BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3833 Length=263 Score E Sequences producing significant alignments: (Bits) Value gi|15610969|ref|NP_218350.1| AraC family transcriptional regulat... 535 3e-150 gi|15843457|ref|NP_338494.1| AraC family transcriptional regulat... 534 6e-150 gi|289755966|ref|ZP_06515344.1| transcriptional regulatory prote... 533 1e-149 gi|340628802|ref|YP_004747254.1| transcriptional regulatory prot... 531 4e-149 gi|289441271|ref|ZP_06431015.1| transcriptional regulator, araC-... 530 9e-149 gi|342860086|ref|ZP_08716738.1| AraC family transcriptional regu... 410 7e-113 gi|254822672|ref|ZP_05227673.1| transcriptional regulator, AraC ... 409 3e-112 gi|296166961|ref|ZP_06849377.1| AraC family transcriptional regu... 408 3e-112 gi|118466816|ref|YP_879488.1| AraC family transcriptional regula... 399 2e-109 gi|41406296|ref|NP_959132.1| hypothetical protein MAP0198c [Myco... 396 2e-108 gi|169628430|ref|YP_001702079.1| AraC family transcriptional reg... 256 2e-66 gi|317509283|ref|ZP_07966903.1| AraC family bacterial regulatory... 255 5e-66 gi|262202751|ref|YP_003273959.1| AraC family transcriptional reg... 231 8e-59 gi|326778780|ref|ZP_08238045.1| transcriptional regulator with c... 230 2e-58 gi|182438130|ref|YP_001825849.1| AraC family transcriptional reg... 229 2e-58 gi|291297816|ref|YP_003509094.1| AraC family transcriptional reg... 229 4e-58 gi|302547404|ref|ZP_07299746.1| AraC family transcriptional regu... 228 1e-57 gi|134100507|ref|YP_001106168.1| AraC family transcription regul... 227 1e-57 gi|29827194|ref|NP_821828.1| AraC family transcription regulator... 222 4e-56 gi|344999257|ref|YP_004802111.1| AraC family transcriptional reg... 221 7e-56 gi|337763580|emb|CCB72288.1| putative AraC-family transcriptiona... 221 1e-55 gi|239988374|ref|ZP_04709038.1| AraC family transcriptional regu... 219 2e-55 gi|291445359|ref|ZP_06584749.1| AraC-family transcriptional regu... 219 3e-55 gi|320006912|gb|ADW01762.1| transcriptional regulator, AraC fami... 216 4e-54 gi|297156273|gb|ADI05985.1| AraC family transcription regulator ... 213 2e-53 gi|126348039|emb|CAJ89759.1| putative AraC-family transcriptiona... 212 6e-53 gi|291442445|ref|ZP_06581835.1| LOW QUALITY PROTEIN: AraC-family... 208 8e-52 gi|331695768|ref|YP_004332007.1| AraC family transcriptional reg... 206 2e-51 gi|302539082|ref|ZP_07291424.1| AraC family transcription regula... 204 1e-50 gi|345011514|ref|YP_004813868.1| transcriptional regulator with ... 204 2e-50 gi|294632818|ref|ZP_06711377.1| AraC family transcriptional regu... 203 2e-50 gi|345003474|ref|YP_004806328.1| AraC family transcriptional reg... 202 3e-50 gi|271964635|ref|YP_003338831.1| AraC family transcriptional reg... 202 4e-50 gi|21225625|ref|NP_631404.1| AraC family transcription regulator... 202 4e-50 gi|297196658|ref|ZP_06914056.1| AraC-family transcriptional regu... 199 4e-49 gi|302556632|ref|ZP_07308974.1| AraC family transcriptional regu... 197 1e-48 gi|284030535|ref|YP_003380466.1| AraC family transcriptional reg... 194 1e-47 gi|329937916|ref|ZP_08287398.1| AraC family transcriptional regu... 192 4e-47 gi|257070217|ref|YP_003156472.1| transcriptional regulator conta... 186 3e-45 gi|256390679|ref|YP_003112243.1| AraC family transcriptional reg... 182 6e-44 gi|158314170|ref|YP_001506678.1| AraC family transcriptional reg... 175 5e-42 gi|333913434|ref|YP_004487166.1| AraC family transcriptional reg... 173 3e-41 gi|300783218|ref|YP_003763509.1| AraC family transcriptional reg... 171 1e-40 gi|312198273|ref|YP_004018334.1| AraC family transcriptional reg... 170 3e-40 gi|300786530|ref|YP_003766821.1| AraC family transcriptional reg... 169 5e-40 gi|318061188|ref|ZP_07979909.1| transcriptional regulator contai... 164 1e-38 gi|76804014|gb|ABA55957.1| AraC-type DNA-binding domain-containi... 163 3e-38 gi|302518968|ref|ZP_07271310.1| AraC-family transcriptional regu... 161 9e-38 gi|331697067|ref|YP_004333306.1| AraC family transcriptional reg... 160 2e-37 gi|326332775|ref|ZP_08199036.1| transcriptional regulator, AraC ... 159 3e-37 >gi|15610969|ref|NP_218350.1| AraC family transcriptional regulator [Mycobacterium tuberculosis H37Rv] gi|148663701|ref|YP_001285224.1| AraC family transcription regulator [Mycobacterium tuberculosis H37Ra] gi|167969948|ref|ZP_02552225.1| AraC-family transcriptional regulator [Mycobacterium tuberculosis H37Ra] 10 more sequence titles Length=263 Score = 535 bits (1378), Expect = 3e-150, Method: Compositional matrix adjust. Identities = 263/263 (100%), Positives = 263/263 (100%), Gaps = 0/263 (0%) Query 1 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP 60 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP Sbjct 1 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP 60 Query 61 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHH 120 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHH Sbjct 61 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHH 120 Query 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL 180 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL Sbjct 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL 180 Query 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT Sbjct 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 Query 241 PGQAAKPMAATRLTRLRRARDRR 263 PGQAAKPMAATRLTRLRRARDRR Sbjct 241 PGQAAKPMAATRLTRLRRARDRR 263 >gi|15843457|ref|NP_338494.1| AraC family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|31795007|ref|NP_857500.1| AraC family transcriptional regulator [Mycobacterium bovis AF2122/97] gi|121639751|ref|YP_979975.1| AraC family transcriptional regulator [Mycobacterium bovis BCG str. Pasteur 1173P2] 57 more sequence titles Length=263 Score = 534 bits (1375), Expect = 6e-150, Method: Compositional matrix adjust. Identities = 262/263 (99%), Positives = 263/263 (100%), Gaps = 0/263 (0%) Query 1 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP 60 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP Sbjct 1 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP 60 Query 61 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHH 120 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMREL+IACSQADRTDTDEHH Sbjct 61 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELIIACSQADRTDTDEHH 120 Query 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL 180 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL Sbjct 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL 180 Query 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT Sbjct 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 Query 241 PGQAAKPMAATRLTRLRRARDRR 263 PGQAAKPMAATRLTRLRRARDRR Sbjct 241 PGQAAKPMAATRLTRLRRARDRR 263 >gi|289755966|ref|ZP_06515344.1| transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|289696553|gb|EFD63982.1| transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] Length=263 Score = 533 bits (1373), Expect = 1e-149, Method: Compositional matrix adjust. Identities = 261/263 (99%), Positives = 263/263 (100%), Gaps = 0/263 (0%) Query 1 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP 60 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP Sbjct 1 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP 60 Query 61 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHH 120 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMREL+IACSQADRTDTDEHH Sbjct 61 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELIIACSQADRTDTDEHH 120 Query 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL 180 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADN+TQPLTLQQIGGRIGVSQRTL Sbjct 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNVTQPLTLQQIGGRIGVSQRTL 180 Query 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT Sbjct 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 Query 241 PGQAAKPMAATRLTRLRRARDRR 263 PGQAAKPMAATRLTRLRRARDRR Sbjct 241 PGQAAKPMAATRLTRLRRARDRR 263 >gi|340628802|ref|YP_004747254.1| transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] gi|340006992|emb|CCC46183.1| transcriptional regulatory protein (probably ARAC-family) [Mycobacterium canettii CIPT 140010059] Length=263 Score = 531 bits (1368), Expect = 4e-149, Method: Compositional matrix adjust. Identities = 261/263 (99%), Positives = 262/263 (99%), Gaps = 0/263 (0%) Query 1 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP 60 MSENSHH LATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP Sbjct 1 MSENSHHGLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP 60 Query 61 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHH 120 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMREL+IACSQADRTDTDEHH Sbjct 61 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELIIACSQADRTDTDEHH 120 Query 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL 180 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL Sbjct 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL 180 Query 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT Sbjct 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 Query 241 PGQAAKPMAATRLTRLRRARDRR 263 PGQAAKPMAATRLTRLRRARDRR Sbjct 241 PGQAAKPMAATRLTRLRRARDRR 263 >gi|289441271|ref|ZP_06431015.1| transcriptional regulator, araC-family [Mycobacterium tuberculosis T46] gi|289572086|ref|ZP_06452313.1| transcriptional regulator, araC-family [Mycobacterium tuberculosis T17] gi|289748364|ref|ZP_06507742.1| transcriptional regulator, araC-family [Mycobacterium tuberculosis T92] gi|289414190|gb|EFD11430.1| transcriptional regulator, araC-family [Mycobacterium tuberculosis T46] gi|289545840|gb|EFD49488.1| transcriptional regulator, araC-family [Mycobacterium tuberculosis T17] gi|289688951|gb|EFD56380.1| transcriptional regulator, araC-family [Mycobacterium tuberculosis T92] Length=263 Score = 530 bits (1365), Expect = 9e-149, Method: Compositional matrix adjust. Identities = 260/263 (99%), Positives = 262/263 (99%), Gaps = 0/263 (0%) Query 1 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP 60 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWIT VNRAIWIP Sbjct 1 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITLVNRAIWIP 60 Query 61 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHH 120 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMREL+IACSQADRTDTDEHH Sbjct 61 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELIIACSQADRTDTDEHH 120 Query 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL 180 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADN+TQPLTLQQIGGRIGVSQRTL Sbjct 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNVTQPLTLQQIGGRIGVSQRTL 180 Query 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT Sbjct 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 Query 241 PGQAAKPMAATRLTRLRRARDRR 263 PGQAAKPMAATRLTRLRRARDRR Sbjct 241 PGQAAKPMAATRLTRLRRARDRR 263 >gi|342860086|ref|ZP_08716738.1| AraC family transcriptional regulator [Mycobacterium colombiense CECT 3035] gi|342132464|gb|EGT85693.1| AraC family transcriptional regulator [Mycobacterium colombiense CECT 3035] Length=249 Score = 410 bits (1055), Expect = 7e-113, Method: Compositional matrix adjust. Identities = 198/245 (81%), Positives = 216/245 (89%), Gaps = 0/245 (0%) Query 1 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP 60 MSE HH +AT+S TLPPGA+IERHRHP HQIVYPS+GAVSVTT AGTWITP NRAIWIP Sbjct 1 MSEFRHHGVATSSQTLPPGAQIERHRHPLHQIVYPSSGAVSVTTPAGTWITPANRAIWIP 60 Query 61 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHH 120 AGCWH+HKFHG TQFHGVALDP RYR GPA P VLAVNPLMREL+IACSQ D TDTD+HH Sbjct 61 AGCWHEHKFHGTTQFHGVALDPHRYRRGPAAPAVLAVNPLMRELIIACSQTDGTDTDQHH 120 Query 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL 180 RMLAVL DQ+ TS+ PLWVP+P D RLR ACALIADNL + LTL+QIG R+GV QRTL Sbjct 121 RMLAVLHDQVQATSVVGPLWVPTPVDSRLRQACALIADNLRESLTLKQIGDRVGVGQRTL 180 Query 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 SRLFSDEL MTFPQWRTQ+RLQHALVLLAER DVTSVA+ECGWATPSAFID+YR+AFGHT Sbjct 181 SRLFSDELAMTFPQWRTQVRLQHALVLLAERRDVTSVAAECGWATPSAFIDSYRRAFGHT 240 Query 241 PGQAA 245 PG+ A Sbjct 241 PGRLA 245 >gi|254822672|ref|ZP_05227673.1| transcriptional regulator, AraC family protein [Mycobacterium intracellulare ATCC 13950] Length=248 Score = 409 bits (1050), Expect = 3e-112, Method: Compositional matrix adjust. Identities = 198/245 (81%), Positives = 215/245 (88%), Gaps = 0/245 (0%) Query 1 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP 60 MSE SHH L T++ TLPPGARIERHRHP HQIVYPS+GAVSVTT AGTWITP NRAIWIP Sbjct 1 MSEVSHHGLVTSAQTLPPGARIERHRHPQHQIVYPSSGAVSVTTPAGTWITPANRAIWIP 60 Query 61 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHH 120 AGCWH+HKFHG TQFHGVALDP RYR GP P VLAV+PLMREL+IACSQAD T+T EHH Sbjct 61 AGCWHEHKFHGTTQFHGVALDPGRYRRGPRAPAVLAVSPLMRELIIACSQADGTETAEHH 120 Query 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL 180 RMLAVL DQ+ T + EPLW+P+P D RLR ACALIADNL +PLTLQQIG R+GV QRTL Sbjct 121 RMLAVLHDQVRATGVAEPLWIPTPVDPRLRRACALIADNLREPLTLQQIGDRVGVGQRTL 180 Query 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 SRLFSDEL MTFPQWRTQ+RLQHALVLLA+R DVTSVA+ECGWAT SAFIDTYR+AFGHT Sbjct 181 SRLFSDELAMTFPQWRTQVRLQHALVLLADRRDVTSVAAECGWATASAFIDTYRRAFGHT 240 Query 241 PGQAA 245 PGQ A Sbjct 241 PGQLA 245 >gi|296166961|ref|ZP_06849377.1| AraC family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897700|gb|EFG77290.1| AraC family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=246 Score = 408 bits (1049), Expect = 3e-112, Method: Compositional matrix adjust. Identities = 194/242 (81%), Positives = 213/242 (89%), Gaps = 0/242 (0%) Query 1 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP 60 MSE HH LAT+S LPPGARIERHRHP HQIVYPS+GAVSVTT AGTWITP NRAIWIP Sbjct 1 MSEIGHHGLATSSQALPPGARIERHRHPLHQIVYPSSGAVSVTTAAGTWITPANRAIWIP 60 Query 61 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHH 120 AGCWH+H+FHGHT+FHGVALDP RYR GPATP VLAVNPLMREL+IACSQ RTDTDEHH Sbjct 61 AGCWHEHRFHGHTRFHGVALDPGRYRRGPATPAVLAVNPLMRELIIACSQTGRTDTDEHH 120 Query 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL 180 RMLAVL DQL TSI EPLW+P+PTD RLR ACALI D+L P+TL+Q+ GR+G SQRTL Sbjct 121 RMLAVLHDQLQATSIHEPLWIPTPTDSRLRQACALITDDLATPVTLRQVAGRVGASQRTL 180 Query 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 SRLF+DELGMT+PQWRTQ+RLQHAL+LLAE H VT+VA CGWA PSAFIDTYR+AFGHT Sbjct 181 SRLFADELGMTYPQWRTQVRLQHALMLLAENHGVTAVALACGWAAPSAFIDTYRRAFGHT 240 Query 241 PG 242 PG Sbjct 241 PG 242 >gi|118466816|ref|YP_879488.1| AraC family transcriptional regulator [Mycobacterium avium 104] gi|254773253|ref|ZP_05214769.1| transcriptional regulator, AraC family protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118168103|gb|ABK69000.1| transcriptional regulator, AraC family protein [Mycobacterium avium 104] Length=249 Score = 399 bits (1026), Expect = 2e-109, Method: Compositional matrix adjust. Identities = 195/245 (80%), Positives = 209/245 (86%), Gaps = 0/245 (0%) Query 1 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP 60 MSE H LAT++ TLPPGARI RHRHP HQIVYPS GAVSVTT AGTWITP NRAIWIP Sbjct 1 MSEIGQHGLATSAQTLPPGARIARHRHPLHQIVYPSTGAVSVTTPAGTWITPANRAIWIP 60 Query 61 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHH 120 AGCWH+HKFHGHT FHGVALDP RYR GPA P VLAV PLMREL+IACS+A TD HH Sbjct 61 AGCWHEHKFHGHTNFHGVALDPARYRRGPAAPAVLAVTPLMRELIIACSRARDTDAGAHH 120 Query 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL 180 RMLAVL DQL TS+ EPLW+P+ D RLR ACALIADNL +PLTL+QIG RIGV QRTL Sbjct 121 RMLAVLHDQLQATSVAEPLWIPTAVDGRLRAACALIADNLREPLTLRQIGERIGVGQRTL 180 Query 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 SRLF DEL MTFPQWRTQ+RLQHALVLLAER DVTSVA+ECGWATPSAFIDTYR+AFGHT Sbjct 181 SRLFRDELAMTFPQWRTQVRLQHALVLLAERRDVTSVAAECGWATPSAFIDTYRRAFGHT 240 Query 241 PGQAA 245 PG+ A Sbjct 241 PGRLA 245 >gi|41406296|ref|NP_959132.1| hypothetical protein MAP0198c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394644|gb|AAS02515.1| hypothetical protein MAP_0198c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336461884|gb|EGO40739.1| DNA-binding domain-containing protein, AraC-type [Mycobacterium avium subsp. paratuberculosis S397] Length=249 Score = 396 bits (1018), Expect = 2e-108, Method: Compositional matrix adjust. Identities = 193/245 (79%), Positives = 208/245 (85%), Gaps = 0/245 (0%) Query 1 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP 60 MSE H LAT++ TLPPGARI RHRHP HQIVYPS GAVSVTT AGTWITP NRAIWIP Sbjct 1 MSEIGQHGLATSAQTLPPGARIARHRHPLHQIVYPSTGAVSVTTPAGTWITPANRAIWIP 60 Query 61 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHH 120 AGCWH+HKFHGHT FHGVALDP RYR GPA P VLAV PLMREL+IACS+A TD H Sbjct 61 AGCWHEHKFHGHTNFHGVALDPARYRRGPAAPAVLAVTPLMRELIIACSRARDTDAGAHQ 120 Query 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL 180 RMLAVL DQL TS+ EPLW+P+ D RLR ACAL+ADNL +PLTL+QIG RIGV QRTL Sbjct 121 RMLAVLHDQLQATSVAEPLWIPTAVDGRLRAACALLADNLRKPLTLRQIGERIGVGQRTL 180 Query 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 SRLF DEL MTFPQWRTQ+RLQHALVLLAER DVTSVA+ECGWATPSAFIDTYR+AFGHT Sbjct 181 SRLFRDELAMTFPQWRTQVRLQHALVLLAERRDVTSVAAECGWATPSAFIDTYRRAFGHT 240 Query 241 PGQAA 245 PG+ A Sbjct 241 PGRLA 245 >gi|169628430|ref|YP_001702079.1| AraC family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169240397|emb|CAM61425.1| Putative transcriptional regulator, AraC family [Mycobacterium abscessus] Length=246 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 130/242 (54%), Positives = 168/242 (70%), Gaps = 1/242 (0%) Query 7 HRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQ 66 +R T +++ G RI RH H HQIVYP++G ++VTT GTWI P NRA+WIP+G H+ Sbjct 4 NRHLTGVMSVAGGHRINRHWHQEHQIVYPASGVLAVTTDEGTWIAPPNRALWIPSGAGHE 63 Query 67 HKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVL 126 H+F+G TQFH VA DP Y A+PTV+AV+PL+REL+I CS +E R+ VL Sbjct 64 HRFYGPTQFHSVAFDPGVYPVELASPTVIAVSPLLRELIITCSDPGDLPEEEVARLRVVL 123 Query 127 QDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSD 186 DQL S + L +P+P D RL ACAL+ ++LTQ T+ +G R+G S+RTL+RLF Sbjct 124 IDQL-RHSPEQALRLPTPHDERLAEACALVEEDLTQVWTVADLGRRVGASERTLTRLFRT 182 Query 187 ELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQAAK 246 ++GMT+PQWRTQ+RL HAL LLAE VT VA +CGWATPSAFID YR+ G TPG A Sbjct 183 DMGMTYPQWRTQIRLHHALRLLAEDRPVTYVAHQCGWATPSAFIDVYRRTLGQTPGTYAA 242 Query 247 PM 248 P+ Sbjct 243 PV 244 >gi|317509283|ref|ZP_07966903.1| AraC family bacterial regulatory protein [Segniliparus rugosus ATCC BAA-974] gi|316252339|gb|EFV11789.1| AraC family bacterial regulatory protein [Segniliparus rugosus ATCC BAA-974] Length=251 Score = 255 bits (652), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 129/242 (54%), Positives = 162/242 (67%), Gaps = 1/242 (0%) Query 1 MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP 60 MS+ S R+AT++ G RI RHRH HQIVY S GAV+VTT GTWI P +RA+WIP Sbjct 1 MSDYSQDRVATSANLHEAGERIARHRHRKHQIVYSSRGAVAVTTPKGTWIAPKDRAVWIP 60 Query 61 AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHH 120 A WH+H+F+G+TQFHGVA DP P V+ V PL+REL+IACS+++R DE Sbjct 61 ANTWHEHRFYGNTQFHGVAFDPSDCGDDRPRPAVVTVTPLLRELIIACSESERLAHDEAA 120 Query 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL 180 R+ AVL DQL PL + +P D RL A +I +L P++L ++ RIG+ +RTL Sbjct 121 RLRAVLLDQLRHCP-EIPLSLAAPQDPRLLRALEIIETSLADPISLDKLAARIGMGERTL 179 Query 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 SR ELGM++PQWR Q+RL HA + LA+ VT A CGWATPSAFID YRQAFG T Sbjct 180 SRAIRAELGMSYPQWRAQIRLFHATIHLAKGSSVTETAVRCGWATPSAFIDAYRQAFGRT 239 Query 241 PG 242 PG Sbjct 240 PG 241 >gi|262202751|ref|YP_003273959.1| AraC family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262086098|gb|ACY22066.1| helix-turn-helix- domain containing protein AraC type [Gordonia bronchialis DSM 43247] Length=259 Score = 231 bits (589), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 117/231 (51%), Positives = 153/231 (67%), Gaps = 1/231 (0%) Query 17 PPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQFH 76 P G RI RH H +HQIVY S+G V VTT AGTW+ P +RAIWIPA WH+H+F+G+T+F+ Sbjct 27 PGGHRIARHHHLTHQIVYASSGLVEVTTQAGTWVAPPDRAIWIPALAWHEHRFYGNTEFN 86 Query 77 GVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSIR 136 V+++P P V+AV L+REL++ S+ R+ +VL DQL T Sbjct 87 CVSIEPSARPFADDAPVVVAVTGLVRELIVEGSRTSDPTCPAQQRLRSVLLDQLRRTD-E 145 Query 137 EPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQWR 196 L + +P+D RL HACA++ +LT+ +L +G +G S+RTLSRL DELG+T+PQWR Sbjct 146 TALSLRTPSDDRLVHACAIVTADLTRNHSLADLGRTVGASKRTLSRLLRDELGLTYPQWR 205 Query 197 TQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQAAKP 247 T +RL AL+LLAE VT VA CGWATPSAFID YR+ GHTPG P Sbjct 206 TSVRLHRALILLAEGAGVTEVAHRCGWATPSAFIDAYRRVLGHTPGSRRAP 256 >gi|326778780|ref|ZP_08238045.1| transcriptional regulator with cupin sensor, AraC family [Streptomyces cf. griseus XylebKG-1] gi|326659113|gb|EGE43959.1| transcriptional regulator with cupin sensor, AraC family [Streptomyces griseus XylebKG-1] Length=304 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 118/227 (52%), Positives = 152/227 (67%), Gaps = 1/227 (0%) Query 16 LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQF 75 L PG I+ HRH HQIVY G ++VTT AG+W+ P RAIW+PAG H H+ +G Sbjct 74 LAPGGSIDAHRHDDHQIVYAGRGVLTVTTSAGSWVAPATRAIWVPAGTVHAHRAYGELDL 133 Query 76 HGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSI 135 H V L G TPTVLAV+PL+REL+IA ++A+ D E R+ AVL DQL S Sbjct 134 HLVGLPVTENPLGLETPTVLAVSPLLRELLIAYTRAEDDDRPERARLRAVLLDQL-RASA 192 Query 136 REPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQW 195 ++PL +P+PT LR C ++ + TL ++G +G S RTLSRLF +LGMTFPQW Sbjct 193 QQPLHLPTPTTPLLRALCDILRADPADSRTLAELGHLVGASDRTLSRLFRSDLGMTFPQW 252 Query 196 RTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPG 242 RTQLRL HAL+LL ER VT+VA +CGW++ SAFI+ +R+ FGHTPG Sbjct 253 RTQLRLHHALILLTERTPVTAVAHQCGWSSTSAFIEVFRRTFGHTPG 299 >gi|182438130|ref|YP_001825849.1| AraC family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466646|dbj|BAG21166.1| putative AraC-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length=288 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 118/227 (52%), Positives = 152/227 (67%), Gaps = 1/227 (0%) Query 16 LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQF 75 L PG I+ HRH HQIVY G ++VTT AG+W+ P RAIW+PAG H H+ +G Sbjct 58 LAPGGSIDAHRHDDHQIVYAGRGVLTVTTSAGSWVAPATRAIWVPAGTVHAHRAYGELDL 117 Query 76 HGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSI 135 H V L G TPTVLAV+PL+REL+IA ++A+ D E R+ AVL DQL S Sbjct 118 HLVGLPVTENPLGLETPTVLAVSPLLRELLIAYTRAEDDDRPERARLRAVLLDQL-RASA 176 Query 136 REPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQW 195 ++PL +P+PT LR C ++ + TL ++G +G S RTLSRLF +LGMTFPQW Sbjct 177 QQPLHLPTPTTPLLRALCDILRADPADSRTLAELGHLVGASDRTLSRLFRSDLGMTFPQW 236 Query 196 RTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPG 242 RTQLRL HAL+LL ER VT+VA +CGW++ SAFI+ +R+ FGHTPG Sbjct 237 RTQLRLHHALILLTERTPVTTVAHQCGWSSTSAFIEVFRRTFGHTPG 283 >gi|291297816|ref|YP_003509094.1| AraC family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567036|gb|ADD40001.1| transcriptional regulator, AraC family [Stackebrandtia nassauensis DSM 44728] Length=246 Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 118/227 (52%), Positives = 152/227 (67%), Gaps = 1/227 (0%) Query 16 LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQF 75 L PG I+ HRH HQIVY + G +++TT G+WI P RAIW+PAG H H+ HG + Sbjct 17 LAPGDVIDAHRHDDHQIVYAARGVLAITTDKGSWIAPATRAIWVPAGTTHAHRAHGDLEL 76 Query 76 HGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSI 135 H V L + A PTVLA+ PL REL++A +++ D+ E R+ AVL DQL T Sbjct 77 HLVGLPARDNPLDLAEPTVLAIGPLTRELILAYTRSPADDSPERARLRAVLLDQLRATP- 135 Query 136 REPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQW 195 ++P+ +P+PTD RL C + + TL +G R+G S+RTLSRLF ELGMTFPQW Sbjct 136 QQPIHLPTPTDPRLSELCDRLRADPADNSTLTVLGRRVGASERTLSRLFKTELGMTFPQW 195 Query 196 RTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPG 242 RTQLRL HALVLLA+ VT+VA CGW++ SAFID +R+AFGHTPG Sbjct 196 RTQLRLYHALVLLADNASVTAVAHTCGWSSTSAFIDAFRRAFGHTPG 242 >gi|302547404|ref|ZP_07299746.1| AraC family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302465022|gb|EFL28115.1| AraC family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length=251 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 123/236 (53%), Positives = 153/236 (65%), Gaps = 2/236 (0%) Query 16 LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQF 75 L PGA I+ HRH HQIVY G ++VTT GTWI P RAIW+PAG H H+ HG + Sbjct 17 LAPGAAIDAHRHDDHQIVYAGRGVLAVTTGTGTWIAPGTRAIWVPAGTVHAHQAHGELEL 76 Query 76 HGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSI 135 H V LD G PTVLAV PL+REL++ + D+ E R+ AVL DQL S Sbjct 77 HLVGLDASDNPLGLDEPTVLAVGPLLRELILVYTHTPHDDSPERGRLRAVLLDQL-RASP 135 Query 136 REPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQW 195 ++PL +P+PT LR C ++ D+ TL +G +G S RTLSR F +LGMTFPQW Sbjct 136 QQPLHLPTPTAPLLRAVCEILRDDPADGRTLAALGREVGASDRTLSRHFKADLGMTFPQW 195 Query 196 RTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQAAKPMAAT 251 RTQLRL HAL+LLAE VTSVA CGW++ SAFID +R+ FGHTPG A +P+ A+ Sbjct 196 RTQLRLYHALILLAEDLPVTSVAHRCGWSSASAFIDVFRRTFGHTPG-AHQPIPAS 250 >gi|134100507|ref|YP_001106168.1| AraC family transcription regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005014|ref|ZP_06562987.1| AraC family transcription regulator [Saccharopolyspora erythraea NRRL 2338] gi|133913130|emb|CAM03243.1| AraC-family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length=258 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 117/231 (51%), Positives = 152/231 (66%), Gaps = 9/231 (3%) Query 16 LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQF 75 LP G+ ++ HRH HQIVY G ++VTT AG+WI P RA+W+PAG H+H+ +G T Sbjct 27 LPAGSGVDAHRHDDHQIVYAGRGVLAVTTEAGSWIAPATRAVWVPAGTVHEHRAYGETDL 86 Query 76 HGVAL----DPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLP 131 H V L +P R ++P V+AV L+REL++A + + D E RM AVL DQL Sbjct 87 HTVGLPTTDNPLRL----SSPAVIAVGSLLRELILAYTAGEHHDDGERSRMRAVLLDQL- 141 Query 132 TTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMT 191 + R+P+ +P+ D RL CA++ D+ P TL +G ++G S RTLSRLF E+GMT Sbjct 142 RHAPRQPIRLPAARDPRLAAVCAILDDDPADPRTLSALGAQVGASDRTLSRLFRAEMGMT 201 Query 192 FPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPG 242 FPQWRTQLRL HAL +LAE VT VA GWAT SAFID +R+AFGHTPG Sbjct 202 FPQWRTQLRLHHALRMLAEGSAVTEVARRSGWATTSAFIDVFRRAFGHTPG 252 >gi|29827194|ref|NP_821828.1| AraC family transcription regulator [Streptomyces avermitilis MA-4680] gi|29604292|dbj|BAC68363.1| putative AraC-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length=263 Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 121/243 (50%), Positives = 157/243 (65%), Gaps = 2/243 (0%) Query 1 MSENSHHRLATT-SLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWI 59 M++ H +A T + L PGA I+ HRH HQIVY G ++VTT AG+W+ P RAIW+ Sbjct 17 MTKIRHEPVAPTRTQRLAPGAAIDPHRHDDHQIVYAGRGVLAVTTSAGSWVAPGTRAIWV 76 Query 60 PAGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEH 119 PAG H H+ HG + H V L TP VLAV+PL+REL++A ++ + E Sbjct 77 PAGTVHAHQAHGELELHLVGLPADENPLALETPAVLAVSPLLRELIVAYTRTQDDHSPER 136 Query 120 HRMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRT 179 R+ AVL DQL S ++PL +P+PT L+ C ++ + TL ++G IG S RT Sbjct 137 ARLRAVLLDQL-RASPQQPLHLPTPTAPLLQTLCDILRADPADSRTLTELGREIGASDRT 195 Query 180 LSRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGH 239 LSRLF ELGMTFPQWRTQLRL HALVLLA+ VT+VA CGW++ SAFID +R+ FGH Sbjct 196 LSRLFRSELGMTFPQWRTQLRLHHALVLLADSTPVTAVAHLCGWSSASAFIDAFRRTFGH 255 Query 240 TPG 242 TPG Sbjct 256 TPG 258 >gi|344999257|ref|YP_004802111.1| AraC family transcriptional regulator [Streptomyces sp. SirexAA-E] gi|344314883|gb|AEN09571.1| transcriptional regulator, AraC family [Streptomyces sp. SirexAA-E] Length=247 Score = 221 bits (564), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 122/243 (51%), Positives = 153/243 (63%), Gaps = 2/243 (0%) Query 1 MSENSHHRLATTSLT-LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWI 59 M E H A T + G IE HRH HQIVY + G V+VTT AGTW+ P NRA+WI Sbjct 1 MQETRHQPTAPTRTRWIASGGAIEAHRHDDHQIVYAARGVVAVTTGAGTWVAPANRAVWI 60 Query 60 PAGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEH 119 PAG H H+ HG + H V L G P VL V PL+REL++A ++A D Sbjct 61 PAGTVHAHQAHGGLELHLVGLPAAHNPLGLHEPAVLTVGPLLRELILATTRAPDGDDPAR 120 Query 120 HRMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRT 179 R+ AVL D+L + S ++P+ +P PT LR CAL+ + P TL ++G +G S RT Sbjct 121 ERLRAVLLDRL-SASPQQPVHLPMPTAPALRALCALLHADPGDPRTLAELGREVGASDRT 179 Query 180 LSRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGH 239 LSRLF +LGMTFPQWRTQLRL ALVLLAE VT+VA CGW++ S FID +R+A+GH Sbjct 180 LSRLFRADLGMTFPQWRTQLRLYRALVLLAEGVPVTAVAHTCGWSSASTFIDVFRRAYGH 239 Query 240 TPG 242 TPG Sbjct 240 TPG 242 >gi|337763580|emb|CCB72288.1| putative AraC-family transcriptional regulator [Streptomyces cattleya NRRL 8057] Length=248 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 124/243 (52%), Positives = 153/243 (63%), Gaps = 2/243 (0%) Query 1 MSENSHHRLATTSL-TLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWI 59 M E H A T + TL PG RI+ H H HQIVY +G ++VTT AGTW P RAIW+ Sbjct 1 MPEIRHQPHAPTRVRTLAPGERIDAHHHDDHQIVYAGSGVLAVTTDAGTWFAPGTRAIWV 60 Query 60 PAGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEH 119 PA H H+ HGH + H V L G PTVLAV+PL+REL+ A + A DT E Sbjct 61 PACTVHAHRAHGHLELHFVGLPADDNPPGLDAPTVLAVSPLLRELIRAYTAAPGDDTPER 120 Query 120 HRMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRT 179 HR+ AVL+DQL R P+ +P+P D RL CAL+ + TL + G +RT Sbjct 121 HRLRAVLRDQLRPCPQR-PMHLPAPADPRLAAVCALVHRDPAARHTLAHLARTAGTGERT 179 Query 180 LSRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGH 239 LSRLF ELGMTFPQWRTQ RL HAL +LA+ VT+VA CGWA+ SAFID +R++FG+ Sbjct 180 LSRLFRAELGMTFPQWRTQSRLYHALRMLADGAPVTTVAHRCGWASTSAFIDVFRRSFGY 239 Query 240 TPG 242 TPG Sbjct 240 TPG 242 >gi|239988374|ref|ZP_04709038.1| AraC family transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length=241 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 114/229 (50%), Positives = 150/229 (66%), Gaps = 1/229 (0%) Query 16 LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQF 75 L PG I+ HRH HQIVY G ++VTT AG+W+ P RAIW+PAG H H+ +G Sbjct 9 LAPGGSIDAHRHDDHQIVYAGRGVLTVTTDAGSWVAPGTRAIWVPAGVVHAHRAYGELDL 68 Query 76 HGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRT-DTDEHHRMLAVLQDQLPTTS 134 H V L G PTVLAV+PL+REL+IA ++A+ + E R+ AVL DQL + Sbjct 69 HLVGLPVTENPLGLDAPTVLAVSPLLRELLIAYTRAEADGEGPERRRLRAVLLDQLRASD 128 Query 135 IREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQ 194 ++PL +P+P LR CA++ + TL ++G ++G S RTLSRLF +LGMTFPQ Sbjct 129 AQQPLHLPTPATPLLRALCAILQADPGDRRTLAELGRQVGASGRTLSRLFRSDLGMTFPQ 188 Query 195 WRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQ 243 WRTQLRL HAL+LL R VT+VA CGW++ SAFI+ +R+ FGHTPG Sbjct 189 WRTQLRLHHALILLTGRTPVTAVAHRCGWSSTSAFIEVFRRTFGHTPGS 237 >gi|291445359|ref|ZP_06584749.1| AraC-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291348306|gb|EFE75210.1| AraC-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length=281 Score = 219 bits (559), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 114/229 (50%), Positives = 150/229 (66%), Gaps = 1/229 (0%) Query 16 LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQF 75 L PG I+ HRH HQIVY G ++VTT AG+W+ P RAIW+PAG H H+ +G Sbjct 49 LAPGGSIDAHRHDDHQIVYAGRGVLTVTTDAGSWVAPGTRAIWVPAGVVHAHRAYGELDL 108 Query 76 HGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRT-DTDEHHRMLAVLQDQLPTTS 134 H V L G PTVLAV+PL+REL+IA ++A+ + E R+ AVL DQL + Sbjct 109 HLVGLPVTENPLGLDAPTVLAVSPLLRELLIAYTRAEADGEGPERRRLRAVLLDQLRASD 168 Query 135 IREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQ 194 ++PL +P+P LR CA++ + TL ++G ++G S RTLSRLF +LGMTFPQ Sbjct 169 AQQPLHLPTPATPLLRALCAILQADPGDRRTLAELGRQVGASGRTLSRLFRSDLGMTFPQ 228 Query 195 WRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQ 243 WRTQLRL HAL+LL R VT+VA CGW++ SAFI+ +R+ FGHTPG Sbjct 229 WRTQLRLHHALILLTGRTPVTAVAHRCGWSSTSAFIEVFRRTFGHTPGS 277 >gi|320006912|gb|ADW01762.1| transcriptional regulator, AraC family [Streptomyces flavogriseus ATCC 33331] Length=263 Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 119/243 (49%), Positives = 151/243 (63%), Gaps = 2/243 (0%) Query 1 MSENSHHRLATTSLT-LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWI 59 M+E H +A T L GA I+ HRH HQIVY G +SVTT G+W+ P RAIW+ Sbjct 17 MTEIRHDPVAPTRTQWLASGAAIDAHRHDDHQIVYAGRGVLSVTTSEGSWVAPGTRAIWV 76 Query 60 PAGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEH 119 PAG H H+ +G H V L G PTVLAV PL+REL+IA ++ + E Sbjct 77 PAGTVHAHRAYGELDLHLVGLAATENPLGLGAPTVLAVGPLLRELIIAYTRTEDDAGPER 136 Query 120 HRMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRT 179 R+ AVL DQL S ++PL +P+P LR ++ + TL ++G +G S RT Sbjct 137 ARLRAVLLDQL-RASPQQPLHLPTPATPLLRAVYDILIADPGDSRTLSELGREVGASDRT 195 Query 180 LSRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGH 239 LSRLF +LGMTFPQWRTQLRL HAL+LL R VT+VA CGW++ SAFID +R+AFGH Sbjct 196 LSRLFRSDLGMTFPQWRTQLRLHHALILLTGRTPVTTVAHRCGWSSASAFIDAFRRAFGH 255 Query 240 TPG 242 TPG Sbjct 256 TPG 258 >gi|297156273|gb|ADI05985.1| AraC family transcription regulator [Streptomyces bingchenggensis BCW-1] Length=261 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 121/234 (52%), Positives = 156/234 (67%), Gaps = 2/234 (0%) Query 11 TTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFH 70 TT+ L PG+ + HRH HQ+VY G +SVTT AG+W+ P RAIW+P G HQH+ + Sbjct 24 TTTRFLDPGSGLSAHRHDVHQVVYAGRGVLSVTTEAGSWVVPATRAIWVPVGTLHQHRAY 83 Query 71 GHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRT-DTDEHHRMLAVLQDQ 129 G T HGV L + G P VLAV PL+REL+IA S+ D T E R+LAVL DQ Sbjct 84 GRTVLHGVGLPEEANPLGLDRPAVLAVGPLLRELIIAYSRPDADPGTAESRRLLAVLLDQ 143 Query 130 LPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELG 189 L + ++PL +P+ D RL CAL+ + P L ++G R+G S RTL+RLF E+G Sbjct 144 L-RQAPQQPLHLPTARDPRLAAVCALLQHDPADPRPLPELGARVGASARTLTRLFRAEMG 202 Query 190 MTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQ 243 MTFPQWRTQLRL HAL+LL++ VT+VA CGWA+ SAFID +R+AFG+TPG Sbjct 203 MTFPQWRTQLRLHHALLLLSDGLTVTAVAHRCGWASASAFIDVFRRAFGYTPGD 256 >gi|126348039|emb|CAJ89759.1| putative AraC-family transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length=274 Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 115/227 (51%), Positives = 143/227 (63%), Gaps = 1/227 (0%) Query 16 LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQF 75 L G RI+ HRH HQIVY +G V+VTT AGTW P RAIW+PAG H H+ HG Sbjct 32 LTAGQRIDAHRHDDHQIVYAGSGVVAVTTDAGTWFAPGTRAIWVPAGTVHAHRAHGLLDL 91 Query 76 HGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSI 135 H V L G TP VLAV+ L+REL+IA + E R+LAVL D+L S Sbjct 92 HLVGLPADDNPLGLDTPVVLAVDALLRELIIAYTLDPGDTGPERRRLLAVLCDRL-RASP 150 Query 136 REPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQW 195 ++PL +P TD RL CAL+ ++ TL +G G +RTLSRLF E GMTFPQW Sbjct 151 QQPLRLPRATDPRLAAVCALVHEDPADVRTLAGLGAATGTGERTLSRLFRREFGMTFPQW 210 Query 196 RTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPG 242 RTQ RL HAL +LA+ VT+VA CGW++ SAFID +R++FG+TPG Sbjct 211 RTQSRLYHALRMLADDLPVTTVAHRCGWSSASAFIDVFRRSFGYTPG 257 >gi|291442445|ref|ZP_06581835.1| LOW QUALITY PROTEIN: AraC-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291345340|gb|EFE72296.1| LOW QUALITY PROTEIN: AraC-family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length=249 Score = 208 bits (529), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 108/227 (48%), Positives = 142/227 (63%), Gaps = 1/227 (0%) Query 16 LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQF 75 L PG I+ HRH HQI Y S G ++VTT AG+WI P RA+WIPAG HQH+ HG Sbjct 19 LAPGGEIDAHRHDDHQIAYASRGTIAVTTDAGSWIAPATRALWIPAGTVHQHQAHGELDL 78 Query 76 HGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSI 135 H V L G P VLAV+PL+REL++A + D+ H R+ AV+ DQL Sbjct 79 HLVGLPITDNPLGLDKPAVLAVSPLLRELIVAYTCDPSNDSPSHRRLRAVMLDQLALAPE 138 Query 136 REPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQW 195 R PL +P+PTD LR ++ + +L +G +IG S RTLSR +LG+T+P+W Sbjct 139 R-PLHLPAPTDPLLRELHDILRTDPADNRSLDDLGRQIGASARTLSRRLRGDLGLTYPEW 197 Query 196 RTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPG 242 RTQ+RL HAL+LLA+ VT+VA CGW++ S FI +R+ FGHTPG Sbjct 198 RTQIRLHHALILLADDTPVTTVAHHCGWSSASTFISVFRRTFGHTPG 244 >gi|331695768|ref|YP_004332007.1| AraC family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326950457|gb|AEA24154.1| transcriptional regulator, AraC family [Pseudonocardia dioxanivorans CB1190] Length=256 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 99/224 (45%), Positives = 146/224 (66%), Gaps = 2/224 (0%) Query 19 GARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQFHGV 78 G I+RHRH HQ++Y S G +++ T G W+ +RA+W+PAG WH+H+F+G FH V Sbjct 20 GDVIDRHRHDDHQLIYLSTGVLAIRTARGDWVASSDRAVWVPAGVWHEHRFYGRASFHTV 79 Query 79 ALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSIREP 138 ++PTV+AV+ L+REL++AC++ D E R+ AVL D+L S+ +P Sbjct 80 GFPVATTPLTGSSPTVVAVDGLLRELIVACTE-DGLPAAESARIRAVLGDRLRRASV-QP 137 Query 139 LWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQWRTQ 198 L +P+ D RL AC ++ D+L P +L ++ +G +RTL+RL+ E GMT+PQWRT+ Sbjct 138 LRLPTARDPRLADACRIVEDDLRTPRSLAELARAVGAGERTLTRLYRTEFGMTYPQWRTR 197 Query 199 LRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPG 242 +R+ HA++ LAE VT A CGWAT SAF+DT+ + GHTPG Sbjct 198 VRVFHAMIRLAEGATVTETAHLCGWATTSAFVDTFARTMGHTPG 241 >gi|302539082|ref|ZP_07291424.1| AraC family transcription regulator [Streptomyces sp. C] gi|302447977|gb|EFL19793.1| AraC family transcription regulator [Streptomyces sp. C] Length=248 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 109/243 (45%), Positives = 148/243 (61%), Gaps = 2/243 (0%) Query 1 MSENSHHRLATT-SLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWI 59 M + H +A T + L G I+ HRH HQIVY G ++VTT AG+W+ P RA+WI Sbjct 2 MQKVRHESVAPTRTQRLASGGEIDAHRHDDHQIVYAGRGTIAVTTDAGSWVAPATRALWI 61 Query 60 PAGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEH 119 PAG HQH+ HG H V L G P VLAV+PL+REL++ ++ D+ H Sbjct 62 PAGTVHQHQAHGELDLHLVGLPATDNPLGLDKPAVLAVSPLLRELIVEYTRDPDDDSPPH 121 Query 120 HRMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRT 179 R+ AV+ D+L S +PL +P PTD LR ++ + +L +G +IG RT Sbjct 122 LRLRAVMLDRL-ALSPEQPLHLPVPTDPLLRELHDILRADAADNRSLDDLGRQIGAGART 180 Query 180 LSRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGH 239 LSR D+LG+T+ QWRTQ+RL HAL+LLA+ VT+VA CGW++ S FID +R+ FGH Sbjct 181 LSRRLRDDLGLTYLQWRTQIRLHHALILLADDIPVTAVAHRCGWSSASTFIDVFRRTFGH 240 Query 240 TPG 242 TPG Sbjct 241 TPG 243 >gi|345011514|ref|YP_004813868.1| transcriptional regulator with cupin sensor, AraC family [Streptomyces violaceusniger Tu 4113] gi|344037863|gb|AEM83588.1| transcriptional regulator with cupin sensor, AraC family [Streptomyces violaceusniger Tu 4113] Length=248 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/247 (51%), Positives = 156/247 (64%), Gaps = 10/247 (4%) Query 1 MSENSHHRLATTSL-TLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWI 59 M H ATT L LP G ++ HRH HQIVY G ++VTT AG+WI P NRA+WI Sbjct 1 MPRIRHTPQATTGLRPLPAGGGVDAHRHDEHQIVYAGRGVLAVTTDAGSWIAPANRALWI 60 Query 60 PAGCWHQHKFHGHTQFHGVAL----DPQRYRGGPATPTVLAVNPLMRELVIACSQADRTD 115 PAG H+H+ +G T H V L +P R P VL V PL+REL+I + Sbjct 61 PAGTVHEHRAYGATDLHMVGLAVADNPLRLE----QPAVLGVGPLLRELIIEYTARPGDA 116 Query 116 TDEHHRMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGV 175 + E R+ AVL DQL + +P+ VP+ D RL CAL+ D+ TL+Q+G +GV Sbjct 117 SAERRRLRAVLLDQLRHCA-EQPVHVPAAGDPRLAAVCALLHDDPADHRTLRQLGAAVGV 175 Query 176 SQRTLSRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQ 235 +RTL+RL + ELGMTFPQWRTQLRL HAL LLAE +T+VA CGWA+ SAFID +R+ Sbjct 176 GERTLTRLCAAELGMTFPQWRTQLRLHHALRLLAEGAPITAVAHRCGWASSSAFIDVFRR 235 Query 236 AFGHTPG 242 AFGHTPG Sbjct 236 AFGHTPG 242 >gi|294632818|ref|ZP_06711377.1| AraC family transcriptional regulator [Streptomyces sp. e14] gi|292830599|gb|EFF88949.1| AraC family transcriptional regulator [Streptomyces sp. e14] Length=269 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 109/245 (45%), Positives = 158/245 (65%), Gaps = 6/245 (2%) Query 1 MSENSHHRLATTSL-TLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWI 59 MS+ H +A TS + G I+RHRH HQ++Y SAG +++ T G+WI P +RA+WI Sbjct 17 MSDIRHEPVAPTSTQSRAGGDVIDRHRHDDHQLIYVSAGVLAIRTEHGSWIAPNDRALWI 76 Query 60 PAGCWHQHKFHGHTQFHGVALDPQRYRG--GPATPTVLAVNPLMRELVIACSQADRTDTD 117 PA WH+H+F+G ++F V P R TP V+AV+ L+REL+IA + + T+ Sbjct 77 PARTWHEHRFYGRSRFQTVGF-PAAGRAPLDTRTPAVVAVDALVRELLIALTSPALSRTE 135 Query 118 EHHRMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQ 177 H + AVL+D+L ++ +P+ +P+P DRRL AC L+ +L++P +L + + Sbjct 136 TRH-LEAVLRDRLRRVAV-QPITLPAPRDRRLADACRLVEADLSRPRSLAGLAREAHTGE 193 Query 178 RTLSRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAF 237 RTLSRLF +E GMT+PQWRT+ RL HA+V+LAE VT A CGWA+ SAF+D + +A Sbjct 194 RTLSRLFRNEFGMTYPQWRTRTRLFHAMVMLAEGASVTVTAHACGWASTSAFVDVFARAM 253 Query 238 GHTPG 242 G TPG Sbjct 254 GTTPG 258 >gi|345003474|ref|YP_004806328.1| AraC family transcriptional regulator [Streptomyces sp. SirexAA-E] gi|344319100|gb|AEN13788.1| transcriptional regulator, AraC family [Streptomyces sp. SirexAA-E] Length=262 Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 101/223 (46%), Positives = 136/223 (61%), Gaps = 1/223 (0%) Query 21 RIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQFHGVAL 80 R H+H +VYP+ G +S+ T G+WI P NR +WIPAG H+H+ HG T V + Sbjct 19 RTPEHKHTRGHLVYPATGVLSLVTSVGSWIAPSNRVVWIPAGFEHRHRAHGRTDMRIVFM 78 Query 81 DPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSIREPLW 140 P PA P VL + PL RE + + A+R R+ V+ D + TT+ +PL Sbjct 79 APSLAALLPAHPAVLVMTPLAREATLTLTGAERRPAGARSRLRRVIIDDI-TTAPEQPLH 137 Query 141 VPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQWRTQLR 200 +P P D RLR AL+ + ++ PLTL ++G +G +RTLSRLF E GM+FPQWRTQLR Sbjct 138 LPEPRDDRLRAVVALVEEGMSDPLTLGRLGHEVGAGERTLSRLFQRETGMSFPQWRTQLR 197 Query 201 LQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQ 243 + HAL+LLA+ V + A+ CGWA PSAFID + G TPGQ Sbjct 198 VHHALLLLADGGSVINTATACGWANPSAFIDAFTALVGQTPGQ 240 >gi|271964635|ref|YP_003338831.1| AraC family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270507810|gb|ACZ86088.1| transcriptional regulator, AraC-family [Streptosporangium roseum DSM 43021] Length=278 Score = 202 bits (514), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 129/264 (49%), Positives = 164/264 (63%), Gaps = 4/264 (1%) Query 1 MSENSHHRLATTSLT-LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWI 59 MSE H+ A+T L LP GA I+ H H +QIVY G +SVTT AG+WI P RAIWI Sbjct 1 MSEIRHNPRASTGLRPLPAGAGIDAHWHDENQIVYAGRGVLSVTTDAGSWIAPAIRAIWI 60 Query 60 PAGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEH 119 PAG H+H+ +G T H V L + P V++V PL+REL+I ++ T E Sbjct 61 PAGTVHEHRAYGDTDLHLVGLPVKDNPLRLDQPAVISVGPLLRELIITYTEQPADLTAER 120 Query 120 HRMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRT 179 R+ AVL D+L S ++P+ VP+ D RL CA++ DN TL ++G GVS RT Sbjct 121 RRLRAVLLDRL-RHSAQQPVHVPAARDPRLVAVCAILRDNPADNRTLARLGAVAGVSDRT 179 Query 180 LSRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGH 239 L+RL ELGM+FPQWRTQLRL +AL+LLAE VT+VA CGWA+ SAFID +R+AFGH Sbjct 180 LTRLCRAELGMSFPQWRTQLRLHYALLLLAEDTPVTAVAHRCGWASSSAFIDVFRRAFGH 239 Query 240 TPG--QAAKPMAATRLTRLRRARD 261 TPG +A P A LR D Sbjct 240 TPGTHRALSPTATAPRRALRETLD 263 >gi|21225625|ref|NP_631404.1| AraC family transcription regulator [Streptomyces coelicolor A3(2)] gi|8052364|emb|CAB92194.1| putative AraC-family transcriptional regulator [Streptomyces coelicolor A3(2)] Length=289 Score = 202 bits (514), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 116/227 (52%), Positives = 144/227 (64%), Gaps = 1/227 (0%) Query 16 LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQF 75 L G RI+ HRH HQIV+ +G V+VTT +GTW P RAIWIPAG H H+ HG Sbjct 47 LDAGQRIDAHRHDEHQIVHAGSGVVAVTTESGTWFAPGTRAIWIPAGTVHAHRAHGRLDL 106 Query 76 HGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSI 135 H V L G +P VLAV PL+REL++A + R E R+LAVL DQL S Sbjct 107 HLVGLPADANPLGLDSPAVLAVGPLLRELIVAYTLDPRDTGPERGRLLAVLCDQL-RASP 165 Query 136 REPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQW 195 ++PL +P+P D RL CAL+ + TL +G G ++RTLSRLF E GMTFPQW Sbjct 166 QQPLRLPTPRDPRLAEVCALVHADPADTRTLAALGAATGTAERTLSRLFRREFGMTFPQW 225 Query 196 RTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPG 242 RTQ RL HAL +LA+ VT+VA CGW++ SAFID +R+AFG TPG Sbjct 226 RTQSRLYHALRMLADDLPVTTVAHRCGWSSASAFIDVFRRAFGCTPG 272 >gi|297196658|ref|ZP_06914056.1| AraC-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197722733|gb|EDY66641.1| AraC-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length=250 Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 119/232 (52%), Positives = 148/232 (64%), Gaps = 1/232 (0%) Query 11 TTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFH 70 T + +L G I+ HRH HQIVY G ++VTT GTW+ P RAIWIPAG H H+ H Sbjct 12 TRTRSLATGTEIDAHRHDDHQIVYAGRGVLTVTTGTGTWVAPATRAIWIPAGTVHAHQAH 71 Query 71 GHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQL 130 G H V L G PTVLAV PL+REL++A ++ D+ E R+ AVL DQL Sbjct 72 GELDLHLVGLPATDNPLGLDEPTVLAVAPLLRELILAHTRPPFDDSPERTRLRAVLLDQL 131 Query 131 PTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGM 190 S ++PL +P+PT L+ C L+ + TL +G +G S RTLSRLF +L M Sbjct 132 -RASPQQPLHLPTPTSPLLKDLCDLLRTDPADNRTLAALGREVGASDRTLSRLFKSDLAM 190 Query 191 TFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPG 242 TFPQWRTQLRL HALVLLAE VT+VA CGW++ SAFID +R+AFGHTPG Sbjct 191 TFPQWRTQLRLHHALVLLAEDTPVTTVAHLCGWSSASAFIDVFRRAFGHTPG 242 >gi|302556632|ref|ZP_07308974.1| AraC family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302474250|gb|EFL37343.1| AraC family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length=248 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 111/227 (49%), Positives = 146/227 (65%), Gaps = 1/227 (0%) Query 16 LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQF 75 L G I+ HRH HQI Y S GA++VTT AG+W+ P RAIWIPAG H+H+ HG Sbjct 18 LASGGEIDAHRHDDHQIAYASKGAIAVTTDAGSWVAPATRAIWIPAGTVHRHQAHGELDL 77 Query 76 HGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSI 135 H V L G P VLAV+PL+REL++A + D+ H R+ AV+ DQL T S Sbjct 78 HLVGLPATDNPLGLDKPAVLAVSPLLRELIVAYTHDPDNDSPPHLRLRAVMLDQL-TISP 136 Query 136 REPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQW 195 +PL +P PTD LR ++ + +L +G +IG S RTLSR D+LG+T+PQW Sbjct 137 EQPLHLPVPTDPLLRELHDVLCGDPADNRSLDDLGRQIGASARTLSRRLRDDLGLTYPQW 196 Query 196 RTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPG 242 RTQ+RL HAL+LLA+ VT+VA CGW++ S FI+ +R+AFGHTPG Sbjct 197 RTQVRLHHALLLLADDVPVTAVAHRCGWSSASTFINVFRRAFGHTPG 243 >gi|284030535|ref|YP_003380466.1| AraC family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809828|gb|ADB31667.1| transcriptional regulator, AraC family [Kribbella flavida DSM 17836] Length=250 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 113/243 (47%), Positives = 147/243 (61%), Gaps = 5/243 (2%) Query 1 MSENSHHRLATTSLT-LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWI 59 MS + H A T L L GA I+ HRH HQI Y + G ++V T G WI P +RA+W+ Sbjct 1 MSTSRHQPSAPTVLRRLDAGAGIDAHRHDEHQIAYAARGVLAVATDQGHWIAPADRALWV 60 Query 60 PAGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEH 119 PAG HQH+ +G T H + L P V+AV+PL+REL+I + + + Sbjct 61 PAGTVHQHRAYGTTDLHLIGLTENPL--NLTAPAVIAVSPLLRELIIEFTNGVGSRA-QR 117 Query 120 HRMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRT 179 R+ AVL DQL ++PL +P +D RL C ++ + +L +G G S+RT Sbjct 118 DRLRAVLLDQLRGAD-QQPLKLPVASDPRLSAVCEVLMADPADNRSLAALGAATGASERT 176 Query 180 LSRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGH 239 LSRLF E M+FPQWRTQLRL HAL+ LAE VT+VA CGWATPSAFIDT+R+ FGH Sbjct 177 LSRLFRSEFAMSFPQWRTQLRLHHALIQLAEGDAVTTVALRCGWATPSAFIDTFRRTFGH 236 Query 240 TPG 242 TPG Sbjct 237 TPG 239 >gi|329937916|ref|ZP_08287398.1| AraC family transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329302873|gb|EGG46762.1| AraC family transcriptional regulator [Streptomyces griseoaurantiacus M045] Length=252 Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 99/225 (44%), Positives = 138/225 (62%), Gaps = 2/225 (0%) Query 18 PGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQFHG 77 PG I RHRH HQ+VY + G ++V T G W+ RA+W+PAG WH+H+ HGHT+ H Sbjct 10 PGELIARHRHEDHQLVYVARGVLAVRTDHGAWVAGARRAVWVPAGTWHEHRVHGHTEVHT 69 Query 78 VALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSIRE 137 + TPTV+AV L+REL++A ++ T E R+ AV++D+L I Sbjct 70 LHFPLGCTPLPTGTPTVIAVPALLRELLVASTEPGLTP-GESDRLRAVVEDRLCRADI-A 127 Query 138 PLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQWRT 197 PL +P D RL AC ++ D+L +PLT+ ++ +G+S+R LSRLF E G T+PQWRT Sbjct 128 PLQLPCARDPRLHEACRIVTDDLARPLTIARLAREVGLSERHLSRLFHTEFGTTYPQWRT 187 Query 198 QLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPG 242 RL A++ L E VT A CGW+TPSAF+ T+ + G TPG Sbjct 188 TARLFQAMIDLTEGATVTETAHRCGWSTPSAFVATFTRTLGQTPG 232 >gi|257070217|ref|YP_003156472.1| transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Brachybacterium faecium DSM 4810] gi|256561035|gb|ACU86882.1| transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Brachybacterium faecium DSM 4810] Length=261 Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 98/223 (44%), Positives = 128/223 (58%), Gaps = 1/223 (0%) Query 21 RIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQFHGVAL 80 R H H +VYP++G +S+ T G+WI P NRA WIPAG +HQH+ HG T V + Sbjct 22 RTPSHVHEQGHLVYPASGVLSIVTEDGSWIAPPNRAAWIPAGSFHQHRAHGATDMRIVFM 81 Query 81 DPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSIREPLW 140 PA P+VLAV PL RE +A + + R+ V+ D L T + +PL Sbjct 82 ADAAAGLLPAHPSVLAVTPLAREATLALTSDVPRTAESRERLRRVIIDDL-TAAPEQPLH 140 Query 141 VPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQWRTQLR 200 +P P D RLR L+ + P TL+Q+G RIG +RTLSRLF GM+F QWR QLR Sbjct 141 LPEPRDERLRALTHLVEQEMEDPATLEQLGRRIGAGERTLSRLFQQTTGMSFRQWRIQLR 200 Query 201 LQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQ 243 + AL+LL + V A+ CGWA PSAFID + G TPG+ Sbjct 201 IHRALLLLTDGLSVVDTATACGWANPSAFIDAFTALVGQTPGR 243 >gi|256390679|ref|YP_003112243.1| AraC family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356905|gb|ACU70402.1| transcriptional regulator, AraC family [Catenulispora acidiphila DSM 44928] Length=263 Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 103/228 (46%), Positives = 135/228 (60%), Gaps = 2/228 (0%) Query 16 LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQF 75 L PG ++ERH H +Q+VYP +G + V T AG W+ P +RA WIPA H H+ HGHT+ Sbjct 16 LLPGEQVERHDHDVNQLVYPLSGMLEVATSAGVWMVPPHRAAWIPAAVPHAHRAHGHTEM 75 Query 76 HGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSI 135 + PTVLAV+ L+RE++ A + D + + + V D+L T Sbjct 76 RTLIFAATTNPLHLDRPTVLAVDTLLREVIAALTTED-PEPRQRRTLEQVALDRLRTVD- 133 Query 136 REPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQW 195 P + P D RL +ADN TL +G G ++RTLSRLF E GMTFPQW Sbjct 134 ELPFRLLWPRDDRLATIARTLADNPADDRTLAALGRTAGAAERTLSRLFRAETGMTFPQW 193 Query 196 RTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQ 243 R QLRLQHAL LLA VT+VA+ CG+ATPSAFI+ +R+A G TPG+ Sbjct 194 RAQLRLQHALALLATGEPVTTVATACGFATPSAFIEVFRKALGTTPGR 241 >gi|158314170|ref|YP_001506678.1| AraC family transcriptional regulator [Frankia sp. EAN1pec] gi|158109575|gb|ABW11772.1| transcriptional regulator, AraC family [Frankia sp. EAN1pec] Length=263 Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 97/226 (43%), Positives = 129/226 (58%), Gaps = 2/226 (0%) Query 21 RIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQFHGVAL 80 RI+ H H HQ++YP G + V T G+W+ P RA+W+PAG H H+ HG T H +A Sbjct 36 RIDWHDHTDHQLIYPGTGVLRVVTRVGSWVVPPLRAVWLPAGVAHAHQAHGPTHMHSLAF 95 Query 81 DPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSIREPLW 140 G PTV+AV L+RE++ A + D +L+ P T +R L Sbjct 96 SDVDDPFGSPDPTVVAVPALLREIIRALTATGLAGADRRDLTAVLLRSLRPVTELR--LC 153 Query 141 VPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQWRTQLR 200 +P P D RL A +A + P TL ++G +G S+RTLSRLF + GMTFPQWR QLR Sbjct 154 LPQPRDDRLVALTAALAADPADPRTLAELGAAVGASERTLSRLFRRQTGMTFPQWRAQLR 213 Query 201 LQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQAAK 246 L H L LLA VT+VA CG++ PSAF +R AFG TP + A+ Sbjct 214 LHHGLTLLAGGEPVTTVAFACGYSNPSAFTAAFRDAFGVTPARYAR 259 >gi|333913434|ref|YP_004487166.1| AraC family transcriptional regulator [Delftia sp. Cs1-4] gi|333743634|gb|AEF88811.1| transcriptional regulator, AraC family [Delftia sp. Cs1-4] Length=313 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 100/239 (42%), Positives = 132/239 (56%), Gaps = 7/239 (2%) Query 9 LATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHK 68 L SL L G ++ HRH +VYP++G +S+ T GTWI P R W P G H H+ Sbjct 12 LEMGSLPLLHGDQVPLHRHRQGHLVYPASGVLSIVTREGTWIAPATRLAWTPGGFEHHHR 71 Query 69 FHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHH----RMLA 124 +G T L P P V A + L+RE ++A + TDT R+ A Sbjct 72 AYGCTDMRVAFLPASLAAHLPDRPAVFAASALVREAMLALTNG--TDTPRSQAARTRLQA 129 Query 125 VLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLF 184 V+ D+L S EPL + P D RLR ++ + L ++G R+G SQRTL+RLF Sbjct 130 VIVDELVPAS-EEPLHLADPRDTRLRALNRILHGDPGNNARLTELGTRVGASQRTLTRLF 188 Query 185 SDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQ 243 DELGM+F QWRTQLRL HAL LLA H VT A+ CGWA P++FI+ + A G TP + Sbjct 189 RDELGMSFRQWRTQLRLHHALTLLAAGHKVTDTAAACGWANPTSFIEAFTAALGETPAR 247 >gi|300783218|ref|YP_003763509.1| AraC family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299792732|gb|ADJ43107.1| AraC family transcriptional regulator [Amycolatopsis mediterranei U32] gi|340524599|gb|AEK39804.1| AraC family transcriptional regulator [Amycolatopsis mediterranei S699] Length=256 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 94/228 (42%), Positives = 128/228 (57%), Gaps = 1/228 (0%) Query 16 LPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQF 75 LP G + HRH Q+VY +AG + TT GTW+ P +R W P G H H+ +G T F Sbjct 21 LPHGFHLGTHRHADGQLVYAAAGGFATTTALGTWVAPADRVTWTPPGFDHSHRCYGRTDF 80 Query 76 HGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSI 135 V + A P V AV+PL+RE ++A + + H R+ AV+ D+L Sbjct 81 RLVVIPAGLCGELLAHPGVFAVSPLLREALLALTDPRESKPGAHRRLRAVVIDEL-ACPP 139 Query 136 REPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQW 195 + L +P P D RLR A L+ + TL ++G G S+RTL+RLF ELGM+F +W Sbjct 140 EQALHLPEPRDDRLRTATDLLHAEPARTTTLAELGRAAGASERTLNRLFQAELGMSFLRW 199 Query 196 RTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQ 243 RT LR+ HALV L E VT A CGW+ PS+FID + + G TPG+ Sbjct 200 RTILRIHHALVHLTEGRSVTDTAMACGWSNPSSFIDAFTEVVGRTPGR 247 >gi|312198273|ref|YP_004018334.1| AraC family transcriptional regulator [Frankia sp. EuI1c] gi|311229609|gb|ADP82464.1| transcriptional regulator, AraC family [Frankia sp. EuI1c] Length=247 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 94/235 (40%), Positives = 131/235 (56%), Gaps = 2/235 (0%) Query 12 TSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHG 71 T L L R++ H H HQ+ YP +G + VTT G+W+ P RA+W+PA H H+ +G Sbjct 10 TRLRLAAQERVDWHDHAEHQLAYPGSGVLRVTTALGSWVVPPLRAVWLPAELPHAHRAYG 69 Query 72 HTQFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLP 131 TQ H + G TPTV+AV+ L+RE++ A + + D +L+ P Sbjct 70 PTQMHSLWFGAHDDPFGARTPTVVAVSDLLREIIRALTDPAVREADRADLTRVLLRGLRP 129 Query 132 TTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMT 191 + L +P PTD RL + + P TL ++G +G +RTLSRLF E GMT Sbjct 130 VAA--PSLHLPQPTDDRLAGITEALRRDPADPRTLAELGATVGAGERTLSRLFRAETGMT 187 Query 192 FPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQAAK 246 FPQWR QLRL H + LLA VT+VA CG++TPS+F + AFG TP + A+ Sbjct 188 FPQWRAQLRLHHGMALLATGEQVTTVALTCGYSTPSSFTAAFHAAFGVTPTRYAR 242 >gi|300786530|ref|YP_003766821.1| AraC family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299796044|gb|ADJ46419.1| AraC family transcriptional regulator [Amycolatopsis mediterranei U32] gi|340528010|gb|AEK43215.1| AraC family transcriptional regulator [Amycolatopsis mediterranei S699] Length=235 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 96/227 (43%), Positives = 122/227 (54%), Gaps = 1/227 (0%) Query 17 PPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQFH 76 PPG H +VY + G +SV T GT I P NR W PAG H+H+ HGHT Sbjct 5 PPGGTSAADVHERGHLVYAARGVLSVHTERGTSIVPANRVAWTPAGFTHRHRAHGHTDMR 64 Query 77 GVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDTDEHHRMLAVLQDQLPTTSIR 136 V L R P P V + L RE+++A + D R+ VL D+L + Sbjct 65 IVFLPAALARLVPDRPAVFTASGLAREVLLALTGPREYDEAASARLRRVLVDEL-REAPE 123 Query 137 EPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQWR 196 +PL +P P D RLR + + L ++G RIG S RTLSRLF DELGMTF +WR Sbjct 124 QPLHLPEPRDDRLRAIARRLYEEPGDNTPLAELGQRIGASARTLSRLFRDELGMTFYEWR 183 Query 197 TQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQ 243 TQ+R+ HAL+LLA+ HD A CGWA PS FI + G TPG+ Sbjct 184 TQVRVGHALILLADGHDTAYTARACGWANPSHFIAAFTAVVGTTPGR 230 >gi|318061188|ref|ZP_07979909.1| transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Streptomyces sp. SA3_actG] gi|318076948|ref|ZP_07984280.1| transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Streptomyces sp. SA3_actF] Length=258 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 95/235 (41%), Positives = 128/235 (55%), Gaps = 7/235 (2%) Query 14 LTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHT 73 + L G R+ H H +VYP+ G +SVTT GTWI P R W PA H H HG Sbjct 15 IVLAHGQRLPTHAHDRGHLVYPATGVLSVTTAGGTWIAPPTRVAWTPAAFEHHHTAHGDA 74 Query 74 QFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDT-----DEHHRMLAVLQD 128 + L PA P VL V+ L RE ++A + A+ +T + R+ AV+ D Sbjct 75 DMRILFLSGALAARLPAHPAVLTVSRLAREALLALT-AEEAETGGRAPEAVDRLRAVVVD 133 Query 129 QLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDEL 188 +L T + +PL +P P D RLR ++ + TL ++G R+G S+RTLSRLF EL Sbjct 134 EL-TAAPEQPLHLPEPADDRLRALTGILYADPANQQTLAELGARVGASERTLSRLFGQEL 192 Query 189 GMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQ 243 M+F QWRTQLR+ HAL LA VT A CGWA ++FI+ + G TPG+ Sbjct 193 SMSFHQWRTQLRVHHALARLAAGKSVTDTALACGWANATSFIEAFAALVGETPGR 247 >gi|76804014|gb|ABA55957.1| AraC-type DNA-binding domain-containing protein [Vibrio sp. DAT722] Length=265 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 94/229 (42%), Positives = 133/229 (59%), Gaps = 9/229 (3%) Query 19 GARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQFHGV 78 G I+ H H +Q+VY S+G ++V T + WI P RA+WIPA H+ +G V Sbjct 36 GHVIDWHCHRHNQLVYASSGVMAVETESKLWIVPPQRAVWIPAHESHKIHMYGDAAMKNV 95 Query 79 ALDPQRYRGGPATPTVLAVNPLMRELVIACSQ--ADRTDTDEHHRMLAVLQDQL---PTT 133 L P P VL V+P++RE++I S+ + TD + R++ VL DQL P Sbjct 96 YLLPSIDTELPNQSDVLNVSPMLREMIIHLSEQPVVQASTDSYWRIVQVLLDQLKVAPQA 155 Query 134 SIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFP 193 SI+ PL P D +L C + D +L+Q I VS RTLSRLF +E+GM+F Sbjct 156 SIQVPL----PNDAKLGLVCNSLLDKPADNRSLKQWAEEINVSSRTLSRLFRNEVGMSFI 211 Query 194 QWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPG 242 ++R Q+RL H+L LLA+ H VT+VA ECG+ + SAF ++Q+FG TPG Sbjct 212 EYRQQVRLFHSLTLLAQTHPVTTVALECGFTSVSAFNHLFKQSFGVTPG 260 >gi|302518968|ref|ZP_07271310.1| AraC-family transcriptional regulator [Streptomyces sp. SPB78] gi|302427863|gb|EFK99678.1| AraC-family transcriptional regulator [Streptomyces sp. SPB78] Length=277 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 94/235 (40%), Positives = 127/235 (55%), Gaps = 7/235 (2%) Query 14 LTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHT 73 + L G R+ H H +VYP+ G +SVTT GTWI P R W PA H H HG Sbjct 34 IVLAHGQRLPTHAHDRGHLVYPATGVLSVTTAGGTWIAPPTRVAWTPAAFEHHHTAHGDA 93 Query 74 QFHGVALDPQRYRGGPATPTVLAVNPLMRELVIACSQADRTDT-----DEHHRMLAVLQD 128 + L PA P VL V+ L RE ++A + A+ +T + R+ AV+ D Sbjct 94 DMRILFLSGALAARLPAHPAVLTVSRLAREALLALT-AEEAETGGRAPEAVDRLRAVVVD 152 Query 129 QLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDEL 188 +L T + +PL +P P D RLR ++ + TL ++G R+G S+RTLSRLF EL Sbjct 153 EL-TAAPEQPLHLPEPADDRLRALTGILYADPANQQTLAELGARVGASERTLSRLFGQEL 211 Query 189 GMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQ 243 M+F QWRTQLR+ HAL LA VT A C WA ++FI+ + G TPG+ Sbjct 212 SMSFHQWRTQLRVHHALARLAAGKSVTDTALACAWANSTSFIEAFAALVGETPGR 266 >gi|331697067|ref|YP_004333306.1| AraC family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951756|gb|AEA25453.1| transcriptional regulator, AraC family [Pseudonocardia dioxanivorans CB1190] Length=247 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 96/243 (40%), Positives = 126/243 (52%), Gaps = 33/243 (13%) Query 27 HPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQFHGVALDPQRYR 86 H +VY + G ++V T GT I P NR W PAG H+H+ HG T + L P R Sbjct 4 HARGHLVYAAVGVLAVHTERGTSIVPANRIAWTPAGSAHRHRAHGDTDMRILFLSPALAR 63 Query 87 GGPATPTVLAVNPLMRELVIAC--------------------------SQADRTDTDEHH 120 P P V A + L RE+V+A S+A R Sbjct 64 LVPDRPAVFAASGLAREVVLALTGPHEAGAAGAAGAGAALDGTAPGGRSRAARA------ 117 Query 121 RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL 180 R+L VL D+L + S +PL +P P D RLR ++ + TL ++G +G RTL Sbjct 118 RLLRVLVDEL-SDSHEQPLHLPEPHDDRLRAVARILHATPSDDATLAELGRAVGAGGRTL 176 Query 181 SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT 240 SRLF ELGMTF +WRTQLR+ HALVLLAE HD+ +A CGW+ PS+FI + G T Sbjct 177 SRLFRSELGMTFYEWRTQLRVHHALVLLAEGHDINHIAHACGWSNPSSFIAAFTGVVGTT 236 Query 241 PGQ 243 PG+ Sbjct 237 PGR 239 >gi|326332775|ref|ZP_08199036.1| transcriptional regulator, AraC family [Nocardioidaceae bacterium Broad-1] gi|325949474|gb|EGD41553.1| transcriptional regulator, AraC family [Nocardioidaceae bacterium Broad-1] Length=241 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 93/232 (41%), Positives = 123/232 (54%), Gaps = 6/232 (2%) Query 17 PPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQFH 76 P G H +VY + G ++V T GT + P NR W PA H+H HG T Sbjct 3 PSGGSSSAQTHVRGHLVYAATGVLTVHTDRGTSVVPANRVAWTPARTLHRHTAHGDTDMR 62 Query 77 GVALDPQRYRGGPATPTVLAVNPLMRELVIACS-----QADRTDTDEHHRMLAVLQDQLP 131 V L P R P P V L REL++A + A D+ R+ VL D+L Sbjct 63 IVFLPPSLARRMPERPAVFLATGLARELLLALTGRHDDDAPGYDSAARARLHRVLVDELR 122 Query 132 TTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTLSRLFSDELGMT 191 + +PL +P P D RL+ ++++ +L ++G +G S RTLSRL +ELGMT Sbjct 123 EVHL-QPLHLPDPQDDRLQALARRLSEHPADNSSLTELGRSVGASSRTLSRLLRNELGMT 181 Query 192 FPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTPGQ 243 F +WRTQLR+ HALVLLAE +DVT A CGWA PS FI + G TPG+ Sbjct 182 FYEWRTQLRIYHALVLLAEGYDVTRTAHACGWAAPSGFIAAFTSILGSTPGR 233 Lambda K H 0.322 0.133 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 394810015572 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40