BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3788
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610924|ref|NP_218305.1| nucleoside diphosphate kinase regul... 320 6e-86
gi|294995299|ref|ZP_06800990.1| nucleoside diphosphate kinase re... 318 1e-85
gi|298527263|ref|ZP_07014672.1| nucleoside diphosphate kinase re... 317 5e-85
gi|240168559|ref|ZP_04747218.1| nucleoside diphosphate kinase re... 271 2e-71
gi|183985318|ref|YP_001853609.1| hypothetical protein MMAR_5350 ... 258 2e-67
gi|118619988|ref|YP_908320.1| nucleoside diphosphate kinase regu... 255 2e-66
gi|296166914|ref|ZP_06849331.1| nucleoside diphosphate kinase re... 238 3e-61
gi|254822488|ref|ZP_05227489.1| nucleoside diphosphate kinase re... 230 5e-59
gi|342860042|ref|ZP_08716694.1| nucleoside diphosphate kinase re... 229 8e-59
gi|41406335|ref|NP_959171.1| nucleoside diphosphate kinase regul... 225 2e-57
gi|118466969|ref|YP_879527.1| nucleoside diphosphate kinase regu... 224 4e-57
gi|254773292|ref|ZP_05214808.1| nucleoside diphosphate kinase re... 221 2e-56
gi|134100846|ref|YP_001106507.1| nucleoside diphosphate kinase r... 111 3e-23
gi|257054902|ref|YP_003132734.1| nucleoside diphosphate kinase r... 95.1 3e-18
gi|289759954|ref|ZP_06519332.1| conserved hypothetical protein [... 82.8 2e-14
gi|300790568|ref|YP_003770859.1| transcription elongation factor... 82.0 3e-14
gi|328886579|emb|CCA59818.1| transcription elongation factor, pu... 79.3 2e-13
gi|302530802|ref|ZP_07283144.1| predicted protein [Streptomyces ... 76.6 1e-12
gi|291455579|ref|ZP_06594969.1| nucleoside diphosphate kinase re... 73.9 7e-12
gi|291300234|ref|YP_003511512.1| GreA/GreB family elongation fac... 67.4 7e-10
gi|331697299|ref|YP_004333538.1| transcription elongation factor... 60.8 6e-08
gi|191637035|ref|YP_001986201.1| transcription elongation factor... 57.0 1e-06
gi|116493793|ref|YP_805527.1| transcription elongation factor Gr... 57.0 1e-06
gi|259502254|ref|ZP_05745156.1| transcription elongation factor ... 56.6 1e-06
gi|227529977|ref|ZP_03960026.1| transcription elongation factor ... 56.2 2e-06
gi|334881916|emb|CCB82852.1| transcription elongation factor Gre... 54.7 4e-06
gi|339637873|emb|CCC16870.1| transcription elongation factor Gre... 54.7 4e-06
gi|311031568|ref|ZP_07709658.1| transcription elongation factor ... 53.5 9e-06
gi|138896117|ref|YP_001126570.1| transcription elongation factor... 53.1 1e-05
gi|336391768|ref|ZP_08573167.1| transcription elongation factor ... 53.1 1e-05
gi|345023308|ref|ZP_08786921.1| transcriptional elongation facto... 53.1 1e-05
gi|326331165|ref|ZP_08197461.1| transcription elongation factor ... 52.8 2e-05
gi|108805000|ref|YP_644937.1| transcription elongation factor Gr... 52.8 2e-05
gi|162451849|ref|YP_001614216.1| hypothetical protein sce3576 [S... 52.4 2e-05
gi|227514075|ref|ZP_03944124.1| transcription elongation factor ... 51.6 4e-05
gi|184156278|ref|YP_001844618.1| transcription elongation factor... 51.6 4e-05
gi|329666577|gb|AEB92525.1| transcription elongation factor GreA... 51.6 4e-05
gi|328480203|gb|EGF49134.1| transcription elongation factor GreA... 51.2 5e-05
gi|227888966|ref|ZP_04006771.1| transcription elongation factor ... 51.2 5e-05
gi|28377155|ref|NP_784047.1| transcription elongation factor Gre... 51.2 6e-05
gi|335357235|ref|ZP_08549105.1| transcription elongation factor ... 50.8 7e-05
gi|184154324|ref|YP_001842665.1| transcription elongation factor... 50.4 8e-05
gi|227364132|ref|ZP_03848230.1| transcription elongation factor ... 50.4 8e-05
gi|148544990|ref|YP_001272360.1| transcription elongation factor... 50.4 8e-05
gi|199597924|ref|ZP_03211349.1| transcription elongation factor ... 50.4 9e-05
gi|254555375|ref|YP_003061792.1| transcription elongation factor... 50.4 9e-05
gi|300766895|ref|ZP_07076808.1| transcription elongation factor ... 50.4 1e-04
gi|333396131|ref|ZP_08477948.1| transcription elongation factor ... 50.1 1e-04
gi|194467226|ref|ZP_03073213.1| transcription elongation factor ... 50.1 1e-04
gi|83589023|ref|YP_429032.1| GreA/GreB family elongation factor ... 50.1 1e-04
>gi|15610924|ref|NP_218305.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
H37Rv]
gi|15843410|ref|NP_338447.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
CDC1551]
gi|31794961|ref|NP_857454.1| nucleoside diphosphate kinase regulator [Mycobacterium bovis
AF2122/97]
74 more sequence titles
Length=161
Score = 320 bits (819), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 160/161 (99%), Positives = 161/161 (100%), Gaps = 0/161 (0%)
Query 1 VSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60
+SEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA
Sbjct 1 MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60
Query 61 ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120
ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE
Sbjct 61 ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120
Query 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161
TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS
Sbjct 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161
>gi|294995299|ref|ZP_06800990.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
210]
gi|326905627|gb|EGE52560.1| hypothetical protein TBPG_03585 [Mycobacterium tuberculosis W-148]
gi|339296595|gb|AEJ48706.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
CCDC5079]
Length=161
Score = 318 bits (816), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 159/161 (99%), Positives = 161/161 (100%), Gaps = 0/161 (0%)
Query 1 VSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60
+SEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA
Sbjct 1 MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60
Query 61 ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120
+LGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE
Sbjct 61 LLGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120
Query 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161
TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS
Sbjct 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161
>gi|298527263|ref|ZP_07014672.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
94_M4241A]
gi|298497057|gb|EFI32351.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
94_M4241A]
Length=161
Score = 317 bits (811), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 159/161 (99%), Positives = 160/161 (99%), Gaps = 0/161 (0%)
Query 1 VSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60
+SEKVESK LADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA
Sbjct 1 MSEKVESKELADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60
Query 61 ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120
ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE
Sbjct 61 ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120
Query 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161
TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS
Sbjct 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161
>gi|240168559|ref|ZP_04747218.1| nucleoside diphosphate kinase regulator [Mycobacterium kansasii
ATCC 12478]
Length=161
Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 132/161 (82%), Positives = 151/161 (94%), Gaps = 0/161 (0%)
Query 1 VSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60
+SE+V+S GLA+AARDHLAAELARLRQR DRLE+EVKNDRGM+GDHGDAAEAIQRADELA
Sbjct 1 MSEEVQSTGLAEAARDHLAAELARLRQRHDRLEIEVKNDRGMVGDHGDAAEAIQRADELA 60
Query 61 ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120
+L DRINELDRRL++GP +GS+TLPGGTEVTLRFPDGEVVTMHVIS++EE+P G EAE
Sbjct 61 VLADRINELDRRLKSGPLRDAGSDTLPGGTEVTLRFPDGEVVTMHVISIIEESPEGHEAE 120
Query 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161
TLTA SPLGQALAG QPGDTVTYSTP+GP+QV+L+A+KLPS
Sbjct 121 TLTANSPLGQALAGRQPGDTVTYSTPRGPSQVELIAMKLPS 161
>gi|183985318|ref|YP_001853609.1| hypothetical protein MMAR_5350 [Mycobacterium marinum M]
gi|183178644|gb|ACC43754.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=161
Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 127/161 (79%), Positives = 147/161 (92%), Gaps = 0/161 (0%)
Query 1 VSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60
+SE+V+S GLA+AARD+LAAELARLRQR DRLE+EVKNDRGMIGDHGDAAEAIQRADELA
Sbjct 1 MSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60
Query 61 ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120
+L +RI+ELDRRL+ GP+ +GSETLP GTEVTLRF DGEVVTMHVI++VEE PVG E E
Sbjct 61 VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE 120
Query 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161
TLTA SPLGQALAG Q GDTVTYSTP+GP+QV+LL++KLP+
Sbjct 121 TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161
>gi|118619988|ref|YP_908320.1| nucleoside diphosphate kinase regulator [Mycobacterium ulcerans
Agy99]
gi|118572098|gb|ABL06849.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=161
Score = 255 bits (651), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/161 (79%), Positives = 146/161 (91%), Gaps = 0/161 (0%)
Query 1 VSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60
+SE+V+S GLA+AARD+LAAELARLRQR DRLE+EVKNDRGMIGDHGDAAEAIQRADEL
Sbjct 1 MSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELP 60
Query 61 ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120
+L +RI+ELDRRL+ GP+ +GSETLP GTEVTLRF DGEVVTMHVI++VEE PVG E E
Sbjct 61 VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE 120
Query 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161
TLTA SPLGQALAG Q GDTVTYSTP+GP+QV+LL++KLP+
Sbjct 121 TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161
>gi|296166914|ref|ZP_06849331.1| nucleoside diphosphate kinase regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897791|gb|EFG77380.1| nucleoside diphosphate kinase regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=159
Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/140 (85%), Positives = 127/140 (91%), Gaps = 0/140 (0%)
Query 21 ELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRTGPTPW 80
EL RLRQRRDRLEVEV+NDRGM+GDHGDAAEAIQRA+EL L DRINELDRRLRTGP+
Sbjct 19 ELERLRQRRDRLEVEVRNDRGMVGDHGDAAEAIQRAEELVGLSDRINELDRRLRTGPSQP 78
Query 81 SGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPLGQALAGHQPGDT 140
SETLPGGTEVTLRF DGEVVTMHVIS+VEETPVGRE ETLTARSPL QALAGH+ GDT
Sbjct 79 DASETLPGGTEVTLRFSDGEVVTMHVISIVEETPVGREGETLTARSPLAQALAGHKAGDT 138
Query 141 VTYSTPQGPNQVQLLAVKLP 160
VTYSTPQG +QV+L+AVKLP
Sbjct 139 VTYSTPQGEDQVELIAVKLP 158
>gi|254822488|ref|ZP_05227489.1| nucleoside diphosphate kinase regulator [Mycobacterium intracellulare
ATCC 13950]
Length=159
Score = 230 bits (587), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 126/150 (84%), Positives = 134/150 (90%), Gaps = 0/150 (0%)
Query 11 ADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELD 70
ADAAR++L AEL RLRQRRDRLE EVKNDRGM+GDHGDAAEAIQRADEL +L DRINELD
Sbjct 9 ADAARNNLEAELDRLRQRRDRLEAEVKNDRGMVGDHGDAAEAIQRADELVVLSDRINELD 68
Query 71 RRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPLGQ 130
RRLR GP S TLPGGTEVTLRF DGEVVTMHVIS+VEETPVGREAETLTARSPL Q
Sbjct 69 RRLRAGPPDSDSSATLPGGTEVTLRFADGEVVTMHVISIVEETPVGREAETLTARSPLAQ 128
Query 131 ALAGHQPGDTVTYSTPQGPNQVQLLAVKLP 160
ALAG +PGDTVTYSTPQG NQV+L+AVKLP
Sbjct 129 ALAGRKPGDTVTYSTPQGENQVELIAVKLP 158
>gi|342860042|ref|ZP_08716694.1| nucleoside diphosphate kinase regulator [Mycobacterium colombiense
CECT 3035]
gi|342132420|gb|EGT85649.1| nucleoside diphosphate kinase regulator [Mycobacterium colombiense
CECT 3035]
Length=159
Score = 229 bits (585), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 127/160 (80%), Positives = 143/160 (90%), Gaps = 2/160 (1%)
Query 1 VSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60
+S+KV S ADAAR++L AEL RLRQRR+RLE EVKNDRGM+GDHGDAAEAIQRA+EL
Sbjct 1 MSKKVPSA--ADAARNNLEAELDRLRQRRERLEAEVKNDRGMVGDHGDAAEAIQRAEELV 58
Query 61 ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120
+L DRI+ELDRRLRTGP+ +ETLPGGTEVTLRF DGEVVTMHVIS+VEETPVGREAE
Sbjct 59 VLTDRISELDRRLRTGPSDADAAETLPGGTEVTLRFADGEVVTMHVISIVEETPVGREAE 118
Query 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLP 160
TLTARSPL QALAG +PGDTVTYSTPQG NQV+L++VKLP
Sbjct 119 TLTARSPLAQALAGRKPGDTVTYSTPQGENQVELISVKLP 158
>gi|41406335|ref|NP_959171.1| nucleoside diphosphate kinase regulator [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|41394683|gb|AAS02554.1| hypothetical protein MAP_0237c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336461588|gb|EGO40454.1| transcription elongation factor [Mycobacterium avium subsp. paratuberculosis
S397]
Length=158
Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/150 (84%), Positives = 131/150 (88%), Gaps = 0/150 (0%)
Query 11 ADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELD 70
ADAAR +L AEL RLRQRRDRLEVEVKNDRGM+GDHGDAAEAIQRADEL +L DRINELD
Sbjct 9 ADAARKNLEAELDRLRQRRDRLEVEVKNDRGMVGDHGDAAEAIQRADELVVLSDRINELD 68
Query 71 RRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPLGQ 130
RRLR GP S TLPGGTEVTLRF DGEVVTMHVIS+VEETPVGRE ETLTARSPL Q
Sbjct 69 RRLRAGPPDSDASATLPGGTEVTLRFADGEVVTMHVISIVEETPVGREGETLTARSPLAQ 128
Query 131 ALAGHQPGDTVTYSTPQGPNQVQLLAVKLP 160
ALAG QPGDTVTY TPQG QV+L+AVKLP
Sbjct 129 ALAGRQPGDTVTYPTPQGEKQVELIAVKLP 158
>gi|118466969|ref|YP_879527.1| nucleoside diphosphate kinase regulator [Mycobacterium avium
104]
gi|118168256|gb|ABK69153.1| nucleoside diphosphate kinase regulator [Mycobacterium avium
104]
Length=158
Score = 224 bits (571), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/150 (84%), Positives = 131/150 (88%), Gaps = 0/150 (0%)
Query 11 ADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELD 70
ADAAR +L AEL RLRQRRDRLEVEVKNDRGM+GDHGDAAEAIQRADEL +L DRINELD
Sbjct 9 ADAARKNLEAELDRLRQRRDRLEVEVKNDRGMVGDHGDAAEAIQRADELVVLSDRINELD 68
Query 71 RRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPLGQ 130
RRLR GP S TLPGGTEVTLRF DGEVVTMHVIS+VEETPVGRE ETLTARSPL Q
Sbjct 69 RRLRAGPPDADTSATLPGGTEVTLRFADGEVVTMHVISIVEETPVGREGETLTARSPLAQ 128
Query 131 ALAGHQPGDTVTYSTPQGPNQVQLLAVKLP 160
ALAG QPGDTVTY TPQG QV+L+AVKLP
Sbjct 129 ALAGRQPGDTVTYPTPQGEKQVELIAVKLP 158
>gi|254773292|ref|ZP_05214808.1| nucleoside diphosphate kinase regulator [Mycobacterium avium
subsp. avium ATCC 25291]
Length=158
Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/150 (83%), Positives = 130/150 (87%), Gaps = 0/150 (0%)
Query 11 ADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELD 70
ADAAR +L AEL RLRQRRDRLEVEVKNDRGM+GDHGDAAEAIQRADEL +L DRINELD
Sbjct 9 ADAARKNLEAELDRLRQRRDRLEVEVKNDRGMVGDHGDAAEAIQRADELVVLSDRINELD 68
Query 71 RRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPLGQ 130
RRLR GP S TLPGGTEVTLRF DGEVVTM VIS+VEETPVGRE ETLTARSPL Q
Sbjct 69 RRLRAGPPDADTSATLPGGTEVTLRFADGEVVTMQVISIVEETPVGREGETLTARSPLAQ 128
Query 131 ALAGHQPGDTVTYSTPQGPNQVQLLAVKLP 160
ALAG QPGDTVTY TPQG QV+L+AVKLP
Sbjct 129 ALAGRQPGDTVTYPTPQGEKQVELIAVKLP 158
>gi|134100846|ref|YP_001106507.1| nucleoside diphosphate kinase regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|291008641|ref|ZP_06566614.1| nucleoside diphosphate kinase regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|133913469|emb|CAM03582.1| nucleoside diphosphate kinase regulator [Saccharopolyspora erythraea
NRRL 2338]
Length=162
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/149 (49%), Positives = 89/149 (60%), Gaps = 2/149 (1%)
Query 14 ARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRL 73
AR L E LR +R L E+ R +GD GD + A++ ADELA DRI L+RRL
Sbjct 12 ARARLEEEARSLRAQRRHLAEELSQ-RDPVGDRGDDSLALEGADELAWYDDRIAALERRL 70
Query 74 R-TGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPLGQAL 132
G G+E LP GTEV +RF DG V + V+ + EE P G E +T+T+ SPL AL
Sbjct 71 TGRGRRAGQGAEGLPPGTEVRVRFEDGTVQELRVVGIPEEVPEGEEDQTMTSDSPLALAL 130
Query 133 AGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161
AG G VTYSTP GP +V LL V+LPS
Sbjct 131 AGGSAGTDVTYSTPDGPARVHLLDVRLPS 159
>gi|257054902|ref|YP_003132734.1| nucleoside diphosphate kinase regulator [Saccharomonospora viridis
DSM 43017]
gi|256584774|gb|ACU95907.1| transcription elongation factor [Saccharomonospora viridis DSM
43017]
Length=154
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/152 (43%), Positives = 87/152 (58%), Gaps = 4/152 (2%)
Query 9 GLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINE 68
GL+ A R L EL +LR++R L + D +GD D A+ ++R++ ++ L RINE
Sbjct 6 GLSPATRSRLERELEQLRKQRAELLPRLGED--PLGDSADQADLVERSEVVSRLDRRINE 63
Query 69 LDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPL 128
+ L G LP GT+VTLRF DG V M V+ V E + TLTA SPL
Sbjct 64 VVDLLH-GQISTESEGGLPSGTKVTLRFDDGSVEDMVVVGVAAEADED-DTSTLTADSPL 121
Query 129 GQALAGHQPGDTVTYSTPQGPNQVQLLAVKLP 160
GQALAGHQ GDTVTY TP+G +++ + P
Sbjct 122 GQALAGHQEGDTVTYRTPKGEVTAEIVKLTPP 153
>gi|289759954|ref|ZP_06519332.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289715518|gb|EFD79530.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=40
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/40 (98%), Positives = 40/40 (100%), Gaps = 0/40 (0%)
Query 122 LTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161
+TARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS
Sbjct 1 MTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 40
>gi|300790568|ref|YP_003770859.1| transcription elongation factor GreA [Amycolatopsis mediterranei
U32]
gi|299800082|gb|ADJ50457.1| transcription elongation factor GreA [Amycolatopsis mediterranei
U32]
gi|340532255|gb|AEK47460.1| nucleoside diphosphate kinase regulator [Amycolatopsis mediterranei
S699]
Length=151
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/153 (37%), Positives = 84/153 (55%), Gaps = 9/153 (5%)
Query 8 KGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRIN 67
KGL+ AAR L E+ LR +R L + ++ GD D A+ I RA+ A L +I
Sbjct 7 KGLSPAARSQLEKEIENLRAQRAALAPQ-PGEQERTGDAADQADVIDRAEAAARLDRQIA 65
Query 68 ELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSP 127
+L ++ G G+ LP GT V+LRF DG+ T V++V G +A+ +T+ SP
Sbjct 66 DLAAKMEHG---GYGNSQLPDGTVVSLRFADGDEETFQVVTVP-----GEDADAITSDSP 117
Query 128 LGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLP 160
LG AL G + GD +TY TP+G + ++ + P
Sbjct 118 LGLALVGAKAGDEITYRTPRGDAKATVVKLTPP 150
>gi|328886579|emb|CCA59818.1| transcription elongation factor, putative [Streptomyces venezuelae
ATCC 10712]
Length=155
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/141 (41%), Positives = 79/141 (57%), Gaps = 6/141 (4%)
Query 10 LADAARDHLAAELARLRQRRDRLEVEVKNDRG-MIGDHGDAAEAIQRADELAILGDRINE 68
++ AAR+ L EL LR R+ + V +++ G GD D A+ +QR EL L RI+E
Sbjct 8 ISAAAREALERELDELRTEREAVAVTLRDGGGDETGDRADQADELQRGTELTRLDRRIDE 67
Query 69 LDRRLRTGPTPWS-GSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSP 127
L RLR + ++ + G+ VT+RF DG T+ + E +A +TA SP
Sbjct 68 LHGRLREAAVAGAPRTDAVGVGSTVTVRFEDGTETTVQI----GEVAAVLDATMVTADSP 123
Query 128 LGQALAGHQPGDTVTYSTPQG 148
LG AL GH+ GDTVTY TPQG
Sbjct 124 LGGALLGHRAGDTVTYVTPQG 144
>gi|302530802|ref|ZP_07283144.1| predicted protein [Streptomyces sp. AA4]
gi|302439697|gb|EFL11513.1| predicted protein [Streptomyces sp. AA4]
Length=155
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/154 (36%), Positives = 85/154 (56%), Gaps = 9/154 (5%)
Query 8 KGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRIN 67
KGL++AAR L E+A LR +R+ L + ++ GD D A+ I RA+ A L +I
Sbjct 10 KGLSEAARRQLEKEIADLRAQREALSPQ-PGEQERTGDAADQADVIDRAEAAARLDRQIA 68
Query 68 ELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSP 127
++ +L G S LP GT V+LRF DG+ V+++ G +A+ +T+ SP
Sbjct 69 DVTAKLEHG---AYDSSLLPDGTRVSLRFSDGDEEEFTVVTLP-----GEDADAITSDSP 120
Query 128 LGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161
LG ALA + G+ ++Y TP+G +L + P+
Sbjct 121 LGLALATAKAGEEISYRTPRGQATATVLKLTPPA 154
>gi|291455579|ref|ZP_06594969.1| nucleoside diphosphate kinase regulator [Streptomyces albus J1074]
gi|291358528|gb|EFE85430.1| nucleoside diphosphate kinase regulator [Streptomyces albus J1074]
Length=160
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/140 (40%), Positives = 77/140 (55%), Gaps = 11/140 (7%)
Query 13 AARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRR 72
AAR L ELA +R R+ + +++ + GD GDAA+ +QR+ +LA L RI ++ R
Sbjct 11 AARHALEQELADVRAERETVAATLQDPDIVAGDRGDAADQLQRSGDLARLDARIEDITTR 70
Query 73 LR----TGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPL 128
LR GP P + VT+RF DG T+ + V + G +A +TA SPL
Sbjct 71 LRQADDAGPPPAGVVGVG---STVTVRFDDGAEQTVSIGEVTQ----GYDASLVTADSPL 123
Query 129 GQALAGHQPGDTVTYSTPQG 148
G+AL G +PGD V Y TP G
Sbjct 124 GKALMGCRPGDAVRYRTPDG 143
>gi|291300234|ref|YP_003511512.1| GreA/GreB family elongation factor [Stackebrandtia nassauensis
DSM 44728]
gi|290569454|gb|ADD42419.1| GreA/GreB family elongation factor [Stackebrandtia nassauensis
DSM 44728]
Length=152
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/138 (36%), Positives = 75/138 (55%), Gaps = 10/138 (7%)
Query 14 ARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRL 73
AR L +LA +R RDR+ + + A E +QR +L +L R+ +L RL
Sbjct 12 ARHTLEQDLAEVRAERDRVAATLTDTDTTGDSADQAQE-LQRVTDLQLLDARVEKLTARL 70
Query 74 RTGPTPWSG-SETLPGGTEVTLRFPDGEVVTMHV--ISVVEETPVGREAETLTARSPLGQ 130
T G ++ + G+ VT+RF D T+H+ I+ V++ + +TA SPLG+
Sbjct 71 DASATATQGRTDLVDVGSTVTIRFSDDTTETLHIGEIADVDDQLL------VTAGSPLGR 124
Query 131 ALAGHQPGDTVTYSTPQG 148
AL GH+ GDTV+Y+TP G
Sbjct 125 ALLGHRAGDTVSYNTPSG 142
>gi|331697299|ref|YP_004333538.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans
CB1190]
gi|326951988|gb|AEA25685.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans
CB1190]
Length=151
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/148 (34%), Positives = 71/148 (48%), Gaps = 6/148 (4%)
Query 15 RDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLR 74
R L EL LR RR LE + +D D G+ DE+ + RI +L ++
Sbjct 9 RHALLEELDLLRARRRELEWSLISDDHRPHDFGEHGATTALRDEIDWVDRRIRDLVHQVW 68
Query 75 TGPTP-WSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPLGQALA 133
P SE + + VTLRFPDG T+ V +E + +T SPLG+AL
Sbjct 69 EAGRPDGDTSERVGLYSVVTLRFPDGSSETLQVTRFPDE-----DVPAVTPESPLGRALL 123
Query 134 GHQPGDTVTYSTPQGPNQVQLLAVKLPS 161
G QPGD +T+ P G + ++ V+ P+
Sbjct 124 GAQPGDEITWKAPDGRLRARVERVRRPA 151
>gi|191637035|ref|YP_001986201.1| transcription elongation factor GreA [lactobacillus casei BL23]
gi|239631048|ref|ZP_04674079.1| transcription elongation factor greA 1 [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|301065369|ref|YP_003787392.1| transcription elongation factor [Lactobacillus casei str. Zhang]
gi|190711337|emb|CAQ65343.1| Transcription elongation factor [Lactobacillus casei BL23]
gi|239527331|gb|EEQ66332.1| transcription elongation factor greA 1 [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|300437776|gb|ADK17542.1| Transcription elongation factor [Lactobacillus casei str. Zhang]
gi|327381062|gb|AEA52538.1| Transcription elongation factor GreA [Lactobacillus casei LC2W]
gi|327384237|gb|AEA55711.1| Transcription elongation factor GreA [Lactobacillus casei BD-II]
Length=155
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/143 (33%), Positives = 69/143 (49%), Gaps = 9/143 (6%)
Query 22 LARLRQRRDRLEV----EVKN--DRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRT 75
LA L+Q + L+ ++KN D +GD + AE EL L R+ LD+ +R
Sbjct 12 LANLKQEVEDLKTIRPAKIKNLADAAALGDRSENAEYSAAKRELRQLEGRLRYLDKLIRY 71
Query 76 GP-TPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPLGQALAG 134
T + S+ G +TL+F D E + + E +G++ L SPLG A+
Sbjct 72 AKVTHPAASDIADIGNRITLKFDDDEDQATYELVGPAEAGMGQD--KLAINSPLGAAIRQ 129
Query 135 HQPGDTVTYSTPQGPNQVQLLAV 157
H GDTVT + P G QV L+ +
Sbjct 130 HHAGDTVTVTAPSGSYQVTLMNI 152
>gi|116493793|ref|YP_805527.1| transcription elongation factor GreA [Lactobacillus casei ATCC
334]
gi|116103943|gb|ABJ69085.1| transcription elongation factor GreA [Lactobacillus casei ATCC
334]
Length=155
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/143 (33%), Positives = 69/143 (49%), Gaps = 9/143 (6%)
Query 22 LARLRQRRDRLEV----EVKN--DRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRT 75
LA L+Q + L+ ++KN D +GD + AE EL L R+ LD+ +R
Sbjct 12 LANLKQEVEDLKTIRPAKIKNLADAAALGDRSENAEYSAAKRELRQLEGRLRYLDKLIRY 71
Query 76 GP-TPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPLGQALAG 134
T + S+ G +TL+F D E + + E +G++ L SPLG A+
Sbjct 72 AKVTHPAASDIADIGNRITLKFDDDEDHATYELVGPAEAGMGQD--KLAINSPLGAAIRQ 129
Query 135 HQPGDTVTYSTPQGPNQVQLLAV 157
H GDTVT + P G QV L+ +
Sbjct 130 HHAGDTVTVTAPSGSYQVTLMNI 152
>gi|259502254|ref|ZP_05745156.1| transcription elongation factor GreA 1 [Lactobacillus antri DSM
16041]
gi|259169872|gb|EEW54367.1| transcription elongation factor GreA 1 [Lactobacillus antri DSM
16041]
Length=168
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/140 (32%), Positives = 71/140 (51%), Gaps = 4/140 (2%)
Query 21 ELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRTGPTPW 80
E+ARL+ +R ++K R + GD + E EL L R+ L+++L+
Sbjct 29 EIARLQAQRPAKIEQLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLNKQLQYAEIIA 87
Query 81 -SGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPLGQALAGHQPGD 139
+ + T+ GT VTLRF D + V + I +E + ++ + SPLGQA+ + G
Sbjct 88 PTNAGTVDLGTSVTLRFEDDDDVATYRIVGKQEADLAKQ--KVAFDSPLGQAIMHQRAGT 145
Query 140 TVTYSTPQGPNQVQLLAVKL 159
TVT PQ P QV ++ + L
Sbjct 146 TVTVQAPQAPYQVTIIKIAL 165
>gi|227529977|ref|ZP_03960026.1| transcription elongation factor GreA [Lactobacillus vaginalis
ATCC 49540]
gi|227350100|gb|EEJ40391.1| transcription elongation factor GreA [Lactobacillus vaginalis
ATCC 49540]
Length=172
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/142 (31%), Positives = 74/142 (53%), Gaps = 4/142 (2%)
Query 21 ELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRTGPTPW 80
E+ +L+ +R ++K R + GD + E EL L R+ L+++L+
Sbjct 29 EIEKLQAQRPAKIAQLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLNKQLQYAEIIK 87
Query 81 -SGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPLGQALAGHQPGD 139
+ S+T+ GT VTL+F D + + I +E + ++ ++ SPLGQAL + G
Sbjct 88 PTDSQTIDLGTTVTLQFIDDDEQVNYTIVGKQEADLQKQK--ISFDSPLGQALLHQKVGQ 145
Query 140 TVTYSTPQGPNQVQLLAVKLPS 161
TV+ PQ QV++LAV+L S
Sbjct 146 TVSVQAPQSTYQVKILAVRLTS 167
>gi|334881916|emb|CCB82852.1| transcription elongation factor GreA [Lactobacillus pentosus
MP-10]
Length=186
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/140 (30%), Positives = 71/140 (51%), Gaps = 6/140 (4%)
Query 21 ELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRTGPTPW 80
E+ L+Q+R +++ +GD + AE +L L R+ L+++L+
Sbjct 49 EIEDLKQQRPE-RIKILAAAAALGDRSENAEYSSAKRDLGRLESRLRFLNKQLQYAQIVQ 107
Query 81 -SGSETLPGGTEVTLRF-PDGEVVTMHVISVVEETPVGREAETLTARSPLGQALAGHQPG 138
+ ++ L G VT+ F D + +T ++ E E + ++ SP+GQALA H G
Sbjct 108 PADNDQLDIGKFVTIEFLDDHDQITYQLVGKQE---ANLEQQKISFTSPIGQALANHTVG 164
Query 139 DTVTYSTPQGPNQVQLLAVK 158
D VT + P G QV+++AVK
Sbjct 165 DVVTVNAPNGAYQVKVIAVK 184
>gi|339637873|emb|CCC16870.1| transcription elongation factor GreA [Lactobacillus pentosus
IG1]
Length=187
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/140 (30%), Positives = 71/140 (51%), Gaps = 6/140 (4%)
Query 21 ELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRTGPTPW 80
E+ L+Q+R +++ +GD + AE +L L R+ L+++L+
Sbjct 50 EIEDLKQQRPE-RIKILAAAAALGDRSENAEYSSAKRDLGRLESRLRFLNKQLQYAQIVQ 108
Query 81 -SGSETLPGGTEVTLRF-PDGEVVTMHVISVVEETPVGREAETLTARSPLGQALAGHQPG 138
+ ++ L G VT+ F D + +T ++ E E + ++ SP+GQALA H G
Sbjct 109 PADNDQLDIGKFVTIEFLDDHDQITYQLVGKQE---ANLEQQKISFTSPIGQALANHTVG 165
Query 139 DTVTYSTPQGPNQVQLLAVK 158
D VT + P G QV+++AVK
Sbjct 166 DVVTVNAPNGAYQVKVIAVK 185
>gi|311031568|ref|ZP_07709658.1| transcription elongation factor GreA [Bacillus sp. m3-13]
Length=157
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/153 (30%), Positives = 70/153 (46%), Gaps = 8/153 (5%)
Query 10 LADAARDHLAAELARLRQRRDRLEVE-VKNDRGMIGDHGDAAEAIQRADELAILGDRINE 68
+ A +D L EL L+ R + VE +K R GD + +E +E A + RI
Sbjct 9 MTQAGKDKLVQELENLKSVRRKEVVERIKIARSF-GDLSENSEYDSAKEEQAFVEGRITL 67
Query 69 LDRRLRTGPTPWSGSETLPGGTEVTLRF---PDGEVVTMHVISVVEETPVGREAETLTAR 125
L++ +R +T G T+ F PDGE T ++ E P ++
Sbjct 68 LEQMVRNAKIIQEDKDTDAVGLGKTVTFVELPDGEEETYTIVGSAEADPF---EGNISNE 124
Query 126 SPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 158
SP+G +L G + D VT TP G V++++VK
Sbjct 125 SPMGSSLMGKRVNDEVTIQTPGGEMNVKIVSVK 157
>gi|138896117|ref|YP_001126570.1| transcription elongation factor GreA [Geobacillus thermodenitrificans
NG80-2]
gi|196249010|ref|ZP_03147710.1| transcription elongation factor GreA [Geobacillus sp. G11MC16]
gi|166200664|sp|A4IR71.1|GREA_GEOTN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|134267630|gb|ABO67825.1| Transcription elongation factor [Geobacillus thermodenitrificans
NG80-2]
gi|196211886|gb|EDY06645.1| transcription elongation factor GreA [Geobacillus sp. G11MC16]
Length=158
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/155 (31%), Positives = 73/155 (48%), Gaps = 11/155 (7%)
Query 10 LADAARDHLAAELARLRQRRDRLEVE-VKNDRGMIGDHGDAAEAIQRADELAILGDRINE 68
+ ++ L EL L+ + + VE +K RG GD + +E DE A + RI
Sbjct 9 MTKEGKEKLEQELEYLKTVKRKEVVERIKIARGF-GDLSENSEYDAAKDEQAFVESRIQM 67
Query 69 LDRRLRTGPTPWSGSET---LPGGTEVT-LRFPDGEVVTMHVISVVEETPV-GREAETLT 123
L+ +R E + G VT + PDGE T ++ E P G+ ++
Sbjct 68 LETMIRNAVIIEEDKENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGK----IS 123
Query 124 ARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 158
SP+ ++L GH+ GD VT TP G V+++AVK
Sbjct 124 NDSPIAKSLIGHRVGDEVTVQTPGGEMLVKIVAVK 158
>gi|336391768|ref|ZP_08573167.1| transcription elongation factor GreA [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length=154
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/144 (30%), Positives = 74/144 (52%), Gaps = 6/144 (4%)
Query 16 DHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRT 75
D +AAE+A+L+Q + ++V +GD + AE +L L R+ L+++L+
Sbjct 14 DQIAAEIAQLQQEKPH-RIKVLQAARALGDLSENAEYSSAKHDLRHLESRLRYLNKQLQY 72
Query 76 GPTPWSGSE-TLPGGTEVTLRF-PDGEVVTMHVISVVEETPVGREAETLTARSPLGQALA 133
++ T+ G VTL+F D + VT ++ E V A ++ SPLGQAL
Sbjct 73 AQIIAPKTDGTIDIGNTVTLKFLDDHDQVTYQLVGKEE---VDVTAGKISTASPLGQALR 129
Query 134 GHQPGDTVTYSTPQGPNQVQLLAV 157
G + +T ++P+ QV++L V
Sbjct 130 GQKAAAVITVTSPEATYQVKILTV 153
>gi|345023308|ref|ZP_08786921.1| transcriptional elongation factor [Ornithinibacillus sp. TW25]
Length=158
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/158 (28%), Positives = 78/158 (50%), Gaps = 11/158 (6%)
Query 7 SKGLADAARDHLAAELARLR-QRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDR 65
S + ++ L EL L+ +RR + +K RG GD + +E DE A + R
Sbjct 6 SYYMTQEGKEKLEQELLYLKTERRQEVVERIKVARGF-GDLSENSEYDAAKDEQAFVESR 64
Query 66 INELDRRLRTGPTPWSGSET---LPGGTEVT-LRFPDGEVVTMHVISVVEETPV-GREAE 120
I+++++ +R + +E + G VT + PDGE T ++ E P G+
Sbjct 65 ISQVEKMIRNAVIIENDNENPNMVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGK--- 121
Query 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 158
++ SP+ ++L GH+ G+ + TP G QV+++ V+
Sbjct 122 -ISNDSPMAKSLLGHEVGEELAVVTPGGEIQVKIIKVQ 158
>gi|326331165|ref|ZP_08197461.1| transcription elongation factor GreA [Nocardioidaceae bacterium
Broad-1]
gi|325951060|gb|EGD43104.1| transcription elongation factor GreA [Nocardioidaceae bacterium
Broad-1]
Length=169
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/157 (32%), Positives = 75/157 (48%), Gaps = 11/157 (7%)
Query 10 LADAARDHLAAELARLRQ-RRDRLEVEVKNDRGMIGDHGDAAE--AIQRA-DELAILGDR 65
L+ A D L AEL L+ RR + E+ + R D GD E A +E L +
Sbjct 14 LSKGAFDKLTAELEYLKGPRRQEILAEISSAR----DEGDLKENGGYHAAREEQGKLEGQ 69
Query 66 INELDRRLRTGPTPW-SGSETLPGGTEVTLRFP--DGEVVTMHVISVVEETPVGREAETL 122
I +L+ LR T + + G VT +F D + +I+ +E E
Sbjct 70 IQQLEALLRKADTTVPEDDDVVSVGKLVTFKFEGDDDDEAETRLIASIEMKDYAGGVEIS 129
Query 123 TARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKL 159
+A SP+G AL G + GDTVTY P+GP +V++L ++
Sbjct 130 SAASPIGAALIGARVGDTVTYEGPRGPLKVEILKTEV 166
>gi|108805000|ref|YP_644937.1| transcription elongation factor GreA [Rubrobacter xylanophilus
DSM 9941]
gi|108766243|gb|ABG05125.1| transcription elongation factor GreA [Rubrobacter xylanophilus
DSM 9941]
Length=154
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/124 (34%), Positives = 63/124 (51%), Gaps = 8/124 (6%)
Query 43 IGDHGDAAEAIQRADELAILGDRINELDRRLRTGPT--PWSGSE--TLPGGTEVTLRFP- 97
GD + +E +E +L RI+EL RRLR P S +E + GT VTLR
Sbjct 34 FGDISENSEYDDAKNEQGLLERRISELQRRLRNAKIVDPASSAEEGAVDLGTRVTLRVVG 93
Query 98 DGEVVTMHVISVVEETPVGREAETLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAV 157
DG T ++ E P + L+ SP+G+AL + G+ V STP+G + ++++V
Sbjct 94 DGRERTFQIVGANEADPA---SGKLSHASPVGKALLRRRVGEKVRVSTPRGATEYEIVSV 150
Query 158 KLPS 161
+ S
Sbjct 151 EAAS 154
>gi|162451849|ref|YP_001614216.1| hypothetical protein sce3576 [Sorangium cellulosum 'So ce 56']
gi|161162431|emb|CAN93736.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
Length=157
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/148 (31%), Positives = 72/148 (49%), Gaps = 10/148 (6%)
Query 17 HLAAELARLRQ-RRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRT 75
L+ ELARLR R R+ EV D GD + AE I +L + R++ L +RL
Sbjct 14 RLSEELARLRSVERPRVVQEV-ADAAAQGDRSENAEYIYGKKKLREIDRRMHYLTKRLEK 72
Query 76 G----PTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPLGQA 131
P+ G + G T V + DG T ++ E + A ++ RSP+G++
Sbjct 73 AVVVDPSEQRGDKVFFGAT-VEIEDEDGARRTYQIVG---EDEIDSAAGRISWRSPVGRS 128
Query 132 LAGHQPGDTVTYSTPQGPNQVQLLAVKL 159
L G + GD +T P G +++L++V+
Sbjct 129 LLGKRAGDVITVRRPAGEAEMELISVRY 156
>gi|227514075|ref|ZP_03944124.1| transcription elongation factor [Lactobacillus fermentum ATCC
14931]
gi|260662496|ref|ZP_05863391.1| elongation factor GreA [Lactobacillus fermentum 28-3-CHN]
gi|227087556|gb|EEI22868.1| transcription elongation factor [Lactobacillus fermentum ATCC
14931]
gi|260553187|gb|EEX26130.1| elongation factor GreA [Lactobacillus fermentum 28-3-CHN]
Length=160
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/137 (33%), Positives = 60/137 (44%), Gaps = 3/137 (2%)
Query 25 LRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRTGPT-PWSGS 83
L+Q+R L +K R + GD + E EL L R+ LD++L S
Sbjct 24 LKQKRPTLITRLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLDKQLTYAKVIDVSDD 82
Query 84 ETLPGGTEVTLRF-PDGEVVTMHVISVVEETPVGREAETLTARSPLGQALAGHQPGDTVT 142
+ G VT+RF D E T ++ + E L SPLG AL GH G TVT
Sbjct 83 GKVALGKVVTIRFLDDQEEATYQIVGRHQAEQASLTEEVLAFDSPLGLALKGHTAGTTVT 142
Query 143 YSTPQGPNQVQLLAVKL 159
P QV ++ VK+
Sbjct 143 VHAPAASYQVTIITVKV 159
>gi|184156278|ref|YP_001844618.1| transcription elongation factor GreA [Lactobacillus fermentum
IFO 3956]
gi|183227622|dbj|BAG28138.1| elongation factor GreA [Lactobacillus fermentum IFO 3956]
Length=160
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/137 (33%), Positives = 60/137 (44%), Gaps = 3/137 (2%)
Query 25 LRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRTGPT-PWSGS 83
L+Q+R L +K R + GD + E EL L R+ LD++L S
Sbjct 24 LKQKRPTLITRLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLDKQLTYAKVIDVSDD 82
Query 84 ETLPGGTEVTLRF-PDGEVVTMHVISVVEETPVGREAETLTARSPLGQALAGHQPGDTVT 142
+ G VT+RF D E T ++ + E L SPLG AL GH G TVT
Sbjct 83 GKVALGKVVTIRFLDDQEEATYQIVGRHQAEQASLTEEVLAFDSPLGLALKGHTAGTTVT 142
Query 143 YSTPQGPNQVQLLAVKL 159
P QV ++ VK+
Sbjct 143 VHAPAASYQVTIITVKV 159
>gi|329666577|gb|AEB92525.1| transcription elongation factor GreA [Lactobacillus johnsonii
DPC 6026]
gi|338762159|gb|EGP13428.1| transcription elongation factor GreA [Lactobacillus johnsonii
pf01]
Length=153
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/140 (32%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query 21 ELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRTGPTPW 80
E+ARL++ R R +++ + +GD + +E EL L R+ LD++LR
Sbjct 18 EIARLKKDRPR-RIKILQEARSMGDLSENSEYTTAKMELGHLQSRLRYLDKQLRYSEIIQ 76
Query 81 SG-SETLPGGTEVTLRFP-DGEVVTMHVISVVE-ETPVGREAETLTARSPLGQALAGHQP 137
S T+ G+ VTL F D E ++ +E + G+ ++ SPLGQAL +
Sbjct 77 KDESGTIDLGSNVTLLFDGDDEAEKYRIVGRMEADLAKGK----ISFDSPLGQALMKQKA 132
Query 138 GDTVTYSTPQGPNQVQLLAV 157
G TVT P G V+++AV
Sbjct 133 GATVTVEAPAGSYDVKIIAV 152
>gi|328480203|gb|EGF49134.1| transcription elongation factor GreA [Lactobacillus rhamnosus
MTCC 5462]
Length=165
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/145 (32%), Positives = 65/145 (45%), Gaps = 9/145 (6%)
Query 20 AELARLRQRRDRLEV----EVKN--DRGMIGDHGDAAEAIQRADELAILGDRINELDRRL 73
A LA L+Q L+ ++KN + +GD + AE EL L R+ LD+ +
Sbjct 10 AGLANLKQEVADLKAIRPAKIKNLAEAAALGDRSENAEYSAAKRELRQLEGRLRYLDKLI 69
Query 74 RTGPTPWSGSETLPG-GTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPLGQAL 132
R + L G VTL+F D + +V G A L SPLG A+
Sbjct 70 RYAKVTTPAAANLADIGNWVTLKFDDDQ--DEDTYELVGPAEAGMGAAKLAINSPLGAAV 127
Query 133 AGHQPGDTVTYSTPQGPNQVQLLAV 157
H GDTVT + P G QV ++A+
Sbjct 128 RRHYVGDTVTVTAPSGTYQVTVMAI 152
>gi|227888966|ref|ZP_04006771.1| transcription elongation factor GreA [Lactobacillus johnsonii
ATCC 33200]
gi|268318753|ref|YP_003292409.1| Transcription elongation factor greA [Lactobacillus johnsonii
FI9785]
gi|227850554|gb|EEJ60640.1| transcription elongation factor GreA [Lactobacillus johnsonii
ATCC 33200]
gi|262397128|emb|CAX66142.1| Transcription elongation factor greA [Lactobacillus johnsonii
FI9785]
Length=153
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/140 (32%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query 21 ELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRTGPTPW 80
E+ARL++ R R +++ + +GD + +E EL L R+ LD++LR
Sbjct 18 EIARLKKDRPR-RIKILQEARSMGDLSENSEYTTAKMELGHLQSRLRYLDKQLRYSEIIQ 76
Query 81 SG-SETLPGGTEVTLRFP-DGEVVTMHVISVVE-ETPVGREAETLTARSPLGQALAGHQP 137
S T+ G+ VTL F D E ++ +E + G+ ++ SPLGQAL +
Sbjct 77 KDESGTIDLGSNVTLLFDGDDEAEKYRIVGRMEADLAKGK----ISFDSPLGQALMKKKA 132
Query 138 GDTVTYSTPQGPNQVQLLAV 157
G TVT P G V+++AV
Sbjct 133 GATVTVEAPAGSYDVKIIAV 152
>gi|28377155|ref|NP_784047.1| transcription elongation factor GreA [Lactobacillus plantarum
WCFS1]
gi|38257536|sp|Q88ZS9.1|GREA1_LACPL RecName: Full=Transcription elongation factor greA 1; AltName:
Full=Transcript cleavage factor greA 1
gi|342240524|emb|CCC77758.1| transcription elongation factor GreA [Lactobacillus plantarum
WCFS1]
Length=156
Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/117 (31%), Positives = 59/117 (51%), Gaps = 5/117 (4%)
Query 44 GDHGDAAEAIQRADELAILGDRINELDRRLRTGPTPW-SGSETLPGGTEVTLRF-PDGEV 101
GD + AE +L L R+ L+++L+ + ++ L G VT+ F D +
Sbjct 41 GDRSENAEYSSAKRDLGRLESRLRYLNKQLQYAQIVQPADNDQLDIGKFVTIEFLDDHDQ 100
Query 102 VTMHVISVVEETPVGREAETLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 158
+T ++ E E + ++ SP+GQALA H D VT + P G QV+++AVK
Sbjct 101 ITYQLVGKQE---ANLEQQKISFTSPIGQALANHTVDDVVTVNAPNGAYQVKVIAVK 154
>gi|335357235|ref|ZP_08549105.1| transcription elongation factor [Lactobacillus animalis KCTC
3501]
Length=157
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/119 (30%), Positives = 58/119 (49%), Gaps = 6/119 (5%)
Query 43 IGDHGDAAEAIQRADELAILGDRINELDRRLRTGPTPWSGS---ETLPGGTEVTLRFPDG 99
GD + +E +E ++L RI E++ L +GS + + G V + D
Sbjct 42 FGDLSENSEYEAAKNEQSMLEGRIKEVENMLNHAEIIDNGSIAADEVAIGKTVVFQEDDD 101
Query 100 EVVTMHVISVVEETPVGREAETLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 158
E T ++ E P A ++ SP+ Q+L GH+ G+TV+ TP G QV+++ VK
Sbjct 102 EPETYQIVGAAEADPF---AGKISNESPIAQSLVGHKVGETVSVETPGGEMQVKIIEVK 157
>gi|184154324|ref|YP_001842665.1| transcription elongation factor GreA [Lactobacillus reuteri JCM
1112]
gi|183225668|dbj|BAG26185.1| transcription elongation factor GreA [Lactobacillus reuteri JCM
1112]
Length=156
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/142 (31%), Positives = 73/142 (52%), Gaps = 8/142 (5%)
Query 21 ELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRTGP--T 78
++A+L+Q+R ++K R + GD + E EL L R+ L+++L+ T
Sbjct 20 QIAKLQQQRPAKIEQLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLNKQLQYAEIVT 78
Query 79 PWSGSETLPGGTEVTLRFPD-GEVVTMHVISVVEETPVGREAETLTARSPLGQALAGHQP 137
P T+ GT VT+ F D E T H++ +E + ++ ++ SPLGQA+
Sbjct 79 P-KNDHTIDLGTTVTIEFEDDHEQETYHIVGK-QEADLAKQK--ISFDSPLGQAILHQTA 134
Query 138 GDTVTYSTPQGPNQVQLLAVKL 159
G TVT PQ +V+++ V+L
Sbjct 135 GTTVTVEAPQSSYKVKIVKVEL 156
>gi|227364132|ref|ZP_03848230.1| transcription elongation factor GreA [Lactobacillus reuteri MM2-3]
gi|325683336|ref|ZP_08162852.1| transcription elongation factor [Lactobacillus reuteri MM4-1A]
gi|227070857|gb|EEI09182.1| transcription elongation factor GreA [Lactobacillus reuteri MM2-3]
gi|324977686|gb|EGC14637.1| transcription elongation factor [Lactobacillus reuteri MM4-1A]
Length=192
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/142 (31%), Positives = 73/142 (52%), Gaps = 8/142 (5%)
Query 21 ELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRTGP--T 78
++A+L+Q+R ++K R + GD + E EL L R+ L+++L+ T
Sbjct 56 QIAKLQQQRPAKIEQLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLNKQLQYAEIVT 114
Query 79 PWSGSETLPGGTEVTLRFPD-GEVVTMHVISVVEETPVGREAETLTARSPLGQALAGHQP 137
P T+ GT VT+ F D E T H++ +E + ++ ++ SPLGQA+
Sbjct 115 P-KNDHTIDLGTTVTIEFEDDHEQETYHIVGK-QEADLAKQK--ISFDSPLGQAILHQTA 170
Query 138 GDTVTYSTPQGPNQVQLLAVKL 159
G TVT PQ +V+++ V+L
Sbjct 171 GTTVTVEAPQSSYKVKIVKVEL 192
>gi|148544990|ref|YP_001272360.1| transcription elongation factor GreA [Lactobacillus reuteri DSM
20016]
gi|148532024|gb|ABQ84023.1| transcription elongation factor GreA [Lactobacillus reuteri DSM
20016]
Length=165
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/142 (31%), Positives = 73/142 (52%), Gaps = 8/142 (5%)
Query 21 ELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRTGP--T 78
++A+L+Q+R ++K R + GD + E EL L R+ L+++L+ T
Sbjct 29 QIAKLQQQRPAKIEQLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLNKQLQYAEIVT 87
Query 79 PWSGSETLPGGTEVTLRFPD-GEVVTMHVISVVEETPVGREAETLTARSPLGQALAGHQP 137
P T+ GT VT+ F D E T H++ +E + ++ ++ SPLGQA+
Sbjct 88 P-KNDHTIDLGTTVTIEFEDDHEQETYHIVGK-QEADLAKQK--ISFDSPLGQAILHQTA 143
Query 138 GDTVTYSTPQGPNQVQLLAVKL 159
G TVT PQ +V+++ V+L
Sbjct 144 GTTVTVEAPQSSYKVKIVKVEL 165
>gi|199597924|ref|ZP_03211349.1| transcription elongation factor GreA [Lactobacillus rhamnosus
HN001]
gi|229550850|ref|ZP_04439575.1| transcription elongation factor GreA [Lactobacillus rhamnosus
LMS2-1]
gi|258507251|ref|YP_003170002.1| transcription elongation factor GreA [Lactobacillus rhamnosus
GG]
6 more sequence titles
Length=165
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/145 (32%), Positives = 64/145 (45%), Gaps = 9/145 (6%)
Query 20 AELARLRQRRDRLEV----EVKN--DRGMIGDHGDAAEAIQRADELAILGDRINELDRRL 73
A LA L+Q L+ ++KN + +GD + AE EL L R+ LD+ +
Sbjct 10 AGLANLKQEVADLKAIRPAKIKNLAEAAALGDRSENAEYSAAKRELRQLEGRLRYLDKLI 69
Query 74 RTGPTPWSGSETLPG-GTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPLGQAL 132
R + L G VTL F D + +V G A L SPLG A+
Sbjct 70 RYAKVTTPAAANLADIGNWVTLEFDDDQ--DEDTYELVGPAEAGMGAAKLAINSPLGAAV 127
Query 133 AGHQPGDTVTYSTPQGPNQVQLLAV 157
H GDTVT + P G QV ++A+
Sbjct 128 RRHHVGDTVTVTAPSGTYQVTVMAI 152
>gi|254555375|ref|YP_003061792.1| transcription elongation factor GreA [Lactobacillus plantarum
JDM1]
gi|308179372|ref|YP_003923500.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|254044302|gb|ACT61095.1| transcription elongation factor GreA [Lactobacillus plantarum
JDM1]
gi|308044863|gb|ADN97406.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ST-III]
Length=156
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/117 (31%), Positives = 58/117 (50%), Gaps = 5/117 (4%)
Query 44 GDHGDAAEAIQRADELAILGDRINELDRRLRTGPTPW-SGSETLPGGTEVTLRF-PDGEV 101
GD + AE +L L R+ L+++L+ + + L G VT+ F D +
Sbjct 41 GDRSENAEYSSAKRDLGRLESRLRYLNKQLQYAQIVQPADNNQLDIGKFVTIEFLDDHDQ 100
Query 102 VTMHVISVVEETPVGREAETLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 158
+T ++ E E + ++ SP+GQALA H D VT + P G QV+++AVK
Sbjct 101 ITYQLVGKQE---ANLEQQKISFTSPIGQALANHTVDDVVTVNAPNGAYQVKVIAVK 154
>gi|300766895|ref|ZP_07076808.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|300495433|gb|EFK30588.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
Length=187
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/117 (31%), Positives = 58/117 (50%), Gaps = 5/117 (4%)
Query 44 GDHGDAAEAIQRADELAILGDRINELDRRLRTGPTPW-SGSETLPGGTEVTLRF-PDGEV 101
GD + AE +L L R+ L+++L+ + + L G VT+ F D +
Sbjct 72 GDRSENAEYSSAKRDLGRLESRLRYLNKQLQYAQIVQPADNNQLDIGKFVTIEFLDDHDQ 131
Query 102 VTMHVISVVEETPVGREAETLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 158
+T ++ E E + ++ SP+GQALA H D VT + P G QV+++AVK
Sbjct 132 ITYQLVGKQE---ANLEQQKISFTSPIGQALANHTVDDVVTVNAPNGAYQVKVIAVK 185
>gi|333396131|ref|ZP_08477948.1| transcription elongation factor GreA [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
Length=154
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/143 (30%), Positives = 71/143 (50%), Gaps = 4/143 (2%)
Query 16 DHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRT 75
D +AAE+A+L+Q + + ++V +GD + AE +L L R+ L+++L+
Sbjct 14 DQIAAEIAQLQQEKPQ-RIKVLQAARALGDLSENAEYSSAKRDLRHLESRLRYLNKQLQY 72
Query 76 GPTPWSGSE-TLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAETLTARSPLGQALAG 134
++ T+ G VTL F D + + EE V A ++ SPLGQAL G
Sbjct 73 AQIIAPKTDGTVDIGNTVTLEFLDDHDQVAYQLVGKEEVDVT--AGKISTASPLGQALRG 130
Query 135 HQPGDTVTYSTPQGPNQVQLLAV 157
+ +T + P+ QV++L V
Sbjct 131 QKANVVITVTAPEATYQVKILTV 153
>gi|194467226|ref|ZP_03073213.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23]
gi|194454262|gb|EDX43159.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23]
Length=165
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/142 (31%), Positives = 73/142 (52%), Gaps = 8/142 (5%)
Query 21 ELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELAILGDRINELDRRLRTGP--T 78
++A+L+Q+R ++K R + GD + E EL L R+ L+++L+ T
Sbjct 29 QIAKLQQQRPAKIEQLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLNKQLQYAEIVT 87
Query 79 PWSGSETLPGGTEVTLRFPD-GEVVTMHVISVVEETPVGREAETLTARSPLGQALAGHQP 137
P T+ GT VT+ F D E T H++ +E + ++ ++ SPLGQAL
Sbjct 88 P-KNDHTIDLGTTVTIEFEDDHEQETYHIVGK-QEADLAKQK--ISFDSPLGQALLHKTA 143
Query 138 GDTVTYSTPQGPNQVQLLAVKL 159
G TVT PQ +V+++ V+L
Sbjct 144 GTTVTVEAPQSLYKVKIVKVEL 165
>gi|83589023|ref|YP_429032.1| GreA/GreB family elongation factor [Moorella thermoacetica ATCC
39073]
gi|83571937|gb|ABC18489.1| GreA/GreB family elongation factor [Moorella thermoacetica ATCC
39073]
Length=160
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/120 (30%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Query 43 IGDHGDAAEAIQRADELAILGDRINELDRRLRTGPTPWSGS---ETLPGGTEVTLR-FPD 98
GD + +E +E A + RI L+++LR + + + G+ VTL+ +
Sbjct 41 FGDISENSEYEDAKNEQAFIEGRILTLEKKLRNAKVIVASEVPDDVVSLGSRVTLKDLDE 100
Query 99 GEVVTMHVISVVEETPVGREAET-LTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAV 157
GE + ++ +E P AE ++ SP+G+AL GH G+TVT P G + Q+L +
Sbjct 101 GEEIQYEIVGSMEADP----AENRISNESPVGKALLGHHTGETVTIQVPAGNLRYQILNI 156
Lambda K H
0.312 0.132 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131112251088
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40