BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3812 Length=504 Score E Sequences producing significant alignments: (Bits) Value gi|15843435|ref|NP_338472.1| PE_PGRS family protein [Mycobacteri... 979 0.0 gi|289441249|ref|ZP_06430993.1| PE-PGRS family protein [Mycobact... 977 0.0 gi|289572464|ref|ZP_06452691.1| PE-PGRS family protein [Mycobact... 976 0.0 gi|306805662|ref|ZP_07442330.1| PE-PGRS family protein [Mycobact... 975 0.0 gi|340628781|ref|YP_004747233.1| PE-PGRS family protein [Mycobac... 966 0.0 gi|289748341|ref|ZP_06507719.1| PE-PGRS family protein [Mycobact... 810 0.0 gi|167969925|ref|ZP_02552202.1| PE-PGRS family protein [Mycobact... 639 0.0 gi|289759979|ref|ZP_06519357.1| predicted protein [Mycobacterium... 509 5e-142 gi|118617278|ref|YP_905610.1| PE-PGRS family protein [Mycobacter... 274 3e-71 gi|183982474|ref|YP_001850765.1| PE-PGRS family protein [Mycobac... 272 1e-70 gi|240173029|ref|ZP_04751687.1| PE-PGRS family protein [Mycobact... 270 5e-70 gi|183982472|ref|YP_001850763.1| PE-PGRS family protein [Mycobac... 208 1e-51 gi|183983477|ref|YP_001851768.1| PE-PGRS family protein [Mycobac... 194 3e-47 gi|183983550|ref|YP_001851841.1| PE-PGRS family protein [Mycobac... 161 2e-37 gi|183982473|ref|YP_001850764.1| PE-PGRS family protein [Mycobac... 130 7e-28 gi|118617277|ref|YP_905609.1| PE-PGRS family protein [Mycobacter... 128 2e-27 gi|308370784|ref|ZP_07422704.2| PE-PGRS family protein [Mycobact... 127 4e-27 gi|308231897|ref|ZP_07414174.2| hypothetical protein TMAG_01484 ... 127 4e-27 gi|15841107|ref|NP_336144.1| PE_PGRS family protein [Mycobacteri... 125 2e-26 gi|339631707|ref|YP_004723349.1| PE-PGRS family protein [Mycobac... 125 2e-26 gi|340626657|ref|YP_004745109.1| PE-PGRS family protein [Mycobac... 125 2e-26 gi|339298242|gb|AEJ50352.1| PE-PGRS family protein [Mycobacteriu... 125 2e-26 gi|253799309|ref|YP_003032310.1| PE-PGRS family protein [Mycobac... 125 2e-26 gi|31792838|ref|NP_855331.1| PE-PGRS family protein [Mycobacteri... 125 2e-26 gi|57116897|ref|YP_177826.1| PE-PGRS family protein [Mycobacteri... 125 2e-26 gi|240170011|ref|ZP_04748670.1| PE-PGRS family protein [Mycobact... 124 3e-26 gi|306788751|ref|ZP_07427073.1| LOW QUALITY PROTEIN: hypothetica... 122 1e-25 gi|306967746|ref|ZP_07480407.1| hypothetical protein TMIG_01902 ... 122 1e-25 gi|294996600|ref|ZP_06802291.1| PE-PGRS family protein [Mycobact... 122 1e-25 gi|167968395|ref|ZP_02550672.1| PE-PGRS family protein [Mycobact... 122 1e-25 gi|289574320|ref|ZP_06454547.1| PE-PGRS family protein [Mycobact... 122 1e-25 gi|308373204|ref|ZP_07431388.2| hypothetical protein TMEG_01546 ... 122 1e-25 gi|308401092|ref|ZP_07493345.2| hypothetical protein TMLG_00631 ... 122 2e-25 gi|298525149|ref|ZP_07012558.1| predicted protein [Mycobacterium... 122 2e-25 gi|254550656|ref|ZP_05141103.1| PE_PGRS family protein [Mycobact... 122 2e-25 gi|289753739|ref|ZP_06513117.1| PE-PGRS family protein [Mycobact... 122 2e-25 gi|289447261|ref|ZP_06437005.1| PE-PGRS family protein [Mycobact... 122 2e-25 gi|148822859|ref|YP_001287613.1| PE-PGRS family protein [Mycobac... 122 2e-25 gi|240173394|ref|ZP_04752052.1| PE-PGRS family protein [Mycobact... 111 4e-22 gi|240169291|ref|ZP_04747950.1| PE family protein [Mycobacterium... 109 9e-22 gi|289443105|ref|ZP_06432849.1| PE-PGRS family protein [Mycobact... 104 3e-20 gi|289745911|ref|ZP_06505289.1| PE-PGRS family protein [Mycobact... 90.5 6e-16 gi|339294607|gb|AEJ46718.1| PE-PGRS family protein [Mycobacteriu... 90.5 6e-16 gi|240168036|ref|ZP_04746695.1| PE-PGRS family protein [Mycobact... 90.5 6e-16 gi|15839533|ref|NP_334570.1| PE family protein [Mycobacterium tu... 87.8 4e-15 gi|253797071|ref|YP_003030072.1| PE family protein [Mycobacteriu... 87.0 6e-15 gi|308369494|ref|ZP_07666741.1| LOW QUALITY PROTEIN: PE-PGRS fam... 85.1 3e-14 gi|240169119|ref|ZP_04747778.1| glycoside hydrolase family prote... 84.7 3e-14 gi|183982475|ref|YP_001850766.1| PE-PGRS family protein [Mycobac... 84.3 4e-14 gi|297733265|ref|ZP_06962383.1| PE-PGRS family protein [Mycobact... 82.0 2e-13 >gi|15843435|ref|NP_338472.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551] gi|31794986|ref|NP_857479.1| PE-PGRS family protein [Mycobacterium bovis AF2122/97] gi|57117161|ref|YP_178019.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv] 62 more sequence titles Length=504 Score = 979 bits (2530), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/504 (99%), Positives = 504/504 (100%), Gaps = 0/504 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ Sbjct 1 MSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA Sbjct 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 Query 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP 180 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP Sbjct 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP 180 Query 181 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ 240 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ Sbjct 181 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ 240 Query 241 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT 300 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT Sbjct 241 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT 300 Query 301 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL 360 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL Sbjct 301 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL 360 Query 361 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDT 420 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDT Sbjct 361 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDT 420 Query 421 PILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFGTP 480 PILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFGTP Sbjct 421 PILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFGTP 480 Query 481 FMGMAPLLINYIPQQLALAIKPAA 504 FMGMAPLLINYIPQQLALAIKPAA Sbjct 481 FMGMAPLLINYIPQQLALAIKPAA 504 >gi|289441249|ref|ZP_06430993.1| PE-PGRS family protein [Mycobacterium tuberculosis T46] gi|289755945|ref|ZP_06515323.1| PE-PGRS family protein [Mycobacterium tuberculosis EAS054] gi|289414168|gb|EFD11408.1| PE-PGRS family protein [Mycobacterium tuberculosis T46] gi|289696532|gb|EFD63961.1| PE-PGRS family protein [Mycobacterium tuberculosis EAS054] Length=504 Score = 977 bits (2525), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/504 (99%), Positives = 503/504 (99%), Gaps = 0/504 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ Sbjct 1 MSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA Sbjct 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 Query 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP 180 YGQLVANTATNLESLYGAWSANPFPFLRQIIAN QVYWQQIAAALANAVQNFPALVANLP Sbjct 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANHQVYWQQIAAALANAVQNFPALVANLP 180 Query 181 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ 240 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ Sbjct 181 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ 240 Query 241 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT 300 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT Sbjct 241 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT 300 Query 301 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL 360 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL Sbjct 301 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL 360 Query 361 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDT 420 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDT Sbjct 361 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDT 420 Query 421 PILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFGTP 480 PILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFGTP Sbjct 421 PILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFGTP 480 Query 481 FMGMAPLLINYIPQQLALAIKPAA 504 FMGMAPLLINYIPQQLALAIKPAA Sbjct 481 FMGMAPLLINYIPQQLALAIKPAA 504 >gi|289572464|ref|ZP_06452691.1| PE-PGRS family protein [Mycobacterium tuberculosis K85] gi|289536895|gb|EFD41473.1| PE-PGRS family protein [Mycobacterium tuberculosis K85] Length=504 Score = 976 bits (2524), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/504 (99%), Positives = 503/504 (99%), Gaps = 0/504 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ Sbjct 1 MSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA Sbjct 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 Query 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP 180 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP Sbjct 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP 180 Query 181 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ 240 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ Sbjct 181 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ 240 Query 241 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT 300 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT Sbjct 241 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT 300 Query 301 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL 360 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL Sbjct 301 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL 360 Query 361 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDT 420 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDT Sbjct 361 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDT 420 Query 421 PILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFGTP 480 PILVPTGLPSPLPPTVGITLHLPFDGILVPPHPV ATISFPGAPVPIPGFPTTVTVFGTP Sbjct 421 PILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVNATISFPGAPVPIPGFPTTVTVFGTP 480 Query 481 FMGMAPLLINYIPQQLALAIKPAA 504 FMGMAPLLINYIPQQLALAIKPAA Sbjct 481 FMGMAPLLINYIPQQLALAIKPAA 504 >gi|306805662|ref|ZP_07442330.1| PE-PGRS family protein [Mycobacterium tuberculosis SUMu007] gi|306970057|ref|ZP_07482718.1| PE-PGRS family protein [Mycobacterium tuberculosis SUMu009] gi|308347790|gb|EFP36641.1| PE-PGRS family protein [Mycobacterium tuberculosis SUMu007] gi|308352415|gb|EFP41266.1| PE-PGRS family protein [Mycobacterium tuberculosis SUMu009] Length=504 Score = 975 bits (2521), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/504 (99%), Positives = 503/504 (99%), Gaps = 0/504 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ Sbjct 1 MSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA Sbjct 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 Query 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP 180 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFP LVANLP Sbjct 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPVLVANLP 180 Query 181 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ 240 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ Sbjct 181 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ 240 Query 241 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT 300 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT Sbjct 241 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT 300 Query 301 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL 360 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL Sbjct 301 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL 360 Query 361 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDT 420 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDT Sbjct 361 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDT 420 Query 421 PILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFGTP 480 PILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFGTP Sbjct 421 PILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFGTP 480 Query 481 FMGMAPLLINYIPQQLALAIKPAA 504 FMGMAPLLINYIPQQLALAIKPAA Sbjct 481 FMGMAPLLINYIPQQLALAIKPAA 504 >gi|340628781|ref|YP_004747233.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059] gi|340006971|emb|CCC46162.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059] Length=504 Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/504 (99%), Positives = 500/504 (99%), Gaps = 0/504 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFVV VPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ Sbjct 1 MSFVVAVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 EFQ VSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA Sbjct 61 EFQAVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 Query 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP 180 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP Sbjct 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP 180 Query 181 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ 240 AAI+AAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPN AAELQLAFQ Sbjct 181 AAIEAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNFAAELQLAFQ 240 Query 241 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT 300 QLLVGDYNAAVA+LGKAMTNLLVTGFDTSDVTIGTMGT ISVTAKPKLLGPLGDLFTIMT Sbjct 241 QLLVGDYNAAVADLGKAMTNLLVTGFDTSDVTIGTMGTAISVTAKPKLLGPLGDLFTIMT 300 Query 301 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL 360 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL Sbjct 301 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL 360 Query 361 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDT 420 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDT Sbjct 361 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDT 420 Query 421 PILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFGTP 480 PILVPTGLPSPLPPTVGITLHLPFDG+LVPPHPVTATISFPGAPVPIPGFPTTVTVFGTP Sbjct 421 PILVPTGLPSPLPPTVGITLHLPFDGLLVPPHPVTATISFPGAPVPIPGFPTTVTVFGTP 480 Query 481 FMGMAPLLINYIPQQLALAIKPAA 504 FMGMAPLLINYIPQQLALAIKPAA Sbjct 481 FMGMAPLLINYIPQQLALAIKPAA 504 >gi|289748341|ref|ZP_06507719.1| PE-PGRS family protein [Mycobacterium tuberculosis T92] gi|289688928|gb|EFD56357.1| PE-PGRS family protein [Mycobacterium tuberculosis T92] Length=419 Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/419 (99%), Positives = 418/419 (99%), Gaps = 0/419 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ Sbjct 1 MSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA Sbjct 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 Query 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP 180 YGQLVANTATNLESLYGAWSANPFPFLRQIIAN QVYWQQIAAALANAVQNFPALVANLP Sbjct 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANHQVYWQQIAAALANAVQNFPALVANLP 180 Query 181 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ 240 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ Sbjct 181 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ 240 Query 241 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT 300 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT Sbjct 241 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT 300 Query 301 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL 360 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL Sbjct 301 IPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPL 360 Query 361 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLD 419 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLD Sbjct 361 VLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLD 419 >gi|167969925|ref|ZP_02552202.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra] Length=525 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/328 (99%), Positives = 327/328 (99%), Gaps = 0/328 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ Sbjct 1 MSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA Sbjct 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 Query 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP 180 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP Sbjct 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP 180 Query 181 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ 240 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ Sbjct 181 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ 240 Query 241 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT 300 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT Sbjct 241 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT 300 Query 301 IPAQEAQYFTNLMPPSILRDMSQNFTNV 328 IPAQEAQYFTNLMPPSILRDMSQNFTN Sbjct 301 IPAQEAQYFTNLMPPSILRDMSQNFTNC 328 >gi|289759979|ref|ZP_06519357.1| predicted protein [Mycobacterium tuberculosis T85] gi|289715543|gb|EFD79555.1| predicted protein [Mycobacterium tuberculosis T85] Length=280 Score = 509 bits (1310), Expect = 5e-142, Method: Compositional matrix adjust. Identities = 263/265 (99%), Positives = 264/265 (99%), Gaps = 0/265 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ Sbjct 1 MSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA Sbjct 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 Query 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP 180 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP Sbjct 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP 180 Query 181 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ 240 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ Sbjct 181 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ 240 Query 241 QLLVGDYNAAVANLGKAMTNLLVTG 265 QLLVGDYNAAVANLGKAMTN LVTG Sbjct 241 QLLVGDYNAAVANLGKAMTNFLVTG 265 >gi|118617278|ref|YP_905610.1| PE-PGRS family protein [Mycobacterium ulcerans Agy99] gi|118569388|gb|ABL04139.1| PE-PGRS family protein [Mycobacterium ulcerans Agy99] Length=614 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 164/395 (42%), Positives = 232/395 (59%), Gaps = 26/395 (6%) Query 116 APGGAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPAL 175 APGGA+ QL NT++NL +L AWS +PFP LRQ+IANQQ Y + L+ A+QN P Sbjct 240 APGGAWQQLFENTSSNLNALGTAWSEDPFPLLRQVIANQQGYAYTLGQDLSLAIQNLPTE 299 Query 176 VANLPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTV---GQGVTSVIAGWPNLA 232 +A+LP I+ +Q FLAFN Y QQ ++S + T++ GQ + +AG+P Sbjct 300 LAHLPENIETGIQGFLAFNPGLYAQQFVASTMNDFHTIGTSLSEAGQDLQIGLAGFP--- 356 Query 233 AELQLAFQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPL 292 A++Q A++ G+YN AV + KA+ N+ +TGFDTS++ +LLGP+ Sbjct 357 ADMQPAYEAFAAGNYNLAVNDATKALLNVFITGFDTSNLN------------DIRLLGPV 404 Query 293 GDLFTIMTIPAQEAQYFTNLMPP-SILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGT 351 DLF I+ +P Q+ Q F+NL+P SI M+ N NVL L++ +I S + A Sbjct 405 ADLFPILALPGQDVQGFSNLLPAGSIPAQMTHNLANVLNALTDTSISTTISGTLDPPALV 464 Query 352 LSTFFGVPLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGF 411 L FG+PL + + GAP A L+ +AT+ TI + +GN VG LIDAPA LDGF Sbjct 465 LDANFGLPLSILFGVAGAPVAGLDGLATAGTTIGTGVASGNPFMVVGGLIDAPAVVLDGF 524 Query 412 LNSATVLDTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPG-- 469 LN T++D + V +P P + + +HLPF G+LVPPHP+TAT+ P+ I G Sbjct 525 LNGETIVDMSLPVTFDVPVLGPLNIPVVIHLPFQGLLVPPHPITATV-----PLEILGVD 579 Query 470 FPTTVTVFGTPFMGMAPLLINYIPQQLALAIKPAA 504 P +T+ GT F G+ P L+NY + LA AI PAA Sbjct 580 IPINLTLGGTQFGGLVPTLVNYTSRHLANAITPAA 614 Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 69/117 (59%), Positives = 80/117 (69%), Gaps = 4/117 (3%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFV+ PE V AAA DLA I STL A AAAGPTTG+AAAAAD+VS A++ LFG YGQ Sbjct 1 MSFVIADPEMVTAAAADLAGIRSTLGAAAEAAAGPTTGVAAAAADEVSAAIAHLFGAYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAP 117 EFQ ++ + AAFH E VR LN GAA+YL+ E N L GQ G AAAAA P Sbjct 61 EFQALNGRAAAFHAELVRLLNGGAASYLSAEVVNVEALLGQSLNG----GAAAAADP 113 >gi|183982474|ref|YP_001850765.1| PE-PGRS family protein [Mycobacterium marinum M] gi|7630284|gb|AAF65170.1|AF201682_4 PE-PGRS homolog MAG24-3 [Mycobacterium marinum] gi|183175800|gb|ACC40910.1| PE-PGRS family protein [Mycobacterium marinum M] Length=614 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 164/404 (41%), Positives = 232/404 (58%), Gaps = 26/404 (6%) Query 107 RAVSAAAAAAPGGAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALA 166 +V APGGA+ QL NT++NL +L AWS +PFP LRQ+IANQQ Y + L+ Sbjct 231 SSVDTTTTPAPGGAWQQLFENTSSNLNALGTAWSEDPFPLLRQVIANQQGYAYTLGQDLS 290 Query 167 NAVQNFPALVANLPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTV---GQGVTS 223 A+QN P +A+LP I+ +Q FLAFN Y QQ ++ + T++ GQ + Sbjct 291 LAIQNLPTELAHLPENIETGIQGFLAFNPGLYAQQFVAGTMNDFHTIGTSLSEAGQDLQI 350 Query 224 VIAGWPNLAAELQLAFQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVT 283 +AG+P A++Q A++ G+YN AV + KA+ N+ +TGFDTS++ Sbjct 351 GLAGFP---ADMQPAYEAFAAGNYNLAVNDATKALLNVFITGFDTSNLN----------- 396 Query 284 AKPKLLGPLGDLFTIMTIPAQEAQYFTNLMPP-SILRDMSQNFTNVLTTLSNPNIQAVAS 342 +LLGP+ DLF I+ +P Q+ Q F+NL+P SI M+ N NVL L++ +I S Sbjct 397 -DIRLLGPVADLFPILALPGQDVQGFSNLLPAGSIPAQMTHNLANVLNALTDTSISTTIS 455 Query 343 FDIATTAGTLSTFFGVPLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALID 402 + A L FG+PL + + GAP A L+ +AT+ TI + GN VG LID Sbjct 456 GTLDPPALVLDANFGLPLSILFGVAGAPVAGLDGLATAGTTIGTGVATGNPFMVVGGLID 515 Query 403 APAHALDGFLNSATVLDTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPG 462 APA LDGFLN T++D + V +P P + + +HLPF G+LVPPHP+TAT+ Sbjct 516 APAVVLDGFLNGETIVDMSLPVTFDVPVLGPLNIPVVIHLPFQGLLVPPHPITATV---- 571 Query 463 APVPIPG--FPTTVTVFGTPFMGMAPLLINYIPQQLALAIKPAA 504 P+ I G P +T+ GT F G+ P L+NY + LA AI PAA Sbjct 572 -PLEILGVDIPINLTLGGTQFGGLVPTLVNYTSRHLANAITPAA 614 Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 69/117 (59%), Positives = 80/117 (69%), Gaps = 4/117 (3%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFV+ PE V AAA DLA I STL A AAAGPTTG+AAAAAD+VS A++ LFG YGQ Sbjct 1 MSFVIADPEMVTAAAADLAGIRSTLGAAAEAAAGPTTGVAAAAADEVSAAIAHLFGAYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAP 117 EFQ ++ + AAFH E VR LN GAA+YL+ E N L GQ G AAAAA P Sbjct 61 EFQALNGRAAAFHAELVRLLNGGAASYLSAEVVNVEALLGQSLNG----GAAAAADP 113 >gi|240173029|ref|ZP_04751687.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478] Length=521 Score = 270 bits (690), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 208/547 (39%), Positives = 285/547 (53%), Gaps = 83/547 (15%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFV+ PE V AA DLA + S+L EA A AAGPTTG+AAAA D+VSIA++ +FG +GQ Sbjct 1 MSFVIAAPELVQGAAHDLAGLRSSLAEAAAIAAGPTTGIAAAAQDEVSIAIASMFGNFGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESAN--------------------GGQLFG 100 EFQ +S Q AFH FV LN GA AYL+ E+AN G ++ G Sbjct 61 EFQVLSAQAQAFHDRFVSLLNTGAGAYLSAEAANVEQTLLGGGAGGVTQLLGNVGQEVAG 120 Query 101 QIEAGQRAVSA------------AAAAAPG-------------GAYGQLVANTATNLESL 135 QI+ G +A+S A PG G Y L A T NL+SL Sbjct 121 QIQTGAQAISQAIGGLQTGLGALATGGLPGLPDGLASFGATVAGPYQTLFATTGANLQSL 180 Query 136 YGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLPAAIDAAVQQFLAFNA 195 A +ANP P L QI++NQ Y Q +A AL +A+QNFPA +A +PA I + L+ + Sbjct 181 QSALAANPQPLLHQILSNQTGYQQTVATALQSAIQNFPADLATVPADI----RNLLSGDP 236 Query 196 AYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQQLLVGDYNAAVANLG 255 A +Q II+ +G+AQ T + G L + Q AFQ L G+ + AV ++ Sbjct 237 AAVLQTIINQHMGYAQTINTALHSAAQDFRTGAAGLHSAFQAAFQDLATGNVDGAVGDIS 296 Query 256 KAMTNLLVTGFD-TSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMTIPAQEAQYFTNLMP 314 + +L +TGF T D+ G + TI+ T G LGDL + IP Q AQ FTNL+P Sbjct 297 TGLRDLFLTGFAPTVDLDTGII--TITPT------GTLGDLIPTLAIPGQMAQNFTNLLP 348 Query 315 P-SILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPLVLTYATLGAPFAS 373 SI +SQN TNV+ T ++ + D+ GT + G+PLVL +G + Sbjct 349 AGSIPAQISQNLTNVIQTATS----TTQTLDL----GTGALHVGLPLVLALDAIGPAVTT 400 Query 374 LNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDTPILVPTGLPSPLP 433 NA +SA + A+ G+ LGAV ALIDAPA +GFLN L + V GL + Sbjct 401 ANAFGSSASAVIGAMQTGDMLGAVTALIDAPAVVANGFLNGHATLPLALSV-LGLDT--- 456 Query 434 PTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFGTPFMGMAPLLINYIP 493 T ++P GIL P + T++ G +P + GT F G+ P L+ ++P Sbjct 457 -----TTNIPLGGILTPAETASLTLTVFGETGTLP-------LSGTAFGGIVPALLTFLP 504 Query 494 QQLALAI 500 +QLA AI Sbjct 505 EQLAEAI 511 >gi|183982472|ref|YP_001850763.1| PE-PGRS family protein [Mycobacterium marinum M] gi|7630282|gb|AAF65168.1|AF201682_2 PE-PGRS homolog MAG24-1 [Mycobacterium marinum] gi|183175798|gb|ACC40908.1| PE-PGRS family protein [Mycobacterium marinum M] Length=638 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 143/387 (37%), Positives = 207/387 (54%), Gaps = 34/387 (8%) Query 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANLP 180 Y L++NT TNL+SL GAW+ANP PFL Q+IANQ Y Q A AL ++V N PA +A+LP Sbjct 272 YQTLISNTVTNLQSLDGAWAANPAPFLHQLIANQMGYAQTAATALQSSVSNLPAALAHLP 331 Query 181 AAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQ 240 A I +A + ++ ++++Q+G+AQ +T + G L A Q AFQ Sbjct 332 ADIQLGTHSLMAADPGAFLHSLVTNQLGYAQTISTALQSAAHDFGTGAAALPAAYQAAFQ 391 Query 241 QLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMT 300 + G+ + A ++ + NL +TGFD T G+ ++ P G +GDL I+ Sbjct 392 DFMAGNVSGAADHVESGLANLFITGFDV------TPGSDAVLSITPT--GTVGDLLPILG 443 Query 301 IPAQEAQYFTNLMPP-SILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGT-----LST 354 IP Q AQ FTNL+P S+ +SQNFTN++ +N + + + + ++ T + Sbjct 444 IPGQMAQNFTNLLPAGSVPELVSQNFTNIVNAATNTAVTSTLTLVVDPSSPTGVGVAIDA 503 Query 355 FFGVPLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNS 414 G+PL L LG P +++A TSA A +GN L A A++DAPA +G N Sbjct 504 TMGLPLALGVEALGGPVDAIDAFGTSATAFVTAAQSGNVLAATAAVLDAPAVVANGLFNG 563 Query 415 ATVLDTPILVPT-GLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTT 473 + P+ + G+P+ TL+LP DGILVP P TAT IP T Sbjct 564 QSTF--PLTIDALGIPT--------TLNLPMDGILVPAGPYTAT---------IPDLGVT 604 Query 474 VTVFGTPFMGMAPLLINYIPQQLALAI 500 TV GTP G+AP L+ +P+QLA AI Sbjct 605 ATVNGTPLGGVAPGLLTLLPEQLAEAI 631 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/92 (64%), Positives = 68/92 (74%), Gaps = 0/92 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFV VP VAAAAGDLA+I S L EATAAAAGPTT + AA D+VS A+SQLFG +GQ Sbjct 1 MSFVNVVPNTVAAAAGDLASIRSALSEATAAAAGPTTDVLAAGGDEVSTAISQLFGAHGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTES 92 EFQ VS QL FH + VR + GAAAY + E+ Sbjct 61 EFQVVSAQLRGFHDQLVRLMRAGAAAYASVEA 92 >gi|183983477|ref|YP_001851768.1| PE-PGRS family protein [Mycobacterium marinum M] gi|183176803|gb|ACC41913.1| PE-PGRS family protein [Mycobacterium marinum M] Length=533 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 134/394 (35%), Positives = 200/394 (51%), Gaps = 53/394 (13%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G + L ANT NL+++Y W+A+PFP +Q+IANQ Y + I LA A Q+ PA VAN Sbjct 182 GPWQTLFANTGANLQTIYSDWAAHPFPVAQQVIANQAEYARTIGGGLAAAAQDLPATVAN 241 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 LPA I AV + F A +Q + Q+G+ Q+ + + PN ++ A Sbjct 242 LPANIGLAVADAVNFPA--ELQGYLGKQVGYGQVVVDALQNAGAELPQTLPNFFGDVDKA 299 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 Q ++ GDYN AV + +A +L ++G + ++++ +T + GP G+L + Sbjct 300 NQAVMAGDYNDAVDYVPRAAVDLFLSGVNINNLS--------QITVE----GPAGELLPL 347 Query 299 MTIPAQEAQYFTNLMPP-SILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFG 357 M++PAQ Q +L+PP +IL M QN N T+ N Sbjct 348 MSLPAQMQQDLIDLLPPGAILTQMVQNSFNATNTVVN----------------------- 384 Query 358 VPLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATV 417 + A +G P A+L+ AT + A+ GN +GAVGAL+D PA+ LDGFLN TV Sbjct 385 ---SIALAAIGPPIATLDGFATGLTVLGGAVATGNGVGAVGALLDMPAYVLDGFLNGETV 441 Query 418 LDTPILVPTGLPSPLPP-----TVG----ITLHLPFDGILVPPHPVTATISFPGAPVPIP 468 ++ + V + PL P VG + + +PF G+L P P+TATI PG P Sbjct 442 VELRVPVSETVTIPLTPLTPPIVVGANTPVLVRMPFGGVLAQPQPITATIELPGTGSPA- 500 Query 469 GFPTTVTVFGTPFMGMAPLLINYIPQQLALAIKP 502 P +T+ G+ P L+N IPQ++A AI P Sbjct 501 --PLDITIPDMQVAGVVPTLLNVIPQRVAEAIAP 532 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 59/94 (63%), Positives = 73/94 (78%), Gaps = 0/94 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +S VV P+A++ AAG LA IGS + +ATAA AGPTT +AAAA+DDVSIA+S+ FG YG+ Sbjct 1 MSLVVAEPDALSNAAGHLAGIGSKIEDATAAGAGPTTTVAAAASDDVSIAISEFFGTYGK 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESAN 94 +FQT S + AAFH EFV L GAAAYL+TE AN Sbjct 61 QFQTFSARAAAFHDEFVSLLRGGAAAYLDTEFAN 94 >gi|183983550|ref|YP_001851841.1| PE-PGRS family protein [Mycobacterium marinum M] gi|183176876|gb|ACC41986.1| PE-PGRS family protein [Mycobacterium marinum M] Length=924 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 128/393 (33%), Positives = 175/393 (45%), Gaps = 98/393 (24%) Query 111 AAAAAAPGGAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQ 170 A++ AA GGAY L NT TNL+SL W+ANP PFL QI++NQ Y Q I AAL NA + Sbjct 629 ASSTAAVGGAYQDLFTNTITNLQSLGATWAANPAPFLGQIVSNQFGYGQLIFAALGNATR 688 Query 171 NFPALVANLPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPN 230 +F +A LP A Q LA Sbjct 689 DFTLGLAGLPPTFQTAFQAVLA-------------------------------------- 710 Query 231 LAAELQLAFQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLG 290 GD++ A +++ + ++ L+ TG DTSD++ KLLG Sbjct 711 --------------GDFSGAASDMAEGLSKLVATGVDTSDLS------------NIKLLG 744 Query 291 PLGDLFTIMTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAG 350 P+GDL I+ IP A N++ +S FT+ + P I Sbjct 745 PVGDLLPILRIPGDTAFNVANVIRTPTDTTVSVEFTSYVP----PAITGT---------- 790 Query 351 TLSTFFGVPLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDG 410 FG+P+ LT G+ + NA+ TS + A+ AG++ A+GAL+DAPA +G Sbjct 791 -----FGLPVALTLDAAGSAVTTANAVGTSVTALTNAVQAGDWPAAIGALVDAPAVVANG 845 Query 411 FLNSATVLDTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGF 470 FLN + P+ VP ++ P +GILVPPH TAT V I GF Sbjct 846 FLNGQGTMTVPLSVPI--------VDSAVINFPVNGILVPPHDYTAT-------VVIAGF 890 Query 471 PTTVTVFGTPFMGMAPLLINYIPQQLALAIKPA 503 V + GTP G+ P L+ Y PQQ A AI A Sbjct 891 SYDVPIMGTPIGGIVPGLLTYAPQQFANAIGAA 923 Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/110 (48%), Positives = 70/110 (64%), Gaps = 1/110 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +S+V+ PE + AAA DLA IGS + A AAAA PTT + AAAAD+VS A++ +FG +GQ Sbjct 1 MSYVIVAPEMLEAAASDLANIGSAIGVANAAAALPTTSVLAAAADEVSAAIAAVFGEHGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQ-LFGQIEAGQRAV 109 +Q S Q AFH +FV L G +Y E+ N GQ L G + A +A+ Sbjct 61 AYQAFSAQATAFHADFVEALTTGVGSYAAAEATNAGQALLGAVNAPAQAL 110 >gi|183982473|ref|YP_001850764.1| PE-PGRS family protein [Mycobacterium marinum M] gi|7630283|gb|AAF65169.1|AF201682_3 PE-PGRS homolog MAG24-2 [Mycobacterium marinum] gi|183175799|gb|ACC40909.1| PE-PGRS family protein [Mycobacterium marinum M] Length=556 Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 125/386 (33%), Positives = 171/386 (45%), Gaps = 95/386 (24%) Query 118 GGAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVA 177 GGAY L NT TNL+++ W+A+P PFL Q IANQQ Y + +L+N+VQ+F A + Sbjct 262 GGAYQTLFDNTWTNLQAIGATWNADPAPFLSQFIANQQTYANTVFTSLSNSVQDFGAGLV 321 Query 178 NLPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQL 237 LPAA A Q + N + ++ + +G Sbjct 322 ALPAAYQGAFQALMTGNVSGAVEILGKGYLG----------------------------- 352 Query 238 AFQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFT 297 L+ GFD ++V + VT + G LGDL Sbjct 353 -----------------------LVFNGFDYTNVPV--------VTVQ----GALGDLLP 377 Query 298 IMTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFG 357 I TIP Q +SQN TNVL T+++ +I A +I+ + + +T G Sbjct 378 ITTIPGQ----------------ISQNMTNVLQTVTDTSIMA----NISLLSPSFTT--G 415 Query 358 VPLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSA-- 415 PL L LGAP + A SA T A+ AG+ GA GA++DAPA +GFLN Sbjct 416 FPLTLALDALGAPIVTGQAALQSATTFIDAVQAGDVAGAFGAIVDAPAVIANGFLNGEGT 475 Query 416 TVLDTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVT 475 LD P + SP+ T +T +P GIL P PV +TI F P P +T Sbjct 476 ITLDLPTYL-----SPISGTESLTSAIPIGGILTPLQPVDSTIVFRVLP-HTPPVTQHIT 529 Query 476 VFGTPFMGMAPLLINYIPQQLALAIK 501 + GT F G+ P L QLA AIK Sbjct 530 LGGTEFGGLIPGL-QSASAQLADAIK 554 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/94 (55%), Positives = 66/94 (71%), Gaps = 0/94 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SF++ PE V+AA L AI S L E +AA AGPTT + AAA D+VS A+SQ+FG YGQ Sbjct 1 MSFLLVQPEMVSAATESLTAIRSALGEVSAAVAGPTTAVVAAAGDEVSAAISQVFGAYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESAN 94 EFQ ++ Q AAF EF L+ GAAAY++ E+ N Sbjct 61 EFQALNAQAAAFQAEFEGLLSGGAAAYVSAEALN 94 >gi|118617277|ref|YP_905609.1| PE-PGRS family protein [Mycobacterium ulcerans Agy99] gi|118569387|gb|ABL04138.1| PE-PGRS family protein [Mycobacterium ulcerans Agy99] Length=556 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 124/386 (33%), Positives = 170/386 (45%), Gaps = 95/386 (24%) Query 118 GGAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVA 177 GGAY L NT TNL+++ W+A+P PFL Q IANQQ Y + +L+N+VQ+F A + Sbjct 262 GGAYQTLFDNTWTNLQAIGATWNADPAPFLSQFIANQQTYANTVFTSLSNSVQDFGAGLV 321 Query 178 NLPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQL 237 LPAA A Q + N + ++ + +G Sbjct 322 ALPAAYQGAFQALMTGNVSGAVEILGKGYLG----------------------------- 352 Query 238 AFQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFT 297 L+ GFD ++V + VT + G LGDL Sbjct 353 -----------------------LVFNGFDYTNVPV--------VTVQ----GALGDLLP 377 Query 298 IMTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFG 357 + TIP Q +SQN TNVL T+++ +I A +I+ + +T G Sbjct 378 MTTIPGQ----------------ISQNMTNVLQTVTDTSIMA----NISLLNPSFTT--G 415 Query 358 VPLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLN--SA 415 PL L LGAP + A SA T A+ AG+ GA GA++DAPA +GFLN Sbjct 416 FPLTLALDALGAPIVTGQAALQSATTFIDAVQAGDVAGAFGAIVDAPAVIANGFLNGEET 475 Query 416 TVLDTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVT 475 LD P + SP+ T +T +P GIL P PV +TI F P P +T Sbjct 476 ITLDLPTYL-----SPISGTESLTSAIPIGGILTPLQPVESTIVFRVLP-HTPPVTQHIT 529 Query 476 VFGTPFMGMAPLLINYIPQQLALAIK 501 + GT F G+ P L QLA AIK Sbjct 530 LGGTEFGGLIPGL-QSASAQLADAIK 554 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/94 (55%), Positives = 66/94 (71%), Gaps = 0/94 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SF++ PE V+AA L AI S L E +AA AGPTT + AAA D+VS A+SQ+FG YGQ Sbjct 1 MSFLLVQPEMVSAATESLTAIRSALGEVSAAVAGPTTAVVAAAGDEVSAAISQVFGAYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESAN 94 EFQ ++ Q AAF EF L+ GAAAY++ E+ N Sbjct 61 EFQALNAQAAAFQAEFEGLLSGGAAAYVSAEALN 94 >gi|308370784|ref|ZP_07422704.2| PE-PGRS family protein [Mycobacterium tuberculosis SUMu003] gi|308330929|gb|EFP19780.1| PE-PGRS family protein [Mycobacterium tuberculosis SUMu003] Length=592 Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 126/384 (33%), Positives = 176/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 305 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 364 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q A Sbjct 365 IPPSLQSALQALAA---------------------------------------------- 378 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 GD + AV ++ A+ + V+G D SD++ LLGP+GDLF I Sbjct 379 ------GDVSGAVTDVLGAVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 420 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 421 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 460 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 461 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 520 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 521 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 568 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 569 TPAGGIVPALVNYAPTQLAQAIAP 592 >gi|308231897|ref|ZP_07414174.2| hypothetical protein TMAG_01484 [Mycobacterium tuberculosis SUMu001] gi|308215752|gb|EFO75151.1| hypothetical protein TMAG_01484 [Mycobacterium tuberculosis SUMu001] Length=595 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 126/384 (33%), Positives = 176/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 308 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 367 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q A Sbjct 368 IPPSLQSALQALAA---------------------------------------------- 381 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 GD + AV ++ A+ + V+G D SD++ LLGP+GDLF I Sbjct 382 ------GDVSGAVTDVLGAVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 423 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 424 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 463 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 464 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 523 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 524 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 571 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 572 TPAGGIVPALVNYAPTQLAQAIAP 595 >gi|15841107|ref|NP_336144.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551] gi|13881323|gb|AAK45958.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551] Length=1011 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 724 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 783 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 784 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 809 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 810 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 839 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 840 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 879 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 880 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 939 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 940 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 987 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 988 TPAGGIVPALVNYAPTQLAQAIAP 1011 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/81 (57%), Positives = 59/81 (73%), Gaps = 0/81 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SF++ P+ V AAA +LA I S L EA AAA+ PTT LA+A AD+VS AVS+LFG YGQ Sbjct 1 MSFLLVEPDLVTAAAANLAGIRSALSEAAAAASTPTTALASAGADEVSAAVSRLFGAYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLN 81 +FQ ++ + A FH EFV LN Sbjct 61 QFQALNARAATFHAEFVSLLN 81 >gi|339631707|ref|YP_004723349.1| PE-PGRS family protein [Mycobacterium africanum GM041182] gi|339331063|emb|CCC26735.1| PE-PGRS family protein [Mycobacterium africanum GM041182] Length=1018 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 731 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 790 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 791 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 816 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 817 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 846 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 847 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 886 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 887 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 946 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 947 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 994 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 995 TPAGGIVPALVNYAPTQLAQAIAP 1018 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/81 (57%), Positives = 59/81 (73%), Gaps = 0/81 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SF++ P+ V AAA +LA I S L EA AAA+ PTT LA+A AD+VS AVS+LFG YGQ Sbjct 1 MSFLLVEPDLVTAAAANLAGIRSALSEAAAAASTPTTALASAGADEVSAAVSRLFGAYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLN 81 +FQ ++ + A FH EFV LN Sbjct 61 QFQALNARAATFHAEFVSLLN 81 >gi|340626657|ref|YP_004745109.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059] gi|340004847|emb|CCC43992.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059] Length=1018 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 731 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 790 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 791 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 816 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 817 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 846 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 847 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 886 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 887 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 946 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 947 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 994 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 995 TPAGGIVPALVNYAPTQLAQAIAP 1018 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/81 (56%), Positives = 58/81 (72%), Gaps = 0/81 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SF++ P+ V AAA +LA I S L EA AAA+ PTT LA+A D+VS AVS+LFG YGQ Sbjct 1 MSFLLVEPDLVTAAAANLAGIRSALSEAAAAASTPTTALASAGTDEVSAAVSRLFGAYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLN 81 +FQ ++ + A FH EFV LN Sbjct 61 QFQALNARAATFHAEFVSLLN 81 >gi|339298242|gb|AEJ50352.1| PE-PGRS family protein [Mycobacterium tuberculosis CCDC5180] Length=1018 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 731 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 790 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 791 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 816 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 817 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 846 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 847 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 886 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 887 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 946 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 947 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 994 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 995 TPAGGIVPALVNYAPTQLAQAIAP 1018 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/81 (57%), Positives = 59/81 (73%), Gaps = 0/81 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SF++ P+ V AAA +LA I S L EA AAA+ PTT LA+A AD+VS AVS+LFG YGQ Sbjct 1 MSFLLVEPDLVTAAAANLAGIRSALSEAAAAASTPTTALASAGADEVSAAVSRLFGAYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLN 81 +FQ ++ + A FH EFV LN Sbjct 61 QFQALNARAATFHAEFVSLLN 81 >gi|253799309|ref|YP_003032310.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435] gi|297634204|ref|ZP_06951984.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 4207] gi|297731191|ref|ZP_06960309.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN R506] gi|313658523|ref|ZP_07815403.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN V2475] gi|253320812|gb|ACT25415.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435] gi|328459060|gb|AEB04483.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 4207] Length=1011 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 724 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 783 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 784 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 809 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 810 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 839 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 840 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 879 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 880 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 939 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 940 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 987 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 988 TPAGGIVPALVNYAPTQLAQAIAP 1011 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/81 (57%), Positives = 59/81 (73%), Gaps = 0/81 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SF++ P+ V AAA +LA I S L EA AAA+ PTT LA+A AD+VS AVS+LFG YGQ Sbjct 1 MSFLLVEPDLVTAAAANLAGIRSALSEAAAAASTPTTALASAGADEVSAAVSRLFGAYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLN 81 +FQ ++ + A FH EFV LN Sbjct 61 QFQALNARAATFHAEFVSLLN 81 >gi|31792838|ref|NP_855331.1| PE-PGRS family protein [Mycobacterium bovis AF2122/97] gi|121637559|ref|YP_977782.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990034|ref|YP_002644721.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172] gi|31618428|emb|CAD96346.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97] gi|121493206|emb|CAL71677.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773147|dbj|BAH25953.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172] gi|341601577|emb|CCC64250.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=1018 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 731 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 790 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 791 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 816 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 817 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 846 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 847 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 886 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 887 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 946 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 947 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 994 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 995 TPAGGIVPALVNYAPTQLAQAIAP 1018 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/81 (57%), Positives = 59/81 (73%), Gaps = 0/81 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SF++ P+ V AAA +LA I S L EA AAA+ PTT LA+A AD+VS AVS+LFG YGQ Sbjct 1 MSFLLVEPDLVTAAAANLAGIRSALSEAAAAASTPTTALASAGADEVSAAVSRLFGAYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLN 81 +FQ ++ + A FH EFV LN Sbjct 61 QFQALNARAATFHAEFVSLLN 81 >gi|57116897|ref|YP_177826.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv] gi|148661447|ref|YP_001282970.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra] gi|7476136|pir||F70620 hypothetical glycine-rich protein Rv1651c - Mycobacterium tuberculosis (strain H37RV) gi|38684046|emb|CAE55411.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148505599|gb|ABQ73408.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra] gi|344219472|gb|AEN00103.1| PE-PGRS family protein [Mycobacterium tuberculosis CTRI-2] Length=1011 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 724 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 783 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 784 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 809 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 810 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 839 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 840 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 879 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 880 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 939 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 940 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 987 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 988 TPAGGIVPALVNYAPTQLAQAIAP 1011 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/81 (57%), Positives = 59/81 (73%), Gaps = 0/81 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SF++ P+ V AAA +LA I S L EA AAA+ PTT LA+A AD+VS AVS+LFG YGQ Sbjct 1 MSFLLVEPDLVTAAAANLAGIRSALSEAAAAASTPTTALASAGADEVSAAVSRLFGAYGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLN 81 +FQ ++ + A FH EFV LN Sbjct 61 QFQALNARAATFHAEFVSLLN 81 >gi|240170011|ref|ZP_04748670.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478] Length=382 Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/212 (44%), Positives = 109/212 (52%), Gaps = 40/212 (18%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFV+T PE +A AA DLA I ST+ A AAAA P TG+ AA D+VS A+S LF YG+ Sbjct 1 MSFVITAPETMAVAATDLADISSTISSANAAAAAPITGVVAAGTDEVSAAISGLFNAYGR 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQ------------LFGQ---IEAG 105 EFQ +S Q A FH V LN GAAAYL TE AN Q L G G Sbjct 61 EFQALSAQAATFHERLVSLLNGGAAAYLGTEIANAEQASISAVNAPAQTLLGHPLIPTGG 120 Query 106 QRAVSAAAAA-----------------------APG--GAYGQLVANTATNLESLYGAWS 140 A+ A PG G Y L+A T+ NL+SL W+ Sbjct 121 PSALGQGVGAMMAAGRGAVAAAAGSAAALAAEATPGIAGPYQDLIATTSANLQSLGSTWA 180 Query 141 ANPFPFLRQIIANQQVYWQQIAAALANAVQNF 172 NP PFLRQI+ANQ Y Q IA +L NA Q+ Sbjct 181 TNPAPFLRQIVANQMAYGQTIATSLQNAAQHL 212 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 67/210 (32%), Positives = 90/210 (43%), Gaps = 55/210 (26%) Query 294 DLFTIMTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLS 353 DLF I IPAQ + QN N+ TTL+ Sbjct 228 DLFPITAIPAQ----------------IQQNLVNIGTTLTK------------------- 252 Query 354 TFFGVPLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLN 413 V + A LG ++L T+ + A+ G+ GA+GALIDAPA +GFLN Sbjct 253 ----VTPAVALAALGPSLSTLGGFGTAMAALTGAVQTGDVAGALGALIDAPAFVANGFLN 308 Query 414 SATVLDTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTT 473 T + L +PFDGIL PPH +T T+ + +P F Sbjct 309 GEV---------TLPLLLPLGLGLVVLDIPFDGILAPPHAMTGTLVW-----FLPPFVDD 354 Query 474 VTVFGTPFMGMAPLLINYIPQQLALAIKPA 503 ++ G P G+ P L+N +PQQLALAI PA Sbjct 355 IS--GPPVSGILPTLMNVVPQQLALAITPA 382 >gi|306788751|ref|ZP_07427073.1| LOW QUALITY PROTEIN: hypothetical protein TMDG_02283 [Mycobacterium tuberculosis SUMu004] gi|308334700|gb|EFP23551.1| LOW QUALITY PROTEIN: hypothetical protein TMDG_02283 [Mycobacterium tuberculosis SUMu004] Length=373 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 86 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 145 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 146 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 171 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 172 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 201 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 202 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 241 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 242 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 301 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 302 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 349 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 350 TPAGGIVPALVNYAPTQLAQAIAP 373 >gi|306967746|ref|ZP_07480407.1| hypothetical protein TMIG_01902 [Mycobacterium tuberculosis SUMu009] gi|308354674|gb|EFP43525.1| hypothetical protein TMIG_01902 [Mycobacterium tuberculosis SUMu009] Length=392 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 105 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 164 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 165 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 190 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 191 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 220 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 221 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 260 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 261 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 320 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 321 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 368 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 369 TPAGGIVPALVNYAPTQLAQAIAP 392 >gi|294996600|ref|ZP_06802291.1| PE-PGRS family protein [Mycobacterium tuberculosis 210] Length=637 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 350 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 409 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 410 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 435 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 436 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 465 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 466 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 505 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 506 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 565 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 566 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 613 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 614 TPAGGIVPALVNYAPTQLAQAIAP 637 >gi|167968395|ref|ZP_02550672.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra] Length=437 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 150 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 209 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 210 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 235 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 236 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 265 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 266 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 305 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 306 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 365 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 366 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 413 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 414 TPAGGIVPALVNYAPTQLAQAIAP 437 >gi|289574320|ref|ZP_06454547.1| PE-PGRS family protein [Mycobacterium tuberculosis K85] gi|289538751|gb|EFD43329.1| PE-PGRS family protein [Mycobacterium tuberculosis K85] Length=386 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 99 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 158 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 159 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 184 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 185 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 214 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 215 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 254 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 255 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 314 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 315 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 362 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 363 TPAGGIVPALVNYAPTQLAQAIAP 386 >gi|308373204|ref|ZP_07431388.2| hypothetical protein TMEG_01546 [Mycobacterium tuberculosis SUMu005] gi|308338541|gb|EFP27392.1| hypothetical protein TMEG_01546 [Mycobacterium tuberculosis SUMu005] Length=514 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 227 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 286 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 287 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 312 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 313 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 342 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 343 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 382 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 383 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 442 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 443 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 490 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 491 TPAGGIVPALVNYAPTQLAQAIAP 514 >gi|308401092|ref|ZP_07493345.2| hypothetical protein TMLG_00631 [Mycobacterium tuberculosis SUMu012] gi|308366147|gb|EFP54998.1| hypothetical protein TMLG_00631 [Mycobacterium tuberculosis SUMu012] Length=350 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 63 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 122 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 123 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 148 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 149 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 178 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 179 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 218 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 219 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 278 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 279 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 326 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 327 TPAGGIVPALVNYAPTQLAQAIAP 350 >gi|298525149|ref|ZP_07012558.1| predicted protein [Mycobacterium tuberculosis 94_M4241A] gi|298494943|gb|EFI30237.1| predicted protein [Mycobacterium tuberculosis 94_M4241A] Length=351 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 64 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 123 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 124 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 149 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 150 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 179 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 180 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 219 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 220 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 279 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 280 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 327 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 328 TPAGGIVPALVNYAPTQLAQAIAP 351 >gi|254550656|ref|ZP_05141103.1| PE_PGRS family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length=398 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 111 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 170 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 171 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 196 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 197 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 226 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 227 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 266 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 267 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 326 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 327 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 374 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 375 TPAGGIVPALVNYAPTQLAQAIAP 398 >gi|289753739|ref|ZP_06513117.1| PE-PGRS family protein [Mycobacterium tuberculosis EAS054] gi|289694326|gb|EFD61755.1| PE-PGRS family protein [Mycobacterium tuberculosis EAS054] Length=383 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 96 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 155 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 156 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 181 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 182 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 211 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 212 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 251 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 252 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 311 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 312 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 359 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 360 TPAGGIVPALVNYAPTQLAQAIAP 383 >gi|289447261|ref|ZP_06437005.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A] gi|289420219|gb|EFD17420.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A] Length=389 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 102 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 161 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 162 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 187 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 188 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 217 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 218 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 257 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 258 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 317 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 318 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 365 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 366 TPAGGIVPALVNYAPTQLAQAIAP 389 >gi|148822859|ref|YP_001287613.1| PE-PGRS family protein [Mycobacterium tuberculosis F11] gi|289554574|ref|ZP_06443784.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 605] gi|289569698|ref|ZP_06449925.1| PE-PGRS family protein [Mycobacterium tuberculosis T17] 10 more sequence titles Length=386 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 127/384 (34%), Positives = 175/384 (46%), Gaps = 96/384 (25%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 99 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 158 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 159 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 184 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 185 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 214 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 215 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 254 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 255 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 314 Query 419 DTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFG 478 P+ +PT +P +T+ +P GIL P P AT A +P+ G P TVT+ G Sbjct 315 --PLALPTSATGGIP----VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEG 362 Query 479 TPFMGMAPLLINYIPQQLALAIKP 502 TP G+ P L+NY P QLA AI P Sbjct 363 TPAGGIVPALVNYAPTQLAQAIAP 386 >gi|240173394|ref|ZP_04752052.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478] Length=431 Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 116/338 (35%), Positives = 157/338 (47%), Gaps = 47/338 (13%) Query 172 FPALVANLPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNL 231 + ALVAN + A+ A + A ++ QI + G+ QL ++G VT + NL Sbjct 130 YEALVANTAVNL-ASTSATSAGSPAPFLSQIADNLDGYIQLTGQSLGAAVTDFNSNLYNL 188 Query 232 AAELQLAFQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAK-PKLL- 289 L AF LL G+ + AV + + L V DTS + SVT P+L Sbjct 189 PQHLMAAFSDLLAGNISGAVQQVANGVFGLFV---DTSSL--------FSVTGNFPQLTA 237 Query 290 ---GPLGDLFTIMTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIA 346 G LGDL I+TIP + AQ N NV+ L++P I S D+ Sbjct 238 VVNGALGDLLPILTIPGESAQ----------------NVANVVKLLTDPTI----SVDVT 277 Query 347 TTAGTLSTFFGVPLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAH 406 T G P+ L +G F++ A SA QA+ AGN A+ L+DAPA Sbjct 278 NFLAPTQTL-GFPVALGLELVGPAFSTAAAAGKSAAAFSQAVQAGNMPAALTVLVDAPAV 336 Query 407 ALDGFLNSATVLDTPILVPTGLPSPL----PPTVGITLHLPFDGILVPPHPVTATISFPG 462 DGFLN VL TP+ + PL P T+ + ++PF+GIL P +TA Sbjct 337 IADGFLNGQYVLPTPLTLTVPFVVPLVGVVPQTITLQNNVPFNGILHPLERITAI----- 391 Query 463 APVPIPGFPTTVTVFGTPFMGMAPLLINYIPQQLALAI 500 AP P+ G VT GT G+ P L+NY PQQLA AI Sbjct 392 APNPLTGGMLNVTTNGTEIGGIVPALLNYWPQQLANAI 429 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/146 (36%), Positives = 70/146 (48%), Gaps = 10/146 (6%) Query 120 AYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVANL 179 AY LVANTA NL S + +P PFL QI N Y Q +L AV +F + + NL Sbjct 129 AYEALVANTAVNLASTSATSAGSPAPFLSQIADNLDGYIQLTGQSLGAAVTDFNSNLYNL 188 Query 180 PAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAF 239 P + AA LA N + +QQ+ + G LF T + SV +P L A + A Sbjct 189 PQHLMAAFSDLLAGNISGAVQQVANGVFG---LFVDT--SSLFSVTGNFPQLTAVVNGAL 243 Query 240 QQLL-----VGDYNAAVANLGKAMTN 260 LL G+ VAN+ K +T+ Sbjct 244 GDLLPILTIPGESAQNVANVVKLLTD 269 >gi|240169291|ref|ZP_04747950.1| PE family protein [Mycobacterium kansasii ATCC 12478] Length=328 Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 71/166 (43%), Positives = 95/166 (58%), Gaps = 16/166 (9%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFV+T PE + AA DLAA+ STL E + AAGPTT LAAAA D+VS ++ LFG +G+ Sbjct 1 MSFVLT-PEMLTTAAQDLAAMHSTLGEVSVTAAGPTTALAAAAEDEVSAGIAALFGAFGR 59 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 E+Q VS+Q AFH FV LN GA+AY + E+AN AAA+ Sbjct 60 EYQIVSSQAQAFHERFVNLLNAGASAYCSAEAANVSSF------------TAAASVNTDP 107 Query 121 YGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALA 166 Y L+ANT NL+ + W+ P L + + Y Q I+ +LA Sbjct 108 YQNLIANTTGNLQRISNTWTNKTAPSLLRAVTG---YPQLISTSLA 150 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/152 (37%), Positives = 82/152 (54%), Gaps = 14/152 (9%) Query 351 TLSTFFGVPLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDG 410 +L G+P +L LGAP + A TSA + A+ G+ +GA AL APAH +DG Sbjct 191 SLELNLGLPELLGLNALGAPVNAAMAAGTSATSFVGAVSTGDPVGAATALFGAPAHIVDG 250 Query 411 FLNSATVLDTPILVPTGLPSPLPPTVGITLHLPFDGILVPPHPVTATISFPGAPVPIPGF 470 FLN L T +L+ P + +T ++P +G+L P P+TAT + PG P Sbjct 251 FLNGHQTLSTQLLL---------PGLSVTANVPLNGLLGPLEPLTATATLPGLP-----L 296 Query 471 PTTVTVFGTPFMGMAPLLINYIPQQLALAIKP 502 T+TV G+ F G+ P L+ Y+P+ L A+ P Sbjct 297 LNTLTVTGSHFGGLVPTLLEYVPELLVTALGP 328 >gi|289443105|ref|ZP_06432849.1| PE-PGRS family protein [Mycobacterium tuberculosis T46] gi|289416024|gb|EFD13264.1| PE-PGRS family protein [Mycobacterium tuberculosis T46] Length=268 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 106/297 (36%), Positives = 145/297 (49%), Gaps = 44/297 (14%) Query 206 QIGFAQLFATTVGQGVTSVIAGWPNLAAELQLAFQQLLVGDYNAAVANLGKAMTNLLVTG 265 Q G+ QL T + G + LQ A L GD + AV ++ A+ + V+G Sbjct 16 QFGYGQLTLTALTDATRDFAIGLAGIPPSLQSALAALAAGDVSGAVTDVLGAVVKVFVSG 75 Query 266 FDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMTIPAQEAQYFTNLMPPSILRDMSQNF 325 D SD++ LLGP+GDLF I++IP MSQNF Sbjct 76 VDASDLS------------NILLLGPVGDLFPILSIPGA----------------MSQNF 107 Query 326 TNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPLVLTYATLGAPFASLNAIATSAETIE 385 TNV+ T+++ I +F I TT T FG+PL +T +G+P + A A S Sbjct 108 TNVVMTVTDTTI----AFSIDTTNLTGVMTFGLPLAMTLNAVGSPITTAIAFAESTTAFV 163 Query 386 QALLAGNYLGAVGALIDAPAHALDGFLNSATVLDTPILVPTGLPSPLPPTVGITLHLPFD 445 A+ AGN A AL+ APA+ +GFLN L P+ +PT +P +T+ +P Sbjct 164 SAVQAGNLQAAAAALVGAPANVANGFLNGEARL--PLALPTSATGGIP----VTVEVPVG 217 Query 446 GILVPPHPVTATISFPGAPVPIPGFPTTVTVFGTPFMGMAPLLINYIPQQLALAIKP 502 GIL P P AT A +P+ G P TVT+ GTP G+ P L+NY P QLA AI P Sbjct 218 GILAPLQPFQAT-----AVIPVIG-PVTVTLEGTPAGGIVPALVNYAPTQLAQAIAP 268 >gi|289745911|ref|ZP_06505289.1| PE-PGRS family protein [Mycobacterium tuberculosis 02_1987] gi|289686439|gb|EFD53927.1| PE-PGRS family protein [Mycobacterium tuberculosis 02_1987] Length=208 Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 92/246 (38%), Positives = 125/246 (51%), Gaps = 44/246 (17%) Query 257 AMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMTIPAQEAQYFTNLMPPS 316 A+ + V+G D SD+ + LLGP+GDLF I++IP Sbjct 7 AVVKVFVSGVDASDL------------SNILLLGPVGDLFPILSIPGA------------ 42 Query 317 ILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPLVLTYATLGAPFASLNA 376 MSQNFTNV+ T+++ I +F I TT T FG+PL +T +G+P + A Sbjct 43 ----MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGLPLAMTLNAVGSPITTAIA 94 Query 377 IATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDTPILVPTGLPSPLPPTV 436 A S A+ AGN A AL+ APA+ +GFLN L P+ +PT +P Sbjct 95 FAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL--PLALPTSATGGIP--- 149 Query 437 GITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFGTPFMGMAPLLINYIPQQL 496 +T+ +P GIL P P AT A +P+ G P TVT+ GTP G+ P L+NY P QL Sbjct 150 -VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEGTPAGGIVPALVNYAPTQL 202 Query 497 ALAIKP 502 A AI P Sbjct 203 AQAIAP 208 >gi|339294607|gb|AEJ46718.1| PE-PGRS family protein [Mycobacterium tuberculosis CCDC5079] Length=205 Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 92/246 (38%), Positives = 125/246 (51%), Gaps = 44/246 (17%) Query 257 AMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTIMTIPAQEAQYFTNLMPPS 316 A+ + V+G D SD+ + LLGP+GDLF I++IP Sbjct 4 AVVKVFVSGVDASDL------------SNILLLGPVGDLFPILSIPGA------------ 39 Query 317 ILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGVPLVLTYATLGAPFASLNA 376 MSQNFTNV+ T+++ I +F I TT T FG+PL +T +G+P + A Sbjct 40 ----MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGLPLAMTLNAVGSPITTAIA 91 Query 377 IATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVLDTPILVPTGLPSPLPPTV 436 A S A+ AGN A AL+ APA+ +GFLN L P+ +PT +P Sbjct 92 FAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL--PLALPTSATGGIP--- 146 Query 437 GITLHLPFDGILVPPHPVTATISFPGAPVPIPGFPTTVTVFGTPFMGMAPLLINYIPQQL 496 +T+ +P GIL P P AT A +P+ G P TVT+ GTP G+ P L+NY P QL Sbjct 147 -VTVEVPVGGILAPLQPFQAT-----AVIPVIG-PVTVTLEGTPAGGIVPALVNYAPTQL 199 Query 497 ALAIKP 502 A AI P Sbjct 200 AQAIAP 205 >gi|240168036|ref|ZP_04746695.1| PE-PGRS family protein [Mycobacterium kansasii ATCC 12478] Length=173 Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 46/82 (57%), Positives = 63/82 (77%), Gaps = 0/82 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFV+ +PE VA+AA DLA+IGST+ A AAAA PTTGL AA AD+VS ++ LF ++ Sbjct 1 MSFVIAMPEMVASAATDLASIGSTISSANAAAAVPTTGLLAAGADEVSATIASLFSQHAA 60 Query 61 EFQTVSNQLAAFHTEFVRTLNR 82 E+Q +S Q+ AFH++FV+TLN Sbjct 61 EYQALSAQVVAFHSQFVQTLNS 82 >gi|15839533|ref|NP_334570.1| PE family protein [Mycobacterium tuberculosis CDC1551] gi|254233542|ref|ZP_04926868.1| PE family protein [Mycobacterium tuberculosis C] gi|254366603|ref|ZP_04982647.1| PE family protein [Mycobacterium tuberculosis str. Haarlem] gi|13879644|gb|AAK44384.1| PE family protein [Mycobacterium tuberculosis CDC1551] gi|124603335|gb|EAY61610.1| PE family protein [Mycobacterium tuberculosis C] gi|134152115|gb|EBA44160.1| PE family protein [Mycobacterium tuberculosis str. Haarlem] gi|323717137|gb|EGB26346.1| PE family protein [Mycobacterium tuberculosis CDC1551A] Length=588 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/105 (54%), Positives = 72/105 (69%), Gaps = 0/105 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +S+V P +AAAA DLA IGS + +ATAA A PTTGLAAAAAD+VS A++ LFG YGQ Sbjct 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAG 105 +FQ +S Q+AAFH EF + L A++N E+ N L + AG Sbjct 99 QFQAISAQVAAFHNEFTQRLAAATNAFVNAEATNTSALVQEATAG 143 >gi|253797071|ref|YP_003030072.1| PE family protein [Mycobacterium tuberculosis KZN 1435] gi|289552402|ref|ZP_06441612.1| PE family protein [Mycobacterium tuberculosis KZN 605] gi|297632625|ref|ZP_06950405.1| PE family protein [Mycobacterium tuberculosis KZN 4207] 6 more sequence titles Length=588 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 57/105 (55%), Positives = 73/105 (70%), Gaps = 0/105 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +S+V P +AAAA DLA IGS + +ATAA A PTTGLAAAAAD+VS A++ LFG YGQ Sbjct 39 LSYVFAQPSVLAAAATDLAGIGSAINQATAAVAAPTTGLAAAAADEVSTALATLFGAYGQ 98 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAG 105 +FQ +S Q+AAFH EF + L A A++N E+ N L + AG Sbjct 99 QFQAISAQVAAFHNEFTQRLAAAAKAFVNAEATNTSALVQEATAG 143 >gi|308369494|ref|ZP_07666741.1| LOW QUALITY PROTEIN: PE-PGRS family protein [Mycobacterium tuberculosis SUMu002] gi|308327418|gb|EFP16269.1| LOW QUALITY PROTEIN: PE-PGRS family protein [Mycobacterium tuberculosis SUMu002] Length=467 Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 95/308 (31%), Positives = 134/308 (44%), Gaps = 86/308 (27%) Query 119 GAYGQLVANTATNLESLYGAWSANPFPFLRQIIANQQVYWQQIAAALANAVQNFPALVAN 178 G Y L+ANT NL S+ W A+P PFL+Q +ANQ Y Q AL +A ++F +A Sbjct 179 GPYEDLIANTVANLASIGNTWLADPAPFLQQYLANQFGYGQLTLTALTDATRDFAIGLAG 238 Query 179 LPAAIDAAVQQFLAFNAAYYIQQIISSQIGFAQLFATTVGQGVTSVIAGWPNLAAELQLA 238 +P ++ +A+Q L A V VT V+ Sbjct 239 IPPSLQSALQ----------------------ALAAGDVSGAVTDVLG------------ 264 Query 239 FQQLLVGDYNAAVANLGKAMTNLLVTGFDTSDVTIGTMGTTISVTAKPKLLGPLGDLFTI 298 A+ + V+G D SD++ LLGP+GDLF I Sbjct 265 ------------------AVVKVFVSGVDASDLS------------NILLLGPVGDLFPI 294 Query 299 MTIPAQEAQYFTNLMPPSILRDMSQNFTNVLTTLSNPNIQAVASFDIATTAGTLSTFFGV 358 ++IP MSQNFTNV+ T+++ I +F I TT T FG+ Sbjct 295 LSIPGA----------------MSQNFTNVVMTVTDTTI----AFSIDTTNLTGVMTFGL 334 Query 359 PLVLTYATLGAPFASLNAIATSAETIEQALLAGNYLGAVGALIDAPAHALDGFLNSATVL 418 PL +T +G+P + A A S A+ AGN A AL+ APA+ +GFLN L Sbjct 335 PLAMTLNAVGSPITTAIAFAESTTAFVSAVQAGNLQAAAAALVGAPANVANGFLNGEARL 394 Query 419 DTPILVPT 426 P+ +PT Sbjct 395 --PLALPT 400 >gi|240169119|ref|ZP_04747778.1| glycoside hydrolase family protein [Mycobacterium kansasii ATCC 12478] Length=819 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/94 (58%), Positives = 69/94 (74%), Gaps = 0/94 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +S+V VPEA+AAAA D+ IGSTL A AAAA PTTGL AA AD+VS A++ LF + + Sbjct 3 MSYVTAVPEALAAAARDITGIGSTLSAANAAAAAPTTGLLAAGADEVSAAIAGLFSSHAR 62 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESAN 94 E+QT+S Q AAFH +FV L A +YL+TE+AN Sbjct 63 EYQTLSAQAAAFHDQFVNALTASARSYLSTEAAN 96 >gi|183982475|ref|YP_001850766.1| PE-PGRS family protein [Mycobacterium marinum M] gi|183175801|gb|ACC40911.1| PE-PGRS family protein [Mycobacterium marinum M] Length=2407 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/132 (51%), Positives = 80/132 (61%), Gaps = 8/132 (6%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFV VPE V +AA DLA I S L EA A A PTT LAAA D+VS A++ LFG +GQ Sbjct 1 MSFVTAVPELVESAAQDLAGIRSALVEAAQAVAAPTTALAAAGEDEVSAAIAALFGTFGQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLNRGAAAYLNTESANGGQLFGQIEAGQRAVSAAAAAAPGGA 120 E+Q VS Q A+FH FVR L+ AA+Y+ E ANG L AG+ AAAA GG Sbjct 61 EYQAVSAQAASFHESFVRVLSGAAASYVEAEVANGAALL----AGES----AAAAVSGGF 112 Query 121 YGQLVANTATNL 132 G L A + L Sbjct 113 SGGLTAGLSAEL 124 >gi|297733265|ref|ZP_06962383.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN R506] Length=330 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/81 (57%), Positives = 62/81 (77%), Gaps = 0/81 (0%) Query 1 VSFVVTVPEAVAAAAGDLAAIGSTLREATAAAAGPTTGLAAAAADDVSIAVSQLFGRYGQ 60 +SFV+ VPE ++AAA DLA +GST+ A AAA+ PTTG+ AA ADDVS A++ LFG + Q Sbjct 1 MSFVIAVPEFLSAAATDLANLGSTISAANAAASIPTTGVLAAGADDVSAAIAALFGAHAQ 60 Query 61 EFQTVSNQLAAFHTEFVRTLN 81 +QT+S Q A FH +FV+TL+ Sbjct 61 AYQTISAQAATFHAQFVQTLS 81 Lambda K H 0.319 0.132 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1089650734560 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40