BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3789 Length=121 Score E Sequences producing significant alignments: (Bits) Value gi|289556056|ref|ZP_06445266.1| conserved membrane protein [Myco... 239 7e-62 gi|15843411|ref|NP_338448.1| hypothetical protein MT3897 [Mycoba... 239 8e-62 gi|15610925|ref|NP_218306.1| integral membrane protein [Mycobact... 239 1e-61 gi|340628759|ref|YP_004747211.1| putative integral membrane prot... 238 2e-61 gi|118466057|ref|YP_879526.1| membrane protein [Mycobacterium av... 219 8e-56 gi|296166915|ref|ZP_06849332.1| membrane protein [Mycobacterium ... 215 1e-54 gi|41406334|ref|NP_959170.1| hypothetical protein MAP0236c [Myco... 214 4e-54 gi|254822489|ref|ZP_05227490.1| hypothetical protein MintA_21321... 213 7e-54 gi|342860043|ref|ZP_08716695.1| membrane protein [Mycobacterium ... 211 4e-53 gi|240168560|ref|ZP_04747219.1| hypothetical protein MkanA1_0455... 205 1e-51 gi|183985319|ref|YP_001853610.1| hypothetical protein MMAR_5351 ... 200 7e-50 gi|118619989|ref|YP_908321.1| hypothetical protein MUL_4968 [Myc... 197 6e-49 gi|15826944|ref|NP_301207.1| hypothetical protein ML0110 [Mycoba... 181 4e-44 gi|169627298|ref|YP_001700947.1| hypothetical protein MAB_0193c ... 175 2e-42 gi|111021062|ref|YP_704034.1| hypothetical protein RHA1_ro04079 ... 169 1e-40 gi|226363364|ref|YP_002781146.1| hypothetical protein ROP_39540 ... 167 7e-40 gi|256856005|emb|CBB12350.1| hypothetical protein [Rhodococcus a... 163 6e-39 gi|118472347|ref|YP_890585.1| membrane protein [Mycobacterium sm... 163 7e-39 gi|120406568|ref|YP_956397.1| GtrA family protein [Mycobacterium... 163 9e-39 gi|145221771|ref|YP_001132449.1| GtrA family protein [Mycobacter... 162 1e-38 gi|333992727|ref|YP_004525341.1| hypothetical protein JDM601_408... 162 2e-38 gi|229492463|ref|ZP_04386266.1| GtrA family protein [Rhodococcus... 157 4e-37 gi|108801962|ref|YP_642159.1| GtrA-like protein [Mycobacterium s... 157 6e-37 gi|325675112|ref|ZP_08154798.1| membrane protein [Rhodococcus eq... 154 4e-36 gi|312137736|ref|YP_004005072.1| gtra-like protein [Rhodococcus ... 152 2e-35 gi|54022162|ref|YP_116404.1| hypothetical protein nfa1980 [Nocar... 143 6e-33 gi|226303725|ref|YP_002763683.1| hypothetical protein RER_02360 ... 141 3e-32 gi|62389092|ref|YP_224494.1| membrane protein [Corynebacterium g... 140 4e-32 gi|333917800|ref|YP_004491381.1| hypothetical protein AS9A_0121 ... 140 5e-32 gi|19551446|ref|NP_599448.1| hypothetical protein NCgl0192 [Cory... 140 5e-32 gi|21322959|dbj|BAB97588.1| Hypothetical membrane protein [Coryn... 140 6e-32 gi|145294319|ref|YP_001137140.1| hypothetical protein cgR_0274 [... 139 2e-31 gi|343926191|ref|ZP_08765700.1| hypothetical protein GOALK_056_0... 132 1e-29 gi|25026728|ref|NP_736782.1| hypothetical protein CE0172 [Coryne... 128 2e-28 gi|259508137|ref|ZP_05751037.1| membrane protein [Corynebacteriu... 128 3e-28 gi|262200296|ref|YP_003271504.1| GtrA family protein [Gordonia b... 125 2e-27 gi|172041629|ref|YP_001801343.1| hypothetical protein cur_1950 [... 124 4e-27 gi|326384279|ref|ZP_08205960.1| GtrA family protein [Gordonia ne... 124 6e-27 gi|319951483|ref|ZP_08025290.1| hypothetical protein ES5_17463 [... 122 2e-26 gi|334563944|ref|ZP_08516935.1| hypothetical protein CbovD2_0517... 120 7e-26 gi|237786593|ref|YP_002907298.1| hypothetical protein ckrop_2051... 118 3e-25 gi|68537140|ref|YP_251845.1| hypothetical protein jk2045 [Coryne... 118 3e-25 gi|260579497|ref|ZP_05847371.1| membrane protein [Corynebacteriu... 118 3e-25 gi|340795869|ref|YP_004761332.1| hypothetical protein CVAR_2918 ... 117 5e-25 gi|300857526|ref|YP_003782509.1| hypothetical protein cpfrc_0010... 117 6e-25 gi|337289769|ref|YP_004628790.1| hypothetical protein CULC22_001... 114 4e-24 gi|296141771|ref|YP_003649014.1| GtrA family protein [Tsukamurel... 114 7e-24 gi|336326660|ref|YP_004606626.1| hypothetical protein CRES_2109 ... 110 9e-23 gi|38232791|ref|NP_938558.1| hypothetical protein DIP0166 [Coryn... 109 2e-22 gi|257054224|ref|YP_003132056.1| hypothetical protein Svir_01410... 107 5e-22 >gi|289556056|ref|ZP_06445266.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605] gi|289440688|gb|EFD23181.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605] Length=128 Score = 239 bits (611), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 121/121 (100%), Positives = 121/121 (100%), Gaps = 0/121 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA Sbjct 8 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 67 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI Sbjct 68 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 127 Query 121 R 121 R Sbjct 128 R 128 >gi|15843411|ref|NP_338448.1| hypothetical protein MT3897 [Mycobacterium tuberculosis CDC1551] gi|253800837|ref|YP_003033839.1| hypothetical protein TBMG_03836 [Mycobacterium tuberculosis KZN 1435] gi|254233282|ref|ZP_04926608.1| hypothetical protein TBCG_03715 [Mycobacterium tuberculosis C] 31 more sequence titles Length=142 Score = 239 bits (611), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 121/121 (100%), Positives = 121/121 (100%), Gaps = 0/121 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA Sbjct 22 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 81 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI Sbjct 82 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 141 Query 121 R 121 R Sbjct 142 R 142 >gi|15610925|ref|NP_218306.1| integral membrane protein [Mycobacterium tuberculosis H37Rv] gi|31794962|ref|NP_857455.1| hypothetical protein Mb3818 [Mycobacterium bovis AF2122/97] gi|121639706|ref|YP_979930.1| hypothetical protein BCG_3851 [Mycobacterium bovis BCG str. Pasteur 1173P2] 44 more sequence titles Length=121 Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 121/121 (100%), Positives = 121/121 (100%), Gaps = 0/121 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA Sbjct 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI Sbjct 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 Query 121 R 121 R Sbjct 121 R 121 >gi|340628759|ref|YP_004747211.1| putative integral membrane protein [Mycobacterium canettii CIPT 140010059] gi|340006949|emb|CCC46140.1| putative conserved integral membrane protein [Mycobacterium canettii CIPT 140010059] Length=121 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 120/121 (99%), Positives = 121/121 (100%), Gaps = 0/121 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA Sbjct 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATV+NFIVQRAVIFRI Sbjct 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVVNFIVQRAVIFRI 120 Query 121 R 121 R Sbjct 121 R 121 >gi|118466057|ref|YP_879526.1| membrane protein [Mycobacterium avium 104] gi|254773291|ref|ZP_05214807.1| membrane protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118167344|gb|ABK68241.1| membrane protein [Mycobacterium avium 104] gi|336461587|gb|EGO40453.1| putative membrane protein [Mycobacterium avium subsp. paratuberculosis S397] Length=134 Score = 219 bits (559), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 108/121 (90%), Positives = 113/121 (94%), Gaps = 0/121 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 MRFVVTGGLAGIVDFGLY LYKV G+QVD++KAISFIVGTITAYLINRRWTFQA PSTA Sbjct 14 MRFVVTGGLAGIVDFGLYATLYKVVGVQVDVAKAISFIVGTITAYLINRRWTFQAAPSTA 73 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RFVAVM LY +TFAVQVGLNHLCLA LHYR WAIPVAFVIAQGTATVINF+VQRAVIFRI Sbjct 74 RFVAVMALYAVTFAVQVGLNHLCLAFLHYRGWAIPVAFVIAQGTATVINFVVQRAVIFRI 133 Query 121 R 121 R Sbjct 134 R 134 >gi|296166915|ref|ZP_06849332.1| membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897792|gb|EFG77381.1| membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=142 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 106/120 (89%), Positives = 114/120 (95%), Gaps = 0/120 (0%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RFVVTGGLAGIVDFGLY++LY+ G+QVDL+KA SF+VGTITAYLINRRWTFQA PSTAR Sbjct 23 RFVVTGGLAGIVDFGLYLLLYQAVGVQVDLAKATSFVVGTITAYLINRRWTFQAAPSTAR 82 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRIR 121 FVAVM+LYG+TFAVQVGLNHL LALLHYR WAIPVAFVIAQGTATVINFIVQRAVIFRIR Sbjct 83 FVAVMILYGVTFAVQVGLNHLSLALLHYRGWAIPVAFVIAQGTATVINFIVQRAVIFRIR 142 >gi|41406334|ref|NP_959170.1| hypothetical protein MAP0236c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394682|gb|AAS02553.1| hypothetical protein MAP_0236c [Mycobacterium avium subsp. paratuberculosis K-10] Length=121 Score = 214 bits (544), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 107/121 (89%), Positives = 112/121 (93%), Gaps = 0/121 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 MRFVVTGGLAGIVDFGLY LYKV G+QVD++KAISFIVGTITAYLINRRWTFQA PSTA Sbjct 1 MRFVVTGGLAGIVDFGLYATLYKVVGVQVDVAKAISFIVGTITAYLINRRWTFQAAPSTA 60 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RFVAVM LY +TFAVQVGLNHL LA LHYR WAIPVAFVIAQGTATVINF+VQRAVIFRI Sbjct 61 RFVAVMALYAVTFAVQVGLNHLWLAFLHYRGWAIPVAFVIAQGTATVINFVVQRAVIFRI 120 Query 121 R 121 R Sbjct 121 R 121 >gi|254822489|ref|ZP_05227490.1| hypothetical protein MintA_21321 [Mycobacterium intracellulare ATCC 13950] Length=140 Score = 213 bits (542), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 104/120 (87%), Positives = 114/120 (95%), Gaps = 0/120 (0%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RFVVTGGLAGIVDFGLY++L+K A +QVD++K+ISFIVGTITAYLINRRWTFQA PSTAR Sbjct 21 RFVVTGGLAGIVDFGLYLLLFKAAHVQVDVAKSISFIVGTITAYLINRRWTFQAPPSTAR 80 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRIR 121 FVAVM+LY ITFAVQVGLNHLCLA LHY+AWAIPVAFVIAQGTATVINF+VQRAVIFRI Sbjct 81 FVAVMVLYAITFAVQVGLNHLCLAFLHYQAWAIPVAFVIAQGTATVINFVVQRAVIFRIH 140 >gi|342860043|ref|ZP_08716695.1| membrane protein [Mycobacterium colombiense CECT 3035] gi|342132421|gb|EGT85650.1| membrane protein [Mycobacterium colombiense CECT 3035] Length=144 Score = 211 bits (536), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 105/120 (88%), Positives = 113/120 (95%), Gaps = 0/120 (0%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RFVVTGGLAGIVDFGLY++L+KV G+QVDLSKA SFIVGT+TAYLINRRWTFQA PSTAR Sbjct 25 RFVVTGGLAGIVDFGLYLLLWKVIGVQVDLSKATSFIVGTVTAYLINRRWTFQASPSTAR 84 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRIR 121 FVAVM+LY ITFAVQVGLNH+CLALLHYR WA VAFVIAQGTATVINF+VQRAVIFRIR Sbjct 85 FVAVMVLYAITFAVQVGLNHVCLALLHYRGWAPLVAFVIAQGTATVINFVVQRAVIFRIR 144 >gi|240168560|ref|ZP_04747219.1| hypothetical protein MkanA1_04557 [Mycobacterium kansasii ATCC 12478] Length=145 Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 103/121 (86%), Positives = 108/121 (90%), Gaps = 0/121 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RFVVTGG A IVDF +YV LYK GLQVDLSK IS +VGTITAYLINRRWTFQA PS A Sbjct 25 VRFVVTGGFAAIVDFSVYVALYKGVGLQVDLSKFISVVVGTITAYLINRRWTFQASPSRA 84 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RF AVM LYG+TFAVQVGLNHLCLALLHYR WAIPVAFVIAQGTATVINF+VQRAVIFRI Sbjct 85 RFAAVMGLYGVTFAVQVGLNHLCLALLHYRGWAIPVAFVIAQGTATVINFVVQRAVIFRI 144 Query 121 R 121 R Sbjct 145 R 145 >gi|183985319|ref|YP_001853610.1| hypothetical protein MMAR_5351 [Mycobacterium marinum M] gi|183178645|gb|ACC43755.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=146 Score = 200 bits (508), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 97/119 (82%), Positives = 106/119 (90%), Gaps = 0/119 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RF+VTGG A IVDF +YVVLYKV GLQVDLSK IS ++GTITAYLINRRWTFQA PS A Sbjct 26 IRFIVTGGFAAIVDFSVYVVLYKVVGLQVDLSKFISVVIGTITAYLINRRWTFQAAPSGA 85 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFR 119 RF AVM LYG+TFAVQVG+NHLCLAL+HYR WAIPVAFVIAQ ATVINF+VQRAVIFR Sbjct 86 RFAAVMALYGVTFAVQVGINHLCLALMHYRGWAIPVAFVIAQAVATVINFVVQRAVIFR 144 >gi|118619989|ref|YP_908321.1| hypothetical protein MUL_4968 [Mycobacterium ulcerans Agy99] gi|118572099|gb|ABL06850.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=146 Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 95/119 (80%), Positives = 105/119 (89%), Gaps = 0/119 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RF+VTGG A IVDF +YVVLYKV GLQVDLSK IS ++GTITAYLINRRWTFQA P A Sbjct 26 IRFIVTGGFAAIVDFSVYVVLYKVVGLQVDLSKFISVVIGTITAYLINRRWTFQAAPCGA 85 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFR 119 RF AVM LYG+TFAVQVG+NHLCLAL+HYR WAIPVAFVIAQ +TVINF+VQRAVIFR Sbjct 86 RFAAVMALYGVTFAVQVGINHLCLALMHYRGWAIPVAFVIAQAVSTVINFVVQRAVIFR 144 >gi|15826944|ref|NP_301207.1| hypothetical protein ML0110 [Mycobacterium leprae TN] gi|221229422|ref|YP_002502838.1| hypothetical protein MLBr_00110 [Mycobacterium leprae Br4923] gi|15214351|sp|Q9CDA3.1|Y110_MYCLE RecName: Full=Uncharacterized protein ML0110 gi|13092491|emb|CAC29618.1| possible membrane protein [Mycobacterium leprae] gi|219932529|emb|CAR70203.1| possible membrane protein [Mycobacterium leprae Br4923] Length=123 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 89/122 (73%), Positives = 101/122 (83%), Gaps = 1/122 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RF+VTG LA VDF +YV LY+ GLQVDL+K S ++GTIT+Y+INRRWTFQ PST Sbjct 2 LRFIVTGSLATAVDFSVYVTLYRGGGLQVDLAKFTSVVIGTITSYMINRRWTFQMSPSTT 61 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYR-AWAIPVAFVIAQGTATVINFIVQRAVIFR 119 RF AVM LYGITFAVQ+GLNHLCL L HY+ WAIP+AFVIAQG ATVINFIVQR VIFR Sbjct 62 RFAAVMALYGITFAVQMGLNHLCLFLFHYQEPWAIPIAFVIAQGLATVINFIVQRVVIFR 121 Query 120 IR 121 IR Sbjct 122 IR 123 >gi|169627298|ref|YP_001700947.1| hypothetical protein MAB_0193c [Mycobacterium abscessus ATCC 19977] gi|169239265|emb|CAM60293.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=137 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 87/120 (73%), Positives = 102/120 (85%), Gaps = 1/120 (0%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RFV+TGGL+ IVDFGLYV+ V GLQV+++K+ISF+ GT TAYLINRRWTFQAEPS AR Sbjct 19 RFVITGGLSAIVDFGLYVLFLHV-GLQVNVAKSISFVAGTTTAYLINRRWTFQAEPSRAR 77 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRIR 121 F+AVM LYG+T+AVQVG+N+L + W +PVAFVIAQGTATVINFIVQRAVIFRIR Sbjct 78 FIAVMALYGLTYAVQVGINYLFYMQFEDKPWRVPVAFVIAQGTATVINFIVQRAVIFRIR 137 >gi|111021062|ref|YP_704034.1| hypothetical protein RHA1_ro04079 [Rhodococcus jostii RHA1] gi|110820592|gb|ABG95876.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=178 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 83/121 (69%), Positives = 102/121 (85%), Gaps = 0/121 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RFV+TGGL+ IVDFGLYV+L++V GL V+++K+ISFI GT TAYLINRRWTF+AEPS A Sbjct 58 IRFVLTGGLSAIVDFGLYVLLFEVVGLPVNVAKSISFIAGTTTAYLINRRWTFKAEPSRA 117 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RFVAV++LY +TFAVQVGLN + W +P+AFVIAQGTATVINF+VQRAVIF+I Sbjct 118 RFVAVVILYAVTFAVQVGLNWVMYHAFPDEWWRLPLAFVIAQGTATVINFVVQRAVIFKI 177 Query 121 R 121 Sbjct 178 H 178 >gi|226363364|ref|YP_002781146.1| hypothetical protein ROP_39540 [Rhodococcus opacus B4] gi|226241853|dbj|BAH52201.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=143 Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 82/121 (68%), Positives = 101/121 (84%), Gaps = 0/121 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RFV+TGGL+ IVDFGLY +L++V GL V+++K+ISFI GT TAYLINRRWTF+AEPS A Sbjct 23 VRFVLTGGLSAIVDFGLYFLLFEVVGLPVNVAKSISFIAGTTTAYLINRRWTFKAEPSRA 82 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RFVAV++LY +TFAVQVGLN + W +P+AFVIAQGTATVINF+VQRAVIF+I Sbjct 83 RFVAVVILYAVTFAVQVGLNWVMYHAFPDEWWRLPLAFVIAQGTATVINFVVQRAVIFKI 142 Query 121 R 121 Sbjct 143 H 143 >gi|256856005|emb|CBB12350.1| hypothetical protein [Rhodococcus aetherivorans] Length=161 Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 80/121 (67%), Positives = 103/121 (86%), Gaps = 1/121 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RFV+TGGL+ IVDFGLYV+L V GL V+++K++SF+ GT TAYLINRRWTF+AEPS A Sbjct 42 VRFVLTGGLSAIVDFGLYVLLLAV-GLHVNVAKSLSFVAGTTTAYLINRRWTFRAEPSRA 100 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RFVAV++LY +T+AVQVG+N++ L W +P+AFV+AQGTATVINF+VQRAVIFR+ Sbjct 101 RFVAVVILYAVTYAVQVGINYVLYDALPAEWWRVPLAFVVAQGTATVINFVVQRAVIFRL 160 Query 121 R 121 R Sbjct 161 R 161 >gi|118472347|ref|YP_890585.1| membrane protein [Mycobacterium smegmatis str. MC2 155] gi|118173634|gb|ABK74530.1| membrane protein [Mycobacterium smegmatis str. MC2 155] Length=135 Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 81/120 (68%), Positives = 99/120 (83%), Gaps = 1/120 (0%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RF+VTGGL+ IVDFGLYV+L AGL V+++K +SF+ GT TAYLINRRWTFQA PS AR Sbjct 17 RFIVTGGLSAIVDFGLYVLLLA-AGLHVNVAKTLSFVAGTTTAYLINRRWTFQAPPSKAR 75 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRIR 121 F+AV +LY +T+AVQVG+N++ + W +PVAFVIAQGTATVINFIVQRAVIFR+R Sbjct 76 FIAVCVLYAVTYAVQVGINYVFYMAWDEKPWRVPVAFVIAQGTATVINFIVQRAVIFRLR 135 >gi|120406568|ref|YP_956397.1| GtrA family protein [Mycobacterium vanbaalenii PYR-1] gi|119959386|gb|ABM16391.1| GtrA family protein [Mycobacterium vanbaalenii PYR-1] Length=131 Score = 163 bits (412), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 81/120 (68%), Positives = 98/120 (82%), Gaps = 1/120 (0%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RFVVTGGL+ +VDFGLYV L AGL V+++K +SF+ GT TAYLINRRWTFQA PS AR Sbjct 13 RFVVTGGLSAVVDFGLYVALLA-AGLHVNIAKTLSFVAGTTTAYLINRRWTFQAAPSKAR 71 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRIR 121 F+AV+ LY +T+AVQVG+N++ + W +PVAFVIAQGTATVINFIVQRAVIFR+R Sbjct 72 FIAVVALYAVTYAVQVGINYVFYMEFEDQPWRVPVAFVIAQGTATVINFIVQRAVIFRLR 131 >gi|145221771|ref|YP_001132449.1| GtrA family protein [Mycobacterium gilvum PYR-GCK] gi|315446493|ref|YP_004079372.1| hypothetical protein Mspyr1_50080 [Mycobacterium sp. Spyr1] gi|145214257|gb|ABP43661.1| GtrA family protein [Mycobacterium gilvum PYR-GCK] gi|315264796|gb|ADU01538.1| predicted membrane protein [Mycobacterium sp. Spyr1] Length=133 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 82/118 (70%), Positives = 97/118 (83%), Gaps = 1/118 (0%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RF++TGGL+ IVDFGLYV L AGL V+++K ISFI GT TAYLINRRWTFQA PS AR Sbjct 13 RFLITGGLSAIVDFGLYVALLA-AGLHVNIAKTISFIAGTTTAYLINRRWTFQAPPSKAR 71 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFR 119 F+AV +LYG+T+AVQVG+N++ + W +PVAFVIAQGTATVINFIVQRAVIFR Sbjct 72 FIAVCVLYGLTYAVQVGINYVFYMEFDDKPWRVPVAFVIAQGTATVINFIVQRAVIFR 129 >gi|333992727|ref|YP_004525341.1| hypothetical protein JDM601_4087 [Mycobacterium sp. JDM601] gi|333488695|gb|AEF38087.1| integral membrane protein [Mycobacterium sp. JDM601] Length=137 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/120 (74%), Positives = 102/120 (85%), Gaps = 0/120 (0%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RF+VTG L+ +VDFGLY++LY AGL VD +KAISF+ GT+TAYLINRRWTFQ+ T R Sbjct 18 RFLVTGALSAVVDFGLYLLLYLGAGLGVDAAKAISFVAGTVTAYLINRRWTFQSSAHTGR 77 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRIR 121 FVAVM+LY +TF VQVGLNHL L LL Y+ WA+PVAFVIAQGTATVINFIVQR VIFR+R Sbjct 78 FVAVMVLYALTFGVQVGLNHLVLRLLDYQHWALPVAFVIAQGTATVINFIVQRTVIFRVR 137 >gi|229492463|ref|ZP_04386266.1| GtrA family protein [Rhodococcus erythropolis SK121] gi|229320449|gb|EEN86267.1| GtrA family protein [Rhodococcus erythropolis SK121] Length=157 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 78/121 (65%), Positives = 98/121 (81%), Gaps = 1/121 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RFV TGGL+ +VD+GLYV+L+ + GL +K++SF+ GT TAYLINRRWTF+AEPS A Sbjct 38 VRFVATGGLSAVVDYGLYVLLFAL-GLPRVAAKSLSFVAGTTTAYLINRRWTFKAEPSRA 96 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RF+AV+ LY +TFAVQVGLN L + + W P+AFVIAQGTATVINFIVQRAVIF+I Sbjct 97 RFIAVVALYAVTFAVQVGLNELMVHVFDEHWWRTPLAFVIAQGTATVINFIVQRAVIFKI 156 Query 121 R 121 + Sbjct 157 K 157 >gi|108801962|ref|YP_642159.1| GtrA-like protein [Mycobacterium sp. MCS] gi|119871114|ref|YP_941066.1| GtrA family protein [Mycobacterium sp. KMS] gi|126437943|ref|YP_001073634.1| GtrA family protein [Mycobacterium sp. JLS] gi|108772381|gb|ABG11103.1| GtrA-like protein [Mycobacterium sp. MCS] gi|119697203|gb|ABL94276.1| GtrA family protein [Mycobacterium sp. KMS] gi|126237743|gb|ABO01144.1| GtrA family protein [Mycobacterium sp. JLS] Length=139 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 79/118 (67%), Positives = 95/118 (81%), Gaps = 1/118 (0%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RF++TGG A IVDFGLYV+L + AGL V+++K ISFI GT TAYLINRRWTFQA PS AR Sbjct 13 RFLLTGGFAAIVDFGLYVLLLE-AGLHVNVAKTISFIAGTTTAYLINRRWTFQAPPSRAR 71 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFR 119 F+AV LY T+A QVG+N++ ++W +PVAFVIAQGTATVINF+VQRAVIFR Sbjct 72 FLAVCALYATTYAAQVGINYILYTAWDDKSWRVPVAFVIAQGTATVINFVVQRAVIFR 129 >gi|325675112|ref|ZP_08154798.1| membrane protein [Rhodococcus equi ATCC 33707] gi|325554073|gb|EGD23749.1| membrane protein [Rhodococcus equi ATCC 33707] Length=155 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 85/121 (71%), Positives = 102/121 (85%), Gaps = 1/121 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RFV+TGGL+ +VDFGLY++L V L ++L+KAISFI GT TAYLINRRWTF+AEPS A Sbjct 36 VRFVLTGGLSAVVDFGLYLLLLAVG-LPLNLAKAISFIAGTTTAYLINRRWTFKAEPSRA 94 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RFVAV++LYG+TFAVQVGLN L + W IP+AFVIAQGTATVINF+VQRAVIF+I Sbjct 95 RFVAVVVLYGLTFAVQVGLNGLMAHVFPDEWWRIPLAFVIAQGTATVINFVVQRAVIFKI 154 Query 121 R 121 R Sbjct 155 R 155 >gi|312137736|ref|YP_004005072.1| gtra-like protein [Rhodococcus equi 103S] gi|311887075|emb|CBH46384.1| putative GtrA-like protein [Rhodococcus equi 103S] Length=155 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/121 (70%), Positives = 101/121 (84%), Gaps = 1/121 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RFV+TGGL+ +VDFGLY++L V L ++L+KAISFI GT TAYLINRRWTF+AEPS A Sbjct 36 VRFVLTGGLSAVVDFGLYLLLLAVG-LPLNLAKAISFIAGTTTAYLINRRWTFKAEPSRA 94 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RFVAV++LY +TFAVQVGLN L + W IP+AFVIAQGTATVINF+VQRAVIF+I Sbjct 95 RFVAVVVLYALTFAVQVGLNGLMAHVFPDEWWRIPLAFVIAQGTATVINFVVQRAVIFKI 154 Query 121 R 121 R Sbjct 155 R 155 >gi|54022162|ref|YP_116404.1| hypothetical protein nfa1980 [Nocardia farcinica IFM 10152] gi|54013670|dbj|BAD55040.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=154 Score = 143 bits (361), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 79/120 (66%), Positives = 93/120 (78%), Gaps = 0/120 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RF VTGG + IVDFGLYV L KV GL V ++K+I F+ GT TAYLINRRWTFQA PS A Sbjct 34 IRFTVTGGFSAIVDFGLYVFLLKVVGLPVPVAKSIGFVAGTTTAYLINRRWTFQAPPSRA 93 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RF+AV+ LY TFAVQVG+N L + LL + VAFV+AQGTATVINF+VQR VIF+I Sbjct 94 RFLAVVALYATTFAVQVGINQLMVHLLGEDPVPVAVAFVVAQGTATVINFVVQRLVIFKI 153 >gi|226303725|ref|YP_002763683.1| hypothetical protein RER_02360 [Rhodococcus erythropolis PR4] gi|226182840|dbj|BAH30944.1| hypothetical membrane protein [Rhodococcus erythropolis PR4] Length=127 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 77/121 (64%), Positives = 97/121 (81%), Gaps = 1/121 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RFV TGGL+ +VD+GLYV+L + +V +K++SF+ GT TAYLINRRWTF+AEPS A Sbjct 8 VRFVATGGLSAVVDYGLYVLLLALGLPRV-AAKSLSFVAGTTTAYLINRRWTFKAEPSRA 66 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RF+AV+ LY +TFAVQVGLN L + + W P+AFVIAQGTATVINFIVQRAVIF+I Sbjct 67 RFIAVVALYAVTFAVQVGLNELMVHVFDEHWWRTPLAFVIAQGTATVINFIVQRAVIFKI 126 Query 121 R 121 + Sbjct 127 K 127 >gi|62389092|ref|YP_224494.1| membrane protein [Corynebacterium glutamicum ATCC 13032] gi|41324425|emb|CAF18765.1| membrane protein [Corynebacterium glutamicum ATCC 13032] Length=148 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 75/124 (61%), Positives = 93/124 (75%), Gaps = 4/124 (3%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RF++TGGL+ IVD GL +L V GL V +++ ISFI GT TAY+INRRWTFQAE ST+R Sbjct 25 RFILTGGLSAIVDLGLLSLLQLVFGLPVPVARTISFIAGTTTAYMINRRWTFQAESSTSR 84 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLHYRAW----AIPVAFVIAQGTATVINFIVQRAVI 117 F+AV+ LYG+TF + +GL LC AL W A+ VAFVIAQGT TVINFIVQR +I Sbjct 85 FLAVVALYGVTFLINIGLQTLCSALFENWGWNEAVAMVVAFVIAQGTGTVINFIVQRTII 144 Query 118 FRIR 121 FR++ Sbjct 145 FRVK 148 >gi|333917800|ref|YP_004491381.1| hypothetical protein AS9A_0121 [Amycolicicoccus subflavus DQS3-9A1] gi|333480021|gb|AEF38581.1| hypothetical protein AS9A_0121 [Amycolicicoccus subflavus DQS3-9A1] Length=155 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 79/124 (64%), Positives = 95/124 (77%), Gaps = 8/124 (6%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RF VTGGL+ IVDFG + + GL L+K+ISFI+GT TAY+INRRWTF+A S A Sbjct 35 IRFGVTGGLSAIVDFGSLLAFLGL-GLPFWLAKSISFILGTTTAYMINRRWTFKAPHSNA 93 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRA----WAIPVAFVIAQGTATVINFIVQRAV 116 RFVAV+ LYG+TFA+QVG++ AL HY W +PVAFVIAQGTATVINFIVQRAV Sbjct 94 RFVAVIALYGVTFALQVGIS---TALYHYFPEDALWRVPVAFVIAQGTATVINFIVQRAV 150 Query 117 IFRI 120 IF+I Sbjct 151 IFKI 154 >gi|19551446|ref|NP_599448.1| hypothetical protein NCgl0192 [Corynebacterium glutamicum ATCC 13032] Length=144 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 75/124 (61%), Positives = 93/124 (75%), Gaps = 4/124 (3%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RF++TGGL+ IVD GL +L V GL V +++ ISFI GT TAY+INRRWTFQAE ST+R Sbjct 21 RFILTGGLSAIVDLGLLSLLQLVFGLPVPVARTISFIAGTTTAYMINRRWTFQAESSTSR 80 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLHYRAW----AIPVAFVIAQGTATVINFIVQRAVI 117 F+AV+ LYG+TF + +GL LC AL W A+ VAFVIAQGT TVINFIVQR +I Sbjct 81 FLAVVALYGVTFLINIGLQTLCSALFENWGWNEAVAMVVAFVIAQGTGTVINFIVQRTII 140 Query 118 FRIR 121 FR++ Sbjct 141 FRVK 144 >gi|21322959|dbj|BAB97588.1| Hypothetical membrane protein [Corynebacterium glutamicum ATCC 13032] Length=132 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 75/124 (61%), Positives = 93/124 (75%), Gaps = 4/124 (3%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RF++TGGL+ IVD GL +L V GL V +++ ISFI GT TAY+INRRWTFQAE ST+R Sbjct 9 RFILTGGLSAIVDLGLLSLLQLVFGLPVPVARTISFIAGTTTAYMINRRWTFQAESSTSR 68 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLHYRAW----AIPVAFVIAQGTATVINFIVQRAVI 117 F+AV+ LYG+TF + +GL LC AL W A+ VAFVIAQGT TVINFIVQR +I Sbjct 69 FLAVVALYGVTFLINIGLQTLCSALFENWGWNEAVAMVVAFVIAQGTGTVINFIVQRTII 128 Query 118 FRIR 121 FR++ Sbjct 129 FRVK 132 >gi|145294319|ref|YP_001137140.1| hypothetical protein cgR_0274 [Corynebacterium glutamicum R] gi|140844239|dbj|BAF53238.1| hypothetical protein [Corynebacterium glutamicum R] gi|344044010|gb|EGV39692.1| hypothetical protein CgS9114_11911 [Corynebacterium glutamicum S9114] Length=144 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/124 (60%), Positives = 92/124 (75%), Gaps = 4/124 (3%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RF++TGGL+ IVD GL +L V GL V +++ ISFI GT TAY+INRRWTFQAE ST+R Sbjct 21 RFILTGGLSAIVDLGLLSLLQLVFGLPVPVARTISFIAGTTTAYMINRRWTFQAESSTSR 80 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLHYRAW----AIPVAFVIAQGTATVINFIVQRAVI 117 F+AV+ LYG+TF + +GL LC AL W A+ AFVIAQGT TVINFIVQR +I Sbjct 81 FLAVVALYGVTFLINIGLQTLCSALFENWGWNEAVAMVCAFVIAQGTGTVINFIVQRTII 140 Query 118 FRIR 121 FR++ Sbjct 141 FRVK 144 >gi|343926191|ref|ZP_08765700.1| hypothetical protein GOALK_056_00590 [Gordonia alkanivorans NBRC 16433] gi|343763820|dbj|GAA12626.1| hypothetical protein GOALK_056_00590 [Gordonia alkanivorans NBRC 16433] Length=143 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/121 (60%), Positives = 88/121 (73%), Gaps = 0/121 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RFVVTG + ++DFGL + L + G ++KA FI+GT AYLINRRWTF+AEPS A Sbjct 23 IRFVVTGAGSAVLDFGLTLFLQYIVGTPDWVAKAFGFILGTTVAYLINRRWTFRAEPSAA 82 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RF AV+LLY +TFAV VGL +L A +AFVIAQGTATVINF+VQRAVIF+I Sbjct 83 RFTAVVLLYLVTFAVNVGLYSWLSSLWDKTALYSAIAFVIAQGTATVINFVVQRAVIFKI 142 Query 121 R 121 R Sbjct 143 R 143 >gi|25026728|ref|NP_736782.1| hypothetical protein CE0172 [Corynebacterium efficiens YS-314] gi|23492007|dbj|BAC16982.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length=159 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 69/122 (57%), Positives = 84/122 (69%), Gaps = 4/122 (3%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RF++TGG++ +VD GL + V G V +++ ISFI GT TAY+INRRWTFQAE ST R Sbjct 38 RFIITGGISAVVDLGLLALFQLVFGFPVPVARTISFIAGTTTAYMINRRWTFQAEKSTGR 97 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLHYRAW----AIPVAFVIAQGTATVINFIVQRAVI 117 F+AV+ LY TF V VGL L AL W A+ VAF+IAQGT T INFIVQR VI Sbjct 98 FLAVVALYAATFLVNVGLQTLFDALFTSWDWPASVALVVAFIIAQGTGTTINFIVQRMVI 157 Query 118 FR 119 F+ Sbjct 158 FK 159 >gi|259508137|ref|ZP_05751037.1| membrane protein [Corynebacterium efficiens YS-314] gi|259164226|gb|EEW48780.1| membrane protein [Corynebacterium efficiens YS-314] Length=130 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 69/122 (57%), Positives = 84/122 (69%), Gaps = 4/122 (3%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RF++TGG++ +VD GL + V G V +++ ISFI GT TAY+INRRWTFQAE ST R Sbjct 9 RFIITGGISAVVDLGLLALFQLVFGFPVPVARTISFIAGTTTAYMINRRWTFQAEKSTGR 68 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLHYRAW----AIPVAFVIAQGTATVINFIVQRAVI 117 F+AV+ LY TF V VGL L AL W A+ VAF+IAQGT T INFIVQR VI Sbjct 69 FLAVVALYAATFLVNVGLQTLFDALFTSWDWPASVALVVAFIIAQGTGTTINFIVQRMVI 128 Query 118 FR 119 F+ Sbjct 129 FK 130 >gi|262200296|ref|YP_003271504.1| GtrA family protein [Gordonia bronchialis DSM 43247] gi|262083643|gb|ACY19611.1| GtrA family protein [Gordonia bronchialis DSM 43247] Length=170 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 69/126 (55%), Positives = 90/126 (72%), Gaps = 10/126 (7%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RF++TG +G++DFGL ++L V G ++K+ FI+GT TAYL+NRRWTF+A PST Sbjct 50 IRFIITGAGSGVLDFGLTILLQYVVGADFWIAKSFGFILGTTTAYLLNRRWTFEAPPSTV 109 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIP-----VAFVIAQGTATVINFIVQRA 115 RF+AV+ LY +TF V VG L L H AW + +A+VIAQGTATVINF+VQR Sbjct 110 RFLAVVALYAVTFFVNVG---LYTVLSH--AWPVTLIYSFIAYVIAQGTATVINFVVQRL 164 Query 116 VIFRIR 121 VIFRIR Sbjct 165 VIFRIR 170 >gi|172041629|ref|YP_001801343.1| hypothetical protein cur_1950 [Corynebacterium urealyticum DSM 7109] gi|171852933|emb|CAQ05909.1| putative membrane protein [Corynebacterium urealyticum DSM 7109] Length=194 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 66/124 (54%), Positives = 85/124 (69%), Gaps = 6/124 (4%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RF++TGGL+ IVDFG + + G ++K I FI+GT+TAY+INRRWTF A PST R Sbjct 70 RFILTGGLSAIVDFGSTAIFTFLFGFSDTVAKTIGFILGTLTAYMINRRWTFNAAPSTKR 129 Query 62 FVAVMLLYGITFAVQVGL-NHLCLALLHYRAWAIP-----VAFVIAQGTATVINFIVQRA 115 FV M+ Y +TF VQVGL L + LL + P ++FVIAQGTATV+NF++QR Sbjct 130 FVITMITYALTFVVQVGLYKPLLIPLLESQTAFSPLVVRLISFVIAQGTATVLNFLIQRF 189 Query 116 VIFR 119 VIFR Sbjct 190 VIFR 193 >gi|326384279|ref|ZP_08205960.1| GtrA family protein [Gordonia neofelifaecis NRRL B-59395] gi|326196877|gb|EGD54070.1| GtrA family protein [Gordonia neofelifaecis NRRL B-59395] Length=166 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 65/121 (54%), Positives = 85/121 (71%), Gaps = 0/121 (0%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RF+ TG L+ + DF L +L + G L+K FI+GT AYLINRRWTF+AEPSTA Sbjct 46 IRFIATGALSAVFDFSLTYLLQEAFGAPFWLAKGCGFILGTTIAYLINRRWTFRAEPSTA 105 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIFRI 120 RF+AV+ LY +TF V +GL + + +A+ +AF IAQG ATVINF+VQRAVIF+I Sbjct 106 RFIAVVALYFVTFFVNIGLYNWLMHRWGTELFAVALAFCIAQGVATVINFVVQRAVIFKI 165 Query 121 R 121 R Sbjct 166 R 166 >gi|319951483|ref|ZP_08025290.1| hypothetical protein ES5_17463 [Dietzia cinnamea P4] gi|319434852|gb|EFV90165.1| hypothetical protein ES5_17463 [Dietzia cinnamea P4] Length=182 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/124 (55%), Positives = 87/124 (71%), Gaps = 5/124 (4%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RF +TG L+ +VD+GL +L +AG+ +KA+SF+ GT+TAY INRRWTF+AEPS AR Sbjct 60 RFFLTGVLSAVVDYGLLQLLM-LAGVGYGPAKALSFVAGTLTAYGINRRWTFRAEPSRAR 118 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLH---YRA-WAIPVAFVIAQGTATVINFIVQRAVI 117 F+A M LY + F VQ GL + + H +R WA + +VIAQG ATV NFIVQR VI Sbjct 119 FIATMCLYALMFGVQWGLFMVLVPFFHGLDWRTFWATTIGYVIAQGVATVTNFIVQRTVI 178 Query 118 FRIR 121 FR+R Sbjct 179 FRVR 182 >gi|334563944|ref|ZP_08516935.1| hypothetical protein CbovD2_05172 [Corynebacterium bovis DSM 20582] Length=156 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 64/123 (53%), Positives = 86/123 (70%), Gaps = 5/123 (4%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RF++ GG + +VDFG ++L+ + G+ +SKA+ FI+GT+TAYLINRRWTF+AEPS Sbjct 34 VRFIIVGGFSAVVDFGSTILLHHL-GVGDGVSKAVGFILGTLTAYLINRRWTFRAEPSVR 92 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRA----WAIPVAFVIAQGTATVINFIVQRAV 116 RF+ M Y +TF VQ GL + + L W V+FVIAQGTATV+NFI+QR V Sbjct 93 RFLVTMATYLLTFVVQWGLYQVSIPWLEGHGLGDFWVRAVSFVIAQGTATVLNFIIQRWV 152 Query 117 IFR 119 IFR Sbjct 153 IFR 155 >gi|237786593|ref|YP_002907298.1| hypothetical protein ckrop_2051 [Corynebacterium kroppenstedtii DSM 44385] gi|237759505|gb|ACR18755.1| putative membrane protein [Corynebacterium kroppenstedtii DSM 44385] Length=203 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 62/124 (50%), Positives = 81/124 (66%), Gaps = 4/124 (3%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 +FV+ GG++ +VD+GL +++ G L+KAI FI GTITAY+INRRWTF+AEPS + Sbjct 80 KFVIAGGISAVVDYGLTMIIQHAFGQSYPLAKAIGFIFGTITAYIINRRWTFEAEPSAKK 139 Query 62 FVAVMLLYGITFAVQVGL----NHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVI 117 F+ M LY + FAVQ GL NHL L A V +VI QG AT +NF+VQR VI Sbjct 140 FLQTMSLYALMFAVQWGLAVSVNHLLLNAGASAFIAGTVGYVIGQGVATAVNFVVQRWVI 199 Query 118 FRIR 121 F+ Sbjct 200 FKTN 203 >gi|68537140|ref|YP_251845.1| hypothetical protein jk2045 [Corynebacterium jeikeium K411] gi|68264739|emb|CAI38227.1| putative membrane protein [Corynebacterium jeikeium K411] Length=210 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 61/123 (50%), Positives = 83/123 (68%), Gaps = 4/123 (3%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 ++FV+ GG + IVDFG + GL ++KA+ F++GT+TAY INRRWTFQAEPS Sbjct 87 VKFVLVGGFSAIVDFGSTALFTFAFGLSDGVAKALGFVLGTLTAYFINRRWTFQAEPSGR 146 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLH----YRAWAIPVAFVIAQGTATVINFIVQRAV 116 RFV M YG+TFAVQ GL + + L W ++FVIAQGTATV+NF++Q+ + Sbjct 147 RFVITMATYGLTFAVQWGLYKVSIPWLEGFDLNAFWVRAISFVIAQGTATVLNFLIQKFL 206 Query 117 IFR 119 IF+ Sbjct 207 IFK 209 >gi|260579497|ref|ZP_05847371.1| membrane protein [Corynebacterium jeikeium ATCC 43734] gi|258602383|gb|EEW15686.1| membrane protein [Corynebacterium jeikeium ATCC 43734] Length=212 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 61/123 (50%), Positives = 83/123 (68%), Gaps = 4/123 (3%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 ++FV+ GG + IVDFG + GL ++KA+ F++GT+TAY INRRWTFQAEPS Sbjct 89 VKFVLVGGFSAIVDFGSTALFTFAFGLSDGVAKALGFVLGTLTAYFINRRWTFQAEPSGR 148 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLH----YRAWAIPVAFVIAQGTATVINFIVQRAV 116 RFV M YG+TFAVQ GL + + L W ++FVIAQGTATV+NF++Q+ + Sbjct 149 RFVITMATYGLTFAVQWGLYKVSIPWLEGFDLNAFWVRAISFVIAQGTATVLNFLIQKFL 208 Query 117 IFR 119 IF+ Sbjct 209 IFK 211 >gi|340795869|ref|YP_004761332.1| hypothetical protein CVAR_2918 [Corynebacterium variabile DSM 44702] gi|340535779|gb|AEK38259.1| putative membrane protein [Corynebacterium variabile DSM 44702] Length=135 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 64/123 (53%), Positives = 81/123 (66%), Gaps = 5/123 (4%) Query 2 RFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTAR 61 RF+ TG + +VDFG L + GL SK + FI+GT+TAY INRRWTFQA PS R Sbjct 13 RFICTGVVGAVVDFG-STYLLSLVGLSHAGSKTVGFILGTLTAYFINRRWTFQAAPSRKR 71 Query 62 FVAVMLLYGITFAVQVGLNHLCLALLHYRA----WAIPVAFVIAQGTATVINFIVQRAVI 117 FVA M Y +T+ VQ+GL +C+ L W ++FVIAQGTATV+NFI+QR VI Sbjct 72 FVATMCSYLLTYLVQLGLFLVCIPWLEDHGFSDFWTQAISFVIAQGTATVLNFIIQRWVI 131 Query 118 FRI 120 FR+ Sbjct 132 FRV 134 >gi|300857526|ref|YP_003782509.1| hypothetical protein cpfrc_00109 [Corynebacterium pseudotuberculosis FRC41] gi|300684980|gb|ADK27902.1| putative membrane protein [Corynebacterium pseudotuberculosis FRC41] gi|302205264|gb|ADL09606.1| GtrA-like integral membrane protein [Corynebacterium pseudotuberculosis C231] gi|302329820|gb|ADL20014.1| GtrA-like integral membrane protein [Corynebacterium pseudotuberculosis 1002] gi|308275505|gb|ADO25404.1| Putative membrane protein [Corynebacterium pseudotuberculosis I19] gi|341823935|gb|AEK91456.1| GtrA-like integral membrane protein [Corynebacterium pseudotuberculosis PAT10] Length=152 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 65/123 (53%), Positives = 84/123 (69%), Gaps = 4/123 (3%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 ++F+++GG++ +VD GL + V G + I FI GTITAYLINRRWTFQAE ST Sbjct 30 IKFIISGGISAVVDLGLTYLCQIVFGFSAAGGRTIGFIFGTITAYLINRRWTFQAEASTK 89 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALL-HY---RAWAIPVAFVIAQGTATVINFIVQRAV 116 RF+ V +LY IT+ V VG + L +LL HY A+ +AFVI+QGTATVINF VQR Sbjct 90 RFLQVAVLYTITYFVNVGGHSLLFSLLTHYGVSEQIALVIAFVISQGTATVINFFVQRIF 149 Query 117 IFR 119 IF+ Sbjct 150 IFK 152 >gi|337289769|ref|YP_004628790.1| hypothetical protein CULC22_00153 [Corynebacterium ulcerans BR-AD22] gi|334695898|gb|AEG80695.1| putative membrane protein [Corynebacterium ulcerans 809] gi|334698075|gb|AEG82871.1| putative membrane protein [Corynebacterium ulcerans BR-AD22] Length=137 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 64/123 (53%), Positives = 83/123 (68%), Gaps = 4/123 (3%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 ++F+++GG++ +VD GL + V G + I FI GTITAYLINRRWTFQAE ST Sbjct 15 IKFIISGGISAVVDLGLTYLCQIVFGFSAAGGRTIGFIFGTITAYLINRRWTFQAEASTK 74 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALL-HY---RAWAIPVAFVIAQGTATVINFIVQRAV 116 RF+ V LY IT+ V VG + L +L+ HY A+ +AFVI+QGTATVINF VQR Sbjct 75 RFLQVAALYTITYFVNVGGHALLFSLMTHYGLSERIALVIAFVISQGTATVINFFVQRIF 134 Query 117 IFR 119 IF+ Sbjct 135 IFK 137 >gi|296141771|ref|YP_003649014.1| GtrA family protein [Tsukamurella paurometabola DSM 20162] gi|296029905|gb|ADG80675.1| GtrA family protein [Tsukamurella paurometabola DSM 20162] Length=146 Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 67/127 (53%), Positives = 83/127 (66%), Gaps = 7/127 (5%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RFV+TG + +VDFG+ ++L G +K I FI GT TAYL+NRRWTF+AEPST Sbjct 19 IRFVLTGAFSAVVDFGITLILTMGFGASDFTAKTIGFICGTTTAYLLNRRWTFKAEPSTK 78 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYR------AWAI-PVAFVIAQGTATVINFIVQ 113 R AV LY + VQ GL LAL ++AI +AFVIAQGTATV+NFIVQ Sbjct 79 RLAAVWALYVTMYGVQTGLYLGILALFPPSDDGGAGSYAIRALAFVIAQGTATVVNFIVQ 138 Query 114 RAVIFRI 120 R VIFR+ Sbjct 139 RTVIFRL 145 >gi|336326660|ref|YP_004606626.1| hypothetical protein CRES_2109 [Corynebacterium resistens DSM 45100] gi|336102642|gb|AEI10462.1| putative membrane protein [Corynebacterium resistens DSM 45100] Length=128 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 58/119 (49%), Positives = 76/119 (64%), Gaps = 4/119 (3%) Query 7 GGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTARFVAVM 66 GG + IVD G + L + +LSK I FI GT+TAYLINRRWTF A PS RFV M Sbjct 2 GGFSAIVDLGSTLFLRFAFEMSDNLSKTIGFIFGTLTAYLINRRWTFNAAPSKRRFVITM 61 Query 67 LLYGITFAVQVGLNHLCLALLH----YRAWAIPVAFVIAQGTATVINFIVQRAVIFRIR 121 + YG+T+ VQ+GL + + L W +FVIAQG AT++NF++QR +IFR+R Sbjct 62 IAYGLTYLVQIGLYKVGIPWLEGFGLNDFWVRVFSFVIAQGAATILNFLIQRFIIFRVR 120 >gi|38232791|ref|NP_938558.1| hypothetical protein DIP0166 [Corynebacterium diphtheriae NCTC 13129] gi|38199049|emb|CAE48669.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length=139 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/123 (49%), Positives = 79/123 (65%), Gaps = 4/123 (3%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQAEPSTA 60 +RF+++GG++ +VD GL + + G + I FI GT+TAYLINRRWTFQAE ST Sbjct 17 IRFIISGGISAVVDLGLTYICQILFGFSAAGGRTIGFIFGTLTAYLINRRWTFQAEASTK 76 Query 61 RFVAVMLLYGITFAVQVGLNHLCLALLHYRAW----AIPVAFVIAQGTATVINFIVQRAV 116 RF+ V +LY IT+ V VG + L L A+ +AFVI+QG ATVINF VQR Sbjct 77 RFIQVAVLYTITYFVNVGGHALLFGLFTSSGLGDRVALVIAFVISQGVATVINFFVQRWF 136 Query 117 IFR 119 IF+ Sbjct 137 IFK 139 >gi|257054224|ref|YP_003132056.1| hypothetical protein Svir_01410 [Saccharomonospora viridis DSM 43017] gi|256584096|gb|ACU95229.1| predicted membrane protein [Saccharomonospora viridis DSM 43017] Length=150 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 63/121 (53%), Positives = 80/121 (67%), Gaps = 3/121 (2%) Query 1 MRFVVTGGLAGIVDFGLYVVLYKVAGLQVDLSKAISFIVGTITAYLINRRWTFQA--EPS 58 +RFV+ GG +VD GLY +L + AG V L+KAISFI GT TAY +NRR+TF A + Sbjct 27 LRFVLIGGFCALVDSGLYWLLLQ-AGAWVHLAKAISFIAGTTTAYFLNRRFTFTAAQKGG 85 Query 59 TARFVAVMLLYGITFAVQVGLNHLCLALLHYRAWAIPVAFVIAQGTATVINFIVQRAVIF 118 + MLLY +TF V VG N L L LL W I +A++IAQGTAT INFI+ + V+F Sbjct 86 AGQLGGFMLLYTVTFFVNVGTNALALHLLPELGWRIALAWIIAQGTATTINFIMLKWVVF 145 Query 119 R 119 R Sbjct 146 R 146 Lambda K H 0.335 0.145 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 128028430332 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40