BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3839 Length=258 Score E Sequences producing significant alignments: (Bits) Value gi|15610975|ref|NP_218356.1| hypothetical protein Rv3839 [Mycoba... 510 9e-143 gi|167969955|ref|ZP_02552232.1| hypothetical protein MtubH3_1876... 509 2e-142 gi|31795013|ref|NP_857506.1| hypothetical protein Mb3869 [Mycoba... 508 4e-142 gi|289445440|ref|ZP_06435184.1| conserved hypothetical protein [... 506 2e-141 gi|307086638|ref|ZP_07495751.1| hypothetical protein TMLG_00332 ... 469 2e-130 gi|289764025|ref|ZP_06523403.1| conserved hypothetical protein [... 461 4e-128 gi|183985359|ref|YP_001853650.1| hypothetical protein MMAR_5391 ... 394 8e-108 gi|342860093|ref|ZP_08716745.1| hypothetical protein MCOL_14480 ... 387 6e-106 gi|118620026|ref|YP_908358.1| hypothetical protein MUL_5012 [Myc... 383 1e-104 gi|296166969|ref|ZP_06849384.1| conserved hypothetical protein [... 375 3e-102 gi|240168316|ref|ZP_04746975.1| hypothetical protein MkanA1_0332... 374 6e-102 gi|41406290|ref|NP_959126.1| hypothetical protein MAP0192c [Myco... 372 2e-101 gi|118463004|ref|YP_879481.1| hypothetical protein MAV_0187 [Myc... 370 8e-101 gi|336461876|gb|EGO40731.1| hypothetical protein MAPs_26240 [Myc... 370 1e-100 gi|254773244|ref|ZP_05214760.1| hypothetical protein MaviaA2_009... 370 1e-100 gi|118469515|ref|YP_890632.1| hypothetical protein MSMEG_6419 [M... 325 6e-87 gi|120406605|ref|YP_956434.1| hypothetical protein Mvan_5663 [My... 320 2e-85 gi|108801998|ref|YP_642195.1| hypothetical protein Mmcs_5035 [My... 317 9e-85 gi|126437979|ref|YP_001073670.1| hypothetical protein Mjls_5416 ... 317 1e-84 gi|315446528|ref|YP_004079407.1| hypothetical protein Mspyr1_504... 299 3e-79 gi|145221736|ref|YP_001132414.1| hypothetical protein Mflv_1144 ... 297 1e-78 gi|169627236|ref|YP_001700885.1| hypothetical protein MAB_0131c ... 246 2e-63 gi|226363319|ref|YP_002781101.1| hypothetical protein ROP_39090 ... 241 7e-62 gi|111021014|ref|YP_703986.1| hypothetical protein RHA1_ro04031 ... 236 3e-60 gi|333992789|ref|YP_004525403.1| hypothetical protein JDM601_414... 236 3e-60 gi|312137673|ref|YP_004005009.1| hypothetical protein REQ_01700 ... 225 6e-57 gi|325677584|ref|ZP_08157246.1| hypothetical protein HMPREF0724_... 224 9e-57 gi|229494085|ref|ZP_04387852.1| conserved hypothetical protein [... 222 3e-56 gi|226303674|ref|YP_002763632.1| hypothetical protein RER_01850 ... 222 4e-56 gi|54022095|ref|YP_116337.1| hypothetical protein nfa1310 [Nocar... 216 2e-54 gi|254822679|ref|ZP_05227680.1| hypothetical protein MintA_22309... 209 4e-52 gi|333917762|ref|YP_004491343.1| hypothetical protein AS9A_0083 ... 197 2e-48 gi|343926274|ref|ZP_08765783.1| hypothetical protein GOALK_056_0... 194 9e-48 gi|262200207|ref|YP_003271415.1| hypothetical protein Gbro_0174 ... 177 2e-42 gi|296137892|ref|YP_003645135.1| hypothetical protein Tpau_0142 ... 161 9e-38 gi|134096752|ref|YP_001102413.1| hypothetical protein SACE_0134 ... 154 2e-35 gi|326384321|ref|ZP_08206002.1| hypothetical protein SCNU_15359 ... 145 4e-33 gi|256374246|ref|YP_003097906.1| hypothetical protein Amir_0086 ... 145 7e-33 gi|302531511|ref|ZP_07283853.1| conserved hypothetical protein [... 144 1e-32 gi|300782086|ref|YP_003762377.1| hypothetical protein AMED_0151 ... 142 5e-32 gi|331694054|ref|YP_004330293.1| hypothetical protein Psed_0164 ... 129 3e-28 gi|257054185|ref|YP_003132017.1| hypothetical protein Svir_01020... 127 2e-27 gi|324998836|ref|ZP_08119948.1| hypothetical protein PseP1_08734... 123 3e-26 gi|329936444|ref|ZP_08286209.1| hypothetical protein SGM_1701 [S... 97.1 2e-18 gi|294633390|ref|ZP_06711949.1| conserved hypothetical protein [... 92.0 8e-17 gi|254383599|ref|ZP_04998949.1| conserved hypothetical protein [... 87.8 1e-15 gi|290955498|ref|YP_003486680.1| hypothetical protein SCAB_9301 ... 87.8 2e-15 gi|297204232|ref|ZP_06921629.1| conserved hypothetical protein [... 86.7 3e-15 gi|117165013|emb|CAJ88565.1| conserved hypothetical protein [Str... 86.3 4e-15 gi|297564388|ref|YP_003683361.1| hypothetical protein Ndas_5476 ... 85.1 9e-15 >gi|15610975|ref|NP_218356.1| hypothetical protein Rv3839 [Mycobacterium tuberculosis H37Rv] gi|15843463|ref|NP_338500.1| hypothetical protein MT3947 [Mycobacterium tuberculosis CDC1551] gi|148663707|ref|YP_001285230.1| hypothetical protein MRA_3879 [Mycobacterium tuberculosis H37Ra] 42 more sequence titles Length=258 Score = 510 bits (1313), Expect = 9e-143, Method: Compositional matrix adjust. Identities = 258/258 (100%), Positives = 258/258 (100%), Gaps = 0/258 (0%) Query 1 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS 60 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS Sbjct 1 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS 60 Query 61 GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETP 120 GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETP Sbjct 61 GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETP 120 Query 121 RPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATA 180 RPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATA Sbjct 121 RPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATA 180 Query 181 HDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQ 240 HDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQ Sbjct 181 HDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQ 240 Query 241 AIRVLMGCPFRNGLRARR 258 AIRVLMGCPFRNGLRARR Sbjct 241 AIRVLMGCPFRNGLRARR 258 >gi|167969955|ref|ZP_02552232.1| hypothetical protein MtubH3_18768 [Mycobacterium tuberculosis H37Ra] Length=258 Score = 509 bits (1310), Expect = 2e-142, Method: Compositional matrix adjust. Identities = 257/258 (99%), Positives = 258/258 (100%), Gaps = 0/258 (0%) Query 1 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS 60 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS Sbjct 1 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS 60 Query 61 GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETP 120 GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETP Sbjct 61 GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETP 120 Query 121 RPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATA 180 RPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWH+ATA Sbjct 121 RPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHVATA 180 Query 181 HDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQ 240 HDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQ Sbjct 181 HDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQ 240 Query 241 AIRVLMGCPFRNGLRARR 258 AIRVLMGCPFRNGLRARR Sbjct 241 AIRVLMGCPFRNGLRARR 258 >gi|31795013|ref|NP_857506.1| hypothetical protein Mb3869 [Mycobacterium bovis AF2122/97] gi|121639757|ref|YP_979981.1| hypothetical protein BCG_3902 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224992252|ref|YP_002646942.1| hypothetical protein JTY_3904 [Mycobacterium bovis BCG str. Tokyo 172] 28 more sequence titles Length=258 Score = 508 bits (1308), Expect = 4e-142, Method: Compositional matrix adjust. Identities = 257/258 (99%), Positives = 257/258 (99%), Gaps = 0/258 (0%) Query 1 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS 60 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS Sbjct 1 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS 60 Query 61 GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETP 120 GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETP Sbjct 61 GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETP 120 Query 121 RPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATA 180 R GPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATA Sbjct 121 RSGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATA 180 Query 181 HDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQ 240 HDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQ Sbjct 181 HDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQ 240 Query 241 AIRVLMGCPFRNGLRARR 258 AIRVLMGCPFRNGLRARR Sbjct 241 AIRVLMGCPFRNGLRARR 258 >gi|289445440|ref|ZP_06435184.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289418398|gb|EFD15599.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] Length=258 Score = 506 bits (1302), Expect = 2e-141, Method: Compositional matrix adjust. Identities = 256/258 (99%), Positives = 256/258 (99%), Gaps = 0/258 (0%) Query 1 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS 60 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS Sbjct 1 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS 60 Query 61 GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETP 120 GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETP Sbjct 61 GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETP 120 Query 121 RPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATA 180 R GPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATA Sbjct 121 RSGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATA 180 Query 181 HDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQ 240 HDDVVARLVSRLPAPLR GQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQ Sbjct 181 HDDVVARLVSRLPAPLRHGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQ 240 Query 241 AIRVLMGCPFRNGLRARR 258 AIRVLMGCPFRNGLRARR Sbjct 241 AIRVLMGCPFRNGLRARR 258 >gi|307086638|ref|ZP_07495751.1| hypothetical protein TMLG_00332 [Mycobacterium tuberculosis SUMu012] gi|308363981|gb|EFP52832.1| hypothetical protein TMLG_00332 [Mycobacterium tuberculosis SUMu012] Length=259 Score = 469 bits (1206), Expect = 2e-130, Method: Compositional matrix adjust. Identities = 240/246 (98%), Positives = 240/246 (98%), Gaps = 1/246 (0%) Query 14 RIRSACARAG-GALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVSGSQALLELTDYA 72 R S RAG GALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVSGSQALLELTDYA Sbjct 14 RANSQRLRAGRGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVSGSQALLELTDYA 73 Query 73 PLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETPRPGPADAAETRY 132 PLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETPRPGPADAAETRY Sbjct 74 PLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETPRPGPADAAETRY 133 Query 133 TMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATAHDDVVARLVSRL 192 TMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATAHDDVVARLVSRL Sbjct 134 TMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATAHDDVVARLVSRL 193 Query 193 PAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQAIRVLMGCPFRN 252 PAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQAIRVLMGCPFRN Sbjct 194 PAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQAIRVLMGCPFRN 253 Query 253 GLRARR 258 GLRARR Sbjct 254 GLRARR 259 >gi|289764025|ref|ZP_06523403.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289711531|gb|EFD75547.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] Length=233 Score = 461 bits (1187), Expect = 4e-128, Method: Compositional matrix adjust. Identities = 232/233 (99%), Positives = 233/233 (100%), Gaps = 0/233 (0%) Query 26 LLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVSGSQALLELTDYAPLPVREPVRSLVW 85 +LVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVSGSQALLELTDYAPLPVREPVRSLVW Sbjct 1 MLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVSGSQALLELTDYAPLPVREPVRSLVW 60 Query 86 IRGCLHQIPPAELVETLDLIATDNPNPALLQVETPRPGPADAAETRYTMQRLEIESVVVT 145 IRGCLHQIPPAELVETLDLIATDNPNPALLQVETPRPGPADAAETRYTMQRLEIESVVVT Sbjct 61 IRGCLHQIPPAELVETLDLIATDNPNPALLQVETPRPGPADAAETRYTMQRLEIESVVVT 120 Query 146 DATGAEPVTVADLLAARPDPFCEIESTLLWHLATAHDDVVARLVSRLPAPLRRGQIRPLG 205 DATGAEPVTVADLLAARPDPFCEIESTLLWHLATAHDDVVARLVSRLPAPLRRGQIRPLG Sbjct 121 DATGAEPVTVADLLAARPDPFCEIESTLLWHLATAHDDVVARLVSRLPAPLRRGQIRPLG 180 Query 206 LDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQAIRVLMGCPFRNGLRARR 258 LDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQAIRVLMGCPFRNGLRARR Sbjct 181 LDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQAIRVLMGCPFRNGLRARR 233 >gi|183985359|ref|YP_001853650.1| hypothetical protein MMAR_5391 [Mycobacterium marinum M] gi|183178685|gb|ACC43795.1| conserved hypothetical protein [Mycobacterium marinum M] Length=270 Score = 394 bits (1011), Expect = 8e-108, Method: Compositional matrix adjust. Identities = 206/265 (78%), Positives = 225/265 (85%), Gaps = 7/265 (2%) Query 1 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDR-GEV 59 M PLT+ APTTAERIRSACARAGGALL VER+ PV PIHHL+ DGSFAVAVP++ G Sbjct 6 MLPLTNPAPTTAERIRSACARAGGALLAVERDGPVATPIHHLMPDGSFAVAVPIEHPGAG 65 Query 60 SG------SQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPA 113 +G SQALLELTDYAPLPVREPVRSLVWIRG LH +P + TLDLIAT+NPNPA Sbjct 66 TGDPGQPPSQALLELTDYAPLPVREPVRSLVWIRGRLHPVPADMIGATLDLIATENPNPA 125 Query 114 LLQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTL 173 LLQV+TPR PA AE RY + RLEIESVVVTDATGAEP++V DLLAARPDPFCEIES+L Sbjct 126 LLQVQTPRSAPAHGAEIRYALLRLEIESVVVTDATGAEPISVVDLLAARPDPFCEIESSL 185 Query 174 LWHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVD 233 L HL T H DVVARLVSRLPAPLRRG++RPLGLDRYGVRFRIE+ DGDRDIRLPFH+PVD Sbjct 186 LRHLTTDHQDVVARLVSRLPAPLRRGEVRPLGLDRYGVRFRIESNDGDRDIRLPFHRPVD 245 Query 234 DMTGLSQAIRVLMGCPFRNGLRARR 258 DM GL QAIRVL+GCPF NGLRARR Sbjct 246 DMHGLRQAIRVLLGCPFGNGLRARR 270 >gi|342860093|ref|ZP_08716745.1| hypothetical protein MCOL_14480 [Mycobacterium colombiense CECT 3035] gi|342132471|gb|EGT85700.1| hypothetical protein MCOL_14480 [Mycobacterium colombiense CECT 3035] Length=264 Score = 387 bits (995), Expect = 6e-106, Method: Compositional matrix adjust. Identities = 195/260 (75%), Positives = 221/260 (85%), Gaps = 5/260 (1%) Query 3 PLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGE---- 58 PL+ APTTAERIRSAC RAGGALL +E +DPVP P+HHL+ DGS A+AVPV+R Sbjct 4 PLSCPAPTTAERIRSACVRAGGALLAIEHDDPVPTPLHHLMDDGSVALAVPVERAGGLAR 63 Query 59 -VSGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQV 117 +SGSQALLELTDYAPLP+REPVRSLVW+RG L Q+PP+E ++TLDLIA + PNPALL V Sbjct 64 PISGSQALLELTDYAPLPLREPVRSLVWVRGHLQQVPPSETLDTLDLIAAECPNPALLGV 123 Query 118 ETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHL 177 +TPR P D E RYT+ RLEI SVVVTDATGAEPV+V DLL ARPDPFC +ES+LLWHL Sbjct 124 DTPRCAPTDGEEPRYTLLRLEIASVVVTDATGAEPVSVGDLLEARPDPFCALESSLLWHL 183 Query 178 ATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTG 237 TAH DV+ARLVSRLPAPLRRG +RPLGLDRYGVRFR+E+ D D D+RLPFH+PVDDMTG Sbjct 184 DTAHSDVLARLVSRLPAPLRRGHVRPLGLDRYGVRFRVESDDRDHDVRLPFHRPVDDMTG 243 Query 238 LSQAIRVLMGCPFRNGLRAR 257 LSQAIRVLMGCPF NGLRAR Sbjct 244 LSQAIRVLMGCPFINGLRAR 263 >gi|118620026|ref|YP_908358.1| hypothetical protein MUL_5012 [Mycobacterium ulcerans Agy99] gi|118572136|gb|ABL06887.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=266 Score = 383 bits (983), Expect = 1e-104, Method: Compositional matrix adjust. Identities = 200/265 (76%), Positives = 220/265 (84%), Gaps = 7/265 (2%) Query 1 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDR-GEV 59 M PLTS APTTAERIRSACARAGGALL VER+ PV PIHHL+ DG+FAVAVP++ G Sbjct 2 MLPLTSPAPTTAERIRSACARAGGALLAVERDGPVATPIHHLMPDGTFAVAVPIEHPGAG 61 Query 60 SG------SQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPA 113 +G SQA LELTDY PLPVREPVRSLVWIRG L +P + LDLIAT+NPNPA Sbjct 62 AGDPGQPPSQAFLELTDYTPLPVREPVRSLVWIRGRLRPVPADMIGAALDLIATENPNPA 121 Query 114 LLQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTL 173 LLQV+TPR PA AE RY + RLEIESVVVTD+TGAEP++V DLLAARPDPFCEIES+L Sbjct 122 LLQVQTPRSAPAHGAEIRYALMRLEIESVVVTDSTGAEPISVVDLLAARPDPFCEIESSL 181 Query 174 LWHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVD 233 L HL T H DVVARLVSRLPAPLRRG++RPLGLDRYGVRFRIE+ DGDRDIRLPFH+PVD Sbjct 182 LRHLTTDHQDVVARLVSRLPAPLRRGEVRPLGLDRYGVRFRIESNDGDRDIRLPFHRPVD 241 Query 234 DMTGLSQAIRVLMGCPFRNGLRARR 258 DM GL QAIRVL+GCPF NGLRA R Sbjct 242 DMHGLRQAIRVLLGCPFGNGLRAGR 266 >gi|296166969|ref|ZP_06849384.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897680|gb|EFG77271.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=264 Score = 375 bits (963), Expect = 3e-102, Method: Compositional matrix adjust. Identities = 197/263 (75%), Positives = 218/263 (83%), Gaps = 6/263 (2%) Query 1 MPPLTSLAPTTAERIRSACARAGGALLVVE----REDPVPVPIHHLLYDGSFAVAVPVDR 56 M PLT APTTAERIRSAC RAGGALL +E R+DPV P+HHLL DGSFA+A+P D Sbjct 1 MLPLTCPAPTTAERIRSACVRAGGALLALETVHPRQDPVVTPVHHLLPDGSFALALPADH 60 Query 57 GE--VSGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPAL 114 V G+QA+LELTDYAPLP+REPVRSLVW RG L + PAE+ +DLIA + P+PAL Sbjct 61 DPHPVDGAQAVLELTDYAPLPLREPVRSLVWARGRLREFHPAEVAGAVDLIAAEWPHPAL 120 Query 115 LQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLL 174 LQV+TPR P+D E RYT+ RLEI SVVVTDATGAEPV+V DLLAARPDPFCEIES LL Sbjct 121 LQVDTPRCAPSDGDELRYTLFRLEIASVVVTDATGAEPVSVEDLLAARPDPFCEIESNLL 180 Query 175 WHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDD 234 WHL TAH DVVARLVSRLPAPLRRG++RPLGLDRYGVRFR+E RD D D+RLPFHKPVDD Sbjct 181 WHLDTAHSDVVARLVSRLPAPLRRGRVRPLGLDRYGVRFRVEGRDRDHDVRLPFHKPVDD 240 Query 235 MTGLSQAIRVLMGCPFRNGLRAR 257 MTGL QAIRVLMGCPF NGLRAR Sbjct 241 MTGLRQAIRVLMGCPFMNGLRAR 263 >gi|240168316|ref|ZP_04746975.1| hypothetical protein MkanA1_03327 [Mycobacterium kansasii ATCC 12478] Length=268 Score = 374 bits (961), Expect = 6e-102, Method: Compositional matrix adjust. Identities = 192/264 (73%), Positives = 212/264 (81%), Gaps = 6/264 (2%) Query 1 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDR---- 56 M P+TS PTTAERIR+ CARAG LL VE + P+ P+HHL+ DGSFAVA+P DR Sbjct 1 MFPITSPTPTTAERIRTICARAGAGLLAVEPDQPIAAPLHHLMSDGSFAVAIPADRAAGA 60 Query 57 --GEVSGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPAL 114 G GSQALLELTDYAPLPVREPVRSLVWIRG L ++P + LD IAT+NP+PAL Sbjct 61 GYGPGCGSQALLELTDYAPLPVREPVRSLVWIRGRLQRVPWGAVSSVLDTIATENPHPAL 120 Query 115 LQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLL 174 LQVETPR GPA + RY + RLE ESVVVTD TGA PV+VADLL A PDPFCEIESTLL Sbjct 121 LQVETPRSGPALRQQNRYALLRLETESVVVTDTTGASPVSVADLLTALPDPFCEIESTLL 180 Query 175 WHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDD 234 WHLAT H DVVARLVSRLPA RRG IRPLGLDRYGV+FR+E DGDRD+RLPFH+PVDD Sbjct 181 WHLATVHGDVVARLVSRLPAQWRRGPIRPLGLDRYGVQFRVEDDDGDRDVRLPFHRPVDD 240 Query 235 MTGLSQAIRVLMGCPFRNGLRARR 258 M GL+QAIRVLMGCPF NGLRARR Sbjct 241 MNGLAQAIRVLMGCPFVNGLRARR 264 >gi|41406290|ref|NP_959126.1| hypothetical protein MAP0192c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394638|gb|AAS02509.1| hypothetical protein MAP_0192c [Mycobacterium avium subsp. paratuberculosis K-10] Length=264 Score = 372 bits (956), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 194/265 (74%), Positives = 221/265 (84%), Gaps = 10/265 (3%) Query 1 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLL----YDGSFAVAVPVDR 56 M P T AP+TAERIRSAC RAGGALL +E +DPVP P+HHL+ + GSFA+A+PV R Sbjct 1 MLPQTCPAPSTAERIRSACVRAGGALLAIEHDDPVPTPVHHLIGTGPFAGSFALALPVAR 60 Query 57 GE----VSGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNP 112 V+G+ ALLELTDYAPLP+REPVRSLVW+RG LH++ PA+++ETLD+IA + PNP Sbjct 61 EHRLRPVAGAPALLELTDYAPLPLREPVRSLVWVRGRLHEVDPAQILETLDVIAAECPNP 120 Query 113 ALLQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIEST 172 ALL V+TPR AD E RY ++RLEI SVVVTDATGAEPV VADLLAARPDPFC +ES Sbjct 121 ALLGVDTPRR--ADGTEPRYVLRRLEIASVVVTDATGAEPVDVADLLAARPDPFCALESD 178 Query 173 LLWHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPV 232 LLWHL TAH DVV+RLVSRLPAPLRRGQ+RPLGLDRYGVRFR+E D D D+RLPFHKPV Sbjct 179 LLWHLDTAHGDVVSRLVSRLPAPLRRGQVRPLGLDRYGVRFRVEGNDRDHDVRLPFHKPV 238 Query 233 DDMTGLSQAIRVLMGCPFRNGLRAR 257 DDMTGLSQAIRVLMGCPF NGLRAR Sbjct 239 DDMTGLSQAIRVLMGCPFINGLRAR 263 >gi|118463004|ref|YP_879481.1| hypothetical protein MAV_0187 [Mycobacterium avium 104] gi|118164291|gb|ABK65188.1| conserved hypothetical protein [Mycobacterium avium 104] Length=264 Score = 370 bits (951), Expect = 8e-101, Method: Compositional matrix adjust. Identities = 192/265 (73%), Positives = 222/265 (84%), Gaps = 10/265 (3%) Query 1 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLL----YDGSFAVAVPVDR 56 M P T AP+TAERIRSAC RAGGALL +E +DPVP P+HHL+ + GSF++A+PV+R Sbjct 1 MLPQTCPAPSTAERIRSACVRAGGALLAIEHDDPVPTPVHHLIGAGPFAGSFSLALPVER 60 Query 57 GE----VSGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNP 112 V+G+ ALLELTDYAPLP+REPVRSLVW+RG LH++ PA+++ETLD+IA + P+P Sbjct 61 EHRLRPVAGAPALLELTDYAPLPLREPVRSLVWVRGRLHEVDPAQILETLDVIAAECPHP 120 Query 113 ALLQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIEST 172 ALL V+TPR AD E RY ++RLEI SVVVTDATGAEPV VADLLAARPDPFC +ES Sbjct 121 ALLGVDTPRR--ADGTEPRYVLRRLEIASVVVTDATGAEPVDVADLLAARPDPFCALESD 178 Query 173 LLWHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPV 232 LLWHL TAH DVV+RLVSRLPAPLRRGQ+RPLGLDRYGVRFR+E D D D+RLPFHKPV Sbjct 179 LLWHLDTAHGDVVSRLVSRLPAPLRRGQVRPLGLDRYGVRFRVEGNDRDHDVRLPFHKPV 238 Query 233 DDMTGLSQAIRVLMGCPFRNGLRAR 257 DDMTGLSQAIRVLMGCPF NGLRAR Sbjct 239 DDMTGLSQAIRVLMGCPFINGLRAR 263 >gi|336461876|gb|EGO40731.1| hypothetical protein MAPs_26240 [Mycobacterium avium subsp. paratuberculosis S397] Length=264 Score = 370 bits (950), Expect = 1e-100, Method: Compositional matrix adjust. Identities = 192/261 (74%), Positives = 219/261 (84%), Gaps = 10/261 (3%) Query 5 TSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLL----YDGSFAVAVPVDRGE-- 58 T AP+TAERIRSAC RAGGALL +E +DPVP P+HHL+ + GSFA+A+PV R Sbjct 5 TCPAPSTAERIRSACVRAGGALLAIEHDDPVPTPVHHLIGTGPFAGSFALALPVAREHRL 64 Query 59 --VSGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQ 116 V+G+ ALLELTDYAPLP+REPVRSLVW+RG LH++ PA+++ETLD+IA + PNPALL Sbjct 65 RPVAGAPALLELTDYAPLPLREPVRSLVWVRGRLHEVDPAQILETLDVIAAECPNPALLG 124 Query 117 VETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWH 176 V+TPR AD E RY ++RLEI SVVVTDATGAEPV VADLLAARPDPFC +ES LLWH Sbjct 125 VDTPRR--ADGTEPRYVLRRLEIASVVVTDATGAEPVDVADLLAARPDPFCALESDLLWH 182 Query 177 LATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMT 236 L TAH DVV+RLVSRLPAPLRRGQ+RPLGLDRYGVRFR+E D D D+RLPFHKPVDDMT Sbjct 183 LDTAHGDVVSRLVSRLPAPLRRGQVRPLGLDRYGVRFRVEGNDRDHDVRLPFHKPVDDMT 242 Query 237 GLSQAIRVLMGCPFRNGLRAR 257 GLSQAIRVLMGCPF NGLRAR Sbjct 243 GLSQAIRVLMGCPFINGLRAR 263 >gi|254773244|ref|ZP_05214760.1| hypothetical protein MaviaA2_00981 [Mycobacterium avium subsp. avium ATCC 25291] Length=264 Score = 370 bits (950), Expect = 1e-100, Method: Compositional matrix adjust. Identities = 193/265 (73%), Positives = 220/265 (84%), Gaps = 10/265 (3%) Query 1 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLL----YDGSFAVAVPVDR 56 M P T AP+TAERIRSAC RAGGALL +E +DPVP P+HHL+ + GSFA+A+PV R Sbjct 1 MLPQTCPAPSTAERIRSACVRAGGALLAIEHDDPVPTPVHHLIGAGPFAGSFALALPVAR 60 Query 57 GE----VSGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNP 112 V+G+ ALLELTDYAPLP+REPVRSLVW+RG L ++ PA+++ETLD+IA + PNP Sbjct 61 EHRLRPVAGAPALLELTDYAPLPLREPVRSLVWVRGRLREVDPAQILETLDVIAAECPNP 120 Query 113 ALLQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIEST 172 ALL V+TPR AD E RY ++RLEI SVVVTDATGAEPV VADLLAARPDPFC +ES Sbjct 121 ALLNVDTPRR--ADGTEPRYVLRRLEIASVVVTDATGAEPVDVADLLAARPDPFCALESD 178 Query 173 LLWHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPV 232 LLWHL TAH DVV+RLVSRLPAPLRRGQ+RPLGLDRYGVRFR+E D D D+RLPFHKPV Sbjct 179 LLWHLDTAHGDVVSRLVSRLPAPLRRGQVRPLGLDRYGVRFRVEGNDRDHDVRLPFHKPV 238 Query 233 DDMTGLSQAIRVLMGCPFRNGLRAR 257 DDMTGLSQAIRVLMGCPF NGLRAR Sbjct 239 DDMTGLSQAIRVLMGCPFINGLRAR 263 >gi|118469515|ref|YP_890632.1| hypothetical protein MSMEG_6419 [Mycobacterium smegmatis str. MC2 155] gi|118170802|gb|ABK71698.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=261 Score = 325 bits (832), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 165/259 (64%), Positives = 198/259 (77%), Gaps = 11/259 (4%) Query 8 APTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVP--------VDRGEV 59 APTTAERIRSACAR GGA+L VE +P+ P+HHLL DGSFA+ VP V Sbjct 5 APTTAERIRSACARGGGAMLAVEGIEPLATPVHHLLQDGSFAITVPENGPLVGTVVSSGS 64 Query 60 SGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVET 119 +G QA+LE+TDYAPLP+REPVRSLVWIRG L +P E+ + LDL+AT+NPNPALLQV + Sbjct 65 AGIQAVLEMTDYAPLPLREPVRSLVWIRGRLQHVPNGEVADLLDLVATENPNPALLQVNS 124 Query 120 PRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLAT 179 P D A+ Y + RLEIES+VV D+TGAE VTV LLAARPDPFC +ES+ L H+ + Sbjct 125 ---SPIDDADDTYALLRLEIESIVVADSTGAESVTVGALLAARPDPFCAMESSWLQHMES 181 Query 180 AHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLS 239 AH DVV RL +RLP LR+G++RPLGLDRYGV+ R+E +GD D+RLPF PVDD+ GLS Sbjct 182 AHRDVVDRLATRLPVALRQGRVRPLGLDRYGVQLRVENENGDHDVRLPFPAPVDDVPGLS 241 Query 240 QAIRVLMGCPFRNGLRARR 258 +AIRVLMGCPF NGLRARR Sbjct 242 KAIRVLMGCPFLNGLRARR 260 >gi|120406605|ref|YP_956434.1| hypothetical protein Mvan_5663 [Mycobacterium vanbaalenii PYR-1] gi|119959423|gb|ABM16428.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=266 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 167/263 (64%), Positives = 195/263 (75%), Gaps = 10/263 (3%) Query 3 PLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS-- 60 P + APTTAERIRSACAR+GGA+L VE DP P+HHLL DGSFA+ VP D V+ Sbjct 4 PAPTSAPTTAERIRSACARSGGAMLAVEGLDPTTTPVHHLLDDGSFAITVPCDGSLVATV 63 Query 61 ------GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPAL 114 G QA+LE+TDYAPLP+REPVRSLVWI+G L +P E+ LDLIA+ PNPAL Sbjct 64 VSAGNAGVQAVLEMTDYAPLPLREPVRSLVWIQGRLRDVPIGEVPALLDLIASTEPNPAL 123 Query 115 LQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLL 174 LQV + +TR + RLEIESVVV DATGAE V ++ LL ARPDPFC +ES L Sbjct 124 LQVNSGSS--QGEGDTRLALMRLEIESVVVADATGAESVALSALLGARPDPFCGMESCWL 181 Query 175 WHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDD 234 H+ +AH DVV RL +RLPA LRRG++RPLGLDRYGV+ R+E DGD D+RLPF PVDD Sbjct 182 QHMESAHRDVVDRLAARLPASLRRGRVRPLGLDRYGVQLRVEGADGDHDVRLPFAHPVDD 241 Query 235 MTGLSQAIRVLMGCPFRNGLRAR 257 +TGLSQAIRVLMGCPF NGLRAR Sbjct 242 VTGLSQAIRVLMGCPFLNGLRAR 264 >gi|108801998|ref|YP_642195.1| hypothetical protein Mmcs_5035 [Mycobacterium sp. MCS] gi|119871150|ref|YP_941102.1| hypothetical protein Mkms_5123 [Mycobacterium sp. KMS] gi|108772417|gb|ABG11139.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119697239|gb|ABL94312.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=273 Score = 317 bits (813), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 162/260 (63%), Positives = 195/260 (75%), Gaps = 15/260 (5%) Query 7 LAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVD--------RGE 58 + P+TAERIRSACAR GGA+L E DPV P+HHLL DGSFA+ VPV+ Sbjct 15 IGPSTAERIRSACARGGGAMLAAEGVDPVSTPVHHLLDDGSFAITVPVEVPLSTMVASAG 74 Query 59 VSGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVE 118 SG QA+LE+TD+APLP+REPVRSLVWI G + +P A++ LDLIA+ +PNPALLQV Sbjct 75 TSGVQAVLEMTDHAPLPLREPVRSLVWIGGRVQAVPSADVSALLDLIASADPNPALLQVN 134 Query 119 TPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLA 178 + +RY + RLEIESVVV D+TGAE V + LLAARPDPFC +ES L H+ Sbjct 135 S-------GGHSRYALMRLEIESVVVADSTGAESVGLGALLAARPDPFCAMESCWLQHME 187 Query 179 TAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGL 238 +AH DVV RL SRLPA +RRG++RPLGLDRYGV+ R+E DGD D+RLPF +PVDD+TGL Sbjct 188 SAHRDVVDRLASRLPAAMRRGRVRPLGLDRYGVQLRVEDPDGDHDVRLPFPRPVDDVTGL 247 Query 239 SQAIRVLMGCPFRNGLRARR 258 SQAIRVLMGCPF NGL+ARR Sbjct 248 SQAIRVLMGCPFLNGLQARR 267 >gi|126437979|ref|YP_001073670.1| hypothetical protein Mjls_5416 [Mycobacterium sp. JLS] gi|126237779|gb|ABO01180.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=273 Score = 317 bits (813), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 163/259 (63%), Positives = 194/259 (75%), Gaps = 15/259 (5%) Query 8 APTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVD--------RGEV 59 P+TAERIRSACAR GGA+L E DPV P+HHLL DGSFA+ VPV+ Sbjct 16 GPSTAERIRSACARGGGAMLAAEGVDPVSTPVHHLLDDGSFAITVPVEVPLSTMVASAGT 75 Query 60 SGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVET 119 SG QA+LE+TD+APLP+REPVRSLVWI G + +P A++ LDLIA+ +PNPALLQV + Sbjct 76 SGVQAVLEMTDHAPLPLREPVRSLVWIGGRVQAVPSADVSALLDLIASADPNPALLQVNS 135 Query 120 PRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLAT 179 +RY + RLEIESVVV D+TGAE V + LLAARPDPFC +ES L H+ + Sbjct 136 -------GDHSRYALMRLEIESVVVADSTGAESVGLGALLAARPDPFCAMESCWLQHMES 188 Query 180 AHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLS 239 AH DVV RL SRLPA +RRG++RPLGLDRYGV+ R+E DGD D+RLPF KPVDD+TGLS Sbjct 189 AHRDVVDRLASRLPAAMRRGRVRPLGLDRYGVQLRVEDPDGDHDVRLPFPKPVDDVTGLS 248 Query 240 QAIRVLMGCPFRNGLRARR 258 QAIRVLMGCPF NGL+ARR Sbjct 249 QAIRVLMGCPFLNGLQARR 267 >gi|315446528|ref|YP_004079407.1| hypothetical protein Mspyr1_50430 [Mycobacterium sp. Spyr1] gi|315264831|gb|ADU01573.1| hypothetical protein Mspyr1_50430 [Mycobacterium sp. Spyr1] Length=262 Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 157/253 (63%), Positives = 186/253 (74%), Gaps = 14/253 (5%) Query 13 ERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVD--------RGEVSGSQA 64 ERIRSAC R GGA++ VE DP +HHLL DGS A+ VPVD +G QA Sbjct 14 ERIRSACVRPGGAMIAVEGLDPSTTSVHHLLGDGSVAITVPVDGPLAASVVSAGNAGIQA 73 Query 65 LLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETPRPGP 124 +LE+TDYAPLP+REPVRSLVWI+G L +P AE+ LDLIA +PNPALLQV PGP Sbjct 74 VLEMTDYAPLPLREPVRSLVWIQGVLRDVPTAEVPALLDLIAAADPNPALLQVN---PGP 130 Query 125 ADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATAHDDV 184 ET + + RLEIESVVV D+TGAE V + +LL ARPDPFC +ES L H+ +AH DV Sbjct 131 E---ETPHALMRLEIESVVVADSTGAESVALGELLGARPDPFCAMESCWLQHMESAHRDV 187 Query 185 VARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQAIRV 244 V RL +RLPA LR+G++RPL LDRYGV+ R+E DGD D+RLPF KPVDD+T LS+AIRV Sbjct 188 VDRLAARLPASLRQGRVRPLALDRYGVQLRVEGADGDHDVRLPFGKPVDDVTSLSRAIRV 247 Query 245 LMGCPFRNGLRAR 257 LMGCPF NGLRAR Sbjct 248 LMGCPFLNGLRAR 260 >gi|145221736|ref|YP_001132414.1| hypothetical protein Mflv_1144 [Mycobacterium gilvum PYR-GCK] gi|145214222|gb|ABP43626.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=262 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 157/253 (63%), Positives = 186/253 (74%), Gaps = 14/253 (5%) Query 13 ERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS--------GSQA 64 ERIRSAC R GGA++ E DP +HHLL DGS A+ VPVD V+ G QA Sbjct 14 ERIRSACVRPGGAMIAAEGLDPSTTSVHHLLGDGSVAITVPVDGPLVASVASAGNAGIQA 73 Query 65 LLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETPRPGP 124 +LE+TDYAPLP+REPVRSLVWI+G L +P AE+ LDLIA +PNPALLQV PGP Sbjct 74 VLEMTDYAPLPLREPVRSLVWIQGVLRDVPTAEVPALLDLIAAADPNPALLQVN---PGP 130 Query 125 ADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATAHDDV 184 ET + + RLEIESVVV D+TGAE V + +LL ARPDPFC +ES L H+ +AH DV Sbjct 131 E---ETPHALMRLEIESVVVADSTGAESVALGELLGARPDPFCAMESCWLKHMESAHRDV 187 Query 185 VARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQAIRV 244 V RL +RLPA LR+G++RPL LDRYGV+ R+E DGD D+RLPF KPVDD+T LS+AIRV Sbjct 188 VDRLAARLPASLRQGRVRPLALDRYGVQLRVEGADGDHDVRLPFGKPVDDVTSLSRAIRV 247 Query 245 LMGCPFRNGLRAR 257 LMGCPF NGLRAR Sbjct 248 LMGCPFLNGLRAR 260 >gi|169627236|ref|YP_001700885.1| hypothetical protein MAB_0131c [Mycobacterium abscessus ATCC 19977] gi|169239203|emb|CAM60231.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=261 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 135/268 (51%), Positives = 174/268 (65%), Gaps = 21/268 (7%) Query 4 LTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRG------ 57 +T+ PTTAER+RSACARA + L V D V +HHL DG+FAVAVP D Sbjct 1 MTAAPPTTAERVRSACARAASSTLAVAGADVVGTSLHHLFDDGTFAVAVPSDSAIAATVV 60 Query 58 --EVSGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALL 115 +G ALLELTD APLP+REPVRSLVW+RG + E +D+IA+ P+PALL Sbjct 61 AAGSAGMPALLELTDQAPLPLREPVRSLVWVRGNVVAASDREARGIVDVIASRIPDPALL 120 Query 116 QVET-----PRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIE 170 + T PG + L +ESVVV D+TGAE V V+ LL+ARPDPFC +E Sbjct 121 DIRTDMRLRTEPGS--------VLLCLTVESVVVADSTGAESVDVSALLSARPDPFCALE 172 Query 171 STLLWHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHK 230 + L H+ H D+V RL RLP L+ G++R LG+DRYG++ R+E + D D+RLPF++ Sbjct 173 AGWLSHIDHDHRDLVERLARRLPLNLQHGEVRLLGIDRYGIQLRVEGAESDHDVRLPFNE 232 Query 231 PVDDMTGLSQAIRVLMGCPFRNGLRARR 258 PV+D GLSQA+R+L GCPF NGLRAR+ Sbjct 233 PVNDTAGLSQALRILAGCPFLNGLRARK 260 >gi|226363319|ref|YP_002781101.1| hypothetical protein ROP_39090 [Rhodococcus opacus B4] gi|226241808|dbj|BAH52156.1| hypothetical protein [Rhodococcus opacus B4] Length=254 Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 132/263 (51%), Positives = 170/263 (65%), Gaps = 19/263 (7%) Query 3 PLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS-- 60 P+T+ P+TAER+RS+CAR A+L VE P +HHL G VAVP D + Sbjct 2 PVTTTGPSTAERVRSSCARTQDAVLAVEGSAPTVTSVHHLRSSGDVVVAVPTDSAAATLS 61 Query 61 ------GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPAL 114 G A+LELTD +PLP+REPVRSLVW+RG LH + A D +A++ P+P L Sbjct 62 WLAGGGGIPAVLELTDNSPLPLREPVRSLVWLRGTLHALCEAHTRTLADEVASEFPHPGL 121 Query 115 LQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLL 174 L V DA T+ +L +ES VV D++GAEPV + DLLAARPDPF E+E+ L Sbjct 122 LDVGH------DA-----TLLQLHLESAVVADSSGAEPVALDDLLAARPDPFWEMETAWL 170 Query 175 WHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDD 234 HL H D++ L +LP +RRG++RPLG+DRYG+R R+E GDRDI +PF PVDD Sbjct 171 QHLDEDHRDLIDMLSRKLPPHMRRGRVRPLGIDRYGLRLRVENDHGDRDIWMPFSAPVDD 230 Query 235 MTGLSQAIRVLMGCPFRNGLRAR 257 LS+AIR+L+GCPF NGLRAR Sbjct 231 AVALSRAIRLLVGCPFVNGLRAR 253 >gi|111021014|ref|YP_703986.1| hypothetical protein RHA1_ro04031 [Rhodococcus jostii RHA1] gi|110820544|gb|ABG95828.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=254 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 129/263 (50%), Positives = 169/263 (65%), Gaps = 19/263 (7%) Query 3 PLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS-- 60 P+T+ P+TAER+RS+CAR A+L VE P +HHL G VAVP + + Sbjct 2 PVTTTGPSTAERVRSSCARTQDAVLAVEGSAPTVTSVHHLRSSGDVVVAVPTESAAATLS 61 Query 61 ------GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPAL 114 G A+LELTD +PL +REPVRSLVW+RG LH + A D +A++ P+P L Sbjct 62 WLAGGGGIPAVLELTDNSPLALREPVRSLVWLRGNLHALCEAHTRTLADEVASEYPHPGL 121 Query 115 LQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLL 174 L + DA T+ +L +ES VV D++GAEPV + DLLAARPDPF E+E+ L Sbjct 122 LDIGH------DA-----TLLQLRLESAVVADSSGAEPVALDDLLAARPDPFWEMETAWL 170 Query 175 WHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDD 234 HL H D++ L +LP +RRG++RPLG+DRYG+R R+E GDRDI +PF PVDD Sbjct 171 QHLDEDHRDLIDMLSRKLPPHMRRGRVRPLGIDRYGLRLRVENDHGDRDIWMPFSAPVDD 230 Query 235 MTGLSQAIRVLMGCPFRNGLRAR 257 LS+AIR+L+GCPF NGLRAR Sbjct 231 AVALSRAIRLLVGCPFVNGLRAR 253 >gi|333992789|ref|YP_004525403.1| hypothetical protein JDM601_4149 [Mycobacterium sp. JDM601] gi|333488757|gb|AEF38149.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=272 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 135/260 (52%), Positives = 173/260 (67%), Gaps = 12/260 (4%) Query 11 TAERIRSACARAGGALLVVEREDPVPV--PIHHLLYDGSFAVAVPVD----RGEVSGSQA 64 +AERIRSAC R L + + D PV P+ LL DGS VAVPV +G A Sbjct 12 SAERIRSACVRGQALLAIADSTDAAPVNAPVCQLLPDGSMVVAVPVGDPVAEAAGTGVAA 71 Query 65 LLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETPRPGP 124 +LELTD+APL +RE VR+L WIRG L +P +E+ LD IA NPNPALLQV +PR Sbjct 72 MLELTDHAPLRLRERVRALAWIRGRLLTVPESEIPALLDRIAAVNPNPALLQVISPRSTA 131 Query 125 ADAA-----ETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLAT 179 +A + Y + RL +S V+ DATGAE V V +LLAARPDPFC IE+ L HL + Sbjct 132 RPSAVAAPTDVSYALLRLTPDSAVLADATGAESVAVDELLAARPDPFCAIEAHWLQHLDS 191 Query 180 AHDDVVARL-VSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGL 238 AH +++ARL ++LP LRRG+ RPL +DRYG+ R+EA DGD D+RL F +PV+D+ L Sbjct 192 AHPELLARLATTKLPPQLRRGRPRPLAVDRYGMWLRVEAADGDHDVRLSFPRPVEDVLSL 251 Query 239 SQAIRVLMGCPFRNGLRARR 258 ++A+R LMGCPF NGL+ RR Sbjct 252 NRAVRALMGCPFLNGLQPRR 271 >gi|312137673|ref|YP_004005009.1| hypothetical protein REQ_01700 [Rhodococcus equi 103S] gi|311887012|emb|CBH46321.1| conserved hypothetical protein [Rhodococcus equi 103S] Length=253 Score = 225 bits (573), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 128/260 (50%), Positives = 163/260 (63%), Gaps = 19/260 (7%) Query 6 SLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS----- 60 + P+TAER+RSA ARA A+L V DPV +HHL DG+ V P D + Sbjct 4 TTGPSTAERVRSASARATDAVLAVAGTDPVVTSLHHLRGDGTVVVVAPSDAAVTALAWQY 63 Query 61 ---GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQV 117 G A+LELTDYAPL +REPVRSLVW+RG L +P + D +A ++P+PALL + Sbjct 64 GPGGLPAVLELTDYAPLALREPVRSLVWLRGNLVALPDERARQLADAVAAEHPDPALLDL 123 Query 118 ETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHL 177 G A T L +ES VV D++GAE V + LLAA PDPF ++E+ L HL Sbjct 124 -----GHGAALLT------LRLESAVVADSSGAESVAIDALLAAAPDPFQDVETVWLQHL 172 Query 178 ATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTG 237 H D+V L RLP+ LR G++RPLG+DRYGVR RIE GD D+RL F +PV D Sbjct 173 EKDHADLVEMLARRLPSTLRTGRVRPLGIDRYGVRLRIEGTSGDHDVRLDFTEPVGDAMA 232 Query 238 LSQAIRVLMGCPFRNGLRAR 257 LS+A+R+L+GCPF NGLRAR Sbjct 233 LSRALRILVGCPFVNGLRAR 252 >gi|325677584|ref|ZP_08157246.1| hypothetical protein HMPREF0724_15029 [Rhodococcus equi ATCC 33707] gi|325551611|gb|EGD21311.1| hypothetical protein HMPREF0724_15029 [Rhodococcus equi ATCC 33707] Length=253 Score = 224 bits (571), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 128/260 (50%), Positives = 163/260 (63%), Gaps = 19/260 (7%) Query 6 SLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS----- 60 + P+TAER+RSA ARA A+L V DPV +HHL DG+ V P D + Sbjct 4 TTGPSTAERVRSASARATDAVLAVAGTDPVVTSLHHLRGDGTVVVVAPSDAAVTALAWQY 63 Query 61 ---GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQV 117 G A+LELTDYAPL +REPVRSLVW+RG L +P + D +A ++P+PALL + Sbjct 64 GPGGLPAVLELTDYAPLALREPVRSLVWLRGNLVALPDERARQLADAVAAEHPDPALLDL 123 Query 118 ETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHL 177 G A T L +ES VV D++GAE V + LLAA PDPF ++E+ L HL Sbjct 124 -----GHGAALLT------LRLESAVVADSSGAESVAIDALLAAAPDPFQDVETVWLQHL 172 Query 178 ATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTG 237 H D+V L RLP+ LR G++RPLG+DRYGVR RIE GD D+RL F +PV D Sbjct 173 EEDHADLVEMLARRLPSTLRTGRVRPLGIDRYGVRLRIEGASGDHDVRLDFTEPVGDAMA 232 Query 238 LSQAIRVLMGCPFRNGLRAR 257 LS+A+R+L+GCPF NGLRAR Sbjct 233 LSRALRILVGCPFVNGLRAR 252 >gi|229494085|ref|ZP_04387852.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229319018|gb|EEN84872.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=259 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 126/264 (48%), Positives = 164/264 (63%), Gaps = 19/264 (7%) Query 1 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVD----- 55 M TS P+TAER+RSAC RA A+L +E DP +HHL +G VAVP Sbjct 1 MATKTSTGPSTAERVRSACVRAQDAVLAIEGSDPTVTSVHHLRSNGDVVVAVPHASAAAA 60 Query 56 ---RGEVSGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNP 112 G A+LE+TD+APL +REPVRSLVW+RG LH +P E D +A+++P+P Sbjct 61 LAWNSGGGGLPAVLEITDHAPLRLREPVRSLVWLRGSLHAVPDYEARVLADDVASEHPHP 120 Query 113 ALLQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIEST 172 LL + + RL + S VV D+TGAEPV V +LL A PDPF E+E+ Sbjct 121 GLLDIGHTS-----------VLLRLSLASAVVADSTGAEPVAVDELLNASPDPFWEMETA 169 Query 173 LLWHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPV 232 L HL H D+V LV +LP +R G++RPLG+DRYG+R R+E GDRD+ +PF PV Sbjct 170 WLQHLDEDHRDLVDLLVRKLPPYMRTGRVRPLGIDRYGLRLRVEDHTGDRDVWMPFANPV 229 Query 233 DDMTGLSQAIRVLMGCPFRNGLRA 256 DD LS+AIR+L+GCPF NGLR+ Sbjct 230 DDAPALSRAIRMLVGCPFLNGLRS 253 >gi|226303674|ref|YP_002763632.1| hypothetical protein RER_01850 [Rhodococcus erythropolis PR4] gi|226182789|dbj|BAH30893.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=259 Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 126/264 (48%), Positives = 164/264 (63%), Gaps = 19/264 (7%) Query 1 MPPLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVD----- 55 M TS P+TAER+RSAC RA A+L +E DP +HHL +G VAVP Sbjct 1 MATKTSTGPSTAERVRSACVRAQDAVLAIEGSDPTVTSVHHLRSNGDVVVAVPHASAAAA 60 Query 56 ---RGEVSGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNP 112 G A+LE+TD+APL +REPVRSLVW+RG LH +P E D +A+++P+P Sbjct 61 LAWNSGGGGLPAVLEITDHAPLRLREPVRSLVWLRGSLHAVPDYEARVLADDVASEHPHP 120 Query 113 ALLQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIEST 172 LL + + RL + S VV D+TGAEPV V +LL A PDPF E+E+ Sbjct 121 GLLDIGHTS-----------VLLRLSLASAVVADSTGAEPVAVDELLNASPDPFWEMETA 169 Query 173 LLWHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPV 232 L HL H D+V LV +LP +R G++RPLG+DRYG+R R+E GDRD+ +PF PV Sbjct 170 WLQHLDEDHRDLVDLLVRKLPPYMRTGRVRPLGIDRYGLRLRVEDHTGDRDVWMPFANPV 229 Query 233 DDMTGLSQAIRVLMGCPFRNGLRA 256 DD LS+AIR+L+GCPF NGLR+ Sbjct 230 DDAPALSRAIRMLVGCPFLNGLRS 253 >gi|54022095|ref|YP_116337.1| hypothetical protein nfa1310 [Nocardia farcinica IFM 10152] gi|54013603|dbj|BAD54973.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=253 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 120/259 (47%), Positives = 159/259 (62%), Gaps = 23/259 (8%) Query 7 LAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS------ 60 L P+TAER+RSACA A A+L + DP P +HHL G VAVP G V+ Sbjct 6 LVPSTAERVRSACAHAEQAVLALPGIDPTPTSVHHLRQCGDVVVAVPA--GSVAAVLTAN 63 Query 61 ----GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQ 116 G+ A+LELTD+APLP+REPVR+LVW+RG + +P + +A + P+P LL Sbjct 64 SGPGGAAAVLELTDHAPLPLREPVRALVWLRGAVRTVPQSAQRALAGEVAKEFPHPELLD 123 Query 117 VETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWH 176 V T+ RL I++ V+ DATGAE V V +L +A+PDPFC++ES L H Sbjct 124 VGH-----------GATLLRLVIDTAVMADATGAESVRVEELRSAQPDPFCQMESAWLQH 172 Query 177 LATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMT 236 L H D++ +L LP L+ G + PL +DRYG+ R+E DGD D+RLPF PVDD+ Sbjct 173 LDADHPDILEQLARHLPPRLQTGAVHPLAIDRYGLTLRVEGHDGDHDVRLPFTAPVDDVE 232 Query 237 GLSQAIRVLMGCPFRNGLR 255 LS+A+R L GCPF NGLR Sbjct 233 ALSRAVRALAGCPFLNGLR 251 >gi|254822679|ref|ZP_05227680.1| hypothetical protein MintA_22309 [Mycobacterium intracellulare ATCC 13950] Length=160 Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 109/156 (70%), Positives = 129/156 (83%), Gaps = 3/156 (1%) Query 3 PLTSLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVD--RGE-V 59 PL+ APTTAERIRSAC RAGGALL +E +DPVP P+HHL+ DGSFA+A+PV+ RG + Sbjct 4 PLSCHAPTTAERIRSACVRAGGALLAIEHDDPVPTPVHHLMDDGSFALALPVEQQRGRPI 63 Query 60 SGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVET 119 +GSQALLELTDYAPLP+REPVRSLVW+RG L Q+PPAE++ TLD+IA + P+PALL V+T Sbjct 64 AGSQALLELTDYAPLPLREPVRSLVWVRGRLQQVPPAEILSTLDVIAAECPDPALLGVDT 123 Query 120 PRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTV 155 PR P E RYT+ RLEI SVVVTDATGAEPV V Sbjct 124 PRCAPPGGQEQRYTLLRLEIASVVVTDATGAEPVAV 159 >gi|333917762|ref|YP_004491343.1| hypothetical protein AS9A_0083 [Amycolicicoccus subflavus DQS3-9A1] gi|333479983|gb|AEF38543.1| hypothetical protein AS9A_0083 [Amycolicicoccus subflavus DQS3-9A1] Length=262 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 122/262 (47%), Positives = 155/262 (60%), Gaps = 23/262 (8%) Query 8 APTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVD--------RGEV 59 P AER+RSA +RA A+L ++ DPV +HH G +AVP D + Sbjct 10 GPNAAERVRSAFSRARTAVLALDGTDPVATSVHHFDGIGGMIIAVPEDCAATALTWQACT 69 Query 60 SGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVET 119 +G A+LELTD AP+ +REPVR+LVWIRG L I P L T IA +P+ LL V Sbjct 70 AGMPAVLELTDEAPVELREPVRALVWIRGQLFPIDPDALAATAARIAATSPHVELLDVGH 129 Query 120 PRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLAT 179 T+ RLE+ S VV D TGAE V V L AA PDPFC +E+ L HL + Sbjct 130 -----------GMTLLRLEMTSTVVADHTGAEAVPVDALAAAEPDPFCYVETCWLRHLDS 178 Query 180 AHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIE----ARDGDRDIRLPFHKPVDDM 235 H D++A + +LPA R G IRPLGLDRYG+R R+E + + D+DIR+ F PV Sbjct 179 DHTDMLAMITRKLPASARAGTIRPLGLDRYGLRLRVEHSGASDNADQDIRIAFPAPVSTP 238 Query 236 TGLSQAIRVLMGCPFRNGLRAR 257 LSQA+R+LMGCPF NG+RAR Sbjct 239 DQLSQALRILMGCPFLNGMRAR 260 >gi|343926274|ref|ZP_08765783.1| hypothetical protein GOALK_056_01420 [Gordonia alkanivorans NBRC 16433] gi|343763903|dbj|GAA12709.1| hypothetical protein GOALK_056_01420 [Gordonia alkanivorans NBRC 16433] Length=237 Score = 194 bits (494), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 105/247 (43%), Positives = 153/247 (62%), Gaps = 18/247 (7%) Query 15 IRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVS------GSQALLEL 68 I++AC R G A+L +E D P+ + HL +F V VP D V+ G+ A+LE+ Sbjct 2 IQTACRRVGSAILAIEGADTTPIGVVHLFESQAF-VLVPTDGDAVAAVDGAEGTPAMLEV 60 Query 69 TDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETPRPGPADAA 128 TD+AP+ +RE VRS++W+ G LH++P + IA ++P+ LL + Sbjct 61 TDWAPIDLRERVRSVIWLNGTLHEVPRDLERDLAIEIAGEHPDDGLLDIGHG-------- 112 Query 129 ETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATAHDDVVARL 188 +M RL+++S V+ ++GA V+ A+L A PDPF E E+ L HL H D+V +L Sbjct 113 ---ASMLRLQVDSAVLASSSGATSVSAAELADATPDPFWECEAGWLEHLDADHADLVGQL 169 Query 189 VSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQAIRVLMGC 248 +LP LR+G++RPLGLDR+G+RFRIE DGD D+RLPF +PV D+ LS+A+R L GC Sbjct 170 ARKLPTDLRQGRVRPLGLDRFGIRFRIEGADGDSDVRLPFPRPVSDVFELSRALRNLAGC 229 Query 249 PFRNGLR 255 PF N +R Sbjct 230 PFMNSMR 236 >gi|262200207|ref|YP_003271415.1| hypothetical protein Gbro_0174 [Gordonia bronchialis DSM 43247] gi|262083554|gb|ACY19522.1| hypothetical protein Gbro_0174 [Gordonia bronchialis DSM 43247] Length=263 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 114/266 (43%), Positives = 158/266 (60%), Gaps = 33/266 (12%) Query 9 PTTAERIRSACARAGGALLVVEREDPVPVPIH------------HLLYDGSFAVAVPVDR 56 PT AE I++AC R A+L VE DP P HL +F V VP Sbjct 9 PTDAEMIQTACRRVSDAILAVEPTDPAVAPAEQSPVDPVTVDVVHLFESQAF-VLVPTAG 67 Query 57 GEVS-------GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDL-IATD 108 ++ G A+LE+TD AP+ +RE VRSL+W++G LHQ+P A+L L + IA + Sbjct 68 ATLAAVSAAPDGVAAMLEITDCAPIDLRERVRSLIWLKGDLHQVP-ADLERDLAIEIAAE 126 Query 109 NPNPALLQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCE 168 +P+ LL + R +M RL+I+S V+ ++GA V+ ++L A PDPF E Sbjct 127 HPDGGLLDIGHGR-----------SMLRLQIDSAVIASSSGAASVSASELAGASPDPFWE 175 Query 169 IESTLLWHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPF 228 E + HL + H DVV +L+ RLP LR+G++RPLGLDR+G+RFRIE+ +GD D+RLPF Sbjct 176 YEHGWISHLDSDHADVVGQLIRRLPRHLRKGRVRPLGLDRFGIRFRIESAEGDSDVRLPF 235 Query 229 HKPVDDMTGLSQAIRVLMGCPFRNGL 254 +PV D+ LS A+R L GCPF N L Sbjct 236 GRPVSDVYELSHALRSLAGCPFMNSL 261 >gi|296137892|ref|YP_003645135.1| hypothetical protein Tpau_0142 [Tsukamurella paurometabola DSM 20162] gi|296026026|gb|ADG76796.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=245 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 93/249 (38%), Positives = 141/249 (57%), Gaps = 15/249 (6%) Query 9 PTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVSGSQALLEL 68 PT AER+R+ A+LV + +P+ + +HH+L D +AV D + G++A++E+ Sbjct 9 PTPAERVRTVAVVPHAAVLVADGHEPITIALHHVLGD-RLVIAVADDTPWLDGARAMVEI 67 Query 69 TDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETPRPGPADAA 128 D +PL +RE RSLVW+ G L ++ A+ +A +NP +LL V Sbjct 68 NDISPLALRERTRSLVWLSGNLSEV--ADGAALAARVAIENPLESLLDVGNG-------- 117 Query 129 ETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATAHDDVVARL 188 + + +E+ V+ D GA V+ +L AA PDPF E+ L H+ H ++V +L Sbjct 118 ---SRLLTMPVETAVLADTAGASSVSGDELAAADPDPFAGYEAAWLAHVENDHPEMVGQL 174 Query 189 VSRLPAPLRRGQIRPLGLDRYGVRFRIEARD-GDRDIRLPFHKPVDDMTGLSQAIRVLMG 247 R+P LR +IR LG+DR+G+R R E + D D+RL F +P DM L + IR+L+G Sbjct 175 ARRIPGKLRNHRIRLLGIDRFGIRLRAEHHELSDVDVRLNFAQPATDMAALQRGIRILLG 234 Query 248 CPFRNGLRA 256 CPF NGLRA Sbjct 235 CPFLNGLRA 243 >gi|134096752|ref|YP_001102413.1| hypothetical protein SACE_0134 [Saccharopolyspora erythraea NRRL 2338] gi|291008438|ref|ZP_06566411.1| hypothetical protein SeryN2_28286 [Saccharopolyspora erythraea NRRL 2338] gi|133909375|emb|CAL99487.1| hypothetical protein SACE_0134 [Saccharopolyspora erythraea NRRL 2338] Length=259 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 99/255 (39%), Positives = 134/255 (53%), Gaps = 27/255 (10%) Query 9 PTTAERIRSACARAGGALLVVEREDPVPVP--IHHLLYDGS-----------FAVAVPVD 55 P+ AER R+ R G +L+ E+ + +HH+ DG+ A A Sbjct 12 PSPAERARTIARRGGKGVLMPSGENSARIAPLLHHVHPDGAATVLLADEHPLIASAWQAP 71 Query 56 RGEVSGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALL 115 RGE++ A+LE+ D P+ +REPVR L+W+ G L + P + + +A P+ LL Sbjct 72 RGELT---AMLEVADPTPVRLREPVRGLLWLTGWLRVLEPEQARAEVVRVAEQRPDSRLL 128 Query 116 QVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLW 175 DA + RLE S+V+ DA G V D LAA PDPFC +E L Sbjct 129 ----------DAGHGASVL-RLESASMVLADAEGTASVQPEDFLAASPDPFCLMEDGWLR 177 Query 176 HLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDM 235 HL +H DVV L LP LR G IRPLGLD+YG+R R+E+ DGD D+RL F + V D Sbjct 178 HLELSHRDVVGLLARHLPERLRGGHIRPLGLDKYGLRLRVESADGDHDVRLAFSRTVTDA 237 Query 236 TGLSQAIRVLMGCPF 250 L +R L+GCPF Sbjct 238 EHLGVELRRLVGCPF 252 >gi|326384321|ref|ZP_08206002.1| hypothetical protein SCNU_15359 [Gordonia neofelifaecis NRRL B-59395] gi|326196919|gb|EGD54112.1| hypothetical protein SCNU_15359 [Gordonia neofelifaecis NRRL B-59395] Length=254 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 97/254 (39%), Positives = 135/254 (54%), Gaps = 24/254 (9%) Query 5 TSLAPTTAERIRSACARAGGALLVVEREDPVPVP-------IHHLLYDGSFAV------A 51 T LAP AE I++AC RA L V D P + HL + +F + A Sbjct 3 TILAPCDAEMIQTACRRAHSGTLSVSALDAAAEPHGCDTVAMVHLFDNDAFLLVSDESPA 62 Query 52 VPVDRGEVSGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPN 111 + R + A++E+ D AP+ +RE VRSL+W+ G LH++P E IA D+P+ Sbjct 63 LQTLRRQAPDLTAMVEVIDVAPVQMRERVRSLIWLSGTLHEVPARLERELAVEIAGDHPD 122 Query 112 PALLQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIES 171 LL V R T+ RL +ES V+ +TGA V V + AA PD F E E+ Sbjct 123 EQLLDVGHGR-----------TLIRLALESAVIATSTGAGGVEVDAIAAAEPDLFWEYET 171 Query 172 TLLWHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKP 231 L HL H D++ +L RLP +R G+ RPLGLDR+G+ FR+E + D D+R+PF +P Sbjct 172 DWLVHLDCDHQDLIHQLAQRLPEHVRGGRARPLGLDRFGITFRVEIGNRDEDVRMPFARP 231 Query 232 VDDMTGLSQAIRVL 245 V + LS AI L Sbjct 232 VSRIPELSAAIHSL 245 >gi|256374246|ref|YP_003097906.1| hypothetical protein Amir_0086 [Actinosynnema mirum DSM 43827] gi|255918549|gb|ACU34060.1| hypothetical protein Amir_0086 [Actinosynnema mirum DSM 43827] Length=252 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 97/250 (39%), Positives = 128/250 (52%), Gaps = 18/250 (7%) Query 8 APTTAERIRSACARAGGALLV--VEREDPVPVPIHHLLYDGSFAVAVP-----VDRGEVS 60 AP AER R+ R G A L+ ED V +HH+ G + +P V R + Sbjct 9 APHPAERARTIATRGGRAALLPPDGAEDRVVPELHHVHACGEATLLLPDEHPLVARAALG 68 Query 61 GSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETP 120 ++LE+ D+A +P+REPVR L+WI G L + + E +A + P+P LL V Sbjct 69 EVTSMLEIADHAAVPLREPVRGLLWITGWLRALDGPDAREACVEVAEERPDPRLLDVGHG 128 Query 121 RPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATA 180 T RL S+VV DA + A PDPFC E L HL + Sbjct 129 -----------LTALRLVPASLVVADAETTTSLRPEVFAQAEPDPFCAHEDHWLRHLELS 177 Query 181 HDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQ 240 H DVV LV LP LR G +RPLGLDR+G+R R+E D D D+R+ F +PV + LS Sbjct 178 HRDVVGLLVQHLPEGLRGGHVRPLGLDRFGLRLRVELEDTDHDVRIAFSRPVATPSELSS 237 Query 241 AIRVLMGCPF 250 +R LMGCPF Sbjct 238 ELRRLMGCPF 247 >gi|302531511|ref|ZP_07283853.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302440406|gb|EFL12222.1| conserved hypothetical protein [Streptomyces sp. AA4] Length=259 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/260 (38%), Positives = 135/260 (52%), Gaps = 31/260 (11%) Query 8 APTTAERIRSACARAGGALLV---------VEREDPVPVPIHHLLYDGSFAVAVPVDRGE 58 AP AER ++ R G A ++ R +PV +HH+ + GS ++ +P + Sbjct 6 APNPAERAKTIATRGGPATIMPTVDSAGCEAARVEPV---LHHVHHSGSVSILLPDEHPM 62 Query 59 VSGSQ--------ALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNP 110 VS S+ ++EL D+AP+ +REPVR L+WI G L + IA P Sbjct 63 VSASRQAQRGELAVMVELADHAPVALREPVRGLLWITGWLRPLTDVSARARAVSIAEQRP 122 Query 111 NPALLQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIE 170 + LL V T+ RL S+V+ DA G + AA PDPF + E Sbjct 123 DHRLLDVGHG-----------LTLLRLTPASLVLADAEGTHSLRPHMFSAAPPDPFHDYE 171 Query 171 STLLWHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHK 230 + L HL + H DVV +L LPA LR G+IRPLGLDRYG+R R+E+ GD D+RL F + Sbjct 172 AEWLRHLESDHPDVVEQLARHLPADLRGGRIRPLGLDRYGLRLRVESTAGDHDVRLAFSR 231 Query 231 PVDDMTGLSQAIRVLMGCPF 250 VD L+ +R L+GCPF Sbjct 232 TVDSPPQLAAELRRLLGCPF 251 >gi|300782086|ref|YP_003762377.1| hypothetical protein AMED_0151 [Amycolatopsis mediterranei U32] gi|299791600|gb|ADJ41975.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340523444|gb|AEK38649.1| hypothetical protein RAM_00770 [Amycolatopsis mediterranei S699] Length=264 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 98/264 (38%), Positives = 135/264 (52%), Gaps = 33/264 (12%) Query 8 APTTAERIRSACARAGGALLV-------VEREDPVPVPIHHLLYDGSFAV---------- 50 AP AER ++ R G A L+ + E VPV +HH+ GS +V Sbjct 13 APNPAERAKTIATRNGPASLLPTCDRADLNGERVVPV-LHHVHRSGSVSVLLADDHPMVR 71 Query 51 -AVPVDRGEVSGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDN 109 A RGE++ ++E+ D AP+ +REP+R L+WI G L + P IA Sbjct 72 AAKQAQRGELA---VMVEVADQAPVDLREPIRGLLWITGWLRPLSPVSARARAVAIAETR 128 Query 110 PNPALLQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEI 169 P+ LL V T+ RL S+V+ DA G + AA PDPF + Sbjct 129 PDERLLDVGHG-----------VTLLRLTPASLVLADAEGTHSLRPHMFSAAPPDPFHDY 177 Query 170 ESTLLWHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFH 229 E+ L HL + H DVV +L LP+ LR G+IRPLGLDR+G+R R+E+ GD D+RL F Sbjct 178 EAGWLRHLESDHSDVVEQLAKHLPSALRGGRIRPLGLDRFGLRLRVESDTGDHDVRLAFS 237 Query 230 KPVDDMTGLSQAIRVLMGCPFRNG 253 K V+ L+ +R L+GCPF G Sbjct 238 KSVESPAQLASELRRLVGCPFLRG 261 >gi|331694054|ref|YP_004330293.1| hypothetical protein Psed_0164 [Pseudonocardia dioxanivorans CB1190] gi|326948743|gb|AEA22440.1| hypothetical protein Psed_0164 [Pseudonocardia dioxanivorans CB1190] Length=275 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 100/265 (38%), Positives = 133/265 (51%), Gaps = 32/265 (12%) Query 9 PTTAERIRSACARAGGALLV-VEREDPVPVPIHHLLYDGSFAVAVPVD------------ 55 PT AER RS R G A +V +P+ HH+L DGS AV + D Sbjct 12 PTDAERARSITTRGGRAAIVGTGGPEPIVPAFHHVLADGS-AVLLLDDHCALVEQARLDP 70 Query 56 RGEVSGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALL 115 RGEV+ +LEL D+A + +REPVR+L+WI G L AE A P+ LL Sbjct 71 RGEVA---VMLELADHAAVDLREPVRALLWITGWLRVPDDAEARRAAVHAAQARPDHRLL 127 Query 116 QVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLW 175 + T+ RLE SVV+ DA G ++ DL AARPDPFC +E L Sbjct 128 DLGHG-----------ATLVRLEPGSVVLADAEGTASLSPVDLAAARPDPFCILEDRWLG 176 Query 176 HLATAHDDVVARLVSRLPAPLRR---GQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPV 232 HL + H +V L LPAPLR ++RPLG+DR G+R R+E GD D+R+ + Sbjct 177 HLESTHPEVFVALARHLPAPLRATSGARVRPLGVDRCGIRLRVETPGGDHDVRIAWPAEA 236 Query 233 DDMTGLSQAIRVLMGCPFRNGLRAR 257 + L + L+GC + G AR Sbjct 237 TTVHELRSRLTALVGCGY-GGRHAR 260 >gi|257054185|ref|YP_003132017.1| hypothetical protein Svir_01020 [Saccharomonospora viridis DSM 43017] gi|256584057|gb|ACU95190.1| hypothetical protein Svir_01020 [Saccharomonospora viridis DSM 43017] Length=265 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/264 (35%), Positives = 128/264 (49%), Gaps = 32/264 (12%) Query 12 AERIRSACARAGGALLV------VEREDPVPVPIHHLLYDGSFAVAVPVDRGEVSGSQA- 64 AER +S R G A L+ + + PV + HL +V +P D +G Q Sbjct 15 AERAKSIAVRGGPASLLPALGHRTQSDRTTPV-LWHLHAGDDLSVVLPTDDPLAAGVQGN 73 Query 65 -------LLELTDYAPLPVREPVRSLVWIRGCLHQIPP----AELVETLDLIATDNPNPA 113 LE+ D AP+P+R+PVR L+W+ G L + A + D + P+P Sbjct 74 ATAELAVTLEIIDEAPVPLRQPVRGLLWLTGWLRGLDDRTARARALTIADSVT--EPDPR 131 Query 114 LLQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTL 173 LL + +M R SVV++D+ G ++ AA DP CE E Sbjct 132 LLDLGHG-----------LSMLRFTPASVVLSDSEGTHSLSPVTFDAAVADPLCEYEGRW 180 Query 174 LWHLATAHDDVVARLVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVD 233 L HL H DVV +L LP L G+IRPLG+DR G+R R+E D D D+RL F +PV+ Sbjct 181 LQHLEHKHTDVVEQLSRHLPEELCGGRIRPLGVDRCGIRLRVETADDDHDVRLAFSRPVE 240 Query 234 DMTGLSQAIRVLMGCPFRNGLRAR 257 + L+ +R L+GCPF N R Sbjct 241 NPPQLAVELRKLVGCPFLNRFDER 264 >gi|324998836|ref|ZP_08119948.1| hypothetical protein PseP1_08734 [Pseudonocardia sp. P1] Length=259 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 93/249 (38%), Positives = 124/249 (50%), Gaps = 22/249 (8%) Query 12 AERIRSACARAGGALLVVERE-DPVPVPIHHLLYDGSFAVAVPVD-------RGEVSGSQ 63 AER RS R G A LV E +P +HH DG+ + +P D R G Sbjct 15 AERARSLVMRGGTAALVGTGEPEPCAPLMHHTWPDGTTDLLLPDDHRVREQARLSADGLP 74 Query 64 ALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETPRPG 123 +LELT P+P+ EPVR L+W+ G LH+ P E +A P+P LL Sbjct 75 VMLELTGRTPVPLPEPVRELLWLLGRLHEPDPRTGRERALRLAEKAPHPNLLD------- 127 Query 124 PADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATAHDD 183 A T+ RL S V +DA G V+ A+L AA PDPFC++E L HL AH + Sbjct 128 ----AGRGATLLRLHPSSGVYSDAEGCASVSPAELAAADPDPFCQVEQPWLEHLDQAHPE 183 Query 184 VVARLVSRLPAPLRR--GQIRPLGLDRYGVRFRIEA-RDGDRDIRLPFHKPVDDMTGLSQ 240 ++ L LP LR G+IRP+G+DR G+R R+ A G +D+RL F L + Sbjct 184 MLCALRRHLPHGLRGVDGRIRPIGVDRCGLRVRVPAPGGGTQDVRLSFSSEATTPAELQK 243 Query 241 AIRVLMGCP 249 L+GCP Sbjct 244 RFAELVGCP 252 >gi|329936444|ref|ZP_08286209.1| hypothetical protein SGM_1701 [Streptomyces griseoaurantiacus M045] gi|329304240|gb|EGG48121.1| hypothetical protein SGM_1701 [Streptomyces griseoaurantiacus M045] Length=240 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/251 (32%), Positives = 112/251 (45%), Gaps = 48/251 (19%) Query 6 SLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVSGS--- 62 + APT AE RS A A + E + H + DG + VP D G + + Sbjct 8 TAAPTAAEHARSVTAAAWSCAVTSEGGKEEFLGAHRVEADGGILLTVPEDSGLRTAALCA 67 Query 63 -----QALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQV 117 A+LE D AP+PVR +R+ +W+ G T L Sbjct 68 PRGEPAAVLEFADVAPVPVRARIRARLWLAGWF----------------TAREEHLLF-- 109 Query 118 ETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHL 177 RP TR ++R A+GA V + + AA PDP E E+ LL HL Sbjct 110 ---RP-------TRMVLRR----------ASGAVLVDLDEYAAAAPDPLAEAEARLLTHL 149 Query 178 ATAHDDVVARLVSRLPAPLRRG--QIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDM 235 A H D V RL + RG ++RPL +DR+G+ R+E G D+RL FH+P DD+ Sbjct 150 ADCHPDAVERLSRLMEHGHLRGAVRVRPLAVDRHGLTLRVERTRGHGDVRLTFHRPADDV 209 Query 236 TGLSQAIRVLM 246 L++ I VL+ Sbjct 210 AQLTERIHVLL 220 >gi|294633390|ref|ZP_06711949.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292831171|gb|EFF89521.1| conserved hypothetical protein [Streptomyces sp. e14] Length=240 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 83/262 (32%), Positives = 114/262 (44%), Gaps = 47/262 (17%) Query 10 TTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAV--------AVPVDRGEVSG 61 T AE +RS ARA L + +D + +H + +G + A V G Sbjct 13 TAAEYVRSVLARAVSLSLSTDGQDYDLIGMHSVDAEGRVILQSQPGCPLAAQVAAAPDGG 72 Query 62 SQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETPR 121 A +E TD AP +R+ VR+ V + G ++ T R Sbjct 73 LSARMEFTDIAPTALRDRVRAQVTVSG---------------------------RLVTGR 105 Query 122 PGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATAH 181 P D R + E V + TG V VADL ARPDP E+ LL HLA AH Sbjct 106 PEHGDG-------LRFDAEQVTLRTVTGCHDVDVADLTRARPDPLAVEEAALLTHLADAH 158 Query 182 DDVVARLVSRLPAPLRRGQIR--PLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLS 239 +D+VA L + + L RG +R PL +DRYG+ R E R+G D+RL F D Sbjct 159 EDMVAALAALAGSRLPRGVVRVMPLAVDRYGIALRCEYREGHCDVRLLFPVVARDAAEAG 218 Query 240 QAIRVLM---GCPFRNGLRARR 258 + +R+L+ GC ARR Sbjct 219 ERVRLLLTASGCAHHPHPSARR 240 >gi|254383599|ref|ZP_04998949.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194342494|gb|EDX23460.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length=241 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/185 (36%), Positives = 87/185 (48%), Gaps = 11/185 (5%) Query 64 ALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQVETPRPG 123 A++E+TD AP+ V +R W+ G L ++ + L+A +P LL V Sbjct 37 AVIEITDVAPVSVPHRIRGRAWLAGWLTRVRGDDRAVCAALMAERHPVGELLGVH----- 91 Query 124 PADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATAHDD 183 Y + RLE+ + V D G + V DL AA PDP E+ +L HLA+AH D Sbjct 92 ----GGASYVLLRLEVGEISVDDLWGTDHVDPEDLAAAEPDPLVHHETEVLQHLASAHAD 147 Query 184 VVARLVSRLPAPLRRGQIR-PLGLDRYGVRFRIEARD-GDRDIRLPFHKPVDDMTGLSQA 241 VA L L + G PL LDR+G+R R D R F PV D GL QA Sbjct 148 RVADLCGLLGSREADGMAAVPLALDRFGLRVRFTGGGVSSFDARFDFPDPVADACGLRQA 207 Query 242 IRVLM 246 +R L Sbjct 208 MRRLF 212 >gi|290955498|ref|YP_003486680.1| hypothetical protein SCAB_9301 [Streptomyces scabiei 87.22] gi|260645024|emb|CBG68110.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length=241 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/214 (33%), Positives = 96/214 (45%), Gaps = 48/214 (22%) Query 37 VPIHHLLYDGSFAVAVPVDRGEVSGS--------QALLELTDYAPLPVREPVRSLVWIRG 88 V H + DG + VP D V+ + A+LE D AP+PVR +R+ +WI G Sbjct 39 VGAHGVTEDGRVTLRVPEDSTLVAAAICAPRGEPSAVLEFADVAPVPVRGRIRARLWIAG 98 Query 89 CLHQIPPAELVETLDLIATDNPNPALLQVETPRPGPADAAETRYTMQRLEIESVVVTDAT 148 TP G + TR +V+ + + Sbjct 99 WF----------------------------TPVDGDLEFRPTR----------IVLREPS 120 Query 149 GAEPVTVADLLAARPDPFCEIESTLLWHLATAHDDVVARLVSRLPAPLRRG--QIRPLGL 206 GA V + AA PDP E+ LL HLA AH D V RL +P G ++RPL + Sbjct 121 GAVLVDPDEFAAAEPDPLVTAEARLLAHLADAHPDAVERLTRLVPHDSLHGAVRVRPLAV 180 Query 207 DRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQ 240 DR+G+ R+E GD D+RL FHKP DD+ L++ Sbjct 181 DRHGLTLRVERARGDGDVRLTFHKPADDLAQLTE 214 >gi|297204232|ref|ZP_06921629.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|197714076|gb|EDY58110.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length=241 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 75/253 (30%), Positives = 107/253 (43%), Gaps = 52/253 (20%) Query 6 SLAPTTAERIRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVPVDRGEVSGS--- 62 + AP+ AE RS A + + E V H + DG + VP V+ + Sbjct 8 TAAPSAAEHARSVLAASWSCAVTAEGGREEFVGAHTVAEDGRVTLEVPEGSTLVAAAICA 67 Query 63 -----QALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIATDNPNPALLQV 117 A+LE D AP+P+R +R+ +WI G Sbjct 68 PRGEPSAVLEFADVAPVPLRSRIRARLWIAGWF--------------------------- 100 Query 118 ETPRPGPADAAETRYTMQRLEIES--VVVTDATGAEPVTVADLLAARPDPFCEIESTLLW 175 R G RLE E+ VV+ +GA V + + AA PDP E+ LL Sbjct 101 -AARDG------------RLEFEATRVVLRRPSGAVVVDLDEFAAAAPDPLATAEARLLT 147 Query 176 HLATAHDDVVARLVSRLPAPLRRGQIR--PLGLDRYGVRFRIEARDGDRDIRLPFHKPVD 233 HLA H D + RL + G +R PL +DR+G+ RIE D+RLPFH P D Sbjct 148 HLADCHPDAIERLTRLVDPDSLHGAVRVQPLAVDRHGLTLRIERARAHGDVRLPFHAPAD 207 Query 234 DMTGLSQAIRVLM 246 D+ L++ + VL+ Sbjct 208 DVARLTERMHVLL 220 >gi|117165013|emb|CAJ88565.1| conserved hypothetical protein [Streptomyces ambofaciens ATCC 23877] Length=242 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 67/201 (34%), Positives = 96/201 (48%), Gaps = 43/201 (21%) Query 48 FAVAVPVDRGEVSGSQALLELTDYAPLPVREPVRSLVWIRGCLHQIPPAELVETLDLIAT 107 A A+ RGE S A+LE D AP+PVR +R+ +W+ G A Sbjct 62 LAAAICAPRGEPS---AVLEFADVAPVPVRGRIRARLWLAG---------------WFAP 103 Query 108 DNPNPALLQVETPRPGPADAAETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFC 167 D+ + A RP TR ++R +GA V + + + ARPDP Sbjct 104 DDGHLAF------RP-------TRVVLRR----------PSGAVVVGLDEFVTARPDPLA 140 Query 168 EIESTLLWHLATAHDDVVARLVSRLPAPLRRG--QIRPLGLDRYGVRFRIEARDGDRDIR 225 E+ LL HLA H D V RL + A G ++RPL +DR+G+ R+E D+R Sbjct 141 LAEARLLTHLADCHGDAVERLTRLVHADSLHGAVRVRPLAVDRHGLTLRVERVSAHGDVR 200 Query 226 LPFHKPVDDMTGLSQAIRVLM 246 LPFH P DD+ L++ + VL+ Sbjct 201 LPFHAPADDVAQLTERVHVLL 221 >gi|297564388|ref|YP_003683361.1| hypothetical protein Ndas_5476 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848837|gb|ADH70855.1| conserved hypothetical protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length=254 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 76/246 (31%), Positives = 114/246 (47%), Gaps = 26/246 (10%) Query 15 IRSACARAGGALLVVEREDPVPVPIHHLLYDGSFAVAVP----VDRGEVSGSQALLELTD 70 + +A R G A V E P H+ DG+ ++ +P + G + E TD Sbjct 24 VAAASDRFGEAGTVYLEEAPC-----HVHADGAVSLLLPDGHPLTDPRPRGPVVMAEFTD 78 Query 71 YAPLPVREPVRSLVWIRGCLHQIPPAEL---VETLDLIATDNPNPALLQVETPRPGPADA 127 +P+ +R+ VR+++W+ G + + A L ATD+ LL++ Sbjct 79 LSPVLMRDRVRAVLWVSGAVEALEHAHARVRAARLPEAATDD---RLLEIGY-------- 127 Query 128 AETRYTMQRLEIESVVVTDATGAEPVTVADLLAARPDPFCEIESTLLWHLATAHDDVVAR 187 TM L VV +D GA + A+L AARPDPFC E+ L HL H D+V Sbjct 128 ---GLTMVVLRTTLVVQSDHDGAHVLDPAELAAARPDPFCLWEAPWLRHLDEDHPDLVGD 184 Query 188 LVSRLPAPLRRGQIRPLGLDRYGVRFRIEARDGDRDIRLPFHKPVDDMTGLSQAIRVLMG 247 L++ R G+ RPLG+DR G+R R+E G D+ LPF +P ++ + L G Sbjct 185 LLAAASGAARGGRPRPLGVDRLGLRLRVETARGHHDVHLPFTRPARTPDDVAVQVHRLAG 244 Query 248 CPFRNG 253 P G Sbjct 245 HPVPQG 250 Lambda K H 0.322 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 384134341080 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40