BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3821
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
gi|254233310|ref|ZP_04926636.1| hypothetical protein TBCG_03747 ... 464 4e-129
gi|15610957|ref|NP_218338.1| integral membrane protein [Mycobact... 463 8e-129
gi|31794995|ref|NP_857488.1| integral membrane protein [Mycobact... 460 9e-128
gi|289445422|ref|ZP_06435166.1| conserved membrane protein [Myco... 460 1e-127
gi|340628790|ref|YP_004747242.1| putative integral membrane prot... 458 2e-127
gi|296166953|ref|ZP_06849369.1| GAP family peptidoglyclipid addr... 248 6e-64
gi|342860078|ref|ZP_08716730.1| putative integral membrane prote... 247 1e-63
gi|120401303|ref|YP_951132.1| hypothetical protein Mvan_0277 [My... 178 7e-43
gi|118470074|ref|YP_884826.1| hypothetical protein MSMEG_0413 [M... 169 3e-40
gi|85541019|gb|ABC70856.1| Gap-like [Mycobacterium smegmatis str... 169 3e-40
gi|15827631|ref|NP_301894.1| hypothetical protein ML1233 [Mycoba... 169 4e-40
gi|169628031|ref|YP_001701680.1| hypothetical protein MAB_0934 [... 166 3e-39
gi|342857526|ref|ZP_08714182.1| hypothetical protein MCOL_01580 ... 160 1e-37
gi|108797229|ref|YP_637426.1| hypothetical protein Mmcs_0249 [My... 160 2e-37
gi|169630228|ref|YP_001703877.1| hypothetical protein MAB_3146c ... 158 8e-37
gi|146760141|emb|CAJ77662.1| gap like protein [Mycobacterium che... 157 1e-36
gi|41408334|ref|NP_961170.1| hypothetical protein MAP2236 [Mycob... 148 6e-34
gi|254774574|ref|ZP_05216090.1| hypothetical protein MaviaA2_078... 146 3e-33
gi|145221004|ref|YP_001131682.1| hypothetical protein Mflv_0400 ... 137 1e-30
gi|254818761|ref|ZP_05223762.1| hypothetical protein MintA_02494... 128 7e-28
gi|126435681|ref|YP_001071372.1| hypothetical protein Mjls_3102 ... 120 1e-25
gi|15608655|ref|NP_216033.1| hypothetical protein Rv1517 [Mycoba... 120 1e-25
gi|289753603|ref|ZP_06512981.1| conserved hypothetical protein [... 120 2e-25
gi|15840983|ref|NP_336020.1| hypothetical protein MT1567 [Mycoba... 120 2e-25
gi|339294492|gb|AEJ46603.1| hypothetical protein CCDC5079_1413 [... 113 2e-23
gi|308373171|ref|ZP_07431269.2| conserved membrane protein [Myco... 110 2e-22
gi|336460210|gb|EGO39114.1| Protein of unknown function (DUF2910... 103 2e-20
gi|41409859|ref|NP_962695.1| hypothetical protein MAP3761c [Myco... 103 3e-20
gi|240167921|ref|ZP_04746580.1| hypothetical protein MkanA1_0130... 102 6e-20
gi|183983638|ref|YP_001851929.1| hypothetical protein MMAR_3658 ... 97.4 1e-18
gi|183982365|ref|YP_001850656.1| hypothetical protein MMAR_2352 ... 94.4 1e-17
gi|240173293|ref|ZP_04751951.1| hypothetical protein MkanA1_2853... 93.6 2e-17
gi|118470947|ref|YP_888992.1| hypothetical protein MSMEG_4733 [M... 90.9 1e-16
gi|118617179|ref|YP_905511.1| hypothetical protein MUL_1527 [Myc... 90.9 1e-16
gi|118469152|ref|YP_887333.1| hypothetical protein MSMEG_3015 [M... 89.0 5e-16
gi|118462330|ref|YP_882244.1| hypothetical protein MAV_3059 [Myc... 84.0 2e-14
gi|41407516|ref|NP_960352.1| hypothetical protein MAP1418c [Myco... 83.6 2e-14
gi|342860689|ref|ZP_08717339.1| hypothetical protein MCOL_17498 ... 79.0 5e-13
gi|254775512|ref|ZP_05217028.1| hypothetical protein MaviaA2_127... 78.2 8e-13
gi|118468883|ref|YP_884816.1| integral membrane protein [Mycobac... 72.4 6e-11
gi|169631175|ref|YP_001704824.1| hypothetical protein MAB_4097c ... 71.6 9e-11
gi|146760135|emb|CAJ77697.1| gap protein [Mycobacterium chelonae] 68.9 6e-10
gi|169631770|ref|YP_001705419.1| hypothetical protein MAB_4697 [... 67.8 1e-09
gi|169631771|ref|YP_001705420.1| hypothetical protein MAB_4698 [... 67.4 2e-09
gi|256395389|ref|YP_003116953.1| hypothetical protein Caci_6258 ... 43.5 0.023
gi|149916917|ref|ZP_01905418.1| phosphoenolpyruvate synthase [Pl... 41.2 0.12
gi|256393015|ref|YP_003114579.1| hypothetical protein Caci_3840 ... 40.0 0.29
gi|111021272|ref|YP_704244.1| hypothetical protein RHA1_ro04295 ... 38.1 1.1
gi|229491566|ref|ZP_04385387.1| putative membrane protein [Rhodo... 38.1 1.2
gi|120402653|ref|YP_952482.1| histidine kinase [Mycobacterium va... 37.4 1.8
>gi|254233310|ref|ZP_04926636.1| hypothetical protein TBCG_03747 [Mycobacterium tuberculosis C]
gi|254366365|ref|ZP_04982409.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|124603103|gb|EAY61378.1| hypothetical protein TBCG_03747 [Mycobacterium tuberculosis C]
gi|134151877|gb|EBA43922.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|339296629|gb|AEJ48740.1| hypothetical protein CCDC5079_3551 [Mycobacterium tuberculosis
CCDC5079]
gi|339300227|gb|AEJ52337.1| hypothetical protein CCDC5180_3500 [Mycobacterium tuberculosis
CCDC5180]
Length=265
Score = 464 bits (1194), Expect = 4e-129, Method: Compositional matrix adjust.
Identities = 237/237 (100%), Positives = 237/237 (100%), Gaps = 0/237 (0%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT
Sbjct 29 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 88
Query 61 PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSGA 120
PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSGA
Sbjct 89 PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSGA 148
Query 121 HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV 180
HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV
Sbjct 149 HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV 208
Query 181 AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL
Sbjct 209 AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 265
>gi|15610957|ref|NP_218338.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
gi|15843445|ref|NP_338482.1| hypothetical protein MT3929 [Mycobacterium tuberculosis CDC1551]
gi|148663689|ref|YP_001285212.1| hypothetical protein MRA_3861 [Mycobacterium tuberculosis H37Ra]
63 more sequence titles
Length=237
Score = 463 bits (1192), Expect = 8e-129, Method: Compositional matrix adjust.
Identities = 237/237 (100%), Positives = 237/237 (100%), Gaps = 0/237 (0%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT
Sbjct 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
Query 61 PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSGA 120
PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSGA
Sbjct 61 PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSGA 120
Query 121 HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV 180
HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV
Sbjct 121 HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV 180
Query 181 AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL
Sbjct 181 AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
>gi|31794995|ref|NP_857488.1| integral membrane protein [Mycobacterium bovis AF2122/97]
gi|121639738|ref|YP_979962.1| putative integral membrane protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224992233|ref|YP_002646923.1| putative integral membrane protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|31620593|emb|CAD96037.1| PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121495386|emb|CAL73873.1| Probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224775349|dbj|BAH28155.1| putative integral membrane protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|341603759|emb|CCC66440.1| probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Moreau RDJ]
Length=237
Score = 460 bits (1183), Expect = 9e-128, Method: Compositional matrix adjust.
Identities = 235/237 (99%), Positives = 236/237 (99%), Gaps = 0/237 (0%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT
Sbjct 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
Query 61 PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSGA 120
PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGD+GGRVLRESVPPSG
Sbjct 61 PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDNGGRVLRESVPPSGT 120
Query 121 HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV 180
HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV
Sbjct 121 HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV 180
Query 181 AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL
Sbjct 181 AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
>gi|289445422|ref|ZP_06435166.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
gi|289418380|gb|EFD15581.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
Length=237
Score = 460 bits (1183), Expect = 1e-127, Method: Compositional matrix adjust.
Identities = 236/237 (99%), Positives = 236/237 (99%), Gaps = 0/237 (0%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT
Sbjct 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
Query 61 PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSGA 120
PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSGA
Sbjct 61 PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSGA 120
Query 121 HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV 180
HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV
Sbjct 121 HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV 180
Query 181 AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRR AALLVAAGGCLMLTLGLSNL
Sbjct 181 AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRHAALLVAAGGCLMLTLGLSNL 237
>gi|340628790|ref|YP_004747242.1| putative integral membrane protein [Mycobacterium canettii CIPT
140010059]
gi|340006980|emb|CCC46171.1| putative conserved integral membrane protein [Mycobacterium canettii
CIPT 140010059]
Length=237
Score = 458 bits (1179), Expect = 2e-127, Method: Compositional matrix adjust.
Identities = 235/237 (99%), Positives = 235/237 (99%), Gaps = 0/237 (0%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT
Sbjct 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
Query 61 PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSGA 120
PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVP SGA
Sbjct 61 PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPSSGA 120
Query 121 HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV 180
HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV
Sbjct 121 HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV 180
Query 181 AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLML LGLSNL
Sbjct 181 AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLALGLSNL 237
>gi|296166953|ref|ZP_06849369.1| GAP family peptidoglyclipid addressing protein [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295897692|gb|EFG77282.1| GAP family peptidoglyclipid addressing protein [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=242
Score = 248 bits (632), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 138/238 (58%), Positives = 171/238 (72%), Gaps = 2/238 (0%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MW TVLVLA +V+ EP+R+GLVVL+L+RRRPL+ LL FL GG+ M G +V L +L
Sbjct 1 MWITVLVLAGAVMFEPIRLGLVVLLLSRRRPLVQLLVFLGGGFAMGVGAGLVVLFILRTA 60
Query 61 PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESV--PPS 118
P+ GH +V EVQI +GL+AL+IA L T + + R A GG + P+
Sbjct 61 PVVGHVNVPEVQIASGLVALVIAAVLATKASLRKLVRPVPADAAVGGGGGVGLLEGAAPT 120
Query 119 GAHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFN 178
G LA RAR F++GDSL VA VSG+GA+LPSANYMG+MAAILAS A P TQ A++ FN
Sbjct 121 GRRPLAERARSFVRGDSLGVAAVSGMGASLPSANYMGSMAAILASHAAPVTQVQALLAFN 180
Query 179 VVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSN 236
+VAFTVAE+PL+ YLAAP+KTRAFM ALQ+WLRSR RD A LVAAGGCLML LG++
Sbjct 181 LVAFTVAEIPLIGYLAAPQKTRAFMGALQNWLRSRGHRDIAALVAAGGCLMLILGVTG 238
>gi|342860078|ref|ZP_08716730.1| putative integral membrane protein [Mycobacterium colombiense
CECT 3035]
gi|342132456|gb|EGT85685.1| putative integral membrane protein [Mycobacterium colombiense
CECT 3035]
Length=238
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/238 (62%), Positives = 171/238 (72%), Gaps = 1/238 (0%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MW TVL+LA SVI EP+R+GLVVL+L+R+RPL LL F CGG TM GV +V L VL A
Sbjct 1 MWITVLILAGSVIFEPIRLGLVVLLLSRKRPLRQLLVFCCGGLTMGSGVGLVVLFVLRAA 60
Query 61 PLAGHFSVAEVQIGTGLIALLIAFALTTNVI-GKHVRRATHARVGDDGGRVLRESVPPSG 119
P+ GH SVA+VQ+ +G +ALLIA A+ N + K VRR+ GG L E P
Sbjct 61 PVFGHVSVAQVQLASGFVALLIAAAIAANTVRHKPVRRSPANAEAAGGGVALLERTQPGA 120
Query 120 AHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNV 179
KL RAR FLQGDSL VA VSGLGAALPSANYM +MAAILAS A TQA AVV +N+
Sbjct 121 LAKLTGRARAFLQGDSLRVAWVSGLGAALPSANYMASMAAILASHAGAVTQAQAVVAYNL 180
Query 180 VAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
VAFTVAE+PLVS L APR+TRA M ALQ+WLRSR+R D A L+A GG ML LGL++L
Sbjct 181 VAFTVAEIPLVSCLLAPRRTRASMVALQTWLRSRTRGDIAALIATGGAAMLALGLTSL 238
>gi|120401303|ref|YP_951132.1| hypothetical protein Mvan_0277 [Mycobacterium vanbaalenii PYR-1]
gi|119954121|gb|ABM11126.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=220
Score = 178 bits (451), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 102/237 (44%), Positives = 147/237 (63%), Gaps = 17/237 (7%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MW +LV+A +V EP RIG+ V+M+NR RP+L LL+FL GG+ M V ++ L VL
Sbjct 1 MWFPLLVMAAAVSLEPFRIGMTVVMVNRPRPVLQLLSFLAGGFVMGTAVGLIVLFVLRPA 60
Query 61 PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSGA 120
+ HF++ VQ+G G + L+ A L T V+G + R G GR
Sbjct 61 LGSAHFTLPRVQLGVGAVVLVNAVLLATGVLGGN-------RDGTAAGR----------W 103
Query 121 HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV 180
L RAR L+G SL+ AGV+GLG ALPS +Y+ A+A I+ASGA A Q A++ FNVV
Sbjct 104 APLVTRARRLLEGRSLWTAGVAGLGIALPSIDYLAALALIVASGAAAAVQFSALIVFNVV 163
Query 181 AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
AF + E+PL+ YL AP +TRA +++L W+R++ RR +LL+A GC+++ +G + L
Sbjct 164 AFALVEIPLLCYLVAPDRTRAALSSLYEWVRAQGRRGVSLLLAVVGCVLVAVGFAGL 220
>gi|118470074|ref|YP_884826.1| hypothetical protein MSMEG_0413 [Mycobacterium smegmatis str.
MC2 155]
gi|118171361|gb|ABK72257.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=225
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/239 (44%), Positives = 144/239 (61%), Gaps = 16/239 (6%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MW +L++A + EP RIG+ V+M+NR +P L L TFL GG+ M V MV L V+
Sbjct 1 MWIPLLLMAAVISLEPFRIGMTVVMINRPQPALQLSTFLAGGFLMGTAVGMVVLFVMRPA 60
Query 61 PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDG--GRVLRESVPPS 118
+ HF++ VQI G + L A + T ++G R D G GRV R P
Sbjct 61 LGSAHFTLPRVQIAVGALILANAVLVATGLLG--------GRRKDPGPPGRVRRMLGPA- 111
Query 119 GAHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFN 178
A R R L G SL+ AGV+GLG ALPS +Y+ A+A I+ASGA +TQ A++ FN
Sbjct 112 -----ADRTRTLLTGSSLWAAGVAGLGIALPSVDYLAALALIVASGAAASTQFGALMLFN 166
Query 179 VVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
VVAF + E+PLV YL AP +TRA +AA+ WL++R RR A L+A GC++L +G++ L
Sbjct 167 VVAFALVEIPLVCYLVAPERTRATLAAVYDWLKARGRRGFATLLAVVGCMLLGVGIAAL 225
>gi|85541019|gb|ABC70856.1| Gap-like [Mycobacterium smegmatis str. MC2 155]
Length=229
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/239 (44%), Positives = 144/239 (61%), Gaps = 16/239 (6%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MW +L++A + EP RIG+ V+M+NR +P L L TFL GG+ M V MV L V+
Sbjct 5 MWIPLLLMAAVISLEPFRIGMTVVMINRPQPALQLSTFLAGGFLMGTAVGMVVLFVMRPA 64
Query 61 PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDG--GRVLRESVPPS 118
+ HF++ VQI G + L A + T ++G R D G GRV R P
Sbjct 65 LGSAHFTLPRVQIAVGALILANAVLVATGLLG--------GRRKDPGPPGRVRRMLGPA- 115
Query 119 GAHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFN 178
A R R L G SL+ AGV+GLG ALPS +Y+ A+A I+ASGA +TQ A++ FN
Sbjct 116 -----ADRTRTLLTGSSLWAAGVAGLGIALPSVDYLAALALIVASGAAASTQFGALMLFN 170
Query 179 VVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
VVAF + E+PLV YL AP +TRA +AA+ WL++R RR A L+A GC++L +G++ L
Sbjct 171 VVAFALVEIPLVCYLVAPERTRATLAAVYDWLKARGRRGFATLLAVVGCMLLGVGIAAL 229
>gi|15827631|ref|NP_301894.1| hypothetical protein ML1233 [Mycobacterium leprae TN]
gi|221230108|ref|YP_002503524.1| hypothetical protein MLBr_01233 [Mycobacterium leprae Br4923]
gi|466802|gb|AAA17078.1| Lepb1170_F2_64 [Mycobacterium leprae]
gi|13093182|emb|CAC31614.1| conserved membrane protein [Mycobacterium leprae]
gi|219933215|emb|CAR71328.1| conserved membrane protein [Mycobacterium leprae Br4923]
Length=230
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 111/240 (47%), Positives = 146/240 (61%), Gaps = 13/240 (5%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MW T+L++A+++ EP RIG+ VLMLNR RP L LL FLC G+TM V V L V
Sbjct 1 MWITILLMAIAISLEPFRIGMTVLMLNRPRPTLQLLVFLCSGFTMGMTVGFVVLFVFRRR 60
Query 61 PLAG-HFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSG 119
+A ++ +VQI G++ALL+A LT V A + V G P
Sbjct 61 LMASMQLTLPKVQILIGVLALLVAAVLTVQVCISSEPPA-ESPVDSASG--------PPK 111
Query 120 AHKLAVR--ARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTF 177
K A R AR L GDSL+VAGV+GLG ALPS +Y+ A+A IL SGA TQ A++ F
Sbjct 112 PSKWAPRPLAR-LLNGDSLWVAGVAGLGIALPSVDYLAALAVILTSGAAATTQVGALLMF 170
Query 178 NVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
NVVAF + E+PL +YL AP TRA+ AAL +W+RSR R + A L+A CL+L +G++ L
Sbjct 171 NVVAFALIEIPLAAYLLAPDTTRAWTAALNNWIRSRRRLEVATLLAGVSCLLLAVGIAGL 230
>gi|169628031|ref|YP_001701680.1| hypothetical protein MAB_0934 [Mycobacterium abscessus ATCC 19977]
gi|146760174|emb|CAJ77671.1| gap like protein [Mycobacterium abscessus]
gi|169239998|emb|CAM61026.1| Conserved hypothetical integral membrane protein [Mycobacterium
abscessus]
Length=217
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/238 (42%), Positives = 149/238 (63%), Gaps = 22/238 (9%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVL-GA 59
MW T+LV+A++V EP R+G+ VLMLNR RP+L LL FL GG+ M V +V L
Sbjct 1 MWITLLVMAIAVSFEPFRLGMTVLMLNRPRPMLQLLAFLSGGFVMGMAVGLVVLFAFRNV 60
Query 60 TPLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSG 119
+ + HF++ VQIG G+ ALL+A + + + G A+HA++
Sbjct 61 STGSAHFTLPRVQIGIGVAALLVAALVASRLRGP----ASHAQL---------------- 100
Query 120 AHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNV 179
K++ R + G SL+VAGV+GLG ALPS +++ A+A I+ASG+ PATQ A++ FNV
Sbjct 101 -DKVSARIQSIATGGSLWVAGVAGLGIALPSVDFLAALAVIVASGSPPATQISALLMFNV 159
Query 180 VAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
+AF + E+P +++ AP +T MA L SW++S RR+ AL++ A GC++L +GL+ +
Sbjct 160 IAFALVEIPFLAHAVAPERTAEAMARLNSWIQSNRRRNIALVLTAVGCVLLAVGLAGI 217
>gi|342857526|ref|ZP_08714182.1| hypothetical protein MCOL_01580 [Mycobacterium colombiense CECT
3035]
gi|342134859|gb|EGT88025.1| hypothetical protein MCOL_01580 [Mycobacterium colombiense CECT
3035]
Length=217
Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/238 (45%), Positives = 141/238 (60%), Gaps = 22/238 (9%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
M T++ +A V EP RIG+ VLMLNR RP+L LL+FL GG+ M V ++ + V T
Sbjct 1 MLITLIAMAFVVSLEPFRIGMTVLMLNRPRPMLQLLSFLGGGFAMGMTVGLLVVFVFRRT 60
Query 61 PLAG-HFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSG 119
L +F++ VQI G+ FAL + R TH R G G
Sbjct 61 LLGSTYFTLPRVQILIGV------FALLLAATLVAMDR-TH-RSGPQPG----------- 101
Query 120 AHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNV 179
LA R + L G SL++AGV+GLG ALPS +Y+ A+A ILASGAT TQ A++ FN
Sbjct 102 --MLATRVQQLLNGRSLWIAGVAGLGIALPSVDYLAALAVILASGATATTQVGALLVFNC 159
Query 180 VAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
VAF + E+PL+SYL AP+ T A M AL W+RSR R + A L+AA GC++L +G +NL
Sbjct 160 VAFALVEIPLLSYLLAPQATHASMVALHGWIRSRRRIEVAALLAAVGCVLLAIGGANL 217
>gi|108797229|ref|YP_637426.1| hypothetical protein Mmcs_0249 [Mycobacterium sp. MCS]
gi|119866314|ref|YP_936266.1| hypothetical protein Mkms_0259 [Mycobacterium sp. KMS]
gi|126432852|ref|YP_001068543.1| hypothetical protein Mjls_0239 [Mycobacterium sp. JLS]
gi|108767648|gb|ABG06370.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119692403|gb|ABL89476.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126232652|gb|ABN96052.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=222
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/237 (41%), Positives = 139/237 (59%), Gaps = 15/237 (6%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MW +LV+A++V EP R+G+ VLM+NR +P LL L GG+ M V ++ L VL
Sbjct 1 MWIPLLVMAVAVSLEPFRVGMTVLMINRPQPRRQLLALLAGGFAMGLTVGVIVLFVLRPA 60
Query 61 PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSGA 120
+ HF++ VQI G + L+ A + T V G+ G D S+ +
Sbjct 61 LDSAHFTLPVVQIAVGAVVLVNAALVATGVWGR----------GRDA-----VSLADTRF 105
Query 121 HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV 180
LA R R L G SL+ AG++GLG ALPS +Y+ A+A I+ASGA Q A++ FNVV
Sbjct 106 GPLATRTRRLLDGRSLWTAGIAGLGIALPSVDYLAALALIVASGAATTVQLGALMVFNVV 165
Query 181 AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
AF + E+PL+ YL AP +TRA ++AL WLR++ RR L+A GC++L +G + L
Sbjct 166 AFALVEIPLLCYLVAPERTRAALSALYEWLRAQGRRGVGALLAVIGCVLLGVGFAGL 222
>gi|169630228|ref|YP_001703877.1| hypothetical protein MAB_3146c [Mycobacterium abscessus ATCC
19977]
gi|169242195|emb|CAM63223.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=227
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 100/224 (45%), Positives = 134/224 (60%), Gaps = 15/224 (6%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MW+ VL++A+ V EP R+GL VLMLNR RPLL L FLCG + M + + L VL +
Sbjct 1 MWTIVLLMAIGVSVEPTRLGLTVLMLNRPRPLLQLFVFLCGAFAMGLSLGLTLLFVLRVS 60
Query 61 PLA-GHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSG 119
P+ S +QIG G++ALL+A L G A G G
Sbjct 61 PVGKADVSGPYIQIGLGVLALLVAAVLAVTASGSRPPAAPRTTTGFAG------------ 108
Query 120 AHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNV 179
KLA R R FLQ +SL+VAGVSGLG ALPSA+++ +A I ASG T Q++A++ FNV
Sbjct 109 --KLATRVRGFLQNNSLWVAGVSGLGIALPSADFLAVIALIHASGETQPVQSMALLFFNV 166
Query 180 VAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVA 223
VAF++ +PL+SY A P +T ++AL +W+RSR R D A +VA
Sbjct 167 VAFSMVGLPLLSYAAMPGRTYQMVSALHTWVRSRRRIDVAGIVA 210
>gi|146760141|emb|CAJ77662.1| gap like protein [Mycobacterium chelonae]
Length=217
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/236 (42%), Positives = 145/236 (62%), Gaps = 22/236 (9%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVL-GA 59
MW T+LV+AL+V EP R+G+ VLMLNR RP L LL FLCGG+ M V +V L
Sbjct 1 MWITLLVMALAVSFEPFRLGMTVLMLNRPRPQLQLLAFLCGGFAMGTAVGLVVLFTFRHV 60
Query 60 TPLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSG 119
+ + F++ VQIG G+ ALL+A L + V G +++A++ GR+
Sbjct 61 STGSAQFTLPRVQIGIGVAALLVAALLASRVRGP----SSNAQLDKVTGRI--------- 107
Query 120 AHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNV 179
+ G SL+VA V+GLG ALPS +++ A+A I+ASG ATQ A++ FN+
Sbjct 108 --------QSIATGGSLWVALVAGLGIALPSVDFLAALAVIVASGTPAATQVSALLMFNI 159
Query 180 VAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLS 235
+AF + E+PL++++ AP +T MA L SW++S RR+ AL++A GC++L +GL+
Sbjct 160 IAFALIEIPLLAHVVAPERTAEVMARLNSWIQSNRRRNIALVLAVVGCVLLAVGLA 215
>gi|41408334|ref|NP_961170.1| hypothetical protein MAP2236 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118463397|ref|YP_880983.1| hypothetical protein MAV_1758 [Mycobacterium avium 104]
gi|41396690|gb|AAS04553.1| hypothetical protein MAP_2236 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118164684|gb|ABK65581.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336458229|gb|EGO37210.1| Protein of unknown function (DUF2910) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=216
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 106/238 (45%), Positives = 146/238 (62%), Gaps = 23/238 (9%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
M TVLV+A +V EP RIG+ VLM+ R RP+L LL FL GG+ M V +V L +L
Sbjct 1 MLITVLVMAAAVSVEPFRIGMAVLMMTRPRPVLQLLAFLAGGFAMGMTVGLVVLFLLRRV 60
Query 61 PL-AGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSG 119
L + +F+V +VQ+ G++ALL+A AL R+G + R
Sbjct 61 LLGSSYFTVPKVQLLIGVLALLVAAALAV---------DVPRRLGSRPAAMARP------ 105
Query 120 AHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNV 179
A+ L GDSL VAG++GLG ALPS +Y+ A+A I+ASGA ATQ A++ FNV
Sbjct 106 -------AQRLLNGDSLSVAGLAGLGIALPSVDYLAALAVIVASGAAAATQVGALLLFNV 158
Query 180 VAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
VAF + E+PL++YL AP +T A M AL +W+RSR R A+L+AA GC+ LT+G++ L
Sbjct 159 VAFALVEIPLLAYLVAPARTAASMTALHNWIRSRRRPQVAVLLAAAGCVFLTVGVTGL 216
>gi|254774574|ref|ZP_05216090.1| hypothetical protein MaviaA2_07883 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=215
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/238 (46%), Positives = 148/238 (63%), Gaps = 29/238 (12%)
Query 4 TVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGATPL- 62
TVLV+A +V EP RIG+ VLM+ R RP+L LL FL GG+ M V +V L +L L
Sbjct 3 TVLVMAAAVSVEPFRIGMAVLMMTRPRPVLQLLAFLAGGFAMGMTVGLVVLFLLRRVLLG 62
Query 63 AGHFSVAEVQIGTGLIALLIAFALTTNV---IGKHVRRATHARVGDDGGRVLRESVPPSG 119
+ +F+V +VQ+ G++ALL+A AL +V +G R A AR
Sbjct 63 SSYFTVPKVQLLIGVLALLVAAALAVDVPRWLGS--RPAAMAR----------------- 103
Query 120 AHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNV 179
A+ L GDSL VAG++GLG ALPS +Y+ A+A I+ASGA ATQ A++ FNV
Sbjct 104 ------PAQRLLNGDSLSVAGLAGLGIALPSVDYLAALAVIVASGAAAATQVGALLLFNV 157
Query 180 VAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
VAF + E+PL++YL AP +T A M AL +W+RSR R A+L+AA GC+ LT+G++ L
Sbjct 158 VAFALVEIPLLAYLVAPARTAASMTALHNWIRSRRRPQVAVLLAAAGCVFLTVGVTGL 215
>gi|145221004|ref|YP_001131682.1| hypothetical protein Mflv_0400 [Mycobacterium gilvum PYR-GCK]
gi|315442024|ref|YP_004074903.1| hypothetical protein Mspyr1_03550 [Mycobacterium sp. Spyr1]
gi|145213490|gb|ABP42894.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315260327|gb|ADT97068.1| hypothetical protein Mspyr1_03550 [Mycobacterium sp. Spyr1]
Length=218
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/215 (43%), Positives = 126/215 (59%), Gaps = 19/215 (8%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MW T+L +A++V EP RIG+ VLM+NR RP L LL FL GG+ M V + L +L
Sbjct 1 MWITLLAMAVAVSLEPFRIGMTVLMINRPRPGLQLLAFLTGGFAMGTAVGVAVLFLLRPV 60
Query 61 PLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSGA 120
+ F++ VQI GL+ L A A+ + ++G+ D GR
Sbjct 61 LDSAQFTLPRVQIVVGLVVLCTAAAVGSGLVGRP----------RDPGR---------AP 101
Query 121 HKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVV 180
LA+RAR L G SL+ A GLG ALPS +Y+ A+A I ASGA ATQ A++ FN V
Sbjct 102 GVLAMRARRLLDGRSLWTAAAVGLGTALPSVDYLAALALIAASGAAAATQFGALMAFNAV 161
Query 181 AFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSR 215
AF + E+PL+ YL +P +TRA +A+L SW+R+R R
Sbjct 162 AFALIEIPLLCYLVSPDRTRAVLASLNSWIRARGR 196
>gi|254818761|ref|ZP_05223762.1| hypothetical protein MintA_02494 [Mycobacterium intracellulare
ATCC 13950]
Length=228
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 97/216 (45%), Positives = 128/216 (60%), Gaps = 11/216 (5%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGV-AMVTLVVLGA 59
M T+ V+AL+V EP RIG+ VLMLNR +PLL LL F+ GG+ M V A V ++
Sbjct 1 MLFTIGVMALAVSLEPFRIGMTVLMLNRPKPLLQLLAFVAGGFAMGLTVGATVLFLLRRV 60
Query 60 TPLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSG 119
+ +F++ VQI G +AL A L ++ RR + V D R +G
Sbjct 61 LLRSTYFTLPRVQILIGALALAAAAGLAVKIVADR-RRGSRG-VPPDRDR--------AG 110
Query 120 AHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNV 179
L R R L G SL+VA +GLG ALPS +Y+ A+A ILASGA TQ A++ FNV
Sbjct 111 PAWLTTRLRRLLDGRSLWVAAAAGLGIALPSVDYLAALAVILASGAPVMTQLGALLMFNV 170
Query 180 VAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSR 215
+AF++ E+PLV+YL AP TRA M ALQ W+RSR R
Sbjct 171 IAFSLVEIPLVAYLLAPTATRAAMTALQDWIRSRRR 206
>gi|126435681|ref|YP_001071372.1| hypothetical protein Mjls_3102 [Mycobacterium sp. JLS]
gi|126235481|gb|ABN98881.1| hypothetical protein Mjls_3102 [Mycobacterium sp. JLS]
Length=240
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/240 (35%), Positives = 134/240 (56%), Gaps = 3/240 (1%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MW+TVL+L L+V EP R+GL+ L+L R RP+ HL+ F G T++ V + L V +
Sbjct 1 MWTTVLLLGLTVSIEPTRLGLIALLLTRPRPVRHLIVFQITGLTISLSVGLTVLFVFHHS 60
Query 61 PLAG-HFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLRESVPPSG 119
L S A +QI G++ LL+A L +NV R G + + +P
Sbjct 61 FLGNSDISPAPLQIAFGVVVLLLAAVLASNVPLNRFSRQKVPAAGGADVAAVEDVLPSPT 120
Query 120 AHK--LAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTF 177
+ + L R R F +G+S ++ G A+PS +Y +A I+AS A QA+A++TF
Sbjct 121 SRRARLLQRVRRFARGESSALSASIGAATAMPSIDYFALLAIIIASKAPALEQAVALLTF 180
Query 178 NVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
++A A +PL+S++ AP +TR ++ L SW+R+R+R+ A L V G +++ +G+ L
Sbjct 181 LLLAGAGASLPLLSFIVAPARTRIWVQELSSWVRNRTRKQAGLFVGVVGAILIAIGVYGL 240
>gi|15608655|ref|NP_216033.1| hypothetical protein Rv1517 [Mycobacterium tuberculosis H37Rv]
gi|148661313|ref|YP_001282836.1| hypothetical protein MRA_1529 [Mycobacterium tuberculosis H37Ra]
gi|148822742|ref|YP_001287496.1| hypothetical protein TBFG_11551 [Mycobacterium tuberculosis F11]
36 more sequence titles
Length=254
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/254 (34%), Positives = 127/254 (50%), Gaps = 17/254 (6%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVL--- 57
MW+ VL+L L + +P R+GL V+ML+RRRP+L+L F GG G+A+ LV +
Sbjct 1 MWTMVLLLGLGMAIDPARLGLAVVMLSRRRPMLNLFAFWVGGMVAGVGIALAVLVFMRDV 60
Query 58 ------GATPLAGHFSVA-------EVQIGTGLIALLIAFALTTNVIGKHVRRATHARVG 104
G A F A + I G+I LL+A + + V
Sbjct 61 ALAAIQGVVSAANEFREAVGILAGGRLHIVIGVIMLLLAARMVARARAQVGVPVGPVGVA 120
Query 105 DDGGRVLR-ESVPPSGAHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILAS 163
D G L PP +L VR + LQGD ++ A V G+ ++ P + A+ I+AS
Sbjct 121 DGGMSALALAQRPPGLVARLEVRTQQMLQGDVVWPAFVVGVASSAPPFESVVALTVIMAS 180
Query 164 GATPATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVA 223
GA TQ A V F ++ V E+PLV+YLA P++T+ M Q W+RS R+ + ++
Sbjct 181 GAEIGTQLGAFVVFTLLVLAVIEIPLVAYLAIPQQTQQVMLRFQDWVRSNRRQISLTILI 240
Query 224 AGGCLMLTLGLSNL 237
G L L G+++L
Sbjct 241 GVGFLFLYQGVTSL 254
>gi|289753603|ref|ZP_06512981.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289694190|gb|EFD61619.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=254
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/254 (34%), Positives = 127/254 (50%), Gaps = 17/254 (6%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVL--- 57
MW+ VL+L L + +P R+GL V+ML+RRRP+L+L F GG G+A+ LV +
Sbjct 1 MWTMVLLLGLGMAIDPARLGLAVVMLSRRRPMLNLFAFWVGGMVAGVGIALAVLVFMRDV 60
Query 58 ------GATPLAGHFSVA-------EVQIGTGLIALLIAFALTTNVIGKHVRRATHARVG 104
G A F A + I G+I LL+A + + V
Sbjct 61 ALAAIQGVVSAADEFREAVGILAGGRLHIVIGVIMLLLAARMVARARAQVGVPVGPVGVA 120
Query 105 DDGGRVLR-ESVPPSGAHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILAS 163
D G L PP +L VR + LQGD ++ A V G+ ++ P + A+ I+AS
Sbjct 121 DGGMSALALAQRPPGLVARLEVRTQQMLQGDVVWPAFVVGVASSAPPFESVVALTVIMAS 180
Query 164 GATPATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVA 223
GA TQ A V F ++ V E+PLV+YLA P++T+ M Q W+RS R+ + ++
Sbjct 181 GAEIGTQFGAFVVFTLLVLAVIEIPLVAYLAIPQQTQQVMLRFQDWVRSNRRQISLTILI 240
Query 224 AGGCLMLTLGLSNL 237
G L L G+++L
Sbjct 241 GVGFLFLYQGVTSL 254
>gi|15840983|ref|NP_336020.1| hypothetical protein MT1567 [Mycobacterium tuberculosis CDC1551]
gi|31792703|ref|NP_855196.1| hypothetical protein Mb1544 [Mycobacterium bovis AF2122/97]
gi|121637438|ref|YP_977661.1| hypothetical protein BCG_1569 [Mycobacterium bovis BCG str. Pasteur
1173P2]
33 more sequence titles
Length=254
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/254 (34%), Positives = 127/254 (50%), Gaps = 17/254 (6%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVL--- 57
MW+ VL+L L + +P R+GL V+ML+RRRP+L+L F GG G+A+ LV +
Sbjct 1 MWTMVLLLGLGMAIDPARLGLAVVMLSRRRPMLNLFAFWVGGMVAGVGIALAVLVFMRDV 60
Query 58 ------GATPLAGHFSVA-------EVQIGTGLIALLIAFALTTNVIGKHVRRATHARVG 104
G A F A + I G+I LL+A + + V
Sbjct 61 ALAAIQGVVSAANEFREAVGILAGGRLHIVIGVIMLLLAARMVARARAQVGVPVGPVGVA 120
Query 105 DDGGRVLR-ESVPPSGAHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILAS 163
D G L PP +L VR + LQGD ++ A V G+ ++ P + A+ I+AS
Sbjct 121 DGGMSALALAQRPPGLVARLEVRTQQMLQGDVVWPAFVVGVASSAPPFESVVALTVIMAS 180
Query 164 GATPATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVA 223
GA TQ A V F ++ V E+PLV+YLA P++T+ M Q W+RS R+ + ++
Sbjct 181 GAEIGTQFGAFVVFTLLVLAVIEIPLVAYLAIPQQTQQVMLRFQDWVRSNRRQISLTILI 240
Query 224 AGGCLMLTLGLSNL 237
G L L G+++L
Sbjct 241 GVGFLFLYQGVTSL 254
>gi|339294492|gb|AEJ46603.1| hypothetical protein CCDC5079_1413 [Mycobacterium tuberculosis
CCDC5079]
gi|339298129|gb|AEJ50239.1| hypothetical protein CCDC5180_1402 [Mycobacterium tuberculosis
CCDC5180]
Length=251
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/250 (34%), Positives = 124/250 (50%), Gaps = 17/250 (6%)
Query 5 VLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVL------- 57
VL+L L + +P R+GL V+ML+RRRP+L+L F GG G+A+ LV +
Sbjct 2 VLLLGLGMAIDPARLGLAVVMLSRRRPMLNLFAFWVGGMVAGVGIALAVLVFMRDVALAA 61
Query 58 --GATPLAGHFSVA-------EVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGG 108
G A F A + I G+I LL+A + + V D G
Sbjct 62 IQGVVSAANEFREAVGILAGGRLHIVIGVIMLLLAARMVARARAQVGVPVGPVGVADGGM 121
Query 109 RVLR-ESVPPSGAHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATP 167
L PP +L VR + LQGD ++ A V G+ ++ P + A+ I+ASGA
Sbjct 122 SALALAQRPPGLVARLEVRTQQMLQGDVVWPAFVVGVASSAPPFESVVALTVIMASGAEI 181
Query 168 ATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGC 227
TQ A V F ++ V E+PLV+YLA P++T+ M Q W+RS R+ + ++ G
Sbjct 182 GTQFGAFVVFTLLVLAVIEIPLVAYLAIPQQTQQVMLRFQDWVRSNRRQISLTILIGVGF 241
Query 228 LMLTLGLSNL 237
L L G+++L
Sbjct 242 LFLYQGVTSL 251
>gi|308373171|ref|ZP_07431269.2| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|308375600|ref|ZP_07444475.2| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|308338640|gb|EFP27491.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|308345837|gb|EFP34688.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
Length=247
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/247 (33%), Positives = 121/247 (49%), Gaps = 17/247 (6%)
Query 8 LALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVL---------G 58
+ L + +P R+GL V+ML+RRRP+L+L F GG G+A+ LV + G
Sbjct 1 MGLGMAIDPARLGLAVVMLSRRRPMLNLFAFWVGGMVAGVGIALAVLVFMRDVALAAIQG 60
Query 59 ATPLAGHFSVA-------EVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVL 111
A F A + I G+I LL+A + + V D G L
Sbjct 61 VVSAANEFREAVGILAGGRLHIVIGVIMLLLAARMVARARAQVGVPVGPVGVADGGMSAL 120
Query 112 R-ESVPPSGAHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQ 170
PP +L VR + LQGD ++ A V G+ ++ P + A+ I+ASGA TQ
Sbjct 121 ALAQRPPGLVARLEVRTQQMLQGDVVWPAFVVGVASSAPPFESVVALTVIMASGAEIGTQ 180
Query 171 ALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLML 230
A V F ++ V E+PLV+YLA P++T+ M Q W+RS R+ + ++ G L L
Sbjct 181 LGAFVVFTLLVLAVIEIPLVAYLAIPQQTQQVMLRFQDWVRSNRRQISLTILIGVGFLFL 240
Query 231 TLGLSNL 237
G+++L
Sbjct 241 YQGVTSL 247
>gi|336460210|gb|EGO39114.1| Protein of unknown function (DUF2910) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=242
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/225 (37%), Positives = 115/225 (52%), Gaps = 22/225 (9%)
Query 3 STVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMA--GGVAMVTLV----- 55
TV+ +AL PVR+G+ +L+++R RP+L+LL F G A GV ++T+V
Sbjct 2 DTVIAMALIAATNPVRLGIALLLISRSRPVLNLLAFWLGAMATAITAGVGVLTVVHSFAP 61
Query 56 -------VLGATPLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGG 108
L ATP A H ++ IG ++A+ A++++V R T A V G
Sbjct 62 TLMQSVSALSATPDARH---TQIAIGLVILAITALVAVSSSV---RPTRVTSASVDRRAG 115
Query 109 RVLRESVPPSGAHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPA 168
L PS +L R R L D L VA V GLG+ P+ Y A+AAI ASG +
Sbjct 116 --LPRPNTPSTLARLRGRIRDVLTSDGLSVAFVLGLGSGFPAVEYPIALAAIAASGNSVG 173
Query 169 TQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSR 213
Q A V F VV V E+PLVSY A+P +T+A M + W+ R
Sbjct 174 VQFSAAVMFTVVMLLVIEIPLVSYSASPAQTQAVMQRIHDWVLPR 218
>gi|41409859|ref|NP_962695.1| hypothetical protein MAP3761c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398691|gb|AAS06311.1| hypothetical protein MAP_3761c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=242
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 115/225 (52%), Gaps = 22/225 (9%)
Query 3 STVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMA--GGVAMVTLV----- 55
TV+ +AL PVR+G+ +L+++R RP+L+LL F G A GV ++T+V
Sbjct 2 DTVIAMALIAATNPVRLGIALLLISRSRPVLNLLAFWLGAMATAITAGVGVLTVVHSFAP 61
Query 56 -------VLGATPLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGG 108
L ATP A H ++ IG ++A+ A++++V R T A V G
Sbjct 62 TLMQSVSALSATPDARH---TQIAIGLVILAITALVAVSSSV---RPTRVTSASVDRRAG 115
Query 109 RVLRESVPPSGAHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPA 168
L PS +L R R L D L VA + GLG+ P+ Y A+AAI ASG +
Sbjct 116 --LPRPNTPSTLARLRGRIRDVLTSDGLSVAFILGLGSGFPAVEYPIALAAIAASGNSVG 173
Query 169 TQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSR 213
Q A V F VV V E+PLVSY A+P +T+A M + W+ R
Sbjct 174 VQFSAAVMFTVVMLLVIEIPLVSYSASPAQTQAVMQRIHDWVLPR 218
>gi|240167921|ref|ZP_04746580.1| hypothetical protein MkanA1_01305 [Mycobacterium kansasii ATCC
12478]
Length=240
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/245 (34%), Positives = 128/245 (53%), Gaps = 15/245 (6%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVL--- 57
MW+TVL+LAL EPVR+G+ + ++++ RP+++LL F GG VA+ L++L
Sbjct 1 MWTTVLILALITATEPVRLGVALFLISKPRPMVNLLAFWFGGMATGAAVALGVLLLLRDF 60
Query 58 ------GATPLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVL 111
T LA +V +Q+ ++ ++ G VR G+ ++
Sbjct 61 AHALADNVTSLAASSTVGHIQV---VLGVVALVVAALIAAGVSVRSPALVSTGESSAVLV 117
Query 112 RESVPPSGAHKLAVRARCFLQGDSLYVAGVSGLGAA-LPSANYMGAMAAILASGATPATQ 170
+E PS +L A+ L+G +VA V+GL +A P Y+ A+ AI ASGA TQ
Sbjct 118 QEQ--PSRFSRLMANAQGALEGGFPWVAFVAGLSSAGPPPVEYLVALTAIGASGAAFGTQ 175
Query 171 ALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLML 230
A V + +V + E+PLVS+L P KT A M L++WLR+ R+ ++ AA G +L
Sbjct 176 LSATVAYLLVMLAIVEIPLVSHLVNPDKTEATMLRLRNWLRTHRRQILSIAFAAAGVALL 235
Query 231 TLGLS 235
G+
Sbjct 236 ASGMK 240
>gi|183983638|ref|YP_001851929.1| hypothetical protein MMAR_3658 [Mycobacterium marinum M]
gi|183176964|gb|ACC42074.1| conserved hypothetical transmembrane protein [Mycobacterium marinum
M]
Length=262
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/252 (35%), Positives = 129/252 (52%), Gaps = 27/252 (10%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVL--- 57
MW TVLVLAL +PVR+G+ VL+ +R RPL L+ F GG T +A+ L L
Sbjct 23 MWCTVLVLALVATADPVRLGISVLLSSRPRPLGQLIAFWLGGITTCVTLALGVLFGLREF 82
Query 58 -----------GATPLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDD 106
A+ AGH +QI G++ALLIA +G R+ A+ G
Sbjct 83 TLETMQRVQHATASSAAGH-----IQIAMGVLALLIA----GLAVGISPRQ--RAQFGVP 131
Query 107 GGRVLRESVPPSGAH-KLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGA 165
G V S +L++RA+ L+ L +A + G A L ++ A+ AILASGA
Sbjct 132 GSNSSHWQVLTSTTFARLSMRAQFALEARPLRMAFLLG-AAMLIDFRFLAALTAILASGA 190
Query 166 TPATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAG 225
TQ A + V+A E+PL S LAAP T M++L S++++R ++ L++A
Sbjct 191 AAGTQVSAAGIYTVIALAFIELPLASQLAAPASTGRIMSSLHSYVKARRQQLVGLVIAVL 250
Query 226 GCLMLTLGLSNL 237
G ++T G+ ++
Sbjct 251 GVFLMTSGMGHI 262
>gi|183982365|ref|YP_001850656.1| hypothetical protein MMAR_2352 [Mycobacterium marinum M]
gi|183175691|gb|ACC40801.1| conserved hypothetical transmembrane protein [Mycobacterium marinum
M]
Length=244
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/249 (33%), Positives = 129/249 (52%), Gaps = 17/249 (6%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTL------ 54
MW+TVL+LA+ EPVR+G+ + ++++ RP+++LL F GG MA G+ +
Sbjct 1 MWTTVLILAVMTATEPVRLGVAIFLVSKPRPMVNLLAFWFGG--MATGIGVALAVLLLLG 58
Query 55 -----VVLGATPLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGR 109
+V + LA V +Q+G G++ALL+A + T G VR G
Sbjct 59 DLANAIVDNVSSLAATSVVGHLQVGLGVVALLVAALVAT---GFSVRSPALVASGAGDSS 115
Query 110 VLRESVPPSGAHKLAVRARCFLQGDSLYVAGVSGLGAA-LPSANYMGAMAAILASGATPA 168
L + P+ +L A+ L+G + A V GL +A P Y+ A+ AI ASGA
Sbjct 116 TLMVAETPTRFSRLMASAQGALEGGFPWAAFVVGLSSAGPPPVEYLVALTAIGASGAAMG 175
Query 169 TQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCL 228
TQ A + +V + E+PL+SYL P +T A M L++WLR+ R+ A+ V G
Sbjct 176 TQLSATFVYLLVMLAIIEIPLISYLVHPGRTEATMLWLRNWLRAHRRQIIAVAVGLAGIA 235
Query 229 MLTLGLSNL 237
++T G+ +
Sbjct 236 LVTNGMGTI 244
>gi|240173293|ref|ZP_04751951.1| hypothetical protein MkanA1_28531 [Mycobacterium kansasii ATCC
12478]
Length=262
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/254 (36%), Positives = 129/254 (51%), Gaps = 31/254 (12%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLG-- 58
MW TVLVL L +PVRIG+ VL+ ++ R + L+ F GG + VA+ T V+ G
Sbjct 23 MWGTVLVLGLVATADPVRIGISVLLSSQPRAVGQLVAFWLGGIFTS--VALATGVLFGLR 80
Query 59 --------------ATPLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVG 104
A+ AGH +QI G+ ALLIA G+ +R +G
Sbjct 81 GFALDVMHRVEVATASSTAGH-----IQIAMGVTALLIAALAIRLSPGQRIR------LG 129
Query 105 DDGGRVLRESVPPS-GAHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILAS 163
G + V S +L+ RA+ LQ L VA V G+G L ++ A+ AILAS
Sbjct 130 MTGANPSQLQVRTSMTISRLSTRAQFALQARPLRVAFVLGVGM-LADLRFLVALTAILAS 188
Query 164 GATPATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVA 223
GA ATQ A + +VA T E+PL S LAAP KT M+ LQ W+++R + A+++A
Sbjct 189 GAAVATQVTAAGVYTLVALTFVELPLASQLAAPAKTGQIMSVLQRWVKARRHQIFAVVIA 248
Query 224 AGGCLMLTLGLSNL 237
G ++T G+ +
Sbjct 249 LLGAFLMTRGMGRV 262
>gi|118470947|ref|YP_888992.1| hypothetical protein MSMEG_4733 [Mycobacterium smegmatis str.
MC2 155]
gi|118172234|gb|ABK73130.1| putative membrane protein [Mycobacterium smegmatis str. MC2 155]
Length=256
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 92/270 (35%), Positives = 130/270 (49%), Gaps = 47/270 (17%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVL-GA 59
MWS VLVLAL +PVRIG+ +L++ R RP+ +LL + G G+A++ L L G
Sbjct 1 MWSAVLVLALVSAVDPVRIGITLLLIGRERPVANLLAYWLGLMAAGVGLAVIALTFLPGV 60
Query 60 TPLAGHFSVA--------EVQIGTGLIALLIAFALTTNVIGKHVRRATH----ARVGDD- 106
F VA +QI GL+A+ +A VI RR T + V D
Sbjct 61 VRPVTEFVVAAAEKPVIPPLQIAMGLLAIPVAV-----VIAMRARRRTLVAPVSEVADPV 115
Query 107 -----------------GGRVL--RESVPPSGAHKLAVRARCFLQGDSLYVAGVSGLGAA 147
G R L R S P + + G+S +A +GL +A
Sbjct 116 SAMAFAAAATPAASTASGKRSLLSRLSWPALFSGR---------WGNSAAMAFAAGLFSA 166
Query 148 LPSANYMGAMAAILASGATPATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQ 207
P Y A+ AI ASGA TQ A V F++V+F +AE+PLV YLA+P KT+A +A +
Sbjct 167 TPPLEYCFAILAIAASGAAIGTQVCAAVVFSLVSFAIAEIPLVGYLASPVKTKAIVARMH 226
Query 208 SWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
W+ + R A ++ G LML G+S +
Sbjct 227 DWIGTYRRPIFACILGLFGVLMLASGVSTI 256
>gi|118617179|ref|YP_905511.1| hypothetical protein MUL_1527 [Mycobacterium ulcerans Agy99]
gi|118569289|gb|ABL04040.1| conserved hypothetical transmembrane protein [Mycobacterium ulcerans
Agy99]
Length=244
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/249 (33%), Positives = 127/249 (52%), Gaps = 17/249 (6%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTL------ 54
MW+TVL+LA+ EPVR+G+ + ++++ RP+++LL F GG MA G+ +
Sbjct 1 MWTTVLILAVMTATEPVRLGVAIFLVSKPRPMVNLLAFWFGG--MATGIGVALAVLLLLG 58
Query 55 -----VVLGATPLAGHFSVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGR 109
+V + LA V +Q+G G++ALL+A + T G VR G
Sbjct 59 DLANAIVDNVSSLAATSVVGHLQVGLGVVALLVAALVAT---GFSVRSPALVASGAGDSS 115
Query 110 VLRESVPPSGAHKLAVRARCFLQGDSLYVAGVSGLGAA-LPSANYMGAMAAILASGATPA 168
L + P+ +L A+ L+G + A V GL +A P Y+ A+ AI SGA
Sbjct 116 TLMVAETPTRFSRLMASAQGALEGGFPWAAFVVGLSSAGPPPVEYLVALTAIGVSGAAMG 175
Query 169 TQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCL 228
TQ A + +V + E+PL+ YL P +T A M L++WLR+ R+ A+ V G
Sbjct 176 TQLSATFVYLLVMLAIIEIPLIGYLVHPGRTEATMLWLRNWLRAHRRQIIAVAVGLAGIA 235
Query 229 MLTLGLSNL 237
++T G+ +
Sbjct 236 LVTNGMGTI 244
>gi|118469152|ref|YP_887333.1| hypothetical protein MSMEG_3015 [Mycobacterium smegmatis str.
MC2 155]
gi|118170439|gb|ABK71335.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=248
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 82/250 (33%), Positives = 125/250 (50%), Gaps = 15/250 (6%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MWSTVLV+A+ +P+RIG+V ML+RR P+ LL F + + V + V T
Sbjct 1 MWSTVLVMAVVAGVDPLRIGVVAYMLSRRHPMRLLLPFFAVAFGLNVAVGAAVVFVFKNT 60
Query 61 PLAGHFSVAEV-QIGTGLIALLIAFALTTNVIGKHVRRATHARV-----GDDGGRVLR-- 112
G ++A +IG G+ ALL+A + T + V R H R G D
Sbjct 61 SGDGGQAIAPAAEIGIGVAALLLAALVATGTASRVVDRFRHRRATVPAAGSDRAEPGEGP 120
Query 113 -----ESVPPSGAHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATP 167
+S+P KL + L+G++ + A + GL P+ Y+ AMAA+L SGA
Sbjct 121 APPPLDSLPI--VSKLPESVKAALRGEAAWAAALLGLSNGFPTPYYLAAMAAVLTSGAAV 178
Query 168 ATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGC 227
Q A+V FNVV F A +P++S+ AP TRA + + +++ R ++ A G
Sbjct 179 GEQMAALVMFNVVGFAAALIPIISFWVAPVATRAAVERTYAAMKTHQRLVITVIAGAVGV 238
Query 228 LMLTLGLSNL 237
+ LG+S+L
Sbjct 239 FFVGLGVSHL 248
>gi|118462330|ref|YP_882244.1| hypothetical protein MAV_3059 [Mycobacterium avium 104]
gi|118163617|gb|ABK64514.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=261
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/270 (31%), Positives = 121/270 (45%), Gaps = 48/270 (17%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MW +VL L + PVR+GL +LM++R RP LL + GG T+ ++ +++L T
Sbjct 1 MWGSVLGLGMLAALNPVRLGLALLMISRPRPGPSLLAYWIGGLTVCVPELLIPVLLLNFT 60
Query 61 PLAGHFSVA---------EVQIGTGLIALLIAFALT------------------------ 87
P+ GH S A ++QIG G++ L IA LT
Sbjct 61 PMFGHPSHASPSTGSALGKIQIGLGVVGLSIAAVLTVRFAARQRAAAPPPDDRTSELSAA 120
Query 88 ---TNVIGKHVRRATHARVGDDGGRVLRESVPPSGAHKLAVRARCFLQGDSLYVAGVSGL 144
T + + + RA V D VLR +L R + + +VA V G+
Sbjct 121 PGATIAMPRLLTRAQD--VSPDDRSVLR---------RLLGRMHSAWESGASWVAWVIGV 169
Query 145 GAALPSANYMGAMAAILASGATPATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMA 204
++P + +A I ASGA+ Q A V F V+ + V EV LV YLA P KT++ +
Sbjct 170 -ISVPVDGVLFIVAIIAASGASVTAQVSASVAFVVLMYAVVEVILVGYLATPGKTQSLLL 228
Query 205 ALQSWLRSRSRRDAALLVAAGGCLMLTLGL 234
L W+R+ R+ L G L GL
Sbjct 229 VLHDWVRTYHRQILVALFTVVGVSQLAQGL 258
>gi|41407516|ref|NP_960352.1| hypothetical protein MAP1418c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395869|gb|AAS03735.1| hypothetical protein MAP_1418c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336457870|gb|EGO36864.1| Protein of unknown function (DUF2910) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=261
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/268 (30%), Positives = 120/268 (45%), Gaps = 44/268 (16%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MW +VL L + PVR+GL +LM++R RP LL + GG T+ ++ +++L T
Sbjct 1 MWGSVLGLGMLAALNPVRLGLALLMISRPRPGSSLLAYWIGGLTVCVPELLIPVLLLNFT 60
Query 61 PLAGH---------FSVAEVQIGTGLIALLIAFALTTNVIGKHV---------------- 95
P+ GH ++ ++QIG G++ L IA LT +
Sbjct 61 PMFGHPSHASPSTGLALGKIQIGLGVVGLSIAAVLTVRFAARQRAAAPPPDDRTSELSAA 120
Query 96 --------RRATHAR-VGDDGGRVLRESVPPSGAHKLAVRARCFLQGDSLYVAGVSGLGA 146
R T A+ V D VLR +L R + + +VA V G+
Sbjct 121 PGATIAMPRLLTRAQDVSPDDRSVLR---------RLLGRMHSAWESGASWVAWVIGV-I 170
Query 147 ALPSANYMGAMAAILASGATPATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAAL 206
++P + +A I ASGA+ Q A V F V+ + V EV LV YLA P KT++ + L
Sbjct 171 SVPVDGVLFIVAIIAASGASVTAQVSASVAFVVLMYAVVEVILVGYLATPGKTQSLLLVL 230
Query 207 QSWLRSRSRRDAALLVAAGGCLMLTLGL 234
W+R+ R+ L G L GL
Sbjct 231 HDWVRTYHRQILVALFTVVGVSQLAQGL 258
>gi|342860689|ref|ZP_08717339.1| hypothetical protein MCOL_17498 [Mycobacterium colombiense CECT
3035]
gi|342131713|gb|EGT84970.1| hypothetical protein MCOL_17498 [Mycobacterium colombiense CECT
3035]
Length=264
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 87/268 (33%), Positives = 126/268 (48%), Gaps = 35/268 (13%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MW +VL L + PVR+GL +LM++R RP LL + GG T+ ++ L++L T
Sbjct 1 MWGSVLGLGILAALNPVRLGLALLMISRPRPGPSLLAYWLGGLTVCIPELLIPLLLLNFT 60
Query 61 PLAGHFS-----------VAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDG-- 107
P+ GH + + ++QIG G++ L IA LT + VR T V +D
Sbjct 61 PMFGHVAHGSASPSTNSALGKIQIGLGVVGLSIAAVLTVRFL---VRPRTPQPVPEDARS 117
Query 108 -----------------GRVLRESV-PPSGAHKLAVRARCFLQGDSLYVAGVSGLGAALP 149
RV ESV PS +L R + S +VA V G+ ++P
Sbjct 118 PEMSMVSGAPIPMPRLLTRVPEESVRNPSPVRRLLNRIHDAWESGSSWVAWVIGI-ISVP 176
Query 150 SANYMGAMAAILASGATPATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSW 209
+ +A I ASGA+ + QA A V F ++ + V EV LV Y+ AP KT+ + L +W
Sbjct 177 VDGVLFIVAIIAASGASVSAQASASVAFILLMYAVVEVILVGYVVAPAKTQTLLLVLHNW 236
Query 210 LRSRSRRDAALLVAAGGCLMLTLGLSNL 237
+RS R L G L GL L
Sbjct 237 VRSYHRHILVALFTVVGVSQLAQGLHVL 264
>gi|254775512|ref|ZP_05217028.1| hypothetical protein MaviaA2_12706 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=252
Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/256 (30%), Positives = 114/256 (45%), Gaps = 48/256 (18%)
Query 15 EPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGATPLAGHFSVA----- 69
PVR+GL +LM++R RP LL + GG T+ ++ +++L TP+ GH S A
Sbjct 6 NPVRLGLALLMISRPRPGPSLLAYWIGGLTVCVPELLIPVLLLNFTPMFGHPSHASPSTG 65
Query 70 ----EVQIGTGLIALLIAFALT---------------------------TNVIGKHVRRA 98
++QIG G++ L IA LT T + + + RA
Sbjct 66 SALGKIQIGLGVVGLSIAAVLTVRFAARQRAAAPPPDERASELSAAPGATIAMPRLLTRA 125
Query 99 THARVGDDGGRVLRESVPPSGAHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMA 158
GD VLR ++ R + + +VA V G+ ++P + +A
Sbjct 126 QDVSPGDRS--VLR---------RMLARMHSAWESGASWVAWVIGV-ISVPVDGVLFIVA 173
Query 159 AILASGATPATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDA 218
I ASGA+ Q A V F V+ + V EV LV YLA P KT++ + L W+R+ R+
Sbjct 174 IIAASGASVTAQVSASVAFVVLMYAVVEVILVGYLATPGKTQSLLLVLHDWVRTYHRQIL 233
Query 219 ALLVAAGGCLMLTLGL 234
L G L GL
Sbjct 234 VALFTVVGVSQLAQGL 249
>gi|118468883|ref|YP_884816.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155]
gi|46810982|gb|AAT01808.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155]
gi|118170170|gb|ABK71066.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155]
Length=272
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/273 (31%), Positives = 122/273 (45%), Gaps = 43/273 (15%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MWS +L LAL V P+ +G ++L+L+R RP+ +L+ F G + ++ L VL A
Sbjct 1 MWSDILGLALFVSLNPLLLGFILLVLSRPRPVPNLVVFWVGCLIVNVPGFLIPLFVLRAV 60
Query 61 PLAGHFS-----------VAEVQIGTGLIALLIAFALTTNVIGKHVRRATHA-RVG---- 104
P F+ + Q+GTG+ AL ++ + + K RRA VG
Sbjct 61 PSFAEFAEDLTTADPSSGIEPFQLGTGIFALAVSAVIALRMWVK--RRANQPVLVGSGAG 118
Query 105 -----DDGGRVL-----RESVPPSGAHKLAVRARCFLQ-----------GDSLYVAGVSG 143
DD ++ RE+ P ++ +R R LQ +L+VA V G
Sbjct 119 DRGPTDDASTLVLDSGAREAREPGAIARMILRMRSALQRLVSRLHQEWENGALWVALVFG 178
Query 144 LGAALPSANYMGAMAAILASGATPATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFM 203
L P + I SGA TQ +AV F + V E+ L+SY+ APR+T+A +
Sbjct 179 LAYIPPPPLVLLVDTIIGGSGAPIGTQIIAVFVFIMAMLAVFEITLLSYVIAPRRTQAVL 238
Query 204 AALQSWLRSRSRRDAALLVAAG--GCLMLTLGL 234
L W S R LLV G G L +GL
Sbjct 239 EPLHEW--SHRHRQMILLVLFGAVGIWELIVGL 269
>gi|169631175|ref|YP_001704824.1| hypothetical protein MAB_4097c [Mycobacterium abscessus ATCC
19977]
gi|146760172|emb|CAJ77717.1| gap protein [Mycobacterium abscessus]
gi|169243142|emb|CAM64170.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=267
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/245 (26%), Positives = 108/245 (45%), Gaps = 30/245 (12%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MW +L LA + PV +GL++++++R RP+ +LL F G + ++ L L
Sbjct 1 MWRELLGLAFLMSLNPVLLGLILVVISRPRPVQNLLAFWVGALVVNVPSFVIALFALHMV 60
Query 61 PLAGHF-----------SVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHAR-VGDDGG 108
P F S+ +Q+GTG++ ++IA + T + + A G D
Sbjct 61 PSFASFAKNLATADPGSSIKPLQLGTGVLCVVIAVWIATRLRSRQRENQPVATGAGGDSS 120
Query 109 RVLRESVPP------------------SGAHKLAVRARCFLQGDSLYVAGVSGLGAALPS 150
++ +S P S +L R + + +L+VA V G+G P
Sbjct 121 VLVLDSEAPAVEARPVGRIRGAVSYLGSTFQRLLHRGKGAWENGALWVALVLGIGYMPPP 180
Query 151 ANYMGAMAAILASGATPATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWL 210
+ I+ SG +TQ +A V F V E+ L+SY+ AP +T+A + + +W
Sbjct 181 PLVLLVDTIIVGSGTAMSTQVIAAVVFVFTMLAVFEIALISYVIAPARTQAVLEPIHNWA 240
Query 211 RSRSR 215
S +
Sbjct 241 LSHRQ 245
>gi|146760135|emb|CAJ77697.1| gap protein [Mycobacterium chelonae]
Length=267
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/255 (27%), Positives = 113/255 (45%), Gaps = 38/255 (14%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MW +L LA + PV +GL++++++R RP+ +LL F G + +V L L
Sbjct 1 MWRELLGLAFLMSLNPVLLGLILVVISRPRPVQNLLAFWVGALIVNVPSFLVALFALHLV 60
Query 61 PLAGHF-----------SVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARV-----G 104
P F SV +Q+GTG++ +++A + + R+ + V G
Sbjct 61 PSFASFAKNLATADPGSSVKPLQLGTGVLCIVLAVVIAVRL---RSRKRENQPVAAGGGG 117
Query 105 DDGGRVLRESVPPSGAHKLA-VRA----------RCFLQGD------SLYVAGVSGLGAA 147
D VL P + + +R+ R F G +L+VA V G+G
Sbjct 118 DSSVLVLDPETPTAEPQSVGRIRSAIAVVVSKFRRLFHHGKGAWENGALWVALVLGIGYM 177
Query 148 LPSANYMGAMAAILASGATPATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQ 207
P + I+ SG + TQ LA + F V EV L+SY+ AP +T+A + +
Sbjct 178 PPPPLVLLVDTIIVGSGTSMGTQILAAIVFVFAMLAVFEVALISYVIAPARTQAVLEPVH 237
Query 208 SWLRSRSRRDAALLV 222
+W + + R LL+
Sbjct 238 NW--ALAHRQLVLLI 250
>gi|169631770|ref|YP_001705419.1| hypothetical protein MAB_4697 [Mycobacterium abscessus ATCC 19977]
gi|169243737|emb|CAM64765.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=262
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/262 (26%), Positives = 116/262 (45%), Gaps = 31/262 (11%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
MW +VL L + V P+R+G+ +L+++R +P+ +LL + G ++ L +L T
Sbjct 1 MWGSVLALVVLVALNPIRLGITLLVISRPKPVPNLLVYWAGCLIGCIPAVVLPLTLLHVT 60
Query 61 PLAGHF--------SVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGRVLR 112
P+ F ++ +Q+G GL+AL +A + T + + +R H + +
Sbjct 61 PVFRSFAEGVAISPTIRHIQVGMGLLALSVAVLIATRPLLR--QRQYHMAISGNVPPTDA 118
Query 113 ESVPP------------------SGAHKLAVRARCFLQGDSLYVAGVSGL--GAALPSAN 152
+S P S ++ RA + SL+VA GL G P A
Sbjct 119 DSPAPNPLSRLLGHADDDTSQDRSPFRRMLNRATFAWETGSLWVAFAIGLLLGGIEPDAG 178
Query 153 YMGAMAAILASGATPATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRS 212
+A ++ SGA ATQ + F + + E+ L+SYL AP KT A + + W +
Sbjct 179 LF-LIAILVTSGANTATQIIVAAVFALGVLAIVELTLISYLVAPTKTHAVVQRVHDWALT 237
Query 213 RSRRDAALLVAAGGCLMLTLGL 234
R+ + G +L GL
Sbjct 238 HRRKILIAMCMVAGISLLIHGL 259
>gi|169631771|ref|YP_001705420.1| hypothetical protein MAB_4698 [Mycobacterium abscessus ATCC 19977]
gi|169243738|emb|CAM64766.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=310
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/264 (26%), Positives = 112/264 (43%), Gaps = 34/264 (12%)
Query 1 MWSTVLVLALSVICEPVRIGLVVLMLNRRRPLLHLLTFLCGGYTMAGGVAMVTLVVLGAT 60
+W +L +A+ PV + ++VLM++R RP+ +L + G ++ +V L VL
Sbjct 52 VWGLLLAMAIMFAVNPVLLAVIVLMISRPRPVQNLAAYWLGSMIVSLAGLLVPLAVLHVA 111
Query 61 PLAGHF-----------SVAEVQIGTGLIALLIAFALTTNVIGKHVRRATHARVGDDGGR 109
P F + V +G GL+ L IA L + +R TH V
Sbjct 112 PSFRSFVENMAVPGSNVTTRVVNLGMGLLMLSIATLLAV----RALRERTHIPVAASNVP 167
Query 110 VLRESVPPSGAHKLAVRARC------------------FLQGDSLYVAGVSGLGAALPSA 151
+ P V + + QG +L+VA V GL P
Sbjct 168 TVDSEKPRPITSPFGVSSNSGVAAGSIFRRVLRHLQIAWEQG-ALWVAFVFGLCGLPPPM 226
Query 152 NYMGAMAAILASGATPATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLR 211
+ + ++ASG+T TQ +AV+ F FTVAE+ L+ YL AP +T A + L W
Sbjct 227 LVIFVLTPVVASGSTIGTQIIAVIAFVFGMFTVAELTLICYLIAPARTIAVLQPLHDWAL 286
Query 212 SRSRRDAALLVAAGGCLMLTLGLS 235
+ R+ + + G + + G++
Sbjct 287 AHRRQMLITIFSIAGIIQVINGVA 310
>gi|256395389|ref|YP_003116953.1| hypothetical protein Caci_6258 [Catenulispora acidiphila DSM
44928]
gi|256361615|gb|ACU75112.1| hypothetical protein Caci_6258 [Catenulispora acidiphila DSM
44928]
Length=213
Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/107 (32%), Positives = 49/107 (46%), Gaps = 0/107 (0%)
Query 131 LQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVVTFNVVAFTVAEVPLV 190
L+ L A + GL PS Y+ A+ +I T A +V+ V AEVP++
Sbjct 106 LREPRLTTAVMLGLVVGTPSPMYLLALHSISQGKPTVGVGAFSVILIAAVVLLAAEVPIL 165
Query 191 SYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
+YL AP +T + + A WL R AA A GC + G+ L
Sbjct 166 TYLIAPERTHSTLRAANIWLARNGRVIAAAAAAGVGCYFMIKGIVGL 212
>gi|149916917|ref|ZP_01905418.1| phosphoenolpyruvate synthase [Plesiocystis pacifica SIR-1]
gi|149822195|gb|EDM81586.1| phosphoenolpyruvate synthase [Plesiocystis pacifica SIR-1]
Length=235
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/123 (30%), Positives = 62/123 (51%), Gaps = 11/123 (8%)
Query 109 RVLRESVPPS---GAHKLAVRARCFLQGDSLYVAGVSGLGAALPSAN------YMGAMAA 159
RV R PP+ G + + F D L +A G GAALP N Y+ A+A
Sbjct 95 RVWRR--PPASLGGEDDDSFLGQVFATLDELPLARALGFGAALPLLNVKNLAIYLPAVAL 152
Query 160 ILASGATPATQALAVVTFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWLRSRSRRDAA 219
+ ++ TP +ALAVV+ + +PL+ + PR+ ++AA++ W+ + + R A
Sbjct 153 LASAELTPTGRALAVVSSAAIFSGGLLIPLLIRVLFPRRCADWLAAMRRWIEAHATRVAQ 212
Query 220 LLV 222
+++
Sbjct 213 VIL 215
>gi|256393015|ref|YP_003114579.1| hypothetical protein Caci_3840 [Catenulispora acidiphila DSM
44928]
gi|256359241|gb|ACU72738.1| hypothetical protein Caci_3840 [Catenulispora acidiphila DSM
44928]
Length=211
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/95 (32%), Positives = 45/95 (48%), Gaps = 6/95 (6%)
Query 116 PPSGAHKLAVRARCFLQGDSLYVAGVSGLGAALPSANYMGAMAAILASGATPATQALAVV 175
PP A A R R +G L V G+ GL PS Y+ ++ +I P + V+
Sbjct 94 PP--AEPKAARQR---EGRLLVVVGL-GLFMGSPSPFYLASIHSIAKGAPGPVLGVVDVL 147
Query 176 TFNVVAFTVAEVPLVSYLAAPRKTRAFMAALQSWL 210
V +AEVP++ YL AP++T + + WL
Sbjct 148 VIAAVVLLLAEVPIICYLYAPQRTATTLRTVNGWL 182
>gi|111021272|ref|YP_704244.1| hypothetical protein RHA1_ro04295 [Rhodococcus jostii RHA1]
gi|110820802|gb|ABG96086.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=262
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/110 (28%), Positives = 53/110 (49%), Gaps = 6/110 (5%)
Query 134 DSLYVAGVSGLGAALPSAN------YMGAMAAILASGATPATQALAVVTFNVVAFTVAEV 187
D L +GLG AL + N + A I +G + Q +A++ + V+A + V
Sbjct 152 DDLNFVKSTGLGFALAAINPKNLLLCVSAGVGIGTAGVSGGEQVVALIVYTVLAGSTVLV 211
Query 188 PLVSYLAAPRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
P+++Y A K R + L+ WL+S + ++L+ G ++L G L
Sbjct 212 PVIAYAVAADKMRGTLDNLKVWLQSNNAAVMSVLLLVMGAVVLGKGFGGL 261
>gi|229491566|ref|ZP_04385387.1| putative membrane protein [Rhodococcus erythropolis SK121]
gi|229321247|gb|EEN87047.1| putative membrane protein [Rhodococcus erythropolis SK121]
Length=219
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query 143 GLGAALPSANYMGAMAAILASGATPATQAL-------AVVTFNVVAFTVAEVPLVSYLAA 195
GLG AL + N M I A+G + + +L A++ F ++A VP++ YL A
Sbjct 119 GLGFALAAINPKNLMMCI-AAGISIGSASLGSGEVVVAILVFTIIAACTVCVPVIGYLVA 177
Query 196 PRKTRAFMAALQSWLRSRSRRDAALLVAAGGCLMLTLGLSNL 237
+ R +A L+ WL+ + ++L+ G +++ G+ L
Sbjct 178 AERLRGPLAKLKVWLQDNNATVMSVLILVIGVVLIGKGIGGL 219
>gi|120402653|ref|YP_952482.1| histidine kinase [Mycobacterium vanbaalenii PYR-1]
gi|119955471|gb|ABM12476.1| histidine kinase [Mycobacterium vanbaalenii PYR-1]
Length=308
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/131 (33%), Positives = 55/131 (42%), Gaps = 33/131 (25%)
Query 19 IGLVVLMLNRRRP------LLHLLTFLCGGYTMAGGVAMVTLVVLGATPLAGHFSVAEVQ 72
+G V + R RP L H LT LC Y A GV++VT V GH A++
Sbjct 165 LGEVRDIARRLRPDALDLGLAHALTALCNEYARATGVSVVTHV--------GHLP-AQLD 215
Query 73 IGTGLIALLIAFALTTNVIGKHVRR-----ATHA-------RVGDDGGRVLRESVPPSGA 120
L+ IA TNV +H R HA R+ DDGG ++RE GA
Sbjct 216 PQIELVCYRIAQESLTNV-ARHARPRKVWVEAHAASDELVMRIADDGGGIIRE-----GA 269
Query 121 HKLAVRARCFL 131
+R R L
Sbjct 270 GIRGMRERALL 280
Lambda K H
0.326 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 322714888716
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40