BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3840 Length=137 Score E Sequences producing significant alignments: (Bits) Value gi|15610976|ref|NP_218357.1| transcriptional regulatory protein ... 274 2e-72 gi|15843464|ref|NP_338501.1| hypothetical protein MT3948 [Mycoba... 238 1e-61 gi|340628809|ref|YP_004747261.1| putative transcriptional regula... 176 8e-43 gi|342860094|ref|ZP_08716746.1| transcriptional regulator [Mycob... 162 1e-38 gi|126437981|ref|YP_001073672.1| cell envelope-related transcrip... 162 2e-38 gi|108802001|ref|YP_642198.1| cell envelope-related transcriptio... 162 2e-38 gi|296164188|ref|ZP_06846787.1| transcriptional regulator [Mycob... 160 6e-38 gi|183985360|ref|YP_001853651.1| transcriptional regulatory prot... 158 2e-37 gi|120406607|ref|YP_956436.1| cell envelope-related transcriptio... 156 1e-36 gi|254822004|ref|ZP_05227005.1| transcriptional regulator [Mycob... 155 1e-36 gi|118620027|ref|YP_908359.1| transcriptional regulatory protein... 155 2e-36 gi|333992793|ref|YP_004525407.1| transcriptional regulator [Myco... 154 3e-36 gi|240168317|ref|ZP_04746976.1| transcriptional regulatory prote... 154 3e-36 gi|118472414|ref|YP_890634.1| transcriptional regulator [Mycobac... 154 4e-36 gi|315446530|ref|YP_004079409.1| cell envelope-related transcrip... 154 5e-36 gi|145221734|ref|YP_001132412.1| cell envelope-related transcrip... 154 5e-36 gi|254773243|ref|ZP_05214759.1| transcriptional regulator [Mycob... 151 3e-35 gi|336461875|gb|EGO40730.1| cell envelope-related function trans... 150 8e-35 gi|118463120|ref|YP_879480.1| transcriptional regulator [Mycobac... 149 1e-34 gi|41406289|ref|NP_959125.1| hypothetical protein MAP0191c [Myco... 149 2e-34 gi|54022093|ref|YP_116335.1| putative transcriptional regulator ... 142 1e-32 gi|226303672|ref|YP_002763630.1| LytR family regulatory protein ... 142 2e-32 gi|229492850|ref|ZP_04386648.1| transcriptional regulator [Rhodo... 142 2e-32 gi|333917758|ref|YP_004491339.1| putative LytR family regulatory... 137 8e-31 gi|296392622|ref|YP_003657506.1| cell envelope-related transcrip... 134 6e-30 gi|331694213|ref|YP_004330452.1| cell envelope-related transcrip... 133 7e-30 gi|317507462|ref|ZP_07965190.1| transcriptional regulator [Segni... 133 8e-30 gi|226363317|ref|YP_002781099.1| LytR family regulatory protein ... 133 8e-30 gi|111021012|ref|YP_703984.1| LytR family transcriptional regula... 133 1e-29 gi|302525955|ref|ZP_07278297.1| LytR family transcriptional regu... 132 2e-29 gi|169627233|ref|YP_001700882.1| transcriptional regulator [Myco... 131 3e-29 gi|300784776|ref|YP_003765067.1| LytR family transcriptional reg... 130 7e-29 gi|256375726|ref|YP_003099386.1| cell envelope-related transcrip... 130 7e-29 gi|344043898|gb|EGV39584.1| hypothetical protein CgS9114_12352 [... 129 2e-28 gi|227501870|ref|ZP_03931919.1| transcriptional regulator [Coryn... 128 3e-28 gi|262183288|ref|ZP_06042709.1| transcriptional regulator, LytR ... 128 3e-28 gi|297625940|ref|YP_003687703.1| transcriptional regulator [Prop... 127 4e-28 gi|325001740|ref|ZP_08122852.1| cell envelope-related transcript... 127 4e-28 gi|145296895|ref|YP_001139716.1| hypothetical protein cgR_2795 [... 127 5e-28 gi|23308989|ref|NP_602092.2| transcriptional regulator [Coryneba... 127 5e-28 gi|306837127|ref|ZP_07470064.1| transcriptional regulator [Coryn... 127 7e-28 gi|227834222|ref|YP_002835929.1| transcriptional regulator, LytR... 127 8e-28 gi|62391739|ref|YP_227141.1| cell envelope-related transcription... 126 1e-27 gi|225022333|ref|ZP_03711525.1| hypothetical protein CORMATOL_02... 125 2e-27 gi|260578624|ref|ZP_05846533.1| transcriptional regulator [Coryn... 125 2e-27 gi|296119128|ref|ZP_06837700.1| transcriptional regulator [Coryn... 125 2e-27 gi|300780255|ref|ZP_07090111.1| transcriptional regulator [Coryn... 125 3e-27 gi|305680444|ref|ZP_07403252.1| putative transcriptional regulat... 125 3e-27 gi|172039806|ref|YP_001799520.1| LytR family transcriptional reg... 125 3e-27 gi|227505697|ref|ZP_03935746.1| transcriptional regulator [Coryn... 125 3e-27 >gi|15610976|ref|NP_218357.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|31795014|ref|NP_857507.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|121639758|ref|YP_979982.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] 68 more sequence titles Length=137 Score = 274 bits (701), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 136/137 (99%), Positives = 137/137 (100%), Gaps = 0/137 (0%) Query 1 LAGCIQRFSHVRCLGPGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQT 60 +AGCIQRFSHVRCLGPGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQT Sbjct 1 MAGCIQRFSHVRCLGPGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQT 60 Query 61 VELATGLHLDHYAEVGFSEFADLVDAFDPLAGVDLPAGCQTLDGRAALGYVRTRATPRAD 120 VELATGLHLDHYAEVGFSEFADLVDAFDPLAGVDLPAGCQTLDGRAALGYVRTRATPRAD Sbjct 61 VELATGLHLDHYAEVGFSEFADLVDAFDPLAGVDLPAGCQTLDGRAALGYVRTRATPRAD 120 Query 121 LEGSDVPVPAAAFETQP 137 LEGSDVPVPAAAFETQP Sbjct 121 LEGSDVPVPAAAFETQP 137 >gi|15843464|ref|NP_338501.1| hypothetical protein MT3948 [Mycobacterium tuberculosis CDC1551] gi|167969956|ref|ZP_02552233.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|254233328|ref|ZP_04926654.1| hypothetical protein TBCG_03766 [Mycobacterium tuberculosis C] gi|254552956|ref|ZP_05143403.1| hypothetical protein Mtube_21359 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|13883835|gb|AAK48315.1| hypothetical protein MT3948 [Mycobacterium tuberculosis CDC1551] gi|124603121|gb|EAY61396.1| hypothetical protein TBCG_03766 [Mycobacterium tuberculosis C] gi|339296648|gb|AEJ48759.1| transcriptional regulatory protein [Mycobacterium tuberculosis CCDC5079] gi|339300245|gb|AEJ52355.1| transcriptional regulatory protein [Mycobacterium tuberculosis CCDC5180] Length=120 Score = 238 bits (608), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 119/120 (99%), Positives = 120/120 (100%), Gaps = 0/120 (0%) Query 18 LASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGF 77 +ASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGF Sbjct 1 MASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGF 60 Query 78 SEFADLVDAFDPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLEGSDVPVPAAAFETQP 137 SEFADLVDAFDPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLEGSDVPVPAAAFETQP Sbjct 61 SEFADLVDAFDPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLEGSDVPVPAAAFETQP 120 >gi|340628809|ref|YP_004747261.1| putative transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] gi|340006999|emb|CCC46190.1| putative transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] Length=114 Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 85/87 (98%), Positives = 87/87 (100%), Gaps = 0/87 (0%) Query 1 LAGCIQRFSHVRCLGPGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQT 60 +AGCIQRFSHVRCLGPGLASDNPTTLISIPRDSYVPIPGHGRDKI+AAFALGGGRLLTQT Sbjct 1 MAGCIQRFSHVRCLGPGLASDNPTTLISIPRDSYVPIPGHGRDKISAAFALGGGRLLTQT 60 Query 61 VELATGLHLDHYAEVGFSEFADLVDAF 87 VELATGLHLDHYAEVGFSEFADLVDAF Sbjct 61 VELATGLHLDHYAEVGFSEFADLVDAF 87 >gi|342860094|ref|ZP_08716746.1| transcriptional regulator [Mycobacterium colombiense CECT 3035] gi|342132472|gb|EGT85701.1| transcriptional regulator [Mycobacterium colombiense CECT 3035] Length=397 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 81/119 (69%), Positives = 94/119 (79%), Gaps = 12/119 (10%) Query 16 PGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEV 75 PG+ + PTT++SIPRDSYVPIPGHG+DKINAAFA+GG +LL QTVE ATGL LDHYAE+ Sbjct 170 PGVGAGVPTTMVSIPRDSYVPIPGHGKDKINAAFAIGGAQLLVQTVEQATGLRLDHYAEI 229 Query 76 GFSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 GF FA LVDA DPLAG++LPAGCQTL+GR ALGYVR+R TPRADL+ Sbjct 230 GFGGFAALVDALGGVTVCPKTAFNDPLAGIELPAGCQTLNGRNALGYVRSRDTPRADLD 288 >gi|126437981|ref|YP_001073672.1| cell envelope-related transcriptional attenuator [Mycobacterium sp. JLS] gi|126237781|gb|ABO01182.1| cell envelope-related transcriptional attenuator [Mycobacterium sp. JLS] Length=311 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 83/119 (70%), Positives = 91/119 (77%), Gaps = 12/119 (10%) Query 16 PGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEV 75 PGL S P T++SIPRDSYVPIPG+G DKINAAFALGG LL QTVE ATG+ LDHYAEV Sbjct 82 PGLTSSAPATMVSIPRDSYVPIPGYGEDKINAAFALGGAPLLAQTVEQATGMRLDHYAEV 141 Query 76 GFSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 GF FA +VDA DPLAG+DLPAGCQ LDGR ALG+VRTRATPRADL+ Sbjct 142 GFDGFASVVDAVGGVTMCPAEPINDPLAGIDLPAGCQELDGRNALGFVRTRATPRADLD 200 >gi|108802001|ref|YP_642198.1| cell envelope-related transcriptional attenuator [Mycobacterium sp. MCS] gi|119871153|ref|YP_941105.1| cell envelope-related transcriptional attenuator [Mycobacterium sp. KMS] gi|108772420|gb|ABG11142.1| cell envelope-related transcriptional attenuator [Mycobacterium sp. MCS] gi|119697242|gb|ABL94315.1| cell envelope-related transcriptional attenuator [Mycobacterium sp. KMS] Length=311 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 83/119 (70%), Positives = 91/119 (77%), Gaps = 12/119 (10%) Query 16 PGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEV 75 PGL S P T++SIPRDSYVPIPG+G DKINAAFALGG LL QTVE ATG+ LDHYAEV Sbjct 82 PGLTSSAPATMVSIPRDSYVPIPGYGEDKINAAFALGGAPLLAQTVEQATGMRLDHYAEV 141 Query 76 GFSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 GF FA +VDA DPLAG+DLPAGCQ LDGR ALG+VRTRATPRADL+ Sbjct 142 GFDGFASVVDAVGGVTMCPAEPINDPLAGIDLPAGCQELDGRNALGFVRTRATPRADLD 200 >gi|296164188|ref|ZP_06846787.1| transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900458|gb|EFG79865.1| transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=325 Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 82/119 (69%), Positives = 90/119 (76%), Gaps = 12/119 (10%) Query 16 PGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEV 75 P L S T++S+PRDSYVPIPGHGRDKINAAFA+GG LL QTVELATGL LDHYAE+ Sbjct 102 PELGSGGRVTMVSLPRDSYVPIPGHGRDKINAAFAMGGATLLAQTVELATGLRLDHYAEI 161 Query 76 GFSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 GF FA +VDA DPLAG+DLPAGCQ LDGR ALGYVRTR TPRADL+ Sbjct 162 GFGGFAGVVDALGGVTVCPTAPLDDPLAGIDLPAGCQKLDGRNALGYVRTRDTPRADLD 220 >gi|183985360|ref|YP_001853651.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183178686|gb|ACC43796.1| transcriptional regulatory protein [Mycobacterium marinum M] Length=409 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 80/118 (68%), Positives = 91/118 (78%), Gaps = 12/118 (10%) Query 17 GLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVG 76 GL S PT L+SIPRDSYVP+PG+GRDKINAAFA+GG LL QTVE ATGL +DHYAE+G Sbjct 183 GLGSSTPTALVSIPRDSYVPVPGYGRDKINAAFAIGGAPLLVQTVEQATGLRIDHYAEIG 242 Query 77 FSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 F FA+LVDA DPLAG+DL GCQ LDGR+ALGYVR+RATPRADL+ Sbjct 243 FGGFAELVDALGGVRMCLTEPIGDPLAGIDLAPGCQQLDGRSALGYVRSRATPRADLD 300 >gi|120406607|ref|YP_956436.1| cell envelope-related transcriptional attenuator [Mycobacterium vanbaalenii PYR-1] gi|119959425|gb|ABM16430.1| cell envelope-related transcriptional attenuator [Mycobacterium vanbaalenii PYR-1] Length=306 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/119 (67%), Positives = 91/119 (77%), Gaps = 12/119 (10%) Query 16 PGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEV 75 PGL S P T++SIPRDSYV IP +G DKINAAF++GG RLL +TVELATGL +DHYAE+ Sbjct 78 PGLGSATPATMVSIPRDSYVSIPEYGSDKINAAFSVGGPRLLARTVELATGLRIDHYAEI 137 Query 76 GFSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 GF FA+LVDA DPLAG+DLPAGCQ LDGR ALGYVR+RAT RADL+ Sbjct 138 GFGGFAELVDAVGGVTMCPEAPISDPLAGIDLPAGCQRLDGRTALGYVRSRATARADLD 196 >gi|254822004|ref|ZP_05227005.1| transcriptional regulator [Mycobacterium intracellulare ATCC 13950] Length=341 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 78/119 (66%), Positives = 90/119 (76%), Gaps = 12/119 (10%) Query 16 PGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEV 75 PG+ S PT L+SIPRDS VPIP HG+DK+NAAF++GG RLL +T+E ATGL +DHYAE+ Sbjct 114 PGVGSSVPTALVSIPRDSLVPIPDHGKDKVNAAFSMGGARLLVRTLEQATGLRIDHYAEI 173 Query 76 GFSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 GF FA LVDA DPLAG+DLPAGCQ LDGR ALGYVRTR TPRADL+ Sbjct 174 GFGGFAALVDALGGVTVCPATPIDDPLAGIDLPAGCQRLDGRQALGYVRTRDTPRADLD 232 >gi|118620027|ref|YP_908359.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118572137|gb|ABL06888.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length=409 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 79/118 (67%), Positives = 90/118 (77%), Gaps = 12/118 (10%) Query 17 GLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVG 76 GL S PT L+SIPRDSYVP+ G+GRDKINAAFA+GG LL QTVE ATGL +DHYAE+G Sbjct 183 GLGSSTPTALVSIPRDSYVPVRGYGRDKINAAFAIGGAPLLVQTVEQATGLRIDHYAEIG 242 Query 77 FSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 F FA+LVDA DPLAG+DL GCQ LDGR+ALGYVR+RATPRADL+ Sbjct 243 FGGFAELVDALGGVRMCLTEPIGDPLAGIDLAPGCQQLDGRSALGYVRSRATPRADLD 300 >gi|333992793|ref|YP_004525407.1| transcriptional regulator [Mycobacterium sp. JDM601] gi|333488761|gb|AEF38153.1| transcriptional regulatory protein [Mycobacterium sp. JDM601] Length=309 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 81/122 (67%), Positives = 91/122 (75%), Gaps = 12/122 (9%) Query 16 PGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEV 75 P S PTT++SIPRDSYVPIPG+G DKINAAFALGG LLT+TVE ATGL LDHY E+ Sbjct 85 PATGSGTPTTVVSIPRDSYVPIPGYGYDKINAAFALGGAPLLTRTVEQATGLRLDHYVEI 144 Query 76 GFSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLEG 123 GF FA LVDA DPLAG++LPAGCQ L G+AALGYVR+RATPRADL+ Sbjct 145 GFGGFATLVDALGGVVLCPDEPIEDPLAGLNLPAGCQKLAGQAALGYVRSRATPRADLDR 204 Query 124 SD 125 D Sbjct 205 MD 206 >gi|240168317|ref|ZP_04746976.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length=314 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 82/119 (69%), Positives = 87/119 (74%), Gaps = 12/119 (10%) Query 16 PGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEV 75 P S PTTL+SIPRDS VPIPGHGRDKINAAF GG LL TVE ATGL +DHYAEV Sbjct 87 PEFGSSIPTTLVSIPRDSSVPIPGHGRDKINAAFVTGGAPLLVLTVEQATGLRVDHYAEV 146 Query 76 GFSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 GF F +LVDA DPLAGVDLPAGCQ LDGR ALGYVR+RATPRADL+ Sbjct 147 GFGGFVELVDALGGVSVCLSDPIRDPLAGVDLPAGCQHLDGRRALGYVRSRATPRADLD 205 >gi|118472414|ref|YP_890634.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118173701|gb|ABK74597.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length=623 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 81/119 (69%), Positives = 88/119 (74%), Gaps = 12/119 (10%) Query 16 PGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEV 75 P L S P T++SIPRDSYV IPG+G DKINAAFALGG LL QTVE ATGL LDHYAE+ Sbjct 395 PALGSSTPATMVSIPRDSYVEIPGYGEDKINAAFALGGAPLLAQTVESATGLRLDHYAEI 454 Query 76 GFSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 GF FA LVDA DPLAG+DLPAGCQ LDGR ALG+VRTRAT RADL+ Sbjct 455 GFGGFASLVDAVGGVTVCPAEPISDPLAGIDLPAGCQELDGRTALGFVRTRATARADLD 513 >gi|315446530|ref|YP_004079409.1| cell envelope-related transcriptional attenuator [Mycobacterium sp. Spyr1] gi|315264833|gb|ADU01575.1| cell envelope-related transcriptional attenuator [Mycobacterium sp. Spyr1] Length=404 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 79/119 (67%), Positives = 89/119 (75%), Gaps = 12/119 (10%) Query 16 PGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEV 75 PG+ S P T++SIPRDSYVPIP +G DKINAAF+LGG LL QTVE ATGL +DHYAEV Sbjct 176 PGIGSSTPATMVSIPRDSYVPIPEYGSDKINAAFSLGGPPLLAQTVEQATGLRIDHYAEV 235 Query 76 GFSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 GF FA +VDA DPLAG+DLPAGCQ LDGR ALGYVR+RAT RADL+ Sbjct 236 GFGGFAGMVDAVGGVTVCPAEPINDPLAGIDLPAGCQELDGRNALGYVRSRATARADLD 294 >gi|145221734|ref|YP_001132412.1| cell envelope-related transcriptional attenuator [Mycobacterium gilvum PYR-GCK] gi|145214220|gb|ABP43624.1| cell envelope-related transcriptional attenuator [Mycobacterium gilvum PYR-GCK] Length=409 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 79/119 (67%), Positives = 89/119 (75%), Gaps = 12/119 (10%) Query 16 PGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEV 75 PG+ S P T++SIPRDSYVPIP +G DKINAAF+LGG LL QTVE ATGL +DHYAEV Sbjct 181 PGIGSSTPATMVSIPRDSYVPIPEYGSDKINAAFSLGGPPLLAQTVEQATGLRIDHYAEV 240 Query 76 GFSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 GF FA +VDA DPLAG+DLPAGCQ LDGR ALGYVR+RAT RADL+ Sbjct 241 GFGGFAGMVDAVGGVTVCPAEPINDPLAGIDLPAGCQELDGRNALGYVRSRATARADLD 299 >gi|254773243|ref|ZP_05214759.1| transcriptional regulator [Mycobacterium avium subsp. avium ATCC 25291] Length=317 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 78/119 (66%), Positives = 89/119 (75%), Gaps = 12/119 (10%) Query 16 PGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEV 75 PG+ S T++SIPRDSYVPIP HG+DKINAAFA+GG LL +TVE ATGL + HYAE+ Sbjct 87 PGVGSGVAPTMVSIPRDSYVPIPEHGKDKINAAFAMGGATLLVRTVEQATGLRIAHYAEI 146 Query 76 GFSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 GF FA LVDA DPLAG+DLPAGCQTLDGR ALGYVR+R TPRADL+ Sbjct 147 GFGGFAALVDALGGVRVCPQAPMHDPLAGLDLPAGCQTLDGRNALGYVRSRDTPRADLD 205 >gi|336461875|gb|EGO40730.1| cell envelope-related function transcriptional attenuator [Mycobacterium avium subsp. paratuberculosis S397] Length=317 Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 77/119 (65%), Positives = 88/119 (74%), Gaps = 12/119 (10%) Query 16 PGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEV 75 PG+ S T++SIPRDSYVPIP HG+DKINAAFA+GG LL +TVE ATGL + HYAE+ Sbjct 87 PGVGSGVAPTMVSIPRDSYVPIPEHGKDKINAAFAMGGATLLVRTVEQATGLRIAHYAEI 146 Query 76 GFSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 GF F LVDA DPLAG+DLPAGCQTLDGR ALGYVR+R TPRADL+ Sbjct 147 GFGGFTALVDALGGVRVCSQAPMHDPLAGLDLPAGCQTLDGRNALGYVRSRDTPRADLD 205 >gi|118463120|ref|YP_879480.1| transcriptional regulator [Mycobacterium avium 104] gi|118164407|gb|ABK65304.1| transcriptional regulator [Mycobacterium avium 104] Length=317 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/119 (65%), Positives = 88/119 (74%), Gaps = 12/119 (10%) Query 16 PGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEV 75 PG+ S T++SIPRDSYVPIP HG+DKINAAFA+GG LL +TVE ATGL + HYAE+ Sbjct 87 PGVGSGVAPTMVSIPRDSYVPIPEHGKDKINAAFAMGGATLLVRTVEQATGLRIAHYAEI 146 Query 76 GFSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 GF FA LVDA DPLAG+DLPAGCQTLDGR AL YVR+R TPRADL+ Sbjct 147 GFGGFAALVDALGGVRVCPQAPMHDPLAGLDLPAGCQTLDGRNALAYVRSRDTPRADLD 205 >gi|41406289|ref|NP_959125.1| hypothetical protein MAP0191c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394637|gb|AAS02508.1| hypothetical protein MAP_0191c [Mycobacterium avium subsp. paratuberculosis K-10] Length=401 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/119 (65%), Positives = 88/119 (74%), Gaps = 12/119 (10%) Query 16 PGLASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEV 75 PG+ S T++SIPRDSYVPIP HG+DKINAAFA+GG LL +TVE ATGL + HYAE+ Sbjct 171 PGVGSGVAPTMVSIPRDSYVPIPEHGKDKINAAFAMGGATLLVRTVEQATGLRIAHYAEI 230 Query 76 GFSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 GF F LVDA DPLAG+DLPAGCQTLDGR ALGYVR+R TPRADL+ Sbjct 231 GFGGFTALVDALGGVRVCSQAPMHDPLAGLDLPAGCQTLDGRNALGYVRSRDTPRADLD 289 >gi|54022093|ref|YP_116335.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54013601|dbj|BAD54971.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length=443 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/111 (64%), Positives = 87/111 (79%), Gaps = 12/111 (10%) Query 24 TTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADL 83 TTL+S+PRDSYV IPGHGRDK+NA+FALGG +LL QTVE+ATGL +DHYA++GF+ FA++ Sbjct 225 TTLVSLPRDSYVSIPGHGRDKLNASFALGGPQLLVQTVEIATGLRIDHYAQIGFAGFANV 284 Query 84 VDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 VD DPLAG+DLPAGCQ LDG ALG+VRTRAT AD++ Sbjct 285 VDTLGGIEVCLPQAIDDPLAGIDLPAGCQELDGPQALGFVRTRATALADID 335 >gi|226303672|ref|YP_002763630.1| LytR family regulatory protein [Rhodococcus erythropolis PR4] gi|226182787|dbj|BAH30891.1| putative LytR family regulatory protein [Rhodococcus erythropolis PR4] Length=303 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/111 (66%), Positives = 83/111 (75%), Gaps = 12/111 (10%) Query 24 TTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADL 83 TT++SIPRDSYVPIPG+G DKINAAFA GG LL QTVE ATGL +DHYAE+GFS FA + Sbjct 84 TTMVSIPRDSYVPIPGYGSDKINAAFAFGGAPLLVQTVEEATGLRIDHYAEIGFSGFAGI 143 Query 84 VDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 VDA DPLAG++LPAGCQ L G ALG+VRTRAT ADL+ Sbjct 144 VDAVGGVNVCLTQAIDDPLAGINLPAGCQDLKGSDALGFVRTRATALADLD 194 >gi|229492850|ref|ZP_04386648.1| transcriptional regulator [Rhodococcus erythropolis SK121] gi|229320290|gb|EEN86113.1| transcriptional regulator [Rhodococcus erythropolis SK121] Length=341 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/111 (66%), Positives = 83/111 (75%), Gaps = 12/111 (10%) Query 24 TTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADL 83 TT++SIPRDSYVPIPG+G DKINAAFA GG LL QTVE ATGL +DHYAE+GFS FA + Sbjct 122 TTMVSIPRDSYVPIPGYGSDKINAAFAFGGAPLLVQTVEEATGLRIDHYAEIGFSGFAGI 181 Query 84 VDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 VDA DPLAG++LPAGCQ L G ALG+VRTRAT ADL+ Sbjct 182 VDAVGGVNVCLAQPIDDPLAGINLPAGCQDLKGSDALGFVRTRATALADLD 232 >gi|333917758|ref|YP_004491339.1| putative LytR family regulatory protein [Amycolicicoccus subflavus DQS3-9A1] gi|333479979|gb|AEF38539.1| Putative LytR family regulatory protein [Amycolicicoccus subflavus DQS3-9A1] Length=306 Score = 137 bits (344), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 68/111 (62%), Positives = 83/111 (75%), Gaps = 12/111 (10%) Query 24 TTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADL 83 T L+SIPRDSYVPIPG+G +KINAAFA GG LL QT+E +TG+H+DHY EVGF+ FA + Sbjct 87 TVLVSIPRDSYVPIPGYGYEKINAAFAFGGAPLLVQTIEESTGVHIDHYLEVGFAGFAGI 146 Query 84 VDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 DA DPLAG+DL GCQTL+GR +LG+VR+RATP ADL+ Sbjct 147 TDAVGGVEMCLDNPMTDPLAGIDLAPGCQTLNGRESLGFVRSRATPLADLD 197 >gi|296392622|ref|YP_003657506.1| cell envelope-related transcriptional attenuator [Segniliparus rotundus DSM 44985] gi|296179769|gb|ADG96675.1| cell envelope-related transcriptional attenuator [Segniliparus rotundus DSM 44985] Length=305 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 70/113 (62%), Positives = 81/113 (72%), Gaps = 13/113 (11%) Query 23 PTTLISIPRDSYVPIPGH-GRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFA 81 P T++S+PRDS V IPG GR+K+N A+A GGGRLL QTVELATG+ LDHYAE+GF A Sbjct 98 PATVVSLPRDSSVQIPGESGRNKLNTAYARGGGRLLAQTVELATGVRLDHYAEIGFGGLA 157 Query 82 DLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 DLV A DPLAG+DLP GCQ LDG ALG R+RATPRADL+ Sbjct 158 DLVQAVGGVDVCLDEPINDPLAGIDLPQGCQRLDGAQALGVSRSRATPRADLD 210 >gi|331694213|ref|YP_004330452.1| cell envelope-related transcriptional attenuator [Pseudonocardia dioxanivorans CB1190] gi|326948902|gb|AEA22599.1| cell envelope-related transcriptional attenuator [Pseudonocardia dioxanivorans CB1190] Length=344 Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 67/109 (62%), Positives = 77/109 (71%), Gaps = 12/109 (11%) Query 26 LISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADLVD 85 L+SIPRDSYVPI GHG KINA+++ GG RLL QTVE ATGLH+DHYAE+GF F VD Sbjct 125 LVSIPRDSYVPIAGHGSAKINASYSFGGARLLVQTVEAATGLHIDHYAEIGFGGFVGAVD 184 Query 86 AF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 A DP AG+D+ AGCQ LDG ALGYVRTRATP +D + Sbjct 185 AVGGVDMCIPEAIKDPKAGLDIKAGCQELDGGTALGYVRTRATPGSDFD 233 >gi|317507462|ref|ZP_07965190.1| transcriptional regulator [Segniliparus rugosus ATCC BAA-974] gi|316254243|gb|EFV13585.1| transcriptional regulator [Segniliparus rugosus ATCC BAA-974] Length=304 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 71/118 (61%), Positives = 82/118 (70%), Gaps = 13/118 (11%) Query 18 LASDNPTTLISIPRDSYVPIPGHG-RDKINAAFALGGGRLLTQTVELATGLHLDHYAEVG 76 L P ++S+PRDS VPIPG R+K+N A+A GGGRLL QTVELATGL LDHYAE+G Sbjct 92 LPDSGPAVVVSLPRDSLVPIPGESERNKLNTAYARGGGRLLAQTVELATGLRLDHYAEIG 151 Query 77 FSEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 F ADLV+A DPLAGVDLP GCQ L+G ALG R+RATPRADL+ Sbjct 152 FGGLADLVEAVGGVDVCLDEPLDDPLAGVDLPKGCQHLNGAQALGLSRSRATPRADLD 209 >gi|226363317|ref|YP_002781099.1| LytR family regulatory protein [Rhodococcus opacus B4] gi|226241806|dbj|BAH52154.1| putative LytR family regulatory protein [Rhodococcus opacus B4] Length=406 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 67/112 (60%), Positives = 82/112 (74%), Gaps = 12/112 (10%) Query 23 PTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFAD 82 P T++SIPRDSYV IPG+G DKINA+FA GG +LLTQTVE A+GLH+DHYAE+GF FA Sbjct 185 PATMVSIPRDSYVSIPGYGEDKINASFAFGGPQLLTQTVEEASGLHIDHYAEIGFGGFAG 244 Query 83 LVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 +VDA DPLAG++L GCQ L G ALG+VR+RAT AD++ Sbjct 245 IVDAIGGVDMCLDTAIDDPLAGINLAPGCQELSGAQALGFVRSRATALADID 296 >gi|111021012|ref|YP_703984.1| LytR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110820542|gb|ABG95826.1| probable transcriptional regulator, LytR family protein [Rhodococcus jostii RHA1] Length=403 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/112 (60%), Positives = 82/112 (74%), Gaps = 12/112 (10%) Query 23 PTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFAD 82 P T++SIPRDSYV IPG+G DKINA+FA GG +LLTQTVE A+GLH+DHYAE+GF FA Sbjct 182 PATMVSIPRDSYVSIPGYGEDKINASFAFGGPQLLTQTVEEASGLHIDHYAEIGFGGFAG 241 Query 83 LVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 +VDA DPLAG++L GCQ L G ALG+VR+RAT AD++ Sbjct 242 IVDAIGGVDMCLDTAIDDPLAGINLAPGCQELSGAQALGFVRSRATALADID 293 >gi|302525955|ref|ZP_07278297.1| LytR family transcriptional regulator [Streptomyces sp. AA4] gi|302434850|gb|EFL06666.1| LytR family transcriptional regulator [Streptomyces sp. AA4] Length=309 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/119 (59%), Positives = 84/119 (71%), Gaps = 17/119 (14%) Query 21 DNPT--TLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFS 78 DN T TL+S+PRDS V IPGHG KINAAFALGG +LL QTVE ATGL +DHYAE+GF Sbjct 86 DNSTKPTLLSLPRDSQVKIPGHGTSKINAAFALGGPKLLVQTVEQATGLRMDHYAEIGFG 145 Query 79 EFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTR---ATPRADLE 122 FA +VDA D + G+++ AGCQ LDGR+ALG+VR R ATPR+DL+ Sbjct 146 GFAKIVDAIGGVDMCIDKDMNDTMTGIEIKAGCQKLDGRSALGFVRMRHSDATPRSDLD 204 >gi|169627233|ref|YP_001700882.1| transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169239200|emb|CAM60228.1| Possible transcriptional regulator [Mycobacterium abscessus] Length=313 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 66/110 (60%), Positives = 84/110 (77%), Gaps = 12/110 (10%) Query 25 TLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADLV 84 T++S+PRDSYV IP +G +K+NAA++LGG LLT+TVE ATGL +DHYAE+GF+ FA +V Sbjct 91 TMVSLPRDSYVSIPENGSNKLNAAYSLGGPALLTRTVEEATGLRIDHYAEIGFNGFASVV 150 Query 85 DAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 DA DPLAG+DL GCQ L+G +ALGYVR+RATPRADL+ Sbjct 151 DAIGGVSMCLDEPIQDPLAGIDLTPGCQILNGPSALGYVRSRATPRADLD 200 >gi|300784776|ref|YP_003765067.1| LytR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299794290|gb|ADJ44665.1| LytR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|340526202|gb|AEK41407.1| LytR family transcriptional regulator [Amycolatopsis mediterranei S699] Length=400 Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 71/120 (60%), Positives = 87/120 (73%), Gaps = 18/120 (15%) Query 21 DNPT--TLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFS 78 DN T TL+S+PRDS V IPGHG++KINAAF+LGG +LL QTVE ATGLH+DHYAE+GF Sbjct 176 DNSTKPTLLSLPRDSQVSIPGHGKNKINAAFSLGGPKLLAQTVEGATGLHIDHYAEIGFG 235 Query 79 EFADLVDAF------------DPLAGVDLPAGC-QTLDGRAALGYVRTR---ATPRADLE 122 FA +VDA D + G+ + AGC QTLDGR+ALG+VR R ATPR+DL+ Sbjct 236 GFAKIVDAIGGVDMCIDKDMNDTVTGISIKAGCPQTLDGRSALGFVRMRHSDATPRSDLD 295 >gi|256375726|ref|YP_003099386.1| cell envelope-related transcriptional attenuator [Actinosynnema mirum DSM 43827] gi|255920029|gb|ACU35540.1| cell envelope-related transcriptional attenuator [Actinosynnema mirum DSM 43827] Length=336 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 67/111 (61%), Positives = 82/111 (74%), Gaps = 12/111 (10%) Query 24 TTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADL 83 +TL+SIPRDSYV IP +G++K+NAAFA GGG LL +TVE ATG+ +DHY EVGF FA++ Sbjct 116 STLVSIPRDSYVDIPDNGKNKVNAAFAFGGGPLLARTVEGATGIRIDHYMEVGFGGFANV 175 Query 84 VDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 VDA DPLAG+DLPAGCQ L+G ALG+VRTRA ADL+ Sbjct 176 VDAVGGVEMCLDEPLKDPLAGLDLPAGCQELEGSQALGFVRTRAFATADLQ 226 >gi|344043898|gb|EGV39584.1| hypothetical protein CgS9114_12352 [Corynebacterium glutamicum S9114] Length=285 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 66/110 (60%), Positives = 78/110 (71%), Gaps = 12/110 (10%) Query 25 TLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADLV 84 TL+SIPRDSYV +PG G DK NAAF +GG +LLTQTVE ATGL +DHYAE+G A++V Sbjct 81 TLLSIPRDSYVNVPGWGMDKANAAFTVGGPQLLTQTVEEATGLRIDHYAEIGMGGLANMV 140 Query 85 DA------------FDPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 DA +DPLA +D+ AGCQ DG AALGYVRTRAT DL+ Sbjct 141 DAVGGVEMCPAEAMYDPLANLDIQAGCQEFDGAAALGYVRTRATALGDLD 190 >gi|227501870|ref|ZP_03931919.1| transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|227077364|gb|EEI15327.1| transcriptional regulator [Corynebacterium accolens ATCC 49725] Length=424 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 66/109 (61%), Positives = 77/109 (71%), Gaps = 12/109 (11%) Query 26 LISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADLVD 85 L+SIPRDSYV +PG G DKINAAFA GG +LLTQTVE TGLH+DHYAE+G A++VD Sbjct 221 LVSIPRDSYVEVPGFGMDKINAAFAYGGPKLLTQTVEGNTGLHIDHYAEIGMGGLANVVD 280 Query 86 AF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 + DPLAG+DL GCQ L+G ALGYVRTRAT DL+ Sbjct 281 SVGGVDICVAEPINDPLAGIDLQEGCQKLEGSDALGYVRTRATAMGDLD 329 >gi|262183288|ref|ZP_06042709.1| transcriptional regulator, LytR family protein [Corynebacterium aurimucosum ATCC 700975] Length=330 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 67/117 (58%), Positives = 79/117 (68%), Gaps = 12/117 (10%) Query 18 LASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGF 77 + S L+SIPRDSYV +PG G DK+NAAF GG +LLTQTVE ATGLH+DHYAE+G Sbjct 119 IPSSGKAQLVSIPRDSYVDVPGFGIDKVNAAFTYGGPQLLTQTVEQATGLHIDHYAEIGM 178 Query 78 SEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 A++VD+ DPLAG+DL AGCQ L G ALGYVRTRAT DL+ Sbjct 179 GGLANVVDSVGGVEICVKEPINDPLAGIDLQAGCQKLRGPDALGYVRTRATAMGDLD 235 >gi|297625940|ref|YP_003687703.1| transcriptional regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921705|emb|CBL56263.1| Cell envelope-related transcriptional attenuator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length=452 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 65/111 (59%), Positives = 79/111 (72%), Gaps = 13/111 (11%) Query 24 TTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADL 83 + LIS+PRDSYV IPG+GR+KINAA++ GG LLTQT+E ATGL +D Y E+GF+ FAD+ Sbjct 228 SVLISVPRDSYVTIPGYGRNKINAAYSFGGAPLLTQTIEGATGLRMDGYMEIGFAGFADM 287 Query 84 VDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTR-ATPRADL 121 +DA DPLA +DLPAGCQTL+G ALGYVR R P DL Sbjct 288 IDAVKGVQVCLDEPMADPLANIDLPAGCQTLNGDNALGYVRHRYGDPEGDL 338 >gi|325001740|ref|ZP_08122852.1| cell envelope-related transcriptional attenuator [Pseudonocardia sp. P1] Length=334 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 65/111 (59%), Positives = 77/111 (70%), Gaps = 12/111 (10%) Query 24 TTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADL 83 + L+S+PRDSYVP+PG GR+KINAAFA+GG +LL QTVE ATGL +DHY EVGF F Sbjct 117 SVLVSLPRDSYVPVPGQGRNKINAAFAIGGPQLLVQTVEGATGLQVDHYVEVGFGGFVGA 176 Query 84 VDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 VDA DP AG+D+ GCQ LDG ALGYVRTRAT +D + Sbjct 177 VDAVGGVDMCIPQSIEDPKAGLDIQEGCQELDGGTALGYVRTRATAGSDFD 227 >gi|145296895|ref|YP_001139716.1| hypothetical protein cgR_2795 [Corynebacterium glutamicum R] gi|140846815|dbj|BAF55814.1| hypothetical protein [Corynebacterium glutamicum R] Length=348 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 66/110 (60%), Positives = 77/110 (70%), Gaps = 12/110 (10%) Query 25 TLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADLV 84 TL+SIPRDSYV +PG G DK NAAF +GG LLTQTVE ATGL +DHYAE+G A++V Sbjct 144 TLLSIPRDSYVNVPGWGMDKANAAFTVGGPELLTQTVEEATGLRIDHYAEIGMGGLANMV 203 Query 85 DA------------FDPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 DA +DPLA +D+ AGCQ DG AALGYVRTRAT DL+ Sbjct 204 DAVGGVEMCPAEAMYDPLANLDIQAGCQEFDGAAALGYVRTRATALGDLD 253 >gi|23308989|ref|NP_602092.2| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|21325675|dbj|BAC00296.1| Transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length=345 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 66/110 (60%), Positives = 77/110 (70%), Gaps = 12/110 (10%) Query 25 TLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADLV 84 TL+SIPRDSYV +PG G DK NAAF +GG LLTQTVE ATGL +DHYAE+G A++V Sbjct 141 TLLSIPRDSYVNVPGWGMDKANAAFTVGGPELLTQTVEEATGLRIDHYAEIGMGGLANMV 200 Query 85 DA------------FDPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 DA +DPLA +D+ AGCQ DG AALGYVRTRAT DL+ Sbjct 201 DAVGGVEMCPAEPMYDPLANLDIQAGCQEFDGAAALGYVRTRATALGDLD 250 >gi|306837127|ref|ZP_07470064.1| transcriptional regulator [Corynebacterium accolens ATCC 49726] gi|304566975|gb|EFM42603.1| transcriptional regulator [Corynebacterium accolens ATCC 49726] Length=283 Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 65/109 (60%), Positives = 76/109 (70%), Gaps = 12/109 (11%) Query 26 LISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADLVD 85 L+SIPRDSYV +PG G DKINAAFA GG +LLTQTVE T LH+DHYAE+G A++VD Sbjct 80 LVSIPRDSYVEVPGFGMDKINAAFAYGGPKLLTQTVEGNTDLHIDHYAEIGMGGLANVVD 139 Query 86 AF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 + DPLAG+DL GCQ L+G ALGYVRTRAT DL+ Sbjct 140 SVGGVDICVPEPINDPLAGIDLQEGCQKLEGSDALGYVRTRATAMGDLD 188 >gi|227834222|ref|YP_002835929.1| transcriptional regulator, LytR family [Corynebacterium aurimucosum ATCC 700975] gi|227455238|gb|ACP33991.1| transcriptional regulator, LytR family [Corynebacterium aurimucosum ATCC 700975] Length=479 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 67/117 (58%), Positives = 79/117 (68%), Gaps = 12/117 (10%) Query 18 LASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGF 77 + S L+SIPRDSYV +PG G DK+NAAF GG +LLTQTVE ATGLH+DHYAE+G Sbjct 268 IPSSGKAQLVSIPRDSYVDVPGFGIDKVNAAFTYGGPQLLTQTVEQATGLHIDHYAEIGM 327 Query 78 SEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 A++VD+ DPLAG+DL AGCQ L G ALGYVRTRAT DL+ Sbjct 328 GGLANVVDSVGGVEICVKEPINDPLAGIDLQAGCQKLRGPDALGYVRTRATAMGDLD 384 >gi|62391739|ref|YP_227141.1| cell envelope-related transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|41327081|emb|CAF20925.1| cell envelope-related transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length=414 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 66/110 (60%), Positives = 77/110 (70%), Gaps = 12/110 (10%) Query 25 TLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADLV 84 TL+SIPRDSYV +PG G DK NAAF +GG LLTQTVE ATGL +DHYAE+G A++V Sbjct 210 TLLSIPRDSYVNVPGWGMDKANAAFTVGGPELLTQTVEEATGLRIDHYAEIGMGGLANMV 269 Query 85 DA------------FDPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 DA +DPLA +D+ AGCQ DG AALGYVRTRAT DL+ Sbjct 270 DAVGGVEMCPAEPMYDPLANLDIQAGCQEFDGAAALGYVRTRATALGDLD 319 >gi|225022333|ref|ZP_03711525.1| hypothetical protein CORMATOL_02372 [Corynebacterium matruchotii ATCC 33806] gi|224944930|gb|EEG26139.1| hypothetical protein CORMATOL_02372 [Corynebacterium matruchotii ATCC 33806] Length=285 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 65/110 (60%), Positives = 77/110 (70%), Gaps = 12/110 (10%) Query 25 TLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADLV 84 TL+S+PRDSYV IPG+G DKINAAF GG +LLTQTVE ATGL + HYAE+G A++V Sbjct 81 TLVSLPRDSYVNIPGYGMDKINAAFTFGGPQLLTQTVEEATGLRIKHYAEIGMGGLANVV 140 Query 85 DAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 DA DPLA +D+ AGCQ +DG ALGYVRTRAT DL+ Sbjct 141 DAVSGIEVCPKEPIQDPLAHLDIQAGCQKVDGPTALGYVRTRATAMGDLD 190 >gi|260578624|ref|ZP_05846533.1| transcriptional regulator [Corynebacterium jeikeium ATCC 43734] gi|258603252|gb|EEW16520.1| transcriptional regulator [Corynebacterium jeikeium ATCC 43734] Length=292 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/111 (56%), Positives = 82/111 (74%), Gaps = 13/111 (11%) Query 25 TLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADLV 84 T++S+PRDS+V IPG+G++K+N AF++GG LL QTVE ATG+HLDHYAE+GF FA++V Sbjct 87 TMLSLPRDSWVDIPGNGKNKLNQAFSIGGPALLQQTVEQATGIHLDHYAEIGFGGFANVV 146 Query 85 DAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATP-RADLE 122 DA DP+AG++L AGCQ LDG ALGYVR+R T + DL+ Sbjct 147 DAVGGVEMCLDEPLEDPMAGINLQAGCQELDGPTALGYVRSRYTSAQGDLD 197 >gi|296119128|ref|ZP_06837700.1| transcriptional regulator [Corynebacterium ammoniagenes DSM 20306] gi|295967963|gb|EFG81216.1| transcriptional regulator [Corynebacterium ammoniagenes DSM 20306] Length=239 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 65/109 (60%), Positives = 77/109 (71%), Gaps = 12/109 (11%) Query 26 LISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADLVD 85 L+SIPRDSYV +PG G DKINAAF GG +LL QTVE ATGL +DHYAE+G A++VD Sbjct 36 LVSIPRDSYVNVPGFGEDKINAAFTYGGPQLLAQTVEQATGLGIDHYAEIGMGGLANVVD 95 Query 86 AF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 + DPLAG+DL AGCQ L+G ALGYVRTRAT + DL+ Sbjct 96 SVGGVEICVEEPITDPLAGIDLAAGCQDLEGPDALGYVRTRATAQGDLD 144 >gi|300780255|ref|ZP_07090111.1| transcriptional regulator [Corynebacterium genitalium ATCC 33030] gi|300534365|gb|EFK55424.1| transcriptional regulator [Corynebacterium genitalium ATCC 33030] Length=298 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 64/110 (59%), Positives = 77/110 (70%), Gaps = 12/110 (10%) Query 25 TLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADLV 84 TL+S+PRDSYV IPG+G DKIN+AFA GG +LLT+TVE ATGL +DHYAE+G A L Sbjct 94 TLVSLPRDSYVNIPGYGMDKINSAFAFGGPKLLTETVEQATGLRIDHYAEIGMGGLAGLT 153 Query 85 DAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 DA DPLA +D+ AGCQ +DG +LGYVRTRAT DL+ Sbjct 154 DAVGGVELCPSEPIQDPLANLDVQAGCQKMDGPTSLGYVRTRATAMGDLD 203 >gi|305680444|ref|ZP_07403252.1| putative transcriptional regulator [Corynebacterium matruchotii ATCC 14266] gi|305659975|gb|EFM49474.1| putative transcriptional regulator [Corynebacterium matruchotii ATCC 14266] Length=448 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 65/110 (60%), Positives = 77/110 (70%), Gaps = 12/110 (10%) Query 25 TLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADLV 84 TL+S+PRDSYV IPG+G DKINAAF GG +LLTQTVE ATGL + HYAE+G A++V Sbjct 244 TLVSLPRDSYVNIPGYGMDKINAAFTFGGPQLLTQTVEEATGLRIKHYAEIGMGGLANVV 303 Query 85 DAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 DA DPLA +D+ AGCQ +DG ALGYVRTRAT DL+ Sbjct 304 DAVSGIEVCPKEPIQDPLAHLDIQAGCQKVDGPTALGYVRTRATAMGDLD 353 >gi|172039806|ref|YP_001799520.1| LytR family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171851110|emb|CAQ04086.1| putative transcriptional regulator (LytR family) [Corynebacterium urealyticum DSM 7109] Length=508 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 64/104 (62%), Positives = 76/104 (74%), Gaps = 12/104 (11%) Query 25 TLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGFSEFADLV 84 T+IS+PRDS+V IPG+G +KINAAFALGG LL +TVE ATGL +DHYAEVGF FA+ V Sbjct 304 TMISLPRDSFVNIPGYGENKINAAFALGGPALLQRTVEEATGLRIDHYAEVGFGGFANAV 363 Query 85 DAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRAT 116 D DP+AG++LPAGCQ LDG ALGYVR+R T Sbjct 364 DGVGGVEMCLEEPLEDPMAGINLPAGCQKLDGPNALGYVRSRYT 407 >gi|227505697|ref|ZP_03935746.1| transcriptional regulator [Corynebacterium striatum ATCC 6940] gi|227197665|gb|EEI77713.1| transcriptional regulator [Corynebacterium striatum ATCC 6940] Length=454 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 65/117 (56%), Positives = 79/117 (68%), Gaps = 12/117 (10%) Query 18 LASDNPTTLISIPRDSYVPIPGHGRDKINAAFALGGGRLLTQTVELATGLHLDHYAEVGF 77 + S LISIPRDSYV +PG G DKINAAF GG +LLT+TVE +TGL ++HYAE+G Sbjct 243 IPSSGKAKLISIPRDSYVEVPGFGMDKINAAFTYGGPQLLTETVEQSTGLRINHYAEIGM 302 Query 78 SEFADLVDAF------------DPLAGVDLPAGCQTLDGRAALGYVRTRATPRADLE 122 A++VD+ DPLAG++L AGCQ L GR ALGYVRTRAT DL+ Sbjct 303 GGLANVVDSVGGVDICVKEPIDDPLAGINLQAGCQELRGRDALGYVRTRATAMGDLD 359 Lambda K H 0.321 0.140 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 128325363320 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40