BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3819
Length=111
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610955|ref|NP_218336.1| hypothetical protein Rv3819 [Mycoba... 227 5e-58
gi|340628788|ref|YP_004747240.1| hypothetical protein MCAN_38381... 226 1e-57
gi|15843443|ref|NP_338480.1| hypothetical protein MT3927 [Mycoba... 224 2e-57
gi|240172628|ref|ZP_04751287.1| hypothetical protein MkanA1_2516... 172 2e-41
gi|41406301|ref|NP_959137.1| hypothetical protein MAP0203c [Myco... 167 6e-40
gi|296166951|ref|ZP_06849367.1| conserved hypothetical protein [... 166 1e-39
gi|183985350|ref|YP_001853641.1| hypothetical protein MMAR_5382 ... 166 1e-39
gi|118620018|ref|YP_908350.1| hypothetical protein MUL_5002 [Myc... 165 2e-39
gi|342860076|ref|ZP_08716728.1| hypothetical protein MCOL_14395 ... 160 6e-38
gi|254822667|ref|ZP_05227668.1| hypothetical protein MintA_22249... 158 3e-37
gi|108801990|ref|YP_642187.1| hypothetical protein Mmcs_5027 [My... 153 7e-36
gi|126437971|ref|YP_001073662.1| hypothetical protein Mjls_5408 ... 152 2e-35
gi|120406600|ref|YP_956429.1| hypothetical protein Mvan_5658 [My... 152 2e-35
gi|315446521|ref|YP_004079400.1| hypothetical protein Mspyr1_503... 150 8e-35
gi|145221743|ref|YP_001132421.1| hypothetical protein Mflv_1151 ... 148 2e-34
gi|118468781|ref|YP_890624.1| hypothetical protein MSMEG_6411 [M... 143 7e-33
gi|333992775|ref|YP_004525389.1| hypothetical protein JDM601_413... 139 2e-31
gi|240169096|ref|ZP_04747755.1| hypothetical protein MkanA1_0726... 79.0 2e-13
gi|226304048|ref|YP_002764006.1| hypothetical protein RER_05590 ... 62.0 3e-08
gi|229489840|ref|ZP_04383697.1| conserved hypothetical protein [... 60.8 6e-08
gi|220906411|ref|YP_002481722.1| hypothetical protein Cyan7425_0... 58.2 4e-07
gi|154151732|ref|YP_001405350.1| hypothetical protein Mboo_2193 ... 51.6 4e-05
gi|189500253|ref|YP_001959723.1| hypothetical protein Cphamn1_13... 48.1 5e-04
gi|161528778|ref|YP_001582604.1| hypothetical protein Nmar_1270 ... 38.1 0.45
>gi|15610955|ref|NP_218336.1| hypothetical protein Rv3819 [Mycobacterium tuberculosis H37Rv]
gi|31794993|ref|NP_857486.1| hypothetical protein Mb3849 [Mycobacterium bovis AF2122/97]
gi|121639736|ref|YP_979960.1| hypothetical protein BCG_3881 [Mycobacterium bovis BCG str. Pasteur
1173P2]
55 more sequence titles
Length=111
Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)
Query 1 MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL 60
MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL
Sbjct 1 MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL 60
Query 61 RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT 111
RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT
Sbjct 61 RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT 111
>gi|340628788|ref|YP_004747240.1| hypothetical protein MCAN_38381 [Mycobacterium canettii CIPT
140010059]
gi|340006978|emb|CCC46169.1| hypothetical protein MCAN_38381 [Mycobacterium canettii CIPT
140010059]
Length=111
Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 110/111 (99%), Positives = 110/111 (99%), Gaps = 0/111 (0%)
Query 1 MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL 60
MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGF MARFNIWGRPDL
Sbjct 1 MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFFMARFNIWGRPDL 60
Query 61 RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT 111
RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT
Sbjct 61 RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT 111
>gi|15843443|ref|NP_338480.1| hypothetical protein MT3927 [Mycobacterium tuberculosis CDC1551]
gi|148825026|ref|YP_001289780.1| hypothetical protein TBFG_13853 [Mycobacterium tuberculosis F11]
gi|254366363|ref|ZP_04982407.1| hypothetical protein TBHG_03757 [Mycobacterium tuberculosis str.
Haarlem]
20 more sequence titles
Length=110
Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%)
Query 2 MQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLR 61
MQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLR
Sbjct 1 MQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLR 60
Query 62 RWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT 111
RWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT
Sbjct 61 RWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT 110
>gi|240172628|ref|ZP_04751287.1| hypothetical protein MkanA1_25160 [Mycobacterium kansasii ATCC
12478]
Length=110
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/107 (80%), Positives = 91/107 (86%), Gaps = 0/107 (0%)
Query 1 MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL 60
MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVI LD IRGY+AE LG L RF IWG DL
Sbjct 1 MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIALDDIRGYKAEPLGLLTHRFRIWGSSDL 60
Query 61 RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLA 107
+RWLPLDV RPLKSTL+TLD+PG R KPA TP RP +F+ALLDELL
Sbjct 61 QRWLPLDVNRPLKSTLITLDIPGARWKPAFTPGRPDDFVALLDELLG 107
>gi|41406301|ref|NP_959137.1| hypothetical protein MAP0203c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118462553|ref|YP_879493.1| hypothetical protein MAV_0199 [Mycobacterium avium 104]
gi|254773258|ref|ZP_05214774.1| hypothetical protein MaviaA2_01051 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41394649|gb|AAS02520.1| hypothetical protein MAP_0203c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118163840|gb|ABK64737.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336461889|gb|EGO40744.1| hypothetical protein MAPs_26370 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=111
Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 80/107 (75%), Positives = 88/107 (83%), Gaps = 0/107 (0%)
Query 1 MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL 60
M + YDDG+VQLDRAA+TLRRYHFPSGT+KVI LD IRGY+AE LG M RF +WG DL
Sbjct 1 MNETYDDGLVQLDRAAITLRRYHFPSGTSKVIALDAIRGYKAEPLGIFMHRFRVWGSSDL 60
Query 61 RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLA 107
RRWLPLD+ RP KSTL+TLDVPG RP PA TP RP EF ALLDELLA
Sbjct 61 RRWLPLDIGRPFKSTLITLDVPGTRPAPAFTPARPDEFTALLDELLA 107
>gi|296166951|ref|ZP_06849367.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295897690|gb|EFG77280.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=114
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/105 (74%), Positives = 88/105 (84%), Gaps = 0/105 (0%)
Query 3 QFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRR 62
Q YDDG+VQLDRAA+TLRRYHFPSGT+KVIPL+ IRGY++E LG RF IWG D RR
Sbjct 7 QSYDDGLVQLDRAAITLRRYHFPSGTSKVIPLESIRGYKSEGLGLFTQRFRIWGSSDFRR 66
Query 63 WLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLA 107
WLPLD+ RP KSTL+TLDVPG+RP+PA TP RP EF ALLDELL+
Sbjct 67 WLPLDMSRPFKSTLITLDVPGIRPRPAFTPARPDEFTALLDELLS 111
>gi|183985350|ref|YP_001853641.1| hypothetical protein MMAR_5382 [Mycobacterium marinum M]
gi|183178676|gb|ACC43786.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=109
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/109 (75%), Positives = 91/109 (84%), Gaps = 0/109 (0%)
Query 2 MQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLR 61
M+FYDDGVVQLD AALTLRRYHFPSGTAK+I LD IRGY+AESLG L RF IWG DLR
Sbjct 1 MRFYDDGVVQLDGAALTLRRYHFPSGTAKIIALDTIRGYRAESLGLLTHRFRIWGSSDLR 60
Query 62 RWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHR 110
RWLP+D+ RPLKSTL+TLD+P R +PA TP RP +FIALLDELL+ R
Sbjct 61 RWLPMDINRPLKSTLITLDIPDARWQPAFTPARPDDFIALLDELLSDRR 109
>gi|118620018|ref|YP_908350.1| hypothetical protein MUL_5002 [Mycobacterium ulcerans Agy99]
gi|118572128|gb|ABL06879.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=110
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/110 (74%), Positives = 91/110 (83%), Gaps = 0/110 (0%)
Query 1 MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL 60
MM+FYDDGVVQLD AAL LRRYHFPSGTAK+I LD IRGY+AESLG L RF IWG DL
Sbjct 1 MMRFYDDGVVQLDGAALALRRYHFPSGTAKIIALDTIRGYRAESLGLLTHRFRIWGSSDL 60
Query 61 RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHR 110
RRWLP+D+ RPLKSTL+TLD+P R +PA TP RP +FIALLDELL+ R
Sbjct 61 RRWLPMDMNRPLKSTLITLDIPDARWQPAFTPARPDDFIALLDELLSDRR 110
>gi|342860076|ref|ZP_08716728.1| hypothetical protein MCOL_14395 [Mycobacterium colombiense CECT
3035]
gi|342132454|gb|EGT85683.1| hypothetical protein MCOL_14395 [Mycobacterium colombiense CECT
3035]
Length=110
Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/106 (73%), Positives = 83/106 (79%), Gaps = 0/106 (0%)
Query 1 MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL 60
M YDDG+VQLDRAA+TLRRYHFPSGT+KVI LD IRGY+AE LG RF IWG D
Sbjct 1 MNDSYDDGLVQLDRAAITLRRYHFPSGTSKVITLDAIRGYKAEDLGIFTQRFRIWGSSDF 60
Query 61 RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELL 106
RRWLPLD+ RP KSTL+TLDVPG RP PA TP RP EF LLDELL
Sbjct 61 RRWLPLDIGRPFKSTLITLDVPGTRPSPAFTPARPDEFTDLLDELL 106
>gi|254822667|ref|ZP_05227668.1| hypothetical protein MintA_22249 [Mycobacterium intracellulare
ATCC 13950]
Length=116
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/103 (74%), Positives = 83/103 (81%), Gaps = 0/103 (0%)
Query 5 YDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRRWL 64
YDDG+VQLDRAA+TLRRYHFPSGT+KVI L IRGY+AESLG R IWG D RRWL
Sbjct 11 YDDGLVQLDRAAITLRRYHFPSGTSKVIALGSIRGYKAESLGLFTQRLRIWGSSDFRRWL 70
Query 65 PLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLA 107
PLD+ RPL+STL+TLDVPG P PA TP RP EF ALLDELLA
Sbjct 71 PLDIRRPLRSTLITLDVPGTWPSPAFTPARPDEFTALLDELLA 113
>gi|108801990|ref|YP_642187.1| hypothetical protein Mmcs_5027 [Mycobacterium sp. MCS]
gi|119871142|ref|YP_941094.1| hypothetical protein Mkms_5115 [Mycobacterium sp. KMS]
gi|108772409|gb|ABG11131.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119697231|gb|ABL94304.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=111
Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/104 (71%), Positives = 84/104 (81%), Gaps = 0/104 (0%)
Query 3 QFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRR 62
Q+YDDG +QLD+ A+TLRRYHFPSGT+KVIPL Q+RGY AE LG M RF +WG DLRR
Sbjct 6 QYYDDGQIQLDKQAITLRRYHFPSGTSKVIPLQQVRGYTAEPLGSFMHRFRMWGSSDLRR 65
Query 63 WLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELL 106
WLPLD+ RP KSTLVTLDVPG R +PA TP P+ F A+LDELL
Sbjct 66 WLPLDMRRPFKSTLVTLDVPGNRWRPAFTPADPERFTAMLDELL 109
>gi|126437971|ref|YP_001073662.1| hypothetical protein Mjls_5408 [Mycobacterium sp. JLS]
gi|126237771|gb|ABO01172.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=111
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/104 (70%), Positives = 84/104 (81%), Gaps = 0/104 (0%)
Query 3 QFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRR 62
Q+YDDG +QLD+ A+TLRRYHFPSGT+KVIPL Q+RGY AE LG + RF +WG DLRR
Sbjct 6 QYYDDGQIQLDKQAITLRRYHFPSGTSKVIPLQQVRGYTAEPLGSFVHRFRMWGSSDLRR 65
Query 63 WLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELL 106
WLPLD+ RP KSTLVTLDVPG R +PA TP P+ F A+LDELL
Sbjct 66 WLPLDMRRPFKSTLVTLDVPGNRWRPAFTPADPERFTAMLDELL 109
>gi|120406600|ref|YP_956429.1| hypothetical protein Mvan_5658 [Mycobacterium vanbaalenii PYR-1]
gi|119959418|gb|ABM16423.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=115
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/104 (68%), Positives = 85/104 (82%), Gaps = 0/104 (0%)
Query 3 QFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRR 62
+FYDDG +QLDR ALTLRRYHFPSGT+K+IPL I GY+ ++LG + RF +WG D RR
Sbjct 9 RFYDDGRIQLDREALTLRRYHFPSGTSKIIPLRDILGYRVQALGPFVHRFRLWGSSDFRR 68
Query 63 WLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELL 106
WLPLD+YRPL+ST+VTLDV G+R PACTP RP EF+ +LDELL
Sbjct 69 WLPLDMYRPLRSTMVTLDVAGVRLHPACTPARPDEFVQVLDELL 112
>gi|315446521|ref|YP_004079400.1| hypothetical protein Mspyr1_50360 [Mycobacterium sp. Spyr1]
gi|315264824|gb|ADU01566.1| hypothetical protein Mspyr1_50360 [Mycobacterium sp. Spyr1]
Length=116
Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 68/108 (63%), Positives = 86/108 (80%), Gaps = 1/108 (0%)
Query 3 QFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRR 62
++YDDG++QLD+ ALTLRRYHFPSGT+K+IPL IRGY++ LG + RF +WG DLRR
Sbjct 10 RYYDDGLIQLDQEALTLRRYHFPSGTSKIIPLRDIRGYESSPLGLFVQRFRLWGSSDLRR 69
Query 63 WLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHR 110
WLPLD++RP KSTLVTLD+ G P PACTP RP EF+ LL++ L+ R
Sbjct 70 WLPLDIHRPTKSTLVTLDI-GTSPHPACTPARPAEFLELLEDFLSARR 116
>gi|145221743|ref|YP_001132421.1| hypothetical protein Mflv_1151 [Mycobacterium gilvum PYR-GCK]
gi|145214229|gb|ABP43633.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=116
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/108 (63%), Positives = 85/108 (79%), Gaps = 1/108 (0%)
Query 3 QFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRR 62
++YDDG++QLD+ ALTLRRYHFPSGT+K+IPL IR Y++ LG + RF +WG DLRR
Sbjct 10 RYYDDGLIQLDQEALTLRRYHFPSGTSKIIPLRDIRSYESSPLGLFVQRFRLWGSSDLRR 69
Query 63 WLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHR 110
WLPLD++RP KSTLVTLDV G P PACTP RP EF+ LL++ L+ R
Sbjct 70 WLPLDIHRPTKSTLVTLDV-GTSPHPACTPARPAEFLELLEDFLSARR 116
>gi|118468781|ref|YP_890624.1| hypothetical protein MSMEG_6411 [Mycobacterium smegmatis str.
MC2 155]
gi|118170068|gb|ABK70964.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=110
Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 73/104 (71%), Positives = 82/104 (79%), Gaps = 1/104 (0%)
Query 3 QFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRR 62
Q+YDDG+VQLDR A+TLRRYHFPSGT+KVIPL +RGY A L L+ RF +WG DLRR
Sbjct 6 QYYDDGLVQLDREAITLRRYHFPSGTSKVIPLRDVRGYTATGLD-LLHRFRLWGSADLRR 64
Query 63 WLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELL 106
WLPLDV RPL+STLVTLDV G R +PA TP P EF A LDELL
Sbjct 65 WLPLDVGRPLRSTLVTLDVAGTRWRPAFTPADPDEFTARLDELL 108
>gi|333992775|ref|YP_004525389.1| hypothetical protein JDM601_4135 [Mycobacterium sp. JDM601]
gi|333488743|gb|AEF38135.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=109
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/108 (67%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
Query 1 MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL 60
M YDDG+V LDR A+TLRRYHFPSGT+KVIPL IRGY+AE LG L RF +WG DL
Sbjct 1 MTGSYDDGLVALDRRAITLRRYHFPSGTSKVIPLSAIRGYRAEPLGMLTHRFRLWGSSDL 60
Query 61 RRWLPLDVYRPLKSTLVTLDVPGMR-PKPACTPTRPKEFIALLDELLA 107
RRWLPLDV RPL+STL+TLD+ P+PA TP P F LLDELLA
Sbjct 61 RRWLPLDVKRPLRSTLITLDLADAGWPQPAFTPVDPTAFQELLDELLA 108
>gi|240169096|ref|ZP_04747755.1| hypothetical protein MkanA1_07269 [Mycobacterium kansasii ATCC
12478]
Length=108
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/102 (41%), Positives = 56/102 (55%), Gaps = 1/102 (0%)
Query 1 MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL 60
M Y+D + LD +T+RRY+FP +K IP ++ E +G+ + +WG D
Sbjct 1 MTALYEDAGLLLDDDGITIRRYYFPFAGSKRIPYRDVKDVTTEQMGWASGKGRLWGATDP 60
Query 61 RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALL 102
R W PLD+ R K+TL+ LDV G R KP TP P I LL
Sbjct 61 RYWFPLDLKRGSKNTLLVLDV-GSRVKPCITPEDPDRVIGLL 101
>gi|226304048|ref|YP_002764006.1| hypothetical protein RER_05590 [Rhodococcus erythropolis PR4]
gi|226183163|dbj|BAH31267.1| hypothetical protein RER_05590 [Rhodococcus erythropolis PR4]
Length=133
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/88 (37%), Positives = 46/88 (53%), Gaps = 2/88 (2%)
Query 5 YDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRRWL 64
Y+D V++D +T+R Y+FP +K +P QI + +L R IWG D W
Sbjct 28 YEDRTVRIDDQGVTIRHYYFPF-VSKFVPYSQIESVDLGVMSWLSGRLRIWGTTDFSSWY 86
Query 65 PLDVYRPLKSTLVTLDVPGMRPKPACTP 92
LD+ RP K T V L + G R P+ +P
Sbjct 87 SLDLSRPWKETAVVLTLAG-RGAPSFSP 113
>gi|229489840|ref|ZP_04383697.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229323350|gb|EEN89114.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=114
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/88 (36%), Positives = 45/88 (52%), Gaps = 2/88 (2%)
Query 5 YDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRRWL 64
Y+D V++D +T+R Y+FP +K +P QI + +L R IWG D W
Sbjct 9 YEDRTVRIDDQGVTIRHYYFPF-VSKFVPYSQIESVDLGVMSWLSGRLRIWGTTDFSSWY 67
Query 65 PLDVYRPLKSTLVTLDVPGMRPKPACTP 92
LD+ RP K T V L + G P+ +P
Sbjct 68 SLDLSRPWKETAVVLTLAG-HGAPSFSP 94
>gi|220906411|ref|YP_002481722.1| hypothetical protein Cyan7425_0975 [Cyanothece sp. PCC 7425]
gi|219863022|gb|ACL43361.1| conserved hypothetical protein [Cyanothece sp. PCC 7425]
Length=109
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/104 (33%), Positives = 47/104 (46%), Gaps = 1/104 (0%)
Query 1 MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL 60
M Y+D V D ALT+ Y+FP G +K I IR + E+LG +WG
Sbjct 1 MTILYEDPHVICDEDALTINLYYFPLG-SKRISYHTIRSLKEETLGLFTGSGRLWGMGIT 59
Query 61 RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDE 104
W D+ RPLKS + ++ G K TP + +L E
Sbjct 60 PEWFHFDLQRPLKSKTIVIEEEGNWIKSVITPNDHDRVLQILRE 103
>gi|154151732|ref|YP_001405350.1| hypothetical protein Mboo_2193 [Candidatus Methanoregula boonei
6A8]
gi|154000284|gb|ABS56707.1| hypothetical protein Mboo_2193 [Methanoregula boonei 6A8]
Length=157
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/101 (30%), Positives = 44/101 (44%), Gaps = 0/101 (0%)
Query 5 YDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRRWL 64
Y D +V + +TL Y FP ++ IP I Q R+ IWG DLR W
Sbjct 38 YADRLVFITGDRITLAAYSFPFAGSRKIPFADIEQIQVLEPSLANGRWRIWGSGDLRTWF 97
Query 65 PLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDEL 105
PLD++RP + + + R + T I +L+ L
Sbjct 98 PLDIHRPSRDRIFVARLKTGRTRIGFTVEDSARVITVLENL 138
>gi|189500253|ref|YP_001959723.1| hypothetical protein Cphamn1_1312 [Chlorobium phaeobacteroides
BS1]
gi|189495694|gb|ACE04242.1| conserved hypothetical protein [Chlorobium phaeobacteroides BS1]
Length=116
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/72 (27%), Positives = 36/72 (50%), Gaps = 0/72 (0%)
Query 5 YDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRRWL 64
Y D ++ + +T R+Y+ P KV+ +D+I + + ++ + G D R W
Sbjct 10 YSDNLISITEKDITFRKYYLPFFRKKVVRIDEIEKISVDEPSLMTGKWRLHGTGDFRTWF 69
Query 65 PLDVYRPLKSTL 76
P+DV RP + +
Sbjct 70 PMDVRRPTRDRI 81
>gi|161528778|ref|YP_001582604.1| hypothetical protein Nmar_1270 [Nitrosopumilus maritimus SCM1]
gi|160340079|gb|ABX13166.1| conserved hypothetical protein [Nitrosopumilus maritimus SCM1]
Length=107
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/77 (24%), Positives = 31/77 (41%), Gaps = 1/77 (1%)
Query 5 YDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRRWL 64
Y D +Q+ + + + P G K + L ++ + +G R I G + R W
Sbjct 6 YSDKHIQIFEDKIRFKSWCLPWG-KKDVKLSHVKKISEKKMGLFSGRLRISGSNNFRDWF 64
Query 65 PLDVYRPLKSTLVTLDV 81
D RP K + L+
Sbjct 65 HFDATRPTKKKAIVLET 81
Lambda K H
0.327 0.143 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128534824512
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40