BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3819

Length=111
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610955|ref|NP_218336.1|  hypothetical protein Rv3819 [Mycoba...   227    5e-58
gi|340628788|ref|YP_004747240.1|  hypothetical protein MCAN_38381...   226    1e-57
gi|15843443|ref|NP_338480.1|  hypothetical protein MT3927 [Mycoba...   224    2e-57
gi|240172628|ref|ZP_04751287.1|  hypothetical protein MkanA1_2516...   172    2e-41
gi|41406301|ref|NP_959137.1|  hypothetical protein MAP0203c [Myco...   167    6e-40
gi|296166951|ref|ZP_06849367.1|  conserved hypothetical protein [...   166    1e-39
gi|183985350|ref|YP_001853641.1|  hypothetical protein MMAR_5382 ...   166    1e-39
gi|118620018|ref|YP_908350.1|  hypothetical protein MUL_5002 [Myc...   165    2e-39
gi|342860076|ref|ZP_08716728.1|  hypothetical protein MCOL_14395 ...   160    6e-38
gi|254822667|ref|ZP_05227668.1|  hypothetical protein MintA_22249...   158    3e-37
gi|108801990|ref|YP_642187.1|  hypothetical protein Mmcs_5027 [My...   153    7e-36
gi|126437971|ref|YP_001073662.1|  hypothetical protein Mjls_5408 ...   152    2e-35
gi|120406600|ref|YP_956429.1|  hypothetical protein Mvan_5658 [My...   152    2e-35
gi|315446521|ref|YP_004079400.1|  hypothetical protein Mspyr1_503...   150    8e-35
gi|145221743|ref|YP_001132421.1|  hypothetical protein Mflv_1151 ...   148    2e-34
gi|118468781|ref|YP_890624.1|  hypothetical protein MSMEG_6411 [M...   143    7e-33
gi|333992775|ref|YP_004525389.1|  hypothetical protein JDM601_413...   139    2e-31
gi|240169096|ref|ZP_04747755.1|  hypothetical protein MkanA1_0726...  79.0    2e-13
gi|226304048|ref|YP_002764006.1|  hypothetical protein RER_05590 ...  62.0    3e-08
gi|229489840|ref|ZP_04383697.1|  conserved hypothetical protein [...  60.8    6e-08
gi|220906411|ref|YP_002481722.1|  hypothetical protein Cyan7425_0...  58.2    4e-07
gi|154151732|ref|YP_001405350.1|  hypothetical protein Mboo_2193 ...  51.6    4e-05
gi|189500253|ref|YP_001959723.1|  hypothetical protein Cphamn1_13...  48.1    5e-04
gi|161528778|ref|YP_001582604.1|  hypothetical protein Nmar_1270 ...  38.1    0.45 


>gi|15610955|ref|NP_218336.1| hypothetical protein Rv3819 [Mycobacterium tuberculosis H37Rv]
 gi|31794993|ref|NP_857486.1| hypothetical protein Mb3849 [Mycobacterium bovis AF2122/97]
 gi|121639736|ref|YP_979960.1| hypothetical protein BCG_3881 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 55 more sequence titles
 Length=111

 Score =  227 bits (578),  Expect = 5e-58, Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)

Query  1    MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL  60
            MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL
Sbjct  1    MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL  60

Query  61   RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT  111
            RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT
Sbjct  61   RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT  111


>gi|340628788|ref|YP_004747240.1| hypothetical protein MCAN_38381 [Mycobacterium canettii CIPT 
140010059]
 gi|340006978|emb|CCC46169.1| hypothetical protein MCAN_38381 [Mycobacterium canettii CIPT 
140010059]
Length=111

 Score =  226 bits (575),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 110/111 (99%), Positives = 110/111 (99%), Gaps = 0/111 (0%)

Query  1    MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL  60
            MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGF MARFNIWGRPDL
Sbjct  1    MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFFMARFNIWGRPDL  60

Query  61   RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT  111
            RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT
Sbjct  61   RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT  111


>gi|15843443|ref|NP_338480.1| hypothetical protein MT3927 [Mycobacterium tuberculosis CDC1551]
 gi|148825026|ref|YP_001289780.1| hypothetical protein TBFG_13853 [Mycobacterium tuberculosis F11]
 gi|254366363|ref|ZP_04982407.1| hypothetical protein TBHG_03757 [Mycobacterium tuberculosis str. 
Haarlem]
 20 more sequence titles
 Length=110

 Score =  224 bits (572),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%)

Query  2    MQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLR  61
            MQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLR
Sbjct  1    MQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLR  60

Query  62   RWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT  111
            RWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT
Sbjct  61   RWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHRT  110


>gi|240172628|ref|ZP_04751287.1| hypothetical protein MkanA1_25160 [Mycobacterium kansasii ATCC 
12478]
Length=110

 Score =  172 bits (436),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 85/107 (80%), Positives = 91/107 (86%), Gaps = 0/107 (0%)

Query  1    MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL  60
            MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVI LD IRGY+AE LG L  RF IWG  DL
Sbjct  1    MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIALDDIRGYKAEPLGLLTHRFRIWGSSDL  60

Query  61   RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLA  107
            +RWLPLDV RPLKSTL+TLD+PG R KPA TP RP +F+ALLDELL 
Sbjct  61   QRWLPLDVNRPLKSTLITLDIPGARWKPAFTPGRPDDFVALLDELLG  107


>gi|41406301|ref|NP_959137.1| hypothetical protein MAP0203c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118462553|ref|YP_879493.1| hypothetical protein MAV_0199 [Mycobacterium avium 104]
 gi|254773258|ref|ZP_05214774.1| hypothetical protein MaviaA2_01051 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41394649|gb|AAS02520.1| hypothetical protein MAP_0203c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118163840|gb|ABK64737.1| conserved hypothetical protein [Mycobacterium avium 104]
 gi|336461889|gb|EGO40744.1| hypothetical protein MAPs_26370 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=111

 Score =  167 bits (422),  Expect = 6e-40, Method: Compositional matrix adjust.
 Identities = 80/107 (75%), Positives = 88/107 (83%), Gaps = 0/107 (0%)

Query  1    MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL  60
            M + YDDG+VQLDRAA+TLRRYHFPSGT+KVI LD IRGY+AE LG  M RF +WG  DL
Sbjct  1    MNETYDDGLVQLDRAAITLRRYHFPSGTSKVIALDAIRGYKAEPLGIFMHRFRVWGSSDL  60

Query  61   RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLA  107
            RRWLPLD+ RP KSTL+TLDVPG RP PA TP RP EF ALLDELLA
Sbjct  61   RRWLPLDIGRPFKSTLITLDVPGTRPAPAFTPARPDEFTALLDELLA  107


>gi|296166951|ref|ZP_06849367.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897690|gb|EFG77280.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=114

 Score =  166 bits (419),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 77/105 (74%), Positives = 88/105 (84%), Gaps = 0/105 (0%)

Query  3    QFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRR  62
            Q YDDG+VQLDRAA+TLRRYHFPSGT+KVIPL+ IRGY++E LG    RF IWG  D RR
Sbjct  7    QSYDDGLVQLDRAAITLRRYHFPSGTSKVIPLESIRGYKSEGLGLFTQRFRIWGSSDFRR  66

Query  63   WLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLA  107
            WLPLD+ RP KSTL+TLDVPG+RP+PA TP RP EF ALLDELL+
Sbjct  67   WLPLDMSRPFKSTLITLDVPGIRPRPAFTPARPDEFTALLDELLS  111


>gi|183985350|ref|YP_001853641.1| hypothetical protein MMAR_5382 [Mycobacterium marinum M]
 gi|183178676|gb|ACC43786.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=109

 Score =  166 bits (419),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 81/109 (75%), Positives = 91/109 (84%), Gaps = 0/109 (0%)

Query  2    MQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLR  61
            M+FYDDGVVQLD AALTLRRYHFPSGTAK+I LD IRGY+AESLG L  RF IWG  DLR
Sbjct  1    MRFYDDGVVQLDGAALTLRRYHFPSGTAKIIALDTIRGYRAESLGLLTHRFRIWGSSDLR  60

Query  62   RWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHR  110
            RWLP+D+ RPLKSTL+TLD+P  R +PA TP RP +FIALLDELL+  R
Sbjct  61   RWLPMDINRPLKSTLITLDIPDARWQPAFTPARPDDFIALLDELLSDRR  109


>gi|118620018|ref|YP_908350.1| hypothetical protein MUL_5002 [Mycobacterium ulcerans Agy99]
 gi|118572128|gb|ABL06879.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=110

 Score =  165 bits (417),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 81/110 (74%), Positives = 91/110 (83%), Gaps = 0/110 (0%)

Query  1    MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL  60
            MM+FYDDGVVQLD AAL LRRYHFPSGTAK+I LD IRGY+AESLG L  RF IWG  DL
Sbjct  1    MMRFYDDGVVQLDGAALALRRYHFPSGTAKIIALDTIRGYRAESLGLLTHRFRIWGSSDL  60

Query  61   RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHR  110
            RRWLP+D+ RPLKSTL+TLD+P  R +PA TP RP +FIALLDELL+  R
Sbjct  61   RRWLPMDMNRPLKSTLITLDIPDARWQPAFTPARPDDFIALLDELLSDRR  110


>gi|342860076|ref|ZP_08716728.1| hypothetical protein MCOL_14395 [Mycobacterium colombiense CECT 
3035]
 gi|342132454|gb|EGT85683.1| hypothetical protein MCOL_14395 [Mycobacterium colombiense CECT 
3035]
Length=110

 Score =  160 bits (405),  Expect = 6e-38, Method: Compositional matrix adjust.
 Identities = 77/106 (73%), Positives = 83/106 (79%), Gaps = 0/106 (0%)

Query  1    MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL  60
            M   YDDG+VQLDRAA+TLRRYHFPSGT+KVI LD IRGY+AE LG    RF IWG  D 
Sbjct  1    MNDSYDDGLVQLDRAAITLRRYHFPSGTSKVITLDAIRGYKAEDLGIFTQRFRIWGSSDF  60

Query  61   RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELL  106
            RRWLPLD+ RP KSTL+TLDVPG RP PA TP RP EF  LLDELL
Sbjct  61   RRWLPLDIGRPFKSTLITLDVPGTRPSPAFTPARPDEFTDLLDELL  106


>gi|254822667|ref|ZP_05227668.1| hypothetical protein MintA_22249 [Mycobacterium intracellulare 
ATCC 13950]
Length=116

 Score =  158 bits (399),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 76/103 (74%), Positives = 83/103 (81%), Gaps = 0/103 (0%)

Query  5    YDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRRWL  64
            YDDG+VQLDRAA+TLRRYHFPSGT+KVI L  IRGY+AESLG    R  IWG  D RRWL
Sbjct  11   YDDGLVQLDRAAITLRRYHFPSGTSKVIALGSIRGYKAESLGLFTQRLRIWGSSDFRRWL  70

Query  65   PLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLA  107
            PLD+ RPL+STL+TLDVPG  P PA TP RP EF ALLDELLA
Sbjct  71   PLDIRRPLRSTLITLDVPGTWPSPAFTPARPDEFTALLDELLA  113


>gi|108801990|ref|YP_642187.1| hypothetical protein Mmcs_5027 [Mycobacterium sp. MCS]
 gi|119871142|ref|YP_941094.1| hypothetical protein Mkms_5115 [Mycobacterium sp. KMS]
 gi|108772409|gb|ABG11131.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119697231|gb|ABL94304.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=111

 Score =  153 bits (387),  Expect = 7e-36, Method: Compositional matrix adjust.
 Identities = 73/104 (71%), Positives = 84/104 (81%), Gaps = 0/104 (0%)

Query  3    QFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRR  62
            Q+YDDG +QLD+ A+TLRRYHFPSGT+KVIPL Q+RGY AE LG  M RF +WG  DLRR
Sbjct  6    QYYDDGQIQLDKQAITLRRYHFPSGTSKVIPLQQVRGYTAEPLGSFMHRFRMWGSSDLRR  65

Query  63   WLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELL  106
            WLPLD+ RP KSTLVTLDVPG R +PA TP  P+ F A+LDELL
Sbjct  66   WLPLDMRRPFKSTLVTLDVPGNRWRPAFTPADPERFTAMLDELL  109


>gi|126437971|ref|YP_001073662.1| hypothetical protein Mjls_5408 [Mycobacterium sp. JLS]
 gi|126237771|gb|ABO01172.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=111

 Score =  152 bits (383),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 72/104 (70%), Positives = 84/104 (81%), Gaps = 0/104 (0%)

Query  3    QFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRR  62
            Q+YDDG +QLD+ A+TLRRYHFPSGT+KVIPL Q+RGY AE LG  + RF +WG  DLRR
Sbjct  6    QYYDDGQIQLDKQAITLRRYHFPSGTSKVIPLQQVRGYTAEPLGSFVHRFRMWGSSDLRR  65

Query  63   WLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELL  106
            WLPLD+ RP KSTLVTLDVPG R +PA TP  P+ F A+LDELL
Sbjct  66   WLPLDMRRPFKSTLVTLDVPGNRWRPAFTPADPERFTAMLDELL  109


>gi|120406600|ref|YP_956429.1| hypothetical protein Mvan_5658 [Mycobacterium vanbaalenii PYR-1]
 gi|119959418|gb|ABM16423.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=115

 Score =  152 bits (383),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 70/104 (68%), Positives = 85/104 (82%), Gaps = 0/104 (0%)

Query  3    QFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRR  62
            +FYDDG +QLDR ALTLRRYHFPSGT+K+IPL  I GY+ ++LG  + RF +WG  D RR
Sbjct  9    RFYDDGRIQLDREALTLRRYHFPSGTSKIIPLRDILGYRVQALGPFVHRFRLWGSSDFRR  68

Query  63   WLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELL  106
            WLPLD+YRPL+ST+VTLDV G+R  PACTP RP EF+ +LDELL
Sbjct  69   WLPLDMYRPLRSTMVTLDVAGVRLHPACTPARPDEFVQVLDELL  112


>gi|315446521|ref|YP_004079400.1| hypothetical protein Mspyr1_50360 [Mycobacterium sp. Spyr1]
 gi|315264824|gb|ADU01566.1| hypothetical protein Mspyr1_50360 [Mycobacterium sp. Spyr1]
Length=116

 Score =  150 bits (378),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 68/108 (63%), Positives = 86/108 (80%), Gaps = 1/108 (0%)

Query  3    QFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRR  62
            ++YDDG++QLD+ ALTLRRYHFPSGT+K+IPL  IRGY++  LG  + RF +WG  DLRR
Sbjct  10   RYYDDGLIQLDQEALTLRRYHFPSGTSKIIPLRDIRGYESSPLGLFVQRFRLWGSSDLRR  69

Query  63   WLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHR  110
            WLPLD++RP KSTLVTLD+ G  P PACTP RP EF+ LL++ L+  R
Sbjct  70   WLPLDIHRPTKSTLVTLDI-GTSPHPACTPARPAEFLELLEDFLSARR  116


>gi|145221743|ref|YP_001132421.1| hypothetical protein Mflv_1151 [Mycobacterium gilvum PYR-GCK]
 gi|145214229|gb|ABP43633.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=116

 Score =  148 bits (374),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 68/108 (63%), Positives = 85/108 (79%), Gaps = 1/108 (0%)

Query  3    QFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRR  62
            ++YDDG++QLD+ ALTLRRYHFPSGT+K+IPL  IR Y++  LG  + RF +WG  DLRR
Sbjct  10   RYYDDGLIQLDQEALTLRRYHFPSGTSKIIPLRDIRSYESSPLGLFVQRFRLWGSSDLRR  69

Query  63   WLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELLALHR  110
            WLPLD++RP KSTLVTLDV G  P PACTP RP EF+ LL++ L+  R
Sbjct  70   WLPLDIHRPTKSTLVTLDV-GTSPHPACTPARPAEFLELLEDFLSARR  116


>gi|118468781|ref|YP_890624.1| hypothetical protein MSMEG_6411 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118170068|gb|ABK70964.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=110

 Score =  143 bits (361),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 73/104 (71%), Positives = 82/104 (79%), Gaps = 1/104 (0%)

Query  3    QFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRR  62
            Q+YDDG+VQLDR A+TLRRYHFPSGT+KVIPL  +RGY A  L  L+ RF +WG  DLRR
Sbjct  6    QYYDDGLVQLDREAITLRRYHFPSGTSKVIPLRDVRGYTATGLD-LLHRFRLWGSADLRR  64

Query  63   WLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDELL  106
            WLPLDV RPL+STLVTLDV G R +PA TP  P EF A LDELL
Sbjct  65   WLPLDVGRPLRSTLVTLDVAGTRWRPAFTPADPDEFTARLDELL  108


>gi|333992775|ref|YP_004525389.1| hypothetical protein JDM601_4135 [Mycobacterium sp. JDM601]
 gi|333488743|gb|AEF38135.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=109

 Score =  139 bits (349),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 72/108 (67%), Positives = 81/108 (75%), Gaps = 1/108 (0%)

Query  1    MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL  60
            M   YDDG+V LDR A+TLRRYHFPSGT+KVIPL  IRGY+AE LG L  RF +WG  DL
Sbjct  1    MTGSYDDGLVALDRRAITLRRYHFPSGTSKVIPLSAIRGYRAEPLGMLTHRFRLWGSSDL  60

Query  61   RRWLPLDVYRPLKSTLVTLDVPGMR-PKPACTPTRPKEFIALLDELLA  107
            RRWLPLDV RPL+STL+TLD+     P+PA TP  P  F  LLDELLA
Sbjct  61   RRWLPLDVKRPLRSTLITLDLADAGWPQPAFTPVDPTAFQELLDELLA  108


>gi|240169096|ref|ZP_04747755.1| hypothetical protein MkanA1_07269 [Mycobacterium kansasii ATCC 
12478]
Length=108

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 41/102 (41%), Positives = 56/102 (55%), Gaps = 1/102 (0%)

Query  1    MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL  60
            M   Y+D  + LD   +T+RRY+FP   +K IP   ++    E +G+   +  +WG  D 
Sbjct  1    MTALYEDAGLLLDDDGITIRRYYFPFAGSKRIPYRDVKDVTTEQMGWASGKGRLWGATDP  60

Query  61   RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALL  102
            R W PLD+ R  K+TL+ LDV G R KP  TP  P   I LL
Sbjct  61   RYWFPLDLKRGSKNTLLVLDV-GSRVKPCITPEDPDRVIGLL  101


>gi|226304048|ref|YP_002764006.1| hypothetical protein RER_05590 [Rhodococcus erythropolis PR4]
 gi|226183163|dbj|BAH31267.1| hypothetical protein RER_05590 [Rhodococcus erythropolis PR4]
Length=133

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 32/88 (37%), Positives = 46/88 (53%), Gaps = 2/88 (2%)

Query  5    YDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRRWL  64
            Y+D  V++D   +T+R Y+FP   +K +P  QI       + +L  R  IWG  D   W 
Sbjct  28   YEDRTVRIDDQGVTIRHYYFPF-VSKFVPYSQIESVDLGVMSWLSGRLRIWGTTDFSSWY  86

Query  65   PLDVYRPLKSTLVTLDVPGMRPKPACTP  92
             LD+ RP K T V L + G R  P+ +P
Sbjct  87   SLDLSRPWKETAVVLTLAG-RGAPSFSP  113


>gi|229489840|ref|ZP_04383697.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229323350|gb|EEN89114.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=114

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 31/88 (36%), Positives = 45/88 (52%), Gaps = 2/88 (2%)

Query  5   YDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRRWL  64
           Y+D  V++D   +T+R Y+FP   +K +P  QI       + +L  R  IWG  D   W 
Sbjct  9   YEDRTVRIDDQGVTIRHYYFPF-VSKFVPYSQIESVDLGVMSWLSGRLRIWGTTDFSSWY  67

Query  65  PLDVYRPLKSTLVTLDVPGMRPKPACTP  92
            LD+ RP K T V L + G    P+ +P
Sbjct  68  SLDLSRPWKETAVVLTLAG-HGAPSFSP  94


>gi|220906411|ref|YP_002481722.1| hypothetical protein Cyan7425_0975 [Cyanothece sp. PCC 7425]
 gi|219863022|gb|ACL43361.1| conserved hypothetical protein [Cyanothece sp. PCC 7425]
Length=109

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 34/104 (33%), Positives = 47/104 (46%), Gaps = 1/104 (0%)

Query  1    MMQFYDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDL  60
            M   Y+D  V  D  ALT+  Y+FP G +K I    IR  + E+LG       +WG    
Sbjct  1    MTILYEDPHVICDEDALTINLYYFPLG-SKRISYHTIRSLKEETLGLFTGSGRLWGMGIT  59

Query  61   RRWLPLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDE  104
              W   D+ RPLKS  + ++  G   K   TP      + +L E
Sbjct  60   PEWFHFDLQRPLKSKTIVIEEEGNWIKSVITPNDHDRVLQILRE  103


>gi|154151732|ref|YP_001405350.1| hypothetical protein Mboo_2193 [Candidatus Methanoregula boonei 
6A8]
 gi|154000284|gb|ABS56707.1| hypothetical protein Mboo_2193 [Methanoregula boonei 6A8]
Length=157

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 30/101 (30%), Positives = 44/101 (44%), Gaps = 0/101 (0%)

Query  5    YDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRRWL  64
            Y D +V +    +TL  Y FP   ++ IP   I   Q         R+ IWG  DLR W 
Sbjct  38   YADRLVFITGDRITLAAYSFPFAGSRKIPFADIEQIQVLEPSLANGRWRIWGSGDLRTWF  97

Query  65   PLDVYRPLKSTLVTLDVPGMRPKPACTPTRPKEFIALLDEL  105
            PLD++RP +  +    +   R +   T       I +L+ L
Sbjct  98   PLDIHRPSRDRIFVARLKTGRTRIGFTVEDSARVITVLENL  138


>gi|189500253|ref|YP_001959723.1| hypothetical protein Cphamn1_1312 [Chlorobium phaeobacteroides 
BS1]
 gi|189495694|gb|ACE04242.1| conserved hypothetical protein [Chlorobium phaeobacteroides BS1]
Length=116

 Score = 48.1 bits (113),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 19/72 (27%), Positives = 36/72 (50%), Gaps = 0/72 (0%)

Query  5   YDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRRWL  64
           Y D ++ +    +T R+Y+ P    KV+ +D+I     +    +  ++ + G  D R W 
Sbjct  10  YSDNLISITEKDITFRKYYLPFFRKKVVRIDEIEKISVDEPSLMTGKWRLHGTGDFRTWF  69

Query  65  PLDVYRPLKSTL  76
           P+DV RP +  +
Sbjct  70  PMDVRRPTRDRI  81


>gi|161528778|ref|YP_001582604.1| hypothetical protein Nmar_1270 [Nitrosopumilus maritimus SCM1]
 gi|160340079|gb|ABX13166.1| conserved hypothetical protein [Nitrosopumilus maritimus SCM1]
Length=107

 Score = 38.1 bits (87),  Expect = 0.45, Method: Compositional matrix adjust.
 Identities = 18/77 (24%), Positives = 31/77 (41%), Gaps = 1/77 (1%)

Query  5   YDDGVVQLDRAALTLRRYHFPSGTAKVIPLDQIRGYQAESLGFLMARFNIWGRPDLRRWL  64
           Y D  +Q+    +  + +  P G  K + L  ++    + +G    R  I G  + R W 
Sbjct  6   YSDKHIQIFEDKIRFKSWCLPWG-KKDVKLSHVKKISEKKMGLFSGRLRISGSNNFRDWF  64

Query  65  PLDVYRPLKSTLVTLDV  81
             D  RP K   + L+ 
Sbjct  65  HFDATRPTKKKAIVLET  81



Lambda     K      H
   0.327    0.143    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128534824512


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40