP_04747213.1| O-antigen export system, permease protein [Mycobacterium kansasii
ATCC 12478]
Length=280
Score = 525 bits (1353), Expect = 2e-147, Method: Compositional matrix adjust.
Identities = 255/280 (92%), Positives = 267/280 (96%), Gaps = 0/280 (0%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
MTF+DAQASF+ QSRTLAR R DLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT
Sbjct 1 MTFIDAQASFKAQSRTLARARADLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
GTTAVAMGGLYSKLF LELSEHLPYVTLGLI+WNLINAAILDGA+VFV+NEGLIKQLP P
Sbjct 61 GTTAVAMGGLYSKLFHLELSEHLPYVTLGLIIWNLINAAILDGADVFVSNEGLIKQLPTP 120
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVWRQMI FAHNIVIY V+AIIFPKPWSWADLS +PAL LI LNCVWVSLCFG
Sbjct 121 LSVHVYRLVWRQMILFAHNIVIYLVVAIIFPKPWSWADLSVVPALGLIVLNCVWVSLCFG 180
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
ILATRYRDIGPLLFSVVQLLFFMTPIIWND+TLR+QGAGRWS IVELNPLLHYLDIVRAP
Sbjct 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDDTLRQQGAGRWSHIVELNPLLHYLDIVRAP 240
Query 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
LLGAHQELRHW+VVL+LT VGW+LAA AMRQYRARVPYWV
Sbjct 241 LLGAHQELRHWVVVLILTAVGWVLAAIAMRQYRARVPYWV 280
>gi|41406337|ref|NP_959173.1| hypothetical protein MAP0239c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118466977|ref|YP_879529.1| O-antigen ABC transporter permease [Mycobacterium avium 104]
gi|254773294|ref|ZP_05214810.1| O-antigen export system, permease protein [Mycobacterium avium
subsp. avium ATCC 25291]
gi|41394685|gb|AAS02556.1| hypothetical protein MAP_0239c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118168264|gb|ABK69161.1| O-antigen export system, permease protein [Mycobacterium avium
104]
gi|336461590|gb|EGO40456.1| ABC-type polysaccharide/polyol phosphate export systems, permease
component [Mycobacterium avium subsp. paratuberculosis
S397]
Length=276
Score = 509 bits (1311), Expect = 2e-142, Method: Compositional matrix adjust.
Identities = 251/280 (90%), Positives = 263/280 (94%), Gaps = 4/280 (1%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
MTF+DA A QSRTL R R DLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT
Sbjct 1 MTFLDAAA----QSRTLRRARSDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 56
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
GTTAVAMGGLYSKLF LELS HLPYVTLGLI+WNLINAAIL+GA+VFVANEGLIKQLP P
Sbjct 57 GTTAVAMGGLYSKLFHLELSVHLPYVTLGLIIWNLINAAILEGADVFVANEGLIKQLPTP 116
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVWRQMI FAHNIVIY VIA+I+PKPWSWADLS +PALALI LNC+WVSLCFG
Sbjct 117 LSVHVYRLVWRQMILFAHNIVIYVVIAMIYPKPWSWADLSVIPALALIVLNCIWVSLCFG 176
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
ILATRYRDIGPLLFSVVQLLFFMTPIIWND+TLR+QGAGRWSSIVELNPLLHYLDIVRAP
Sbjct 177 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDDTLRQQGAGRWSSIVELNPLLHYLDIVRAP 236
Query 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
LLG+HQELRHW VVLVLT VGW+LAAFAMRQYRARVPYWV
Sbjct 237 LLGSHQELRHWAVVLVLTAVGWLLAAFAMRQYRARVPYWV 276
>gi|342860040|ref|ZP_08716692.1| O-antigen ABC transporter permease [Mycobacterium colombiense
CECT 3035]
gi|342132418|gb|EGT85647.1| O-antigen ABC transporter permease [Mycobacterium colombiense
CECT 3035]
Length=276
Score = 507 bits (1305), Expect = 8e-142, Method: Compositional matrix adjust.
Identities = 250/280 (90%), Positives = 261/280 (94%), Gaps = 4/280 (1%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
MTF+DA A QSRT R RGDLV GFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT
Sbjct 1 MTFLDAAA----QSRTFTRARGDLVAGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 56
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
GTTAVAMGGLYSKLF LELS HLPYVTLGLI+WNLINAAIL+GA+VFVANEGLIKQLP P
Sbjct 57 GTTAVAMGGLYSKLFHLELSVHLPYVTLGLIIWNLINAAILEGADVFVANEGLIKQLPTP 116
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVWRQMI FAHNIVIY VIA+IFPKPWSWADLS +PALALI LNC+WVSLCFG
Sbjct 117 LSVHVYRLVWRQMILFAHNIVIYVVIAMIFPKPWSWADLSVIPALALIVLNCIWVSLCFG 176
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
ILATRYRDIGPLLFSVVQLLFFMTPIIWND+TLR+QGAGRWS IVELNPLLHYLDIVRAP
Sbjct 177 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDDTLRQQGAGRWSKIVELNPLLHYLDIVRAP 236
Query 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
LLG+HQELRHW VVLVLT VGW+LAAFAMRQYRARVPYWV
Sbjct 237 LLGSHQELRHWAVVLVLTAVGWILAAFAMRQYRARVPYWV 276
>gi|183985306|ref|YP_001853597.1| O-antigen/lipopolysaccharide transport integral membrane protein
ABC transporter RfbD [Mycobacterium marinum M]
gi|183178632|gb|ACC43742.1| O-antigen/lipopolysaccharide transport integral membrane protein
ABC transporter RfbD [Mycobacterium marinum M]
Length=276
Score = 505 bits (1301), Expect = 3e-141, Method: Compositional matrix adjust.
Identities = 248/280 (89%), Positives = 263/280 (94%), Gaps = 4/280 (1%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
MTF+DA A QSRT AR RGDL++GFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT
Sbjct 1 MTFIDAAA----QSRTFARARGDLLEGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 56
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
GTTA+AMGGLYSKLF LELS HLPYVTLGLI+WNLINAAILDGA+VFV+NEGLIKQLPAP
Sbjct 57 GTTALAMGGLYSKLFHLELSAHLPYVTLGLIIWNLINAAILDGADVFVSNEGLIKQLPAP 116
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVWRQ+IFFAHNIVIYFV+AIIFPKPWSWADLS +PAL LI LNCVWVS+CFG
Sbjct 117 LSVHVYRLVWRQVIFFAHNIVIYFVVAIIFPKPWSWADLSVVPALGLIVLNCVWVSICFG 176
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
ILATRYRDI PLL S+VQLLFFMTPIIWNDETL RQGAGRWS IVELNPLLHYLDIVRAP
Sbjct 177 ILATRYRDIAPLLNSLVQLLFFMTPIIWNDETLHRQGAGRWSRIVELNPLLHYLDIVRAP 236
Query 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
LLGAHQELRHWLVV+ LT+VGW+LAAFAMRQYRARVPYWV
Sbjct 237 LLGAHQELRHWLVVIALTIVGWVLAAFAMRQYRARVPYWV 276
>gi|118615996|ref|YP_904328.1| O-antigen/lipopolysaccharide transport integral membrane protein
ABC transporter RfbD [Mycobacterium ulcerans Agy99]
gi|118568106|gb|ABL02857.1| O-antigen/lipopolysaccharide transport integral membrane protein
ABC transporter RfbD [Mycobacterium ulcerans Agy99]
Length=318
Score = 505 bits (1300), Expect = 3e-141, Method: Compositional matrix adjust.
Identities = 247/280 (89%), Positives = 263/280 (94%), Gaps = 4/280 (1%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
MTF+DA A QSRT AR RGDL++GFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT
Sbjct 43 MTFIDAAA----QSRTFARARGDLLEGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 98
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
GTTA+AMGGLYSKLF LELS HLPYVTLGLI+WNLINAAILDGA+VFV+NEGLIKQLPAP
Sbjct 99 GTTALAMGGLYSKLFHLELSAHLPYVTLGLIIWNLINAAILDGADVFVSNEGLIKQLPAP 158
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVH+YRLVWRQMIFFAHNIVIYFV+AIIFPKPWSWADLS +PAL LI LNCVWVSLCFG
Sbjct 159 LSVHIYRLVWRQMIFFAHNIVIYFVVAIIFPKPWSWADLSVVPALGLIVLNCVWVSLCFG 218
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
I+ATRYRDI PLL S+VQLLFFMTPIIWNDETL RQGAGRW+ IVELNPLLHYLDIVRAP
Sbjct 219 IVATRYRDIAPLLNSLVQLLFFMTPIIWNDETLHRQGAGRWARIVELNPLLHYLDIVRAP 278
Query 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
LLGAHQELRHWLVV+ LT+VGW+LAAFAMRQYRARVPYWV
Sbjct 279 LLGAHQELRHWLVVIALTIVGWVLAAFAMRQYRARVPYWV 318
>gi|296166910|ref|ZP_06849327.1| O-antigen export system [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897787|gb|EFG77376.1| O-antigen export system [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=276
Score = 501 bits (1291), Expect = 4e-140, Method: Compositional matrix adjust.
Identities = 249/280 (89%), Positives = 258/280 (93%), Gaps = 4/280 (1%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
MTF+DA A QSRT R RGDLV GFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT
Sbjct 1 MTFLDAAA----QSRTFTRARGDLVAGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 56
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
GTTAVAMGGLYSKLF LELS HLPYVTLGLIVWNLINAAIL+GA+VFVANEGLIKQLP P
Sbjct 57 GTTAVAMGGLYSKLFHLELSVHLPYVTLGLIVWNLINAAILEGADVFVANEGLIKQLPTP 116
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVWRQMI FAHNIVIY VIA+I+PKPWSWADLS +PALALI LNC+WVSLCFG
Sbjct 117 LSVHVYRLVWRQMILFAHNIVIYVVIAMIYPKPWSWADLSVIPALALIVLNCIWVSLCFG 176
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
ILATRYRDIGPLLFSVVQLLFFMTPIIWND+TLR QGAGRWS IVELNPLLHYLDIVRAP
Sbjct 177 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDDTLRAQGAGRWSRIVELNPLLHYLDIVRAP 236
Query 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
LLGAHQELRHW VV LT VGW+LAAFAMRQYRARVPYWV
Sbjct 237 LLGAHQELRHWAVVGALTAVGWVLAAFAMRQYRARVPYWV 276
>gi|254822486|ref|ZP_05227487.1| O-antigen export system, permease protein [Mycobacterium intracellulare
ATCC 13950]
Length=276
Score = 501 bits (1290), Expect = 5e-140, Method: Compositional matrix adjust.
Identities = 248/280 (89%), Positives = 260/280 (93%), Gaps = 4/280 (1%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
MTF+DA A QSRT R R DLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT
Sbjct 1 MTFLDAAA----QSRTFTRARRDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 56
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
GTTAVAMGGLYSKLF LELS HLPYVTLGLI+WNLINAAIL+GA+VFVANEGLIKQLP P
Sbjct 57 GTTAVAMGGLYSKLFHLELSVHLPYVTLGLIIWNLINAAILEGADVFVANEGLIKQLPTP 116
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVWRQ+I FAHNIVIY VIA+I+PKPWSWADL+ LPALALI LNC+WVSLCFG
Sbjct 117 LSVHVYRLVWRQVILFAHNIVIYAVIAMIYPKPWSWADLAVLPALALIVLNCIWVSLCFG 176
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
ILATRYRDIGPLLFSVVQLLFFMTPIIWND+TLR+QGAGRWS IVELNPLLHYLDIVRAP
Sbjct 177 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDDTLRQQGAGRWSRIVELNPLLHYLDIVRAP 236
Query 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
LLGAHQELRHW VVLVLT VGW+ AAFAMRQYRARVPYWV
Sbjct 237 LLGAHQELRHWAVVLVLTAVGWVFAAFAMRQYRARVPYWV 276
>gi|15826945|ref|NP_301208.1| ABC transporter component [Mycobacterium leprae TN]
gi|221229423|ref|YP_002502839.1| putative ABC transporter component [Mycobacterium leprae Br4923]
gi|13092492|emb|CAC29620.1| putative ABC transporter component [Mycobacterium leprae]
gi|219932530|emb|CAR70205.1| putative ABC transporter component [Mycobacterium leprae Br4923]
Length=276
Score = 486 bits (1251), Expect = 2e-135, Method: Compositional matrix adjust.
Identities = 236/280 (85%), Positives = 253/280 (91%), Gaps = 4/280 (1%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
MTF+DA A QSRTLAR R DL++G RHELWLHLGWQDIKQRYRRSVLGPFWITIAT
Sbjct 1 MTFVDAAA----QSRTLARARSDLIEGLHRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 56
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
GTT++AMGGLYSKLF L+LS HLPYVTLGLI+WNLINAAIL+GAEVFVANEGLIKQLP P
Sbjct 57 GTTSIAMGGLYSKLFHLDLSVHLPYVTLGLIIWNLINAAILEGAEVFVANEGLIKQLPTP 116
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVWRQ I F HNI+IY V+ I+FPKPWSWADLS PALAL+ LN VWVSLCFG
Sbjct 117 LSVHVYRLVWRQTILFTHNIIIYLVVGILFPKPWSWADLSVFPALALVILNSVWVSLCFG 176
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
ILATRYRDIGPLLFSVVQLLFF+TPIIWND+ LR+QG GRWSSIVELNPLLHYLDIVRAP
Sbjct 177 ILATRYRDIGPLLFSVVQLLFFITPIIWNDDALRQQGEGRWSSIVELNPLLHYLDIVRAP 236
Query 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
LLGAHQELRHW VV+ LT GW+LAAFAMRQYRARVPYWV
Sbjct 237 LLGAHQELRHWAVVVTLTAAGWLLAAFAMRQYRARVPYWV 276
>gi|333992723|ref|YP_004525337.1| O-antigen/lipopolysaccharide transport integral membrane protein
ABC transporter RfbD [Mycobacterium sp. JDM601]
gi|333488691|gb|AEF38083.1| O-antigen/lipopolysaccharide transport integral membrane protein
ABC transporter RfbD [Mycobacterium sp. JDM601]
Length=276
Score = 458 bits (1178), Expect = 5e-127, Method: Compositional matrix adjust.
Identities = 223/280 (80%), Positives = 244/280 (88%), Gaps = 4/280 (1%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
M+F D A QS+T AR R DL DGFRRHELWLHLGWQDIKQRYRRSVLGPFWITI T
Sbjct 1 MSFTDIAA----QSKTFARARADLADGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIGT 56
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
TTAVAMGGLYSKLF L+L+ HLPYVTLGLIVWNL+NAAIL+GA+VFVANEGLIKQLP P
Sbjct 57 ATTAVAMGGLYSKLFHLDLAVHLPYVTLGLIVWNLLNAAILEGADVFVANEGLIKQLPTP 116
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVWRQMI FAHNIVIY IA+IFPKPWSWADLS +PALA+I LNCVWVSLCFG
Sbjct 117 LSVHVYRLVWRQMILFAHNIVIYIPIALIFPKPWSWADLSVIPALAVIALNCVWVSLCFG 176
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
ILATRYRDI PLLFSVVQLLF MTPIIWN +TLR QGA RW +++E NPL+HYL+IVRAP
Sbjct 177 ILATRYRDISPLLFSVVQLLFLMTPIIWNYDTLRAQGASRWMTVIEFNPLMHYLEIVRAP 236
Query 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
LLGA Q LRHW +VLVLT +GW +AA +RQ+RARV YWV
Sbjct 237 LLGAAQPLRHWAIVLVLTALGWAVAALVLRQFRARVAYWV 276
>gi|118474009|ref|YP_890581.1| O-antigen export system, permease [Mycobacterium smegmatis str.
MC2 155]
gi|118175296|gb|ABK76192.1| O-antigen export system, permease protein [Mycobacterium smegmatis
str. MC2 155]
Length=276
Score = 452 bits (1162), Expect = 4e-125, Method: Compositional matrix adjust.
Identities = 225/280 (81%), Positives = 249/280 (89%), Gaps = 4/280 (1%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
MTF DA A QS+T+AR R DLV+GF + ELW HLGWQDIKQRYRRSVLGPFWITIAT
Sbjct 1 MTFTDAAA----QSKTMARARRDLVEGFAKRELWAHLGWQDIKQRYRRSVLGPFWITIAT 56
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
G TAVAMG LYSKLF+LELSEHLPYVTLGLI+WNLINA+IL+GAEVF+ANEGLIKQLP P
Sbjct 57 GATAVAMGVLYSKLFKLELSEHLPYVTLGLIIWNLINASILEGAEVFIANEGLIKQLPTP 116
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVWRQ+I FAHNI+I+ +IAII+PKPW+W DL+ +PAL LI LN VWV+LCFG
Sbjct 117 LSVHVYRLVWRQIILFAHNIIIFVIIAIIYPKPWTWTDLAVIPALGLIMLNMVWVALCFG 176
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
ILATRYRDIGPLL SVVQLLFFMTPIIWN+ TL++QGAG W+ IVE+NPLLHYLDIVRAP
Sbjct 177 ILATRYRDIGPLLASVVQLLFFMTPIIWNESTLQQQGAGSWAKIVEINPLLHYLDIVRAP 236
Query 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
LLGA QELRHWLVVL TV+GW AAFAMRQYR RVPYWV
Sbjct 237 LLGADQELRHWLVVLAFTVIGWTFAAFAMRQYRGRVPYWV 276
>gi|108801956|ref|YP_642153.1| ABC-2 type transporter [Mycobacterium sp. MCS]
gi|119871108|ref|YP_941060.1| ABC-2 type transporter [Mycobacterium sp. KMS]
gi|126437937|ref|YP_001073628.1| ABC-2 type transporter [Mycobacterium sp. JLS]
gi|108772375|gb|ABG11097.1| ABC-2 type transporter [Mycobacterium sp. MCS]
gi|119697197|gb|ABL94270.1| ABC-2 type transporter [Mycobacterium sp. KMS]
gi|126237737|gb|ABO01138.1| ABC-2 type transporter [Mycobacterium sp. JLS]
Length=276
Score = 451 bits (1160), Expect = 6e-125, Method: Compositional matrix adjust.
Identities = 227/280 (82%), Positives = 251/280 (90%), Gaps = 4/280 (1%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
M+F +A A QS+T+AR DL +GF + ELWLHLGWQDIKQRYRRSVLGPFWITIAT
Sbjct 1 MSFDEASA----QSKTMARAWRDLREGFGKRELWLHLGWQDIKQRYRRSVLGPFWITIAT 56
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
G TAVAMG LYSKLF+LELSEHLPYVT+GLIVWNLINA+IL+GAEVF+ANEGLIKQLP P
Sbjct 57 GATAVAMGLLYSKLFKLELSEHLPYVTMGLIVWNLINASILEGAEVFIANEGLIKQLPTP 116
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVWRQMI FAHNI+I+ VIAII+PKPW W DL+ PALALI LNCVWVSLCFG
Sbjct 117 LSVHVYRLVWRQMILFAHNIIIFVVIAIIYPKPWHWTDLAVFPALALIMLNCVWVSLCFG 176
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
ILATRYRDIGPLL S+VQLLFFMTPIIWN+ TL+ QGAG+W+ IVELNPLLHYLDIVRAP
Sbjct 177 ILATRYRDIGPLLNSIVQLLFFMTPIIWNEATLQAQGAGQWAKIVELNPLLHYLDIVRAP 236
Query 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
LLGA QE+RHW+VVLVLTV+GW AAFAM+QYRARVPYWV
Sbjct 237 LLGADQEVRHWIVVLVLTVIGWTFAAFAMKQYRARVPYWV 276
>gi|294995303|ref|ZP_06800994.1| hypothetical protein Mtub2_12528 [Mycobacterium tuberculosis
210]
Length=221
Score = 442 bits (1138), Expect = 2e-122, Method: Compositional matrix adjust.
Identities = 221/221 (100%), Positives = 221/221 (100%), Gaps = 0/221 (0%)
Query 60 TGTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPA 119
TGTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPA
Sbjct 1 TGTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPA 60
Query 120 PLSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCF 179
PLSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCF
Sbjct 61 PLSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCF 120
Query 180 GILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRA 239
GILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRA
Sbjct 121 GILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRA 180
Query 240 PLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
PLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV
Sbjct 181 PLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 221
>gi|120406562|ref|YP_956391.1| ABC-2 type transporter [Mycobacterium vanbaalenii PYR-1]
gi|119959380|gb|ABM16385.1| ABC-2 type transporter [Mycobacterium vanbaalenii PYR-1]
Length=276
Score = 442 bits (1138), Expect = 2e-122, Method: Compositional matrix adjust.
Identities = 231/280 (83%), Positives = 251/280 (90%), Gaps = 4/280 (1%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
MT MDA A QSRT AR GDLV GF + ELWLHLGWQDIKQRYRRSVLGPFWITIAT
Sbjct 1 MTIMDAAA----QSRTFARAWGDLVAGFGKRELWLHLGWQDIKQRYRRSVLGPFWITIAT 56
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
GTTAVAMGGLYS LF+LELSEHLPYVTLGLIVWNLINA+IL+GAEVF+ANEGLIKQLP P
Sbjct 57 GTTAVAMGGLYSMLFKLELSEHLPYVTLGLIVWNLINASILEGAEVFIANEGLIKQLPTP 116
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVWRQMI FAHNI+I+ +IAI++PKPW+WADL+ +PAL LI NCVWV+LCFG
Sbjct 117 LSVHVYRLVWRQMILFAHNIIIFVIIAIVYPKPWNWADLAVIPALGLIAANCVWVALCFG 176
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
ILATRYRDIGPLL S+VQLLFFMTPIIWN+ TL+ QGAG W+ +VELNPLLHYLDIVRAP
Sbjct 177 ILATRYRDIGPLLGSLVQLLFFMTPIIWNESTLQAQGAGGWAKVVELNPLLHYLDIVRAP 236
Query 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
LLGA QELRHW+VVLVLTVVGW AA AMRQYRARVPYWV
Sbjct 237 LLGADQELRHWVVVLVLTVVGWTFAALAMRQYRARVPYWV 276
>gi|145221776|ref|YP_001132454.1| ABC-2 type transporter [Mycobacterium gilvum PYR-GCK]
gi|315446486|ref|YP_004079365.1| ABC-type polysaccharide/polyol phosphate export systems, permease
[Mycobacterium sp. Spyr1]
gi|145214262|gb|ABP43666.1| ABC-2 type transporter [Mycobacterium gilvum PYR-GCK]
gi|315264789|gb|ADU01531.1| ABC-type polysaccharide/polyol phosphate export systems, permease
component [Mycobacterium sp. Spyr1]
Length=276
Score = 434 bits (1117), Expect = 5e-120, Method: Compositional matrix adjust.
Identities = 230/280 (83%), Positives = 249/280 (89%), Gaps = 4/280 (1%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
MT MDA A +SRT R GDLV GF + ELWLHLGWQDIKQRYRRSVLGPFWITIAT
Sbjct 1 MTIMDAAA----RSRTFGRAWGDLVAGFGKRELWLHLGWQDIKQRYRRSVLGPFWITIAT 56
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
GTTAVAMGGLYS LF+LELSEHLPYVTLGLIVWNLINA+IL+GA+VFVANEGLIKQLP P
Sbjct 57 GTTAVAMGGLYSMLFKLELSEHLPYVTLGLIVWNLINASILEGADVFVANEGLIKQLPTP 116
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVWRQM+ FAHNI+I+ +IAII+PKPWSWADLS +PAL L+ LNCVWV+LCFG
Sbjct 117 LSVHVYRLVWRQMLLFAHNIIIFVIIAIIYPKPWSWADLSVIPALLLLALNCVWVALCFG 176
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP 240
ILATRYRDI PLL S+VQLLFFMTPIIWN+ TL+ QGAG W+ IVELNPLLHYLDIVRAP
Sbjct 177 ILATRYRDISPLLGSLVQLLFFMTPIIWNESTLQAQGAGGWAKIVELNPLLHYLDIVRAP 236
Query 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
LLGA QELRHW+VVLVLTVVGW AA AMRQYRARV YWV
Sbjct 237 LLGAEQELRHWVVVLVLTVVGWGFAALAMRQYRARVAYWV 276
>gi|229492607|ref|ZP_04386410.1| O-antigen export system, permease protein [Rhodococcus erythropolis
SK121]
gi|229320593|gb|EEN86411.1| O-antigen export system, permease protein [Rhodococcus erythropolis
SK121]
Length=282
Score = 394 bits (1011), Expect = 1e-107, Method: Compositional matrix adjust.
Identities = 193/274 (71%), Positives = 220/274 (81%), Gaps = 0/274 (0%)
Query 7 QASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVA 66
+A SRT AR DL +G ELW HLGWQDIKQRYRRS+LGPFWITIATGTTAVA
Sbjct 9 KAPIAPASRTFARAIQDLREGLGHRELWFHLGWQDIKQRYRRSILGPFWITIATGTTAVA 68
Query 67 MGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVY 126
MG LYS LF L+++E LPYVTLG IVWN+I+ AIL+GAEVF++NEGLIKQLP PLSVHVY
Sbjct 69 MGILYSSLFNLDVAEFLPYVTLGFIVWNMISGAILEGAEVFISNEGLIKQLPTPLSVHVY 128
Query 127 RLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGILATRY 186
RLVWRQ+I FAHN VIY VI I+FPK SW DLSF+PALALI +N VWVSL FGIL+TRY
Sbjct 129 RLVWRQLILFAHNFVIYIVILIVFPKQLSWTDLSFIPALALIAINAVWVSLVFGILSTRY 188
Query 187 RDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAPLLGAHQ 246
RDIGPLL SVVQLLFFMTPIIW +++L+ + I ELNPL H+LDIVR PLLG Q
Sbjct 189 RDIGPLLASVVQLLFFMTPIIWTEKSLQGTANAERARIAELNPLYHFLDIVRTPLLGGDQ 248
Query 247 ELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
+L HW++VL +TVVGW LA AMR YR+RV YWV
Sbjct 249 QLYHWVIVLAVTVVGWGLALLAMRNYRSRVAYWV 282
>gi|169627306|ref|YP_001700955.1| O-antigen/lipopolysaccharide transport integral membrane protein
ABC transporter RfbD [Mycobacterium abscessus ATCC 19977]
gi|169239273|emb|CAM60301.1| Probable O-antigen/lipopolysaccharide transport integral membrane
protein ABC transporter RfbD [Mycobacterium abscessus]
Length=295
Score = 384 bits (985), Expect = 1e-104, Method: Compositional matrix adjust.
Identities = 182/272 (67%), Positives = 222/272 (82%), Gaps = 1/272 (0%)
Query 9 SFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMG 68
+ SRT R DL +GF +LWL LGWQDIKQRYRRSVLGPFWITIATG+TA+AMG
Sbjct 25 ELSSDSRTFKRAWRDLSEGFEHRQLWLQLGWQDIKQRYRRSVLGPFWITIATGSTALAMG 84
Query 69 GLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRL 128
LYS+LF+L L+EHLPYVT+GLIVWNL NAAIL+G++VFVANEGLIKQLP PLSVHVYRL
Sbjct 85 ILYSQLFKLPLAEHLPYVTIGLIVWNLFNAAILEGSDVFVANEGLIKQLPTPLSVHVYRL 144
Query 129 VWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRD 188
VWRQ++ FAHNI+I+ ++ ++ W + DLSF+PAL LI LNC+WVSL FG+LATRYRD
Sbjct 145 VWRQLLLFAHNIIIFLIVVAVYTPHWHFTDLSFIPALVLITLNCLWVSLVFGVLATRYRD 204
Query 189 IGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAPLLGAHQEL 248
I PLL S+VQLLFFMTPIIWN+ L Q G+ +++V+LNP +H+L I+R PLLG Q+L
Sbjct 205 ISPLLGSLVQLLFFMTPIIWNENML-NQRVGKLATVVQLNPFVHFLAIIRDPLLGLDQQL 263
Query 249 RHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
HW++ L +TVVGW++A MRQYRARVPYWV
Sbjct 264 HHWIIALSITVVGWIVAIVVMRQYRARVPYWV 295
>gi|226303749|ref|YP_002763707.1| ABC transporter permease protein [Rhodococcus erythropolis PR4]
gi|226182864|dbj|BAH30968.1| putative ABC transporter permease protein [Rhodococcus erythropolis
PR4]
Length=290
Score = 349 bits (895), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 174/280 (63%), Positives = 213/280 (77%), Gaps = 5/280 (1%)
Query 5 DAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTA 64
DA A + S+T R DL DG + ELWL LGWQDIKQRYRRSV+GPFWITIATG A
Sbjct 12 DAPAPV-SDSQTFRRAFKDLRDGLNQRELWLSLGWQDIKQRYRRSVIGPFWITIATGVQA 70
Query 65 VAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVH 124
A+G LY+ L + L E LPYVT+GLIVWNLINA+I++G+EVFVANEGLIKQLP+ LSVH
Sbjct 71 TAIGILYAALLDMPLQEFLPYVTVGLIVWNLINASIIEGSEVFVANEGLIKQLPSALSVH 130
Query 125 VYRLVWRQMIFFAHNIVIYFVIAIIFP--KPWSWADLSFLPALALIFLNCVWVSLCFGIL 182
+YRLVWRQM+FFAHN++IY ++ I F + SWA L+ +PAL LI LN +WVS+ FGI
Sbjct 131 IYRLVWRQMLFFAHNLLIYVIMVIAFGVWRNLSWASLAAIPALGLIVLNALWVSIVFGIF 190
Query 183 ATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAG--RWSSIVELNPLLHYLDIVRAP 240
ATRYRDI P+L S+ LLF +TPI+W ++L QG + I ELNPL HYLDIVRAP
Sbjct 191 ATRYRDIAPILSSLTLLLFVLTPIMWTTQSLEAQGGAVRDRAKIAELNPLFHYLDIVRAP 250
Query 241 LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
++G QEL HW +V+ +TVVGW +A A+R+YRARVPYWV
Sbjct 251 MIGQPQELYHWYIVITITVVGWAVALLALRKYRARVPYWV 290
>gi|326385010|ref|ZP_08206683.1| ABC-2 type transporter [Gordonia neofelifaecis NRRL B-59395]
gi|326196301|gb|EGD53502.1| ABC-2 type transporter [Gordonia neofelifaecis NRRL B-59395]
Length=287
Score = 340 bits (872), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 164/271 (61%), Positives = 200/271 (74%), Gaps = 2/271 (0%)
Query 12 TQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGLY 71
+ S+T AR DLVDGFR ELWLHLGW DIKQRY+RS+LGP WIT+ATG TAVAMG LY
Sbjct 17 SDSKTFARGIKDLVDGFRNSELWLHLGWTDIKQRYKRSILGPLWITVATGVTAVAMGILY 76
Query 72 SKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVWR 131
+LF ++ LPYVTLG I W I +ILDG+ VF NEGLIKQLPAP SVHVYR+VWR
Sbjct 77 GELFHQDIKVFLPYVTLGFIFWGFIETSILDGSVVFSTNEGLIKQLPAPTSVHVYRVVWR 136
Query 132 QMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRDIGP 191
+I FAHNIVIY ++ ++FP+P W L PAL L LN VW ++ FGI++TR+RDIG
Sbjct 137 SLIIFAHNIVIYLILLVVFPQPLGWTALLVFPALLLYALNAVWTTIVFGIMSTRFRDIGQ 196
Query 192 LLFSVVQLLFFMTPIIWNDETLRRQGAGRWS--SIVELNPLLHYLDIVRAPLLGAHQELR 249
LL + V+L+FFMTPIIW+ ++L GA S +VELNP+ HYL+I R PLLG H L
Sbjct 197 LLTTAVRLVFFMTPIIWSAQSLSSTGADASSRLKLVELNPMYHYLEIARGPLLGQHVALY 256
Query 250 HWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
HWL+V+ T++GW+ A F MR YRARV YWV
Sbjct 257 HWLIVIGCTLIGWVAAMFVMRNYRARVAYWV 287
>gi|226363388|ref|YP_002781170.1| ABC transporter permease protein [Rhodococcus opacus B4]
gi|226241877|dbj|BAH52225.1| putative ABC transporter permease protein [Rhodococcus opacus
B4]
Length=290
Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 167/273 (62%), Positives = 206/273 (76%), Gaps = 4/273 (1%)
Query 12 TQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGLY 71
+ S+T R DL DGF + ELWL LGWQDIKQRYRRSV+GPFWITIATG A AMG LY
Sbjct 18 SDSQTFRRAFKDLRDGFAQRELWLSLGWQDIKQRYRRSVIGPFWITIATGVQAAAMGILY 77
Query 72 SKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVWR 131
S L + L E LPYVT+GLIVWNLI+A+IL+G+EVF+ANEGLIKQLP+ LSVHVYRLVWR
Sbjct 78 SALLDIPLDEFLPYVTVGLIVWNLISASILEGSEVFIANEGLIKQLPSALSVHVYRLVWR 137
Query 132 QMIFFAHNIVIYFVIAIIFP--KPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRDI 189
Q++ FAHN+VIY ++ F + +W L+ +PA+ALI +N WVS+ FGI +TRYRDI
Sbjct 138 QLLLFAHNLVIYVIMLFAFGVWRHLTWMSLAAIPAIALIVVNAAWVSIMFGIFSTRYRDI 197
Query 190 GPLLFSVVQLLFFMTPIIWNDETLRRQG--AGRWSSIVELNPLLHYLDIVRAPLLGAHQE 247
P+L S+ LLF +TPI+W ++L QG A + ELNPL HYLDIVRAP++G Q+
Sbjct 198 APILGSMTLLLFVLTPIMWTTQSLEAQGGQAAERVKLAELNPLFHYLDIVRAPMIGQDQQ 257
Query 248 LRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
HW +VL +TVVGW A A+R+YRARVPYWV
Sbjct 258 AYHWYIVLAITVVGWAAAILALRKYRARVPYWV 290
>gi|111021098|ref|YP_704070.1| ABC O-antigen transporter permease [Rhodococcus jostii RHA1]
gi|110820628|gb|ABG95912.1| ABC O-antigen transporter, permease component [Rhodococcus jostii
RHA1]
Length=292
Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 167/273 (62%), Positives = 206/273 (76%), Gaps = 4/273 (1%)
Query 12 TQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGLY 71
+ S+T R DL DGF + ELWL LGWQDIKQRYRRSV+GPFWITIATG A AMG LY
Sbjct 20 SDSQTFRRAFKDLRDGFAQRELWLSLGWQDIKQRYRRSVIGPFWITIATGVQAAAMGILY 79
Query 72 SKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVWR 131
S L + L E LPYVT+GLIVWNLI+A+IL+G+EVF+ANEGLIKQLP+ LSVHVYRLVWR
Sbjct 80 SALLDIPLDEFLPYVTVGLIVWNLISASILEGSEVFIANEGLIKQLPSALSVHVYRLVWR 139
Query 132 QMIFFAHNIVIYFVIAIIFP--KPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRDI 189
Q++ FAHN+VIY ++ F + +W L+ +PA+ALI +N WVS+ FGI +TRYRDI
Sbjct 140 QLLLFAHNLVIYVIMLFAFGVWRHLTWMSLAAIPAIALIVVNAAWVSIMFGIFSTRYRDI 199
Query 190 GPLLFSVVQLLFFMTPIIWNDETLRRQG--AGRWSSIVELNPLLHYLDIVRAPLLGAHQE 247
P+L S+ LLF +TPI+W ++L QG A + ELNPL HYLDIVRAP++G Q+
Sbjct 200 APILGSMTLLLFVLTPIMWTTQSLEAQGGQAAERVKLAELNPLFHYLDIVRAPMIGQDQQ 259
Query 248 LRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
HW +VL +TVVGW A A+R+YRARVPYWV
Sbjct 260 AYHWYIVLAITVVGWAAAILALRKYRARVPYWV 292
>gi|54022183|ref|YP_116425.1| putative ABC transporter membrane protein [Nocardia farcinica
IFM 10152]
gi|54013691|dbj|BAD55061.1| putative ABC transporter membrane protein [Nocardia farcinica
IFM 10152]
Length=294
Score = 338 bits (867), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 169/274 (62%), Positives = 212/274 (78%), Gaps = 6/274 (2%)
Query 12 TQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGLY 71
+ S+T R D+ DGF + ELWL LGWQDIKQRYRRSVLGPFWITIATG A AMG LY
Sbjct 22 SDSQTFRRAFRDMRDGFGQRELWLSLGWQDIKQRYRRSVLGPFWITIATGVQAAAMGILY 81
Query 72 SKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVWR 131
+ L L E+LPYVT+GLIVWN+I+A+IL+G++VF+ANEGLIKQLP+ LSVHVYRLVWR
Sbjct 82 ATLLGQPLREYLPYVTVGLIVWNVISASILEGSDVFIANEGLIKQLPSALSVHVYRLVWR 141
Query 132 QMIFFAHNIVIYFVIAIIFP--KPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRDI 189
QM+FFAHN+VIY V+ F + W+ L LPA+ LIFLN +WVS+ FGI +TRYRDI
Sbjct 142 QMLFFAHNLVIYLVLLAAFGVWENLGWSSLLALPAIGLIFLNSMWVSIVFGIFSTRYRDI 201
Query 190 GPLLFSVVQLLFFMTPIIWNDETLRRQ---GAGRWSSIVELNPLLHYLDIVRAPLLGAHQ 246
P+L S+ +LF +TP++W +TL Q G+ R + +VE+ P HYL+IVRAPLLG Q
Sbjct 202 APILGSMTLMLFVLTPVMWTTKTLEDQIGTGSER-ARLVEIIPTFHYLEIVRAPLLGEPQ 260
Query 247 ELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
LRHW++V +TVVGW++A FAM+QYR+RVPYWV
Sbjct 261 ALRHWVIVGAITVVGWIVAVFAMKQYRSRVPYWV 294
>gi|262200307|ref|YP_003271515.1| ABC transporter [Gordonia bronchialis DSM 43247]
gi|262083654|gb|ACY19622.1| ABC-2 type transporter [Gordonia bronchialis DSM 43247]
Length=288
Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 171/273 (63%), Positives = 206/273 (76%), Gaps = 3/273 (1%)
Query 11 QTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGL 70
+ SRTL R DL DG ELWLHLGWQDIKQRYRRSVLGP WITIATG TA+AMG L
Sbjct 16 SSDSRTLKRAVKDLRDGLDNRELWLHLGWQDIKQRYRRSVLGPLWITIATGVTAIAMGLL 75
Query 71 YSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVW 130
Y +LF +L + LPYV LG I W I ++IL+G+E+F NEGLIKQLPAP+SVHVYR+VW
Sbjct 76 YGELFDQDLHKFLPYVALGFIFWGFIESSILEGSEIFAKNEGLIKQLPAPVSVHVYRVVW 135
Query 131 RQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRDIG 190
RQ+I FAHN+VI +I I+FP P+ ++ L +PAL L LN VWVS+ FGIL+TR+RDIG
Sbjct 136 RQLIIFAHNVVIIVIIFIVFPPPFGFSQLLVIPALLLFVLNAVWVSIVFGILSTRFRDIG 195
Query 191 PLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSS---IVELNPLLHYLDIVRAPLLGAHQE 247
LL +VV+L+FFMTPIIW+ ++L AG SS IVE+NP+ HYL+I R LLG H E
Sbjct 196 QLLTTVVRLVFFMTPIIWSAQSLSSTKAGESSSRLRIVEINPMFHYLEISRGELLGDHVE 255
Query 248 LRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
L HWL+VL T VGW++A F MR YRARV YWV
Sbjct 256 LYHWLIVLGCTAVGWLMAMFVMRNYRARVAYWV 288
>gi|333917828|ref|YP_004491409.1| putative ABC transporter permease [Amycolicicoccus subflavus
DQS3-9A1]
gi|333480049|gb|AEF38609.1| Putative ABC transporter permease protein [Amycolicicoccus subflavus
DQS3-9A1]
Length=302
Score = 325 bits (833), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 165/274 (61%), Positives = 195/274 (72%), Gaps = 2/274 (0%)
Query 9 SFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMG 68
SRT AR GDL G + ELWL LGWQDIKQRYRRSV+GPFWITIATG AVAMG
Sbjct 29 EITANSRTFARAFGDLRTGLSQRELWLQLGWQDIKQRYRRSVIGPFWITIATGVQAVAMG 88
Query 69 GLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRL 128
LYS L +EL LP+VT+GLI+W +I AI+DGAEVF+ NEGLIK LP+ LSVHVYRL
Sbjct 89 LLYSVLLEVELRTFLPHVTVGLIIWTMIQGAIIDGAEVFIKNEGLIKFLPSALSVHVYRL 148
Query 129 VWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRD 188
WR + F HNI+IY ++ IF W+ L +P L LI LN VWV++ FGI ATRYRD
Sbjct 149 AWRLFLLFVHNILIYVIMLAIFRPSLDWSSLLAIPGLVLIMLNVVWVTMFFGIFATRYRD 208
Query 189 IGPLLFSVVQLLFFMTPIIWNDETLRRQG--AGRWSSIVELNPLLHYLDIVRAPLLGAHQ 246
I P+L S+ LLFFMTPI+W E L +G A + IVE+NPL HYL+IVRAP+LG
Sbjct 209 IQPILNSMTLLLFFMTPIVWTTEGLIARGGEAADRARIVEINPLYHYLEIVRAPMLGNSV 268
Query 247 ELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
L HW +V+ TVVGW+L A+R YRARVPYWV
Sbjct 269 ALYHWGIVIACTVVGWVLTIVALRNYRARVPYWV 302
>gi|300857536|ref|YP_003782519.1| hypothetical protein cpfrc_00119 [Corynebacterium pseudotuberculosis
FRC41]
gi|300684990|gb|ADK27912.1| putative membrane protein [Corynebacterium pseudotuberculosis
FRC41]
gi|302205275|gb|ADL09617.1| O-antigen export system ATP-binding protein R [Corynebacterium
pseudotuberculosis C231]
gi|302329828|gb|ADL20022.1| O-antigen export system ATP-binding protein R [Corynebacterium
pseudotuberculosis 1002]
gi|308275515|gb|ADO25414.1| ABC-type polysaccharide/polyol phosphate export systems, permease
component [Corynebacterium pseudotuberculosis I19]
gi|341823943|gb|AEK91464.1| O-antigen export system ATP-binding protein R [Corynebacterium
pseudotuberculosis PAT10]
Length=301
Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 160/282 (57%), Positives = 210/282 (75%), Gaps = 2/282 (0%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
+T D ++S+TLA DLV GF++HELWL LGWQDIKQRYRRSVLGP WITIAT
Sbjct 20 ITHADHVDPKPSRSKTLAAAWSDLVRGFKQHELWLQLGWQDIKQRYRRSVLGPLWITIAT 79
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
G A+A+G LYS LF++ ++E LP+VT+GLI+WN I+ I +GAEVF+ NEGLIKQLP+
Sbjct 80 GVMALALGLLYSVLFKIPVAEFLPHVTVGLIMWNFISGCIKEGAEVFITNEGLIKQLPSA 139
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVW+Q +F HN+VI+F++ ++FP+P W L +PA+AL+ +N VWVS+ FG
Sbjct 140 LSVHVYRLVWKQTLFLFHNMVIWFILMLVFPRPLGWDILLGIPAIALLVVNGVWVSMFFG 199
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAG--RWSSIVELNPLLHYLDIVR 238
I+ATRYRD PLL ++ QLLF++TPI+W +TL QG + + LNPL HY+++VR
Sbjct 200 IIATRYRDFSPLLEALTQLLFYVTPIVWTTQTLYAQGGAVSERAKLAMLNPLYHYMEVVR 259
Query 239 APLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
APL+GA +W VV+ TVVG LA AM+Q+R RV YWV
Sbjct 260 APLIGAPINPLNWYVVIGCTVVGTFLAMLAMKQWRFRVSYWV 301
>gi|312137751|ref|YP_004005087.1| ABC transporter transmembrane protein [Rhodococcus equi 103S]
gi|325675097|ref|ZP_08154783.1| O-antigen export ABC superfamily ATP binding cassette transporter,
permease protein [Rhodococcus equi ATCC 33707]
gi|311887090|emb|CBH46399.1| putative ABC-2 type transporter integral membrane subunit [Rhodococcus
equi 103S]
gi|325554058|gb|EGD23734.1| O-antigen export ABC superfamily ATP binding cassette transporter,
permease protein [Rhodococcus equi ATCC 33707]
Length=293
Score = 321 bits (823), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 166/273 (61%), Positives = 210/273 (77%), Gaps = 4/273 (1%)
Query 12 TQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGLY 71
+ S+T R DL DGF + ELWL+LGWQDIKQRYRRSV+GPFWITIATG A AMG LY
Sbjct 21 SDSQTFRRAFKDLRDGFAQRELWLNLGWQDIKQRYRRSVIGPFWITIATGVQATAMGILY 80
Query 72 SKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVWR 131
S L + + E LPYVT+GLIVW +I+A+IL+G+EVF+ANEGLIKQLP+ LSVHVYRLVWR
Sbjct 81 SALLGMSIKEFLPYVTVGLIVWAMISASILEGSEVFIANEGLIKQLPSALSVHVYRLVWR 140
Query 132 QMIFFAHNIVIYFVIAIIFP--KPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRDI 189
Q++FFAHN++IY ++ + F + +W DL+ +PALAL+ LN +WVS+ FGI ATRYRDI
Sbjct 141 QILFFAHNLLIYVIMLVAFGVWRNLTWPDLAAIPALALLVLNALWVSIVFGIFATRYRDI 200
Query 190 GPLLFSVVQLLFFMTPIIWNDETLRRQGA--GRWSSIVELNPLLHYLDIVRAPLLGAHQE 247
P+L S+ LLF +TPI W+ E L+ QG + I ELNPL H+L+IVRAP+LG Q+
Sbjct 201 APILGSLTLLLFVLTPIFWSTEALKAQGGQVAERAKIAELNPLFHFLEIVRAPMLGKDQQ 260
Query 248 LRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
HW +VL +T VGW +A FA+R+YRARV YWV
Sbjct 261 AYHWYIVLAITAVGWAIALFALRKYRARVAYWV 293
>gi|337289778|ref|YP_004628799.1| hypothetical protein CULC22_00162 [Corynebacterium ulcerans BR-AD22]
gi|334695907|gb|AEG80704.1| putative membrane protein [Corynebacterium ulcerans 809]
gi|334698084|gb|AEG82880.1| putative membrane protein [Corynebacterium ulcerans BR-AD22]
Length=301
Score = 321 bits (823), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 158/282 (57%), Positives = 210/282 (75%), Gaps = 2/282 (0%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
+T +D ++S+TLA DLV GF++HELWL LGWQDIKQRYRRSVLGP WITIAT
Sbjct 20 ITHVDDVDPKPSRSKTLAAAWSDLVRGFKQHELWLQLGWQDIKQRYRRSVLGPLWITIAT 79
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
G A+A+G LYS LF++ ++E LP+VT+GLI+WN I+ I +G+EVF+ NEGLIKQLP+
Sbjct 80 GVMALALGLLYSVLFKIPVAEFLPHVTVGLIMWNFISGCIKEGSEVFITNEGLIKQLPSA 139
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVW+Q +F HN+VI+ ++ ++FP+P W L +PA+AL+ +N VWVS+ FG
Sbjct 140 LSVHVYRLVWKQTLFLFHNMVIWLILMLVFPRPLGWDILLGIPAIALLVVNGVWVSMFFG 199
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAG--RWSSIVELNPLLHYLDIVR 238
I+ATRYRD PLL ++ QLLF++TPI+W +TL QG + + LNPL HY+++VR
Sbjct 200 IIATRYRDFSPLLEALTQLLFYVTPIVWTTQTLYAQGGAVSERAKLAMLNPLYHYMEVVR 259
Query 239 APLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
APL+GA +W VV+ TVVG LA AM+Q+R RV YWV
Sbjct 260 APLIGAPINPLNWYVVIGCTVVGTFLAMLAMKQWRFRVSYWV 301
>gi|343926177|ref|ZP_08765686.1| putative ABC transporter permease protein [Gordonia alkanivorans
NBRC 16433]
gi|343763806|dbj|GAA12612.1| putative ABC transporter permease protein [Gordonia alkanivorans
NBRC 16433]
Length=287
Score = 321 bits (823), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 165/273 (61%), Positives = 192/273 (71%), Gaps = 4/273 (1%)
Query 11 QTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGL 70
++SRT AR DL DG ELW HLGWQDI+QRYRRSVLGP WITIATG TA AMG L
Sbjct 16 SSESRTFARAVKDLRDGLASRELWFHLGWQDIRQRYRRSVLGPLWITIATGVTATAMGLL 75
Query 71 YSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVW 130
Y +LF +++ LPYV LG I WN I +ILDGAEVF NEGLIKQLPAP+SVHVYR+VW
Sbjct 76 YGELFGMDIKVFLPYVALGFIFWNFIQTSILDGAEVFAKNEGLIKQLPAPVSVHVYRVVW 135
Query 131 RQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRDIG 190
R +I FAHN+VI +I IF P +W +PA+ L LN VWV++ FGIL+TR+RDIG
Sbjct 136 RSLIIFAHNVVIIVIIFAIFTPPLNWTVFLIVPAIGLYVLNAVWVTIVFGILSTRFRDIG 195
Query 191 PLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSS---IVELNPLLHYLDIVRAPLLGAHQE 247
LL + VQL+FFMTPIIW +L G SS +VELNP+ HYL+I R PLLG E
Sbjct 196 QLLTTAVQLVFFMTPIIWTTSSL-SSATGETSSRLKLVELNPMFHYLEIARGPLLGEPVE 254
Query 248 LRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
HW VVL T VGW+L MR YRARV YWV
Sbjct 255 FYHWAVVLGCTAVGWVLGMLVMRNYRARVAYWV 287
>gi|38232800|ref|NP_938567.1| ABC transporter permease [Corynebacterium diphtheriae NCTC 13129]
gi|38199058|emb|CAE48679.1| Putative ABC transport system, permease protein [Corynebacterium
diphtheriae]
Length=286
Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 159/282 (57%), Positives = 206/282 (74%), Gaps = 2/282 (0%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
+T D A +QS+TLA DLV GF + ELWL LGWQDIKQRYRRSVLGP WITIAT
Sbjct 5 ITNTDTTADEPSQSKTLAAAWADLVRGFSQRELWLQLGWQDIKQRYRRSVLGPLWITIAT 64
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
G A+A+G LYS LF++ +++ LP+VT+GLI+WN I I +G+EVF+ANEGLIKQLP+
Sbjct 65 GVMALALGLLYSVLFKIPVAQFLPHVTVGLIMWNFIAGCIKEGSEVFIANEGLIKQLPSA 124
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVW+Q +F HN+VI+ ++ IFP+P W L +PALAL+ N VWV++ FG
Sbjct 125 LSVHVYRLVWKQTLFLMHNMVIWVILMAIFPRPLGWDILLGIPALALLIANGVWVTMFFG 184
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAG--RWSSIVELNPLLHYLDIVR 238
I+ATRYRD PLL ++ QLLF++TPI+W ETL QG + + LNPL HY++++R
Sbjct 185 IVATRYRDFSPLLEALTQLLFYVTPIVWTTETLYSQGGAVSERAKLAMLNPLYHYMEVIR 244
Query 239 APLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
APL+GA +W+VV TV+G +A AMRQ+R RV YWV
Sbjct 245 APLIGAPIHPLNWIVVGCCTVIGLFIAMLAMRQWRFRVSYWV 286
>gi|19551452|ref|NP_599454.1| ABC-type transporter, permease component [Corynebacterium glutamicum
ATCC 13032]
Length=301
Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 156/282 (56%), Positives = 207/282 (74%), Gaps = 2/282 (0%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
+T + + +QS T D+V GF++HELWL LGWQDIKQRYRRSVLGP WITIAT
Sbjct 20 ITAVKSDTVPNSQSMTFGAAWNDIVRGFKQHELWLQLGWQDIKQRYRRSVLGPLWITIAT 79
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
G A+A+G LYS LF++ ++E LP+VT+GLI+WN I+ I +G+++F+ NEGLIKQLP+
Sbjct 80 GVMALALGLLYSVLFKIPIAEFLPHVTVGLIIWNFISGCIKEGSDIFIDNEGLIKQLPSA 139
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVW+Q +F AHN+VI+ ++ +IFP+P W L +PA+ L+ +N VWV + FG
Sbjct 140 LSVHVYRLVWKQALFLAHNLVIWVILMMIFPRPLGWDVLLIIPAMFLLVINGVWVVMFFG 199
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGA--GRWSSIVELNPLLHYLDIVR 238
I+ATRYRD+ PLL + QLLF++TPI+W TL+ Q A G + + ELNPL HYL+IVR
Sbjct 200 IIATRYRDVSPLLEAGTQLLFYVTPIVWMTSTLQSQSAEIGNRARLAELNPLYHYLEIVR 259
Query 239 APLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
AP++GA HW +VL T VG LA AM+Q+R RV YWV
Sbjct 260 APMVGADLPAYHWWIVLAFTFVGLGLALLAMKQWRFRVSYWV 301
>gi|145294325|ref|YP_001137146.1| hypothetical protein cgR_0280 [Corynebacterium glutamicum R]
gi|140844245|dbj|BAF53244.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344044004|gb|EGV39686.1| ABC-type transporter, permease component [Corynebacterium glutamicum
S9114]
Length=298
Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 156/282 (56%), Positives = 207/282 (74%), Gaps = 2/282 (0%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
+T + + +QS T D+V GF++HELWL LGWQDIKQRYRRSVLGP WITIAT
Sbjct 17 ITAVKSDTVPNSQSMTFGAAWNDIVRGFKQHELWLQLGWQDIKQRYRRSVLGPLWITIAT 76
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
G A+A+G LYS LF++ ++E LP+VT+GLI+WN I+ I +G+++F+ NEGLIKQLP+
Sbjct 77 GVMALALGLLYSVLFKIPIAEFLPHVTVGLIIWNFISGCIKEGSDIFIDNEGLIKQLPSA 136
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVW+Q +F AHN+VI+ ++ +IFP+P W L +PA+ L+ +N VWV + FG
Sbjct 137 LSVHVYRLVWKQALFLAHNLVIWVILMMIFPRPLGWDVLLIIPAMFLLVINGVWVVMFFG 196
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGA--GRWSSIVELNPLLHYLDIVR 238
I+ATRYRD+ PLL + QLLF++TPI+W TL+ Q A G + + ELNPL HYL+IVR
Sbjct 197 IIATRYRDVSPLLEAGTQLLFYVTPIVWMTSTLQSQSAEIGNRARLAELNPLYHYLEIVR 256
Query 239 APLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
AP++GA HW +VL T VG LA AM+Q+R RV YWV
Sbjct 257 APMIGADLPAYHWWIVLAFTFVGLGLALLAMKQWRFRVSYWV 298
>gi|62389098|ref|YP_224500.1| polysaccharide/polyol phosphate export systems, permease component
[Corynebacterium glutamicum ATCC 13032]
gi|41324431|emb|CAF18771.1| polysaccharide/polyol phosphate export systems, permease component
[Corynebacterium glutamicum ATCC 13032]
Length=298
Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 156/282 (56%), Positives = 207/282 (74%), Gaps = 2/282 (0%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
+T + + +QS T D+V GF++HELWL LGWQDIKQRYRRSVLGP WITIAT
Sbjct 17 ITAVKSDTVPNSQSMTFGAAWNDIVRGFKQHELWLQLGWQDIKQRYRRSVLGPLWITIAT 76
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
G A+A+G LYS LF++ ++E LP+VT+GLI+WN I+ I +G+++F+ NEGLIKQLP+
Sbjct 77 GVMALALGLLYSVLFKIPIAEFLPHVTVGLIIWNFISGCIKEGSDIFIDNEGLIKQLPSA 136
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVW+Q +F AHN+VI+ ++ +IFP+P W L +PA+ L+ +N VWV + FG
Sbjct 137 LSVHVYRLVWKQALFLAHNLVIWVILMMIFPRPLGWDVLLIIPAMFLLVINGVWVVMFFG 196
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGA--GRWSSIVELNPLLHYLDIVR 238
I+ATRYRD+ PLL + QLLF++TPI+W TL+ Q A G + + ELNPL HYL+IVR
Sbjct 197 IIATRYRDVSPLLEAGTQLLFYVTPIVWMTSTLQSQSAEIGNRARLAELNPLYHYLEIVR 256
Query 239 APLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
AP++GA HW +VL T VG LA AM+Q+R RV YWV
Sbjct 257 APMVGADLPAYHWWIVLAFTFVGLGLALLAMKQWRFRVSYWV 298
>gi|319951241|ref|ZP_08025078.1| hypothetical protein ES5_16381 [Dietzia cinnamea P4]
gi|319435097|gb|EFV90380.1| hypothetical protein ES5_16381 [Dietzia cinnamea P4]
Length=295
Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 160/271 (60%), Positives = 200/271 (74%), Gaps = 2/271 (0%)
Query 12 TQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGLY 71
S T R DL G + ELWL LGWQDIKQRYRRS LGP WITIATG AVA+G LY
Sbjct 25 NDSHTFRRAVADLRQGLGQRELWLSLGWQDIKQRYRRSTLGPLWITIATGVMAVALGLLY 84
Query 72 SKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVWR 131
S LF++ L+E LP+VT+GLI+W I+ I +GAEVF+ANEGLIKQLP+ LSVHVYRLVWR
Sbjct 85 SILFQIPLAEFLPHVTVGLIMWGFISGCIKEGAEVFIANEGLIKQLPSALSVHVYRLVWR 144
Query 132 QMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRDIGP 191
Q +F HN+VI+ ++ ++FP+P W L + LA++ +N VWVS+ FGILATR+RDI P
Sbjct 145 QFLFLCHNLVIWVILMLVFPRPLGWELLLSVLGLAVLMVNGVWVSMLFGILATRFRDIAP 204
Query 192 LLFSVVQLLFFMTPIIWNDETLRRQGA--GRWSSIVELNPLLHYLDIVRAPLLGAHQELR 249
LL S+VQLLF+MTPI+W +TL QG + I E+NPL HYL+IVRAP+LG +
Sbjct 205 LLDSMVQLLFYMTPIVWTTQTLYEQGGQIADRARIAEINPLYHYLEIVRAPMLGQSVDAY 264
Query 250 HWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
HW VVL T VG +LA A+R++R+RVPYWV
Sbjct 265 HWWVVLACTAVGLLLAFVALRRFRSRVPYWV 295
>gi|259508131|ref|ZP_05751031.1| O-antigen export system, permease protein [Corynebacterium efficiens
YS-314]
gi|259164220|gb|EEW48774.1| O-antigen export system, permease protein [Corynebacterium efficiens
YS-314]
Length=300
Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 155/282 (55%), Positives = 205/282 (73%), Gaps = 2/282 (0%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
MT + ++ +QS T D+V GF++HELWL LGWQDIKQRYRRSVLGP WITIAT
Sbjct 19 MTVVQQDSAPPSQSMTFRAAWDDIVRGFKQHELWLQLGWQDIKQRYRRSVLGPLWITIAT 78
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
G AVA+G LYS LF++ L+E LP+VT+GLI+WN I+ I +GA++F+ NEGLIKQLP+
Sbjct 79 GVMAVALGLLYSVLFKIPLAEFLPHVTVGLIIWNFISGCIKEGADIFIDNEGLIKQLPSA 138
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVW+Q +F HN+VI+ ++ +IFP+P W L +P + L+ +N VWV++ FG
Sbjct 139 LSVHVYRLVWKQALFLGHNLVIWVILMLIFPRPLGWDVLLIIPGMFLLIVNGVWVAMFFG 198
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGA--GRWSSIVELNPLLHYLDIVR 238
I+ATRYRD+ PLL + QLLF++TPI+W TL+ G + + ELNPL HYL++VR
Sbjct 199 IIATRYRDVSPLLEAGTQLLFYVTPIVWMTSTLQNHSEEMGGRARLAELNPLYHYLEVVR 258
Query 239 APLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
AP++G+ HW +VL TV G LA AMRQ+R RV YWV
Sbjct 259 APMIGSDLPAYHWWIVLGFTVAGLGLALLAMRQWRFRVSYWV 300
>gi|25026734|ref|NP_736788.1| putative O-antigen export system permease protein [Corynebacterium
efficiens YS-314]
gi|23492013|dbj|BAC16988.1| putative O-antigen export system permease protein [Corynebacterium
efficiens YS-314]
Length=323
Score = 316 bits (809), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 155/282 (55%), Positives = 205/282 (73%), Gaps = 2/282 (0%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
MT + ++ +QS T D+V GF++HELWL LGWQDIKQRYRRSVLGP WITIAT
Sbjct 42 MTVVQQDSAPPSQSMTFRAAWDDIVRGFKQHELWLQLGWQDIKQRYRRSVLGPLWITIAT 101
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
G AVA+G LYS LF++ L+E LP+VT+GLI+WN I+ I +GA++F+ NEGLIKQLP+
Sbjct 102 GVMAVALGLLYSVLFKIPLAEFLPHVTVGLIIWNFISGCIKEGADIFIDNEGLIKQLPSA 161
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVW+Q +F HN+VI+ ++ +IFP+P W L +P + L+ +N VWV++ FG
Sbjct 162 LSVHVYRLVWKQALFLGHNLVIWVILMLIFPRPLGWDVLLIIPGMFLLIVNGVWVAMFFG 221
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGA--GRWSSIVELNPLLHYLDIVR 238
I+ATRYRD+ PLL + QLLF++TPI+W TL+ G + + ELNPL HYL++VR
Sbjct 222 IIATRYRDVSPLLEAGTQLLFYVTPIVWMTSTLQNHSEEMGGRARLAELNPLYHYLEVVR 281
Query 239 APLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
AP++G+ HW +VL TV G LA AMRQ+R RV YWV
Sbjct 282 APMIGSDLPAYHWWIVLGFTVAGLGLALLAMRQWRFRVSYWV 323
>gi|300780055|ref|ZP_07089911.1| ABC superfamily ATP binding cassette transporter, permease protein
[Corynebacterium genitalium ATCC 33030]
gi|300534165|gb|EFK55224.1| ABC superfamily ATP binding cassette transporter, permease protein
[Corynebacterium genitalium ATCC 33030]
Length=320
Score = 315 bits (807), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 157/282 (56%), Positives = 204/282 (73%), Gaps = 2/282 (0%)
Query 1 MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
MT + + ++S+T DL G+ ++ELWL LGWQDIKQRYRRSVLGP WITIAT
Sbjct 39 MTSSADETTPASKSKTFRAAAADLTRGWGQYELWLQLGWQDIKQRYRRSVLGPLWITIAT 98
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
G A+A+G LYS LF++ + + LP+VT+G IVW I+ I DGA VF+ NEGLIKQLP+
Sbjct 99 GVMALALGLLYSMLFQIPVRDFLPHVTVGFIVWGFISGCIRDGANVFIENEGLIKQLPSA 158
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVWRQ++FFAHN+VI+ + +IF W L F+PALAL+ LN VWV++ FG
Sbjct 159 LSVHVYRLVWRQLLFFAHNMVIWLALVLIFRLELGWDLLLFIPALALMILNGVWVTMLFG 218
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQ--GAGRWSSIVELNPLLHYLDIVR 238
I+ATR+RD+ PLL ++VQLLF++TPI+W +TL+ Q + + + ELNPL HYL+IVR
Sbjct 219 IIATRFRDVAPLLEALVQLLFYVTPIVWTTQTLKEQRGDVAQRAMLAELNPLYHYLEIVR 278
Query 239 APLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
APL+G HW +VL T VG + A MRQ+R RVPYWV
Sbjct 279 APLIGRDLAAYHWWIVLAFTAVGLLAALLVMRQWRFRVPYWV 320
>gi|225020134|ref|ZP_03709326.1| hypothetical protein CORMATOL_00130 [Corynebacterium matruchotii
ATCC 33806]
gi|224947099|gb|EEG28308.1| hypothetical protein CORMATOL_00130 [Corynebacterium matruchotii
ATCC 33806]
Length=310
Score = 314 bits (805), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 157/281 (56%), Positives = 205/281 (73%), Gaps = 5/281 (1%)
Query 2 TFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATG 61
T +D + S S+T A DLV GF +HELWL LGWQDIKQRYRRSVLGP WITIATG
Sbjct 33 TDLDPEPS---GSKTFAAAWHDLVRGFHQHELWLQLGWQDIKQRYRRSVLGPLWITIATG 89
Query 62 TTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPL 121
A A+G LYS LF++ +++ LP+VT+GLI+W I+ I +GA+VF+ NEGLIKQLP+ L
Sbjct 90 VMAAALGLLYSVLFKIPVAQFLPHVTVGLIMWTFISGCIKEGAQVFIDNEGLIKQLPSAL 149
Query 122 SVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGI 181
SVHVYRLVW+Q +F HN++I+ + +IFP+P W L +PAL L+ N VWVS+ FGI
Sbjct 150 SVHVYRLVWKQTLFLGHNLIIWVALMVIFPRPLGWDFLLAIPALMLLIANGVWVSMFFGI 209
Query 182 LATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGA--GRWSSIVELNPLLHYLDIVRA 239
+ATRYRD+ PLL + QLLF++TPI+W +TL+ QG + + +LNPL HY+++VRA
Sbjct 210 IATRYRDVAPLLEAGTQLLFYVTPIVWMTQTLKDQGGTISDRAKLAQLNPLYHYMEVVRA 269
Query 240 PLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
PL+GA + HW VVL TV G ++A AMRQ+R RV YWV
Sbjct 270 PLIGADLPVYHWWVVLGCTVAGLIIALLAMRQWRFRVSYWV 310
>gi|21322965|dbj|BAB97594.1| ABC-type transporter, permease components [Corynebacterium glutamicum
ATCC 13032]
Length=268
Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 153/267 (58%), Positives = 200/267 (75%), Gaps = 2/267 (0%)
Query 16 TLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGLYSKLF 75
T D+V GF++HELWL LGWQDIKQRYRRSVLGP WITIATG A+A+G LYS LF
Sbjct 2 TFGAAWNDIVRGFKQHELWLQLGWQDIKQRYRRSVLGPLWITIATGVMALALGLLYSVLF 61
Query 76 RLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVWRQMIF 135
++ ++E LP+VT+GLI+WN I+ I +G+++F+ NEGLIKQLP+ LSVHVYRLVW+Q +F
Sbjct 62 KIPIAEFLPHVTVGLIIWNFISGCIKEGSDIFIDNEGLIKQLPSALSVHVYRLVWKQALF 121
Query 136 FAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRDIGPLLFS 195
AHN+VI+ ++ +IFP+P W L +PA+ L+ +N VWV + FGI+ATRYRD+ PLL +
Sbjct 122 LAHNLVIWVILMMIFPRPLGWDVLLIIPAMFLLVINGVWVVMFFGIIATRYRDVSPLLEA 181
Query 196 VVQLLFFMTPIIWNDETLRRQGA--GRWSSIVELNPLLHYLDIVRAPLLGAHQELRHWLV 253
QLLF++TPI+W TL+ Q A G + + ELNPL HYL+IVRAP++GA HW +
Sbjct 182 GTQLLFYVTPIVWMTSTLQSQSAEIGNRARLAELNPLYHYLEIVRAPMVGADLPAYHWWI 241
Query 254 VLVLTVVGWMLAAFAMRQYRARVPYWV 280
VL T VG LA AM+Q+R RV YWV
Sbjct 242 VLAFTFVGLGLALLAMKQWRFRVSYWV 268
>gi|305679868|ref|ZP_07402678.1| ABC-2 type transporter [Corynebacterium matruchotii ATCC 14266]
gi|305660488|gb|EFM49985.1| ABC-2 type transporter [Corynebacterium matruchotii ATCC 14266]
Length=310
Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 157/281 (56%), Positives = 204/281 (73%), Gaps = 5/281 (1%)
Query 2 TFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATG 61
T +D + S S+T A DLV GF +HELWL LGWQDIKQRYRRSVLGP WITIATG
Sbjct 33 TDLDPEPS---GSKTFAAAWHDLVRGFHQHELWLQLGWQDIKQRYRRSVLGPLWITIATG 89
Query 62 TTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPL 121
A A+G LYS LF++ +++ LP+VT+GLI+W I+ I +GA+VF+ NEGLIKQLP+ L
Sbjct 90 VMAAALGLLYSVLFKIPVAQFLPHVTVGLIMWTFISGCIKEGAQVFIDNEGLIKQLPSAL 149
Query 122 SVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGI 181
SVHVYRLVW+Q +F HN++I+ + +IFP+P W L +PAL L+ N VWVS+ FGI
Sbjct 150 SVHVYRLVWKQTLFLGHNLIIWVALMVIFPRPLGWDFLLAIPALMLLVANGVWVSMFFGI 209
Query 182 LATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAG--RWSSIVELNPLLHYLDIVRA 239
+ATRYRD+ PLL + QLLF++TPI+W +TL+ QG + + +LNPL HY+++VRA
Sbjct 210 IATRYRDVAPLLEAGTQLLFYVTPIVWMTQTLKDQGGAISDRAKLAQLNPLYHYMEVVRA 269
Query 240 PLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
PL+GA + HW VVL TV G +A AMRQ+R RV YWV
Sbjct 270 PLIGADLPVYHWWVVLGCTVAGLTIALLAMRQWRFRVSYWV 310
>gi|256374291|ref|YP_003097951.1| ABC transporter [Actinosynnema mirum DSM 43827]
gi|255918594|gb|ACU34105.1| ABC-2 type transporter [Actinosynnema mirum DSM 43827]
Length=303
Score = 312 bits (800), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 161/298 (55%), Positives = 205/298 (69%), Gaps = 19/298 (6%)
Query 2 TFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATG 61
T D QA SRT AR D+ D +R LW HLGWQDIKQRYRRSV+GP WITI+ G
Sbjct 6 TVADPQAPLAPDSRTFARAFADVRDAWRNRALWGHLGWQDIKQRYRRSVIGPLWITISMG 65
Query 62 TTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPL 121
TTAVAMG LYS+LF ++S LPY+T G ++WN + I +G +VF+ANEGLIK LPAP+
Sbjct 66 TTAVAMGLLYSQLFGQDISTFLPYMTAGFLIWNFMVGCITEGTDVFIANEGLIKHLPAPI 125
Query 122 SVHVYRLVWRQMIFFAHNIVIYFVIAIIF----PKPW------------SWADLSFLPAL 165
+VHV RLVWRQM+FF HN+V+Y ++A IF +P+ SW L +P
Sbjct 126 TVHVLRLVWRQMLFFVHNLVVYVIVAGIFFGTLSEPYHMQGDPNLHPGISWTILLAIPGF 185
Query 166 ALIFLNCVWVSLCFGILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRR--QGAGRWSS 223
L+ +N VWV+L FGI++TR+RDI P++ S + L+FFMTPI+W+ L + +G+G W
Sbjct 186 FLLAVNAVWVALLFGIISTRFRDIPPVIHSFINLVFFMTPIVWHTGILSKLGEGSGDWRV 245
Query 224 -IVELNPLLHYLDIVRAPLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
I ELNPL H+L+IVRAPLLG Q+ HW+VV TVVGW LA A+R YRARV YWV
Sbjct 246 LIAELNPLYHFLEIVRAPLLGHAQDWHHWVVVGAFTVVGWALALVALRNYRARVSYWV 303
>gi|227506057|ref|ZP_03936106.1| ABC superfamily ATP binding cassette transporter, permease protein
[Corynebacterium striatum ATCC 6940]
gi|227197339|gb|EEI77387.1| ABC superfamily ATP binding cassette transporter, permease protein
[Corynebacterium striatum ATCC 6940]
Length=296
Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 155/271 (58%), Positives = 202/271 (75%), Gaps = 2/271 (0%)
Query 12 TQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGLY 71
+QS TL DL+ G ++ ELW LG QDIKQRYRRSVLGPFWITIATG A A+G LY
Sbjct 26 SQSMTLRTAFADLIQGAKQRELWFMLGIQDIKQRYRRSVLGPFWITIATGVMAAALGLLY 85
Query 72 SKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVWR 131
S LF++ ++E LP+VT+GLI+WN I+ AI +G+ VF+ NEGLIKQLPAPLSVHVYRLVWR
Sbjct 86 SMLFQIPVAEFLPHVTVGLIMWNFISGAIKEGSTVFIDNEGLIKQLPAPLSVHVYRLVWR 145
Query 132 QMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRDIGP 191
Q +F HN++I+ ++ IIFP+ W F+PALAL+ +N VWV++ FGI+ATR+RD+ P
Sbjct 146 QTLFLGHNLIIWLLLIIIFPRHLGWEFFLFIPALALLLVNGVWVAMFFGIVATRFRDVAP 205
Query 192 LLFSVVQLLFFMTPIIWNDETLRRQGAGRWS--SIVELNPLLHYLDIVRAPLLGAHQELR 249
LL ++ QLLF++TPI+W TL+ QG S I E+NPL HY++IVRAP++G
Sbjct 206 LLEALTQLLFYVTPIVWMTNTLKDQGGAVASRARIAEINPLYHYMEIVRAPMIGEPVAGY 265
Query 250 HWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
HWL+V+ T+VG +A AMRQ+R RV YWV
Sbjct 266 HWLIVIACTLVGIFVAGLAMRQWRFRVSYWV 296
>gi|317507751|ref|ZP_07965455.1| ABC-2 type transporter [Segniliparus rugosus ATCC BAA-974]
gi|316253950|gb|EFV13316.1| ABC-2 type transporter [Segniliparus rugosus ATCC BAA-974]
Length=286
Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 160/282 (57%), Positives = 212/282 (76%), Gaps = 3/282 (1%)
Query 2 TFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATG 61
T + + S + SR+LAR GDL GF +ELWL LGWQDIKQRYRRSVLGPFWITI+TG
Sbjct 5 TTVQGRVSARASSRSLARAWGDLRRGFFDYELWLQLGWQDIKQRYRRSVLGPFWITISTG 64
Query 62 TTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPL 121
T A+ + LYS L +EL LP+VT+GLI+WNLI ++ +G+EVF+ANEG+IKQLPAP+
Sbjct 65 TIAICLALLYSLLLGVELRSLLPHVTVGLIIWNLIQNSLEEGSEVFIANEGIIKQLPAPI 124
Query 122 SVHVYRLVWRQMIFFAHNIVIYFVIAIIF-PKPWSWADLSFLPALALIFLNCVWVSLCFG 180
SVHVYRL+WRQ + AHN+VIY ++ I+F PK WSW+ L +PALAL+ +N VWV++ G
Sbjct 125 SVHVYRLIWRQALLMAHNLVIYVILMIVFPPKQWSWSMLLAVPALALLLVNAVWVAMVAG 184
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGA--GRWSSIVELNPLLHYLDIVR 238
I+ATR+RD+ P++ +V QLLF++TPI+W + L +QG + + +VE+NPL HY+DI+R
Sbjct 185 IIATRFRDVVPMVANVTQLLFYLTPIVWTTDGLVKQGGSVAKRARLVEINPLYHYVDILR 244
Query 239 APLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
AP+LG Q+ HW +VL LT G L MRQYR+RV YWV
Sbjct 245 APMLGTPQQAYHWWIVLALTAFGIGLMLLVMRQYRSRVAYWV 286
>gi|227831944|ref|YP_002833651.1| putative ABC transport system, permease protein [Corynebacterium
aurimucosum ATCC 700975]
gi|262183197|ref|ZP_06042618.1| putative ABC transport system, permease protein [Corynebacterium
aurimucosum ATCC 700975]
gi|227452960|gb|ACP31713.1| putative ABC transport system, permease protein [Corynebacterium
aurimucosum ATCC 700975]
Length=303
Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/271 (56%), Positives = 201/271 (75%), Gaps = 2/271 (0%)
Query 12 TQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGLY 71
++S T++ DL+ G R+ ELW LG QDIKQRYRRSVLGPFWITIATG A A+G LY
Sbjct 33 SRSMTMSAAFADLLQGARQRELWFKLGIQDIKQRYRRSVLGPFWITIATGVMAAALGLLY 92
Query 72 SKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVWR 131
S LF++ ++E LP+VT+GLI+WN I+ AI +G+ VF+ NEGLIKQLPAPLSVH+YRLVWR
Sbjct 93 SMLFQIPVAEFLPHVTVGLIMWNFISGAIKEGSTVFIDNEGLIKQLPAPLSVHIYRLVWR 152
Query 132 QMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRDIGP 191
Q +F HN++I+ ++ +IFP+ W F+PAL L +N VWV++ FGI+ATR+RD+ P
Sbjct 153 QTLFLGHNLIIWLLLILIFPRHLGWEFFLFIPALGLFLVNGVWVAMFFGIIATRFRDVAP 212
Query 192 LLFSVVQLLFFMTPIIWNDETLRRQGAGRWS--SIVELNPLLHYLDIVRAPLLGAHQELR 249
LL ++ QLLF++TPI+W TL+ QG S I E+NPL HY++I+RAP++G
Sbjct 213 LLEALTQLLFYVTPIVWMTNTLKDQGGAVASRARIAEINPLYHYMEIIRAPMIGEPVAGY 272
Query 250 HWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
HWL+V+ TV G ++A AMRQ+R RV YWV
Sbjct 273 HWLIVIGCTVAGLLIAGLAMRQWRFRVSYWV 303
>gi|227549574|ref|ZP_03979623.1| ABC superfamily ATP binding cassette transporter, permease protein
[Corynebacterium lipophiloflavum DSM 44291]
gi|227078338|gb|EEI16301.1| ABC superfamily ATP binding cassette transporter, permease protein
[Corynebacterium lipophiloflavum DSM 44291]
Length=315
Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 161/282 (58%), Positives = 211/282 (75%), Gaps = 5/282 (1%)
Query 4 MDAQASFQ---TQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT 60
M AS + ++S TL+ DLV G+R++ELWL LGWQDIKQRYRRS LGP WITIAT
Sbjct 34 MTTNASVEPPASKSTTLSMAFRDLVRGWRQNELWLQLGWQDIKQRYRRSTLGPLWITIAT 93
Query 61 GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP 120
G A+A+G LYS LF++ + E LP+VT+G I+W I I DG+++F+ NEGLIKQLP+
Sbjct 94 GVMALALGLLYSMLFQISVREFLPHVTVGFIIWGFIAGCIKDGSDIFIENEGLIKQLPSA 153
Query 121 LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG 180
LSVHVYRLVWRQ++F AHN+VI+ ++ ++F P SW L +PALAL+ +N VWV++ FG
Sbjct 154 LSVHVYRLVWRQLLFLAHNMVIWVLLVVVFRIPLSWNTLLAIPALALLVINGVWVTMLFG 213
Query 181 ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGA--GRWSSIVELNPLLHYLDIVR 238
I+ATR+RD+ PLL S+VQLLF++TPI+W +TL+ QG + + I ELNPL HYL+IVR
Sbjct 214 IIATRFRDVAPLLESMVQLLFYVTPIVWTTQTLKDQGGEVAQRARIAELNPLYHYLEIVR 273
Query 239 APLLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
APL+G +L HW +V TVVG +LA MRQ+R RVPYWV
Sbjct 274 APLIGKETDLYHWGIVGACTVVGLLLALLVMRQWRFRVPYWV 315
>gi|296120142|ref|ZP_06838695.1| O-antigen export system, permease protein [Corynebacterium ammoniagenes
DSM 20306]
gi|295966834|gb|EFG80106.1| O-antigen export system, permease protein [Corynebacterium ammoniagenes
DSM 20306]
Length=297
Score = 301 bits (771), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 149/278 (54%), Positives = 203/278 (74%), Gaps = 2/278 (0%)
Query 5 DAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTA 64
+ Q + S+T DL+ G ++HELWL LG QDIKQRYRRS+LGPFWITIATG A
Sbjct 20 EGQTVPPSNSKTFGAAFKDLLQGAKQHELWLMLGLQDIKQRYRRSILGPFWITIATGVMA 79
Query 65 VAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVH 124
+A+G LYS LF+L L++ LP+VT+GLI+WN I+ AI +G+ +F+ NEGLIKQLPAPLSVH
Sbjct 80 LALGLLYSMLFQLPLADFLPHVTVGLIMWNFISGAIREGSTIFIDNEGLIKQLPAPLSVH 139
Query 125 VYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGILAT 184
VYRLVWRQ +F HN++I+ ++ +IFP+ W +P + L+ +N VWV++ FG++AT
Sbjct 140 VYRLVWRQTLFLGHNLIIWLLLIVIFPRSLGWEFFLVIPGMLLLVVNGVWVAMFFGMVAT 199
Query 185 RYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGA--GRWSSIVELNPLLHYLDIVRAPLL 242
R+RD+ PLL ++ QLLF++TPI+W +TL QG + + E+NPL HYL+IVR+PL+
Sbjct 200 RFRDVAPLLEALTQLLFYVTPIVWTTKTLTDQGGAVADRARLAEINPLYHYLEIVRSPLI 259
Query 243 GAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
G E HW +VL T VG ++A AMRQ+R RV YWV
Sbjct 260 GEPIEAYHWWIVLAFTAVGLLVAMLAMRQWRFRVSYWV 297
>gi|213965748|ref|ZP_03393941.1| O-antigen export system, permease protein [Corynebacterium amycolatum
SK46]
gi|213951699|gb|EEB63088.1| O-antigen export system, permease protein [Corynebacterium amycolatum
SK46]
Length=322
Score = 301 bits (770), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 153/274 (56%), Positives = 202/274 (74%), Gaps = 2/274 (0%)
Query 9 SFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMG 68
+F+++SRT+ DLV GF + ELWL LGWQDIKQRYRRS LGP WITIATG A+A+G
Sbjct 49 AFKSRSRTMGAAWQDLVTGFGQRELWLQLGWQDIKQRYRRSTLGPLWITIATGAMALALG 108
Query 69 GLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRL 128
LYS LF+ EL+ LP+VT+GLI+W I+ + +GA VF+ NEGLIKQLP+ LSVHVYRL
Sbjct 109 LLYSLLFQQELAFFLPHVTVGLIIWGFISGCVREGATVFIENEGLIKQLPSALSVHVYRL 168
Query 129 VWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRD 188
VWRQ++F AHN+VI+ ++ ++F W +PA+AL+ +N VWV++ FGI+ATRYRD
Sbjct 169 VWRQLLFLAHNMVIWLILVLVFRPDLGWNFFLVIPAMALLVVNGVWVTMFFGIIATRYRD 228
Query 189 IGPLLFSVVQLLFFMTPIIWNDETLRRQGA--GRWSSIVELNPLLHYLDIVRAPLLGAHQ 246
+ PLL S++QL+F+MTPI+W +TL QG + I E+NPL HYL+I+RAPL G
Sbjct 229 VAPLLDSLIQLVFYMTPIVWTTKTLEEQGGAVAERARIAEINPLFHYLEIIRAPLTGEPV 288
Query 247 ELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
+ HW +VL T VG +LA AMR +R+RV YWV
Sbjct 289 DTYHWWIVLACTAVGLLLALGAMRLWRSRVSYWV 322
>gi|237786583|ref|YP_002907288.1| ABC transporter permease [Corynebacterium kroppenstedtii DSM
44385]
gi|237759495|gb|ACR18745.1| ABC-type transport system, permease protein [Corynebacterium
kroppenstedtii DSM 44385]
Length=319
Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 158/271 (59%), Positives = 202/271 (75%), Gaps = 2/271 (0%)
Query 12 TQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGLY 71
+QS+TL DLV GF+ +ELWL LG QDIKQRYRRSVLGP WITIATG A+A+G LY
Sbjct 49 SQSQTLRAAWMDLVRGFQSYELWLSLGMQDIKQRYRRSVLGPLWITIATGVMALALGLLY 108
Query 72 SKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVWR 131
S LF + L + LP+VT+GLI+W I+ +++GA+ F+ANEGLIKQLPA LSVHVYRLVWR
Sbjct 109 SLLFNIPLHDFLPHVTVGLIIWGFISGCVIEGAQTFIANEGLIKQLPASLSVHVYRLVWR 168
Query 132 QMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRDIGP 191
Q +F HN+VIY ++ IIFP+P W +PALALI +N VWV + FGI++TR+RDI P
Sbjct 169 QFLFLLHNLVIYVLLMIIFPRPLGWDWFLSIPALALIVINGVWVGMFFGIISTRFRDIAP 228
Query 192 LLFSVVQLLFFMTPIIWNDETLRRQG--AGRWSSIVELNPLLHYLDIVRAPLLGAHQELR 249
LL S++QL F++TPI+W +TLR +G AG + I ELNPL+HYL+IVR PL G
Sbjct 229 LLESLIQLAFYVTPIVWTMQTLRDRGGAAGERARIAELNPLMHYLEIVRGPLTGVPVMWY 288
Query 250 HWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
W++V + TVVG ++ AMRQ+R RV YWV
Sbjct 289 SWVIVGLCTVVGLLITTIAMRQWRGRVSYWV 319
>gi|172041625|ref|YP_001801339.1| putative ABC transport system, permease protein [Corynebacterium
urealyticum DSM 7109]
gi|171852929|emb|CAQ05905.1| putative ABC transport system, permease protein [Corynebacterium
urealyticum DSM 7109]
Length=288
Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/271 (56%), Positives = 196/271 (73%), Gaps = 2/271 (0%)
Query 12 TQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGLY 71
++S+T A DL GF++ ELWL LGWQDIKQRYRRSVLGP WITIATG A A+G LY
Sbjct 18 SRSQTFAAAWDDLTRGFQQRELWLALGWQDIKQRYRRSVLGPLWITIATGVMAAALGLLY 77
Query 72 SKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVWR 131
S+LF ++++ LP+V +GLI+W I I +GAEVF++NEGLIKQLP+ LSVHVYRLVWR
Sbjct 78 SQLFGIDVAVFLPHVAVGLIMWGFIAGCIKEGAEVFISNEGLIKQLPSALSVHVYRLVWR 137
Query 132 QMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRDIGP 191
Q +F HN+VI+ + IF P W L +P LAL+ +N VWV++ FGI+ATR+RD+ P
Sbjct 138 QFLFLLHNLVIWLALLAIFRIPVGWEVLLAVPGLALLIINGVWVTMFFGIVATRFRDVAP 197
Query 192 LLFSVVQLLFFMTPIIWNDETLRRQGA--GRWSSIVELNPLLHYLDIVRAPLLGAHQELR 249
LL S+VQL F+MTPI+W +TL QG +++ +LNPL HYL+IVR P++ E
Sbjct 198 LLDSLVQLAFYMTPIVWTAQTLTDQGGAVAERAALAKLNPLYHYLEIVRGPMINVPVEAS 257
Query 250 HWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
W +V+ +TVVG LA AMR++R RV YWV
Sbjct 258 SWYIVIAMTVVGLGLALLAMRKWRFRVSYWV 288
>gi|227487364|ref|ZP_03917680.1| ABC superfamily ATP binding cassette transporter, permease protein
[Corynebacterium glucuronolyticum ATCC 51867]
gi|227541116|ref|ZP_03971165.1| ABC superfamily ATP binding cassette transporter, permease protein
[Corynebacterium glucuronolyticum ATCC 51866]
gi|227092588|gb|EEI27900.1| ABC superfamily ATP binding cassette transporter, permease protein
[Corynebacterium glucuronolyticum ATCC 51867]
gi|227183076|gb|EEI64048.1| ABC superfamily ATP binding cassette transporter, permease protein
[Corynebacterium glucuronolyticum ATCC 51866]
Length=294
Score = 298 bits (763), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 154/272 (57%), Positives = 205/272 (76%), Gaps = 4/272 (1%)
Query 12 TQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGLY 71
++SRTL+ DLV G +++ELWL LGWQDIKQRYRRSVLGP WITIATG A+A+G LY
Sbjct 24 SKSRTLSAAWADLVRGLKQYELWLQLGWQDIKQRYRRSVLGPLWITIATGVMALALGLLY 83
Query 72 SKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVWR 131
S LF++ L LP+VT+GLI+WN I+ I +G+++F+ NEGLIKQLP+ LSVHVYRLVW+
Sbjct 84 SLLFKIPLETFLPHVTVGLIMWNFISGCIKEGSDIFIDNEGLIKQLPSALSVHVYRLVWK 143
Query 132 QMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFGILATRYRDIGP 191
Q++F HN+VI+ ++ +IFP+P W L PALAL+ +N WV++ FGI+ATRYRD P
Sbjct 144 QLLFLGHNLVIWAILMLIFPRPLGWDILLIFPALALLIVNGAWVAMFFGIVATRYRDFSP 203
Query 192 LLFSVVQLLFFMTPIIWNDETLRRQG---AGRWSSIVELNPLLHYLDIVRAPLLGAHQEL 248
LL ++ QLLF++TPI+W +TL QG AGR + + LNPL HY+++VRAPL+GA
Sbjct 204 LLEALTQLLFYVTPIVWMTDTLTEQGPEVAGR-AKLALLNPLYHYMEVVRAPLIGAPIHA 262
Query 249 RHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV 280
+W VVL TV+G LA AM+++R RV YWV
Sbjct 263 YNWWVVLACTVIGVGLALMAMKKWRFRVSYWV 294
Lambda K H
0.332 0.143 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 442782057568
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40