BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3843c Length=342 Score E Sequences producing significant alignments: (Bits) Value gi|15610979|ref|NP_218360.1| transmembrane protein [Mycobacteriu... 669 0.0 gi|253800891|ref|YP_003033893.1| hypothetical protein TBMG_03889... 668 0.0 gi|289445444|ref|ZP_06435188.1| conserved membrane protein [Myco... 666 0.0 gi|31795017|ref|NP_857510.1| transmembrane protein [Mycobacteriu... 665 0.0 gi|340628812|ref|YP_004747264.1| hypothetical protein MCAN_38621... 662 0.0 gi|339296651|gb|AEJ48762.1| transmembrane protein [Mycobacterium... 610 8e-173 gi|289572097|ref|ZP_06452324.1| conserved membrane protein [Myco... 582 4e-164 gi|289755976|ref|ZP_06515354.1| transmembrane protein [Mycobacte... 499 2e-139 gi|167969960|ref|ZP_02552237.1| conserved transmembrane protein ... 446 3e-123 gi|297733521|ref|ZP_06962639.1| putative transmembrane protein [... 443 2e-122 gi|297636526|ref|ZP_06954306.1| putative transmembrane protein [... 421 1e-115 gi|118620030|ref|YP_908362.1| hypothetical protein MUL_5016 [Myc... 395 4e-108 gi|289760010|ref|ZP_06519388.1| transmembrane protein [Mycobacte... 388 8e-106 gi|183985363|ref|YP_001853654.1| hypothetical protein MMAR_5395 ... 385 5e-105 gi|41406287|ref|NP_959123.1| hypothetical protein MAP0189 [Mycob... 344 1e-92 gi|15826918|ref|NP_301181.1| hypothetical protein ML0073 [Mycoba... 333 3e-89 gi|289748374|ref|ZP_06507752.1| transmembrane protein [Mycobacte... 329 4e-88 gi|294993028|ref|ZP_06798719.1| putative transmembrane protein [... 324 1e-86 gi|336461873|gb|EGO40728.1| hypothetical protein MAPs_26210 [Myc... 302 4e-80 gi|342860096|ref|ZP_08716748.1| hypothetical protein MCOL_14495 ... 294 1e-77 gi|254773241|ref|ZP_05214757.1| hypothetical protein MaviaA2_009... 292 4e-77 gi|108802004|ref|YP_642201.1| hypothetical protein Mmcs_5041 [My... 292 6e-77 gi|145221731|ref|YP_001132409.1| hypothetical protein Mflv_1139 ... 287 2e-75 gi|315446533|ref|YP_004079412.1| hypothetical protein Mspyr1_504... 287 2e-75 gi|126437984|ref|YP_001073675.1| hypothetical protein Mjls_5421 ... 286 3e-75 gi|120406610|ref|YP_956439.1| hypothetical protein Mvan_5668 [My... 277 2e-72 gi|296166973|ref|ZP_06849387.1| transmembrane protein [Mycobacte... 274 2e-71 gi|118466756|ref|YP_879478.1| hypothetical protein MAV_0184 [Myc... 270 3e-70 gi|289441281|ref|ZP_06431025.1| transmembrane protein [Mycobacte... 268 9e-70 gi|240168320|ref|ZP_04746979.1| hypothetical protein MkanA1_0334... 260 3e-67 gi|118469079|ref|YP_890637.1| transmembrane protein [Mycobacteri... 217 2e-54 gi|169627227|ref|YP_001700876.1| hypothetical protein MAB_0122 [... 203 3e-50 gi|333992796|ref|YP_004525410.1| transmembrane protein [Mycobact... 201 2e-49 gi|254822002|ref|ZP_05227003.1| hypothetical protein MintA_18862... 197 2e-48 gi|289764029|ref|ZP_06523407.1| predicted protein [Mycobacterium... 179 7e-43 gi|54022088|ref|YP_116330.1| hypothetical protein nfa1240 [Nocar... 128 1e-27 gi|111021006|ref|YP_703978.1| hypothetical protein RHA1_ro04023 ... 113 4e-23 gi|226303659|ref|YP_002763617.1| hypothetical protein RER_01700 ... 113 5e-23 gi|325672799|ref|ZP_08152494.1| brp/Blh family beta-carotene 15,... 110 5e-22 gi|312137664|ref|YP_004005000.1| integral membrane protein [Rhod... 109 5e-22 gi|226363311|ref|YP_002781093.1| hypothetical protein ROP_39010 ... 106 5e-21 gi|296137882|ref|YP_003645125.1| hypothetical protein Tpau_0132 ... 95.5 1e-17 gi|262200201|ref|YP_003271409.1| hypothetical protein Gbro_0168 ... 82.8 8e-14 gi|229492821|ref|ZP_04386619.1| putative membrane protein [Rhodo... 77.8 3e-12 gi|326384351|ref|ZP_08206032.1| hypothetical protein SCNU_15509 ... 73.2 6e-11 gi|333917754|ref|YP_004491335.1| hypothetical protein AS9A_0075 ... 72.4 9e-11 gi|343926281|ref|ZP_08765790.1| hypothetical protein GOALK_056_0... 68.9 1e-09 gi|300782073|ref|YP_003762364.1| hypothetical protein AMED_0138 ... 55.8 9e-06 gi|325000658|ref|ZP_08121770.1| hypothetical protein PseP1_17902... 55.8 1e-05 gi|302531497|ref|ZP_07283839.1| predicted protein [Streptomyces ... 54.7 2e-05 >gi|15610979|ref|NP_218360.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|15843467|ref|NP_338504.1| hypothetical protein MT3951 [Mycobacterium tuberculosis CDC1551] gi|148663711|ref|YP_001285234.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra] 39 more sequence titles Length=342 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/342 (99%), Positives = 342/342 (100%), Gaps = 0/342 (0%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 +IQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP Sbjct 1 MIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 Query 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP 120 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP Sbjct 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP 120 Query 121 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG 180 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG Sbjct 121 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG 180 Query 181 TTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY 240 TTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY Sbjct 181 TTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY 240 Query 241 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV 300 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV Sbjct 241 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV 300 Query 301 FEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 FEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA Sbjct 301 FEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 >gi|253800891|ref|YP_003033893.1| hypothetical protein TBMG_03889 [Mycobacterium tuberculosis KZN 1435] gi|289556110|ref|ZP_06445320.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605] gi|253322395|gb|ACT26998.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435] gi|289440742|gb|EFD23235.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605] gi|328460619|gb|AEB06042.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207] gi|344221683|gb|AEN02314.1| transmembrane protein [Mycobacterium tuberculosis CTRI-2] Length=342 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/342 (99%), Positives = 341/342 (99%), Gaps = 0/342 (0%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 +IQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP Sbjct 1 MIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 Query 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP 120 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP Sbjct 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP 120 Query 121 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG 180 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG Sbjct 121 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG 180 Query 181 TTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY 240 TTI LLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY Sbjct 181 TTIALLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY 240 Query 241 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV 300 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV Sbjct 241 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV 300 Query 301 FEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 FEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA Sbjct 301 FEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 >gi|289445444|ref|ZP_06435188.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A] gi|289418402|gb|EFD15603.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A] Length=342 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/342 (99%), Positives = 341/342 (99%), Gaps = 0/342 (0%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 +IQVCSQCGT WNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP Sbjct 1 MIQVCSQCGTRWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 Query 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP 120 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP Sbjct 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP 120 Query 121 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG 180 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG Sbjct 121 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG 180 Query 181 TTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY 240 TTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY Sbjct 181 TTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY 240 Query 241 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV 300 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV Sbjct 241 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV 300 Query 301 FEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 FEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA Sbjct 301 FEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 >gi|31795017|ref|NP_857510.1| transmembrane protein [Mycobacterium bovis AF2122/97] gi|121639761|ref|YP_979985.1| putative transmembrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224992256|ref|YP_002646946.1| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo 172] 8 more sequence titles Length=342 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/342 (99%), Positives = 340/342 (99%), Gaps = 0/342 (0%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 +IQVCSQCGT WNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP Sbjct 1 MIQVCSQCGTRWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 Query 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP 120 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTP YAGIPRWGLTDHVDQAPVPASAKAGPSP Sbjct 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPHYAGIPRWGLTDHVDQAPVPASAKAGPSP 120 Query 121 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG 180 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG Sbjct 121 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG 180 Query 181 TTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY 240 TTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY Sbjct 181 TTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY 240 Query 241 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV 300 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV Sbjct 241 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV 300 Query 301 FEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 FEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA Sbjct 301 FEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 >gi|340628812|ref|YP_004747264.1| hypothetical protein MCAN_38621 [Mycobacterium canettii CIPT 140010059] gi|340007002|emb|CCC46193.1| putative conserved transmembrane protein [Mycobacterium canettii CIPT 140010059] Length=342 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/342 (99%), Positives = 340/342 (99%), Gaps = 0/342 (0%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 +IQVCSQCGT WNVRERQRVWCPRCRG LLAPLADMPAEARWRTPARP+VPTASDTRRTP Sbjct 1 MIQVCSQCGTRWNVRERQRVWCPRCRGTLLAPLADMPAEARWRTPARPRVPTASDTRRTP 60 Query 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP 120 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP Sbjct 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP 120 Query 121 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG 180 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG Sbjct 121 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG 180 Query 181 TTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY 240 TTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY Sbjct 181 TTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY 240 Query 241 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV 300 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV Sbjct 241 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV 300 Query 301 FEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 FEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA Sbjct 301 FEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 >gi|339296651|gb|AEJ48762.1| transmembrane protein [Mycobacterium tuberculosis CCDC5079] gi|339300248|gb|AEJ52358.1| transmembrane protein [Mycobacterium tuberculosis CCDC5180] Length=315 Score = 610 bits (1574), Expect = 8e-173, Method: Compositional matrix adjust. Identities = 315/315 (100%), Positives = 315/315 (100%), Gaps = 0/315 (0%) Query 28 MLLAPLADMPAEARWRTPARPQVPTASDTRRTPPRLPPGFRWIAVRPGAAPPPRHGPRLR 87 MLLAPLADMPAEARWRTPARPQVPTASDTRRTPPRLPPGFRWIAVRPGAAPPPRHGPRLR Sbjct 1 MLLAPLADMPAEARWRTPARPQVPTASDTRRTPPRLPPGFRWIAVRPGAAPPPRHGPRLR 60 Query 88 GPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVVRYVL 147 GPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVVRYVL Sbjct 61 GPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVVRYVL 120 Query 148 LVINRNTLLNSVVASASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERR 207 LVINRNTLLNSVVASASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERR Sbjct 121 LVINRNTLLNSVVASASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERR 180 Query 208 SARELWAGCLLPMVNLLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFAT 267 SARELWAGCLLPMVNLLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFAT Sbjct 181 SARELWAGCLLPMVNLLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFAT 240 Query 268 SWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAP 327 SWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAP Sbjct 241 SWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAP 300 Query 328 ASSVAVELDGQEPAA 342 ASSVAVELDGQEPAA Sbjct 301 ASSVAVELDGQEPAA 315 >gi|289572097|ref|ZP_06452324.1| conserved membrane protein [Mycobacterium tuberculosis T17] gi|289545851|gb|EFD49499.1| conserved membrane protein [Mycobacterium tuberculosis T17] Length=300 Score = 582 bits (1499), Expect = 4e-164, Method: Compositional matrix adjust. Identities = 300/300 (100%), Positives = 300/300 (100%), Gaps = 0/300 (0%) Query 43 RTPARPQVPTASDTRRTPPRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLT 102 RTPARPQVPTASDTRRTPPRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLT Sbjct 1 RTPARPQVPTASDTRRTPPRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLT 60 Query 103 DHVDQAPVPASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVAS 162 DHVDQAPVPASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVAS Sbjct 61 DHVDQAPVPASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVAS 120 Query 163 ASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVN 222 ASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVN Sbjct 121 ASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVN 180 Query 223 LLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTM 282 LLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTM Sbjct 181 LLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTM 240 Query 283 MVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 MVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA Sbjct 241 MVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 300 >gi|289755976|ref|ZP_06515354.1| transmembrane protein [Mycobacterium tuberculosis EAS054] gi|289696563|gb|EFD63992.1| transmembrane protein [Mycobacterium tuberculosis EAS054] Length=258 Score = 499 bits (1285), Expect = 2e-139, Method: Compositional matrix adjust. Identities = 258/258 (100%), Positives = 258/258 (100%), Gaps = 0/258 (0%) Query 85 RLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVVR 144 RLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVVR Sbjct 1 RLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVVR 60 Query 145 YVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLP 204 YVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLP Sbjct 61 YVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLP 120 Query 205 ERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFA 264 ERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFA Sbjct 121 ERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFA 180 Query 265 FATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGR 324 FATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGR Sbjct 181 FATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGR 240 Query 325 SAPASSVAVELDGQEPAA 342 SAPASSVAVELDGQEPAA Sbjct 241 SAPASSVAVELDGQEPAA 258 >gi|167969960|ref|ZP_02552237.1| conserved transmembrane protein [Mycobacterium tuberculosis H37Ra] gi|254552959|ref|ZP_05143406.1| transmembrane protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length=233 Score = 446 bits (1146), Expect = 3e-123, Method: Compositional matrix adjust. Identities = 232/233 (99%), Positives = 233/233 (100%), Gaps = 0/233 (0%) Query 110 VPASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGV 169 +PASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGV Sbjct 1 MPASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGV 60 Query 170 LVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLY 229 LVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLY Sbjct 61 LVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLY 120 Query 230 VIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLC 289 VIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLC Sbjct 121 VIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLC 180 Query 290 AAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 AAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA Sbjct 181 AAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 233 >gi|297733521|ref|ZP_06962639.1| putative transmembrane protein [Mycobacterium tuberculosis KZN R506] gi|313660852|ref|ZP_07817732.1| putative transmembrane protein [Mycobacterium tuberculosis KZN V2475] Length=233 Score = 443 bits (1140), Expect = 2e-122, Method: Compositional matrix adjust. Identities = 231/233 (99%), Positives = 232/233 (99%), Gaps = 0/233 (0%) Query 110 VPASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGV 169 +PASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGV Sbjct 1 MPASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGV 60 Query 170 LVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLY 229 LVSLAAIAAAGTTI LLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLY Sbjct 61 LVSLAAIAAAGTTIALLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLY 120 Query 230 VIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLC 289 VIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLC Sbjct 121 VIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLC 180 Query 290 AAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 AAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA Sbjct 181 AAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 233 >gi|297636526|ref|ZP_06954306.1| putative transmembrane protein [Mycobacterium tuberculosis KZN 4207] Length=220 Score = 421 bits (1081), Expect = 1e-115, Method: Compositional matrix adjust. Identities = 218/220 (99%), Positives = 219/220 (99%), Gaps = 0/220 (0%) Query 123 VRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAGTT 182 +RTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAGTT Sbjct 1 MRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAGTT 60 Query 183 IVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRYTR 242 I LLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRYTR Sbjct 61 IALLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRYTR 120 Query 243 LRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFE 302 LRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFE Sbjct 121 LRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFE 180 Query 303 GFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 GFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA Sbjct 181 GFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 220 >gi|118620030|ref|YP_908362.1| hypothetical protein MUL_5016 [Mycobacterium ulcerans Agy99] gi|118572140|gb|ABL06891.1| conserved hypothetical transmembrane protein [Mycobacterium ulcerans Agy99] Length=357 Score = 395 bits (1016), Expect = 4e-108, Method: Compositional matrix adjust. Identities = 220/358 (62%), Positives = 260/358 (73%), Gaps = 17/358 (4%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPA-EARWRTPARPQVPTASDTRRT 59 +IQVCSQCGT WNVRERQRVWCPRCRG L+APL A + + RT PQ AS RR Sbjct 1 MIQVCSQCGTRWNVRERQRVWCPRCRGALMAPLTGAAAADPQSRTSVGPQR-VASTARRA 59 Query 60 PPRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQ---APVPASAKA 116 PRLPPGFRWIAVRPGAAPP R R GPTPRY +PRWGL D V Q PVP + K Sbjct 60 APRLPPGFRWIAVRPGAAPPHRPRRRAYGPTPRYTVMPRWGLGDRVAQPGPLPVPVATKT 119 Query 117 GPSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAI 176 GP+ A VRT L ++LV A V+ VRYVLL+INR+ LLNSV+A +VW+GV VS AA+ Sbjct 120 GPAAATVRTLLFATMLVLGAAAFVYAVRYVLLIINRDILLNSVLAGIAVWVGVAVSFAAL 179 Query 177 AAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALV 236 AA G V+L++WLVARRA AF + GLPE RS +LWAGCL P+ NLLWAP+Y+IELA+V Sbjct 180 AAMGVCFVVLIKWLVARRAVAFAYYGLPEHRSTLQLWAGCLTPLANLLWAPVYLIELAVV 239 Query 237 EDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAA 296 ED Y RL++PI+VWWI W+VS A S+FA ATS+ +DAQGIANNT M+V+AY AAAAV Sbjct 240 EDTYQRLKKPILVWWIAWVVSTATSLFAIATSFSSDAQGIANNTVMVVVAYALAAAAVGT 299 Query 297 AARVFEGFEQKPVERPAHRWVVVNTD---GRSAPA---------SSVAVELDGQEPAA 342 +RVFEGFE KPV+RPAHRW+V+ D GRSA + A EL+GQEPAA Sbjct 300 VSRVFEGFECKPVQRPAHRWLVMGQDDQPGRSATDEDDRVDAAPDADAFELEGQEPAA 357 >gi|289760010|ref|ZP_06519388.1| transmembrane protein [Mycobacterium tuberculosis T85] gi|289715574|gb|EFD79586.1| transmembrane protein [Mycobacterium tuberculosis T85] Length=200 Score = 388 bits (996), Expect = 8e-106, Method: Compositional matrix adjust. Identities = 199/200 (99%), Positives = 200/200 (100%), Gaps = 0/200 (0%) Query 143 VRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQG 202 +RYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQG Sbjct 1 MRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQG 60 Query 203 LPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISM 262 LPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISM Sbjct 61 LPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISM 120 Query 263 FAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTD 322 FAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTD Sbjct 121 FAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTD 180 Query 323 GRSAPASSVAVELDGQEPAA 342 GRSAPASSVAVELDGQEPAA Sbjct 181 GRSAPASSVAVELDGQEPAA 200 >gi|183985363|ref|YP_001853654.1| hypothetical protein MMAR_5395 [Mycobacterium marinum M] gi|183178689|gb|ACC43799.1| conserved hypothetical transmembrane protein [Mycobacterium marinum M] Length=357 Score = 385 bits (990), Expect = 5e-105, Method: Compositional matrix adjust. Identities = 222/358 (63%), Positives = 264/358 (74%), Gaps = 17/358 (4%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPA-EARWRTPARPQVPTASDTRRT 59 +IQVCSQCGT WNVRERQRVWCPRCRG L+APL A + + RT PQ AS RR Sbjct 1 MIQVCSQCGTRWNVRERQRVWCPRCRGALMAPLTGAAAADPQSRTSVGPQR-VASTARRA 59 Query 60 PPRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQ---APVPASAKA 116 PRLPPGFRWIAVRPGAAPP R R GPTPRY +PRWGL D V Q +PVP + K Sbjct 60 APRLPPGFRWIAVRPGAAPPHRPRRRAYGPTPRYTVMPRWGLGDRVAQPGPSPVPVATKT 119 Query 117 GPSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAI 176 GP+ A VRT L ++LV A V+ VRYVLL+INR+ LLNSV+A +VW+GV VS AA+ Sbjct 120 GPAAATVRTLLFATMLVLGAAAFVYAVRYVLLIINRDILLNSVLAGIAVWVGVAVSFAAL 179 Query 177 AAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALV 236 AA G V+L++WLVARRAAAF + GLPE RS +LWAGCL P+ NLLWAP+Y+IELA+V Sbjct 180 AAMGVCFVVLIKWLVARRAAAFAYYGLPEHRSTLQLWAGCLTPLANLLWAPVYLIELAVV 239 Query 237 EDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAA 296 ED Y RL++PI+VWWI W+VS A S+FA ATS+ +DAQGIANNT M+V+AY AAAAV Sbjct 240 EDTYQRLKKPILVWWIAWVVSTATSLFAIATSFSSDAQGIANNTVMVVVAYALAAAAVGT 299 Query 297 AARVFEGFEQKPVERPAHRWVVVNTD---GRSAPA---------SSVAVELDGQEPAA 342 +RVFEGFE+KPV+RPAHRW+V+ D GRSA + AVEL+GQEPAA Sbjct 300 VSRVFEGFERKPVQRPAHRWLVMGQDDQPGRSATDEDDRVDAAPDADAVELEGQEPAA 357 >gi|41406287|ref|NP_959123.1| hypothetical protein MAP0189 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394635|gb|AAS02506.1| hypothetical protein MAP_0189 [Mycobacterium avium subsp. paratuberculosis K-10] Length=334 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 211/343 (62%), Positives = 250/343 (73%), Gaps = 10/343 (2%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 +IQVCSQCGT WNVR+RQR WCPRCRG L+APL D P A +RTP Sbjct 1 MIQVCSQCGTRWNVRDRQREWCPRCRGALMAPLPDAPPAG---------PARAPGWQRTP 51 Query 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPA-SAKAGPS 119 PRLPPG+RWIA+RPGAAPPPR G R GPTPRYA IPRWGL D V+ V A SA GP Sbjct 52 PRLPPGYRWIALRPGAAPPPRRGRRPLGPTPRYAVIPRWGLADRVEPPAVAAASAHPGPP 111 Query 120 PAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAA 179 VRTT V +LV IA +V+VVRY+LLVINR+TLL S VA + WLGVL S+ A+ A Sbjct 112 AQLVRTTSFVGVLVLGIAALVYVVRYLLLVINRDTLLYSWVAIGADWLGVLASVGAVGAV 171 Query 180 GTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDR 239 + V L+RW++ARRAA F H GLP+ RSAR LWAGC++P+ NLLWAP++VIELAL+E+ Sbjct 172 IASGVALIRWMIARRAAVFAHHGLPDPRSARALWAGCVVPLANLLWAPVFVIELALLEEH 231 Query 240 YTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAAR 299 Y RL+ PI+ WWI W+ S A+S+ A ATS+VTDAQGIANNT +MV YL AAA +AAA R Sbjct 232 YHRLKGPILQWWITWVCSYAVSVSAIATSFVTDAQGIANNTILMVFGYLFAAATLAAATR 291 Query 300 VFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 +FEGF++KPV RPAHRWV+V DG PA VE GQEPAA Sbjct 292 IFEGFQRKPVARPAHRWVMVPDDGPPPPAPGAPVEFKGQEPAA 334 >gi|15826918|ref|NP_301181.1| hypothetical protein ML0073 [Mycobacterium leprae TN] gi|221229396|ref|YP_002502812.1| hypothetical protein MLBr_00073 [Mycobacterium leprae Br4923] gi|13092465|emb|CAC29581.1| putative membrane protein [Mycobacterium leprae] gi|219932503|emb|CAR70166.1| putative membrane protein [Mycobacterium leprae Br4923] Length=344 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 220/349 (64%), Positives = 260/349 (75%), Gaps = 12/349 (3%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMP-AEARWRT----PARPQVPTASD 55 +IQVCSQCGT WNVRER+R WC RCRG L+AP A+MP A +W + PA VP A Sbjct 1 MIQVCSQCGTRWNVRERRREWCLRCRGALIAPQAEMPTAVKQWSSHVGLPAG-IVPEALG 59 Query 56 TRRTPPRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAP--VPAS 113 +RTPP GFRWIAVRPGAAPP R R PTPRYA +PRWGL D VDQ + A Sbjct 60 WQRTPP----GFRWIAVRPGAAPPNRRRQRHHVPTPRYAVMPRWGLADRVDQDSTWIQAP 115 Query 114 AKAGPSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSL 173 K GPS A VRTTL V++LVF++A +V+VVRYVLLVINRNTLLN VA+ + WLGV+ SL Sbjct 116 LKPGPSSAKVRTTLFVAVLVFTLAALVYVVRYVLLVINRNTLLNFGVAAIADWLGVIASL 175 Query 174 AAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIEL 233 AAIAA ++ L RWL+ARRAAA+ H +PE+RS+ EL AGCLLP+VNLLWAP+YVIEL Sbjct 176 AAIAATLACVMALSRWLIARRAAAYAHHAVPEQRSSWELRAGCLLPLVNLLWAPVYVIEL 235 Query 234 ALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAA 293 AL+E+ YT+L++PI +WWIVW+ S IS+ A TSW DAQGIANNT MV AYL AAAA Sbjct 236 ALMENHYTQLQKPIFMWWIVWVFSYVISVVAVVTSWAKDAQGIANNTVAMVFAYLFAAAA 295 Query 294 VAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 VAA ARVFEGFE K ++RP HRWVVV+ G S +VEL+GQEPAA Sbjct 296 VAAVARVFEGFECKSIKRPVHRWVVVHLGGSVVHPSPGSVELEGQEPAA 344 >gi|289748374|ref|ZP_06507752.1| transmembrane protein [Mycobacterium tuberculosis T92] gi|289688961|gb|EFD56390.1| transmembrane protein [Mycobacterium tuberculosis T92] Length=167 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 166/167 (99%), Positives = 167/167 (100%), Gaps = 0/167 (0%) Query 176 IAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELAL 235 +AAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELAL Sbjct 1 MAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELAL 60 Query 236 VEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVA 295 VEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVA Sbjct 61 VEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVA 120 Query 296 AAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 AAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA Sbjct 121 AAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 167 >gi|294993028|ref|ZP_06798719.1| putative transmembrane protein [Mycobacterium tuberculosis 210] Length=163 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 163/163 (100%), Positives = 163/163 (100%), Gaps = 0/163 (0%) Query 180 GTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDR 239 GTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDR Sbjct 1 GTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDR 60 Query 240 YTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAAR 299 YTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAAR Sbjct 61 YTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAAR 120 Query 300 VFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 VFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA Sbjct 121 VFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 163 >gi|336461873|gb|EGO40728.1| hypothetical protein MAPs_26210 [Mycobacterium avium subsp. paratuberculosis S397] Length=305 Score = 302 bits (774), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 181/287 (64%), Positives = 217/287 (76%), Gaps = 1/287 (0%) Query 57 RRTPPRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPA-SAK 115 +RTPPRLPPG+RWIA+RPGAAPPPR G R GPTPRYA IPRWGL D V+ V A SA Sbjct 19 QRTPPRLPPGYRWIALRPGAAPPPRRGRRPLGPTPRYAVIPRWGLADRVEPPAVAAASAH 78 Query 116 AGPSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAA 175 GP VRTT V +LV IA +V+VVRY+LLVINR+TLL S VA + WLGVL S+ A Sbjct 79 PGPPAQLVRTTSFVGVLVLGIAALVYVVRYLLLVINRDTLLYSWVAIGADWLGVLASVGA 138 Query 176 IAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELAL 235 + A + V L+RW++ARRAA F H GLP+ RSAR LWAGC++P+ NLLWAP++VIELAL Sbjct 139 VGAVIASGVALIRWMIARRAAVFAHHGLPDPRSARALWAGCVVPLANLLWAPVFVIELAL 198 Query 236 VEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVA 295 +E+ Y RL+ PI+ WWI W+ S A+S+ A ATS+VTDAQGIANNT +MV YL AAA +A Sbjct 199 LEEHYHRLKGPILQWWITWVCSYAVSVSAIATSFVTDAQGIANNTILMVFGYLFAAATLA 258 Query 296 AAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 AA R+FEGF++KPV RPAHRWV+V DG PA VE GQEPAA Sbjct 259 AATRIFEGFQRKPVARPAHRWVMVPDDGPPPPAPGAPVEFKGQEPAA 305 >gi|342860096|ref|ZP_08716748.1| hypothetical protein MCOL_14495 [Mycobacterium colombiense CECT 3035] gi|342132474|gb|EGT85703.1| hypothetical protein MCOL_14495 [Mycobacterium colombiense CECT 3035] Length=320 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 196/302 (65%), Positives = 225/302 (75%), Gaps = 5/302 (1%) Query 44 TPARPQVPTASDTRRTPPRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTD 103 T ARP A +RTPPRLPPG+RWIAVRPGAAPPPR G R GPTPRYA IPRWGL D Sbjct 21 TQARPS--AAPGWQRTPPRLPPGYRWIAVRPGAAPPPRRGRRPLGPTPRYAVIPRWGLAD 78 Query 104 HVDQAPVPASAKAGPSPAA---VRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVV 160 V+Q PV A VRTT VS+LV SIA +V+VVRYVLLVINRNTLLNS V Sbjct 79 RVEQMPVATDAAPAQPGPPAQIVRTTSFVSVLVLSIAALVYVVRYVLLVINRNTLLNSWV 138 Query 161 ASASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPM 220 A A+ WLGVL S+ A AA + V L+RW++ARRAA F H GLPE+RSAR LWAGC++P+ Sbjct 139 AFAADWLGVLASVGAGAAVIASGVQLIRWMIARRAAVFAHHGLPEQRSARALWAGCVVPL 198 Query 221 VNLLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNT 280 NLLWAP+YVIELAL+E+ Y RLR I+ WW W+ S A+S+ A ATS+ TDAQGIANNT Sbjct 199 ANLLWAPVYVIELALLEEHYARLRGAILQWWGAWVCSYAVSIAAIATSFATDAQGIANNT 258 Query 281 TMMVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEP 340 +MV AYL AAA +AAA RVFEGF++KPV RPAHRWV V DG A AS+ VEL GQEP Sbjct 259 VLMVFAYLLAAATLAAATRVFEGFQRKPVARPAHRWVAVPADGTPARASAAPVELKGQEP 318 Query 341 AA 342 AA Sbjct 319 AA 320 >gi|254773241|ref|ZP_05214757.1| hypothetical protein MaviaA2_00966 [Mycobacterium avium subsp. avium ATCC 25291] Length=306 Score = 292 bits (748), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 180/288 (63%), Positives = 217/288 (76%), Gaps = 2/288 (0%) Query 57 RRTPPRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKA 116 +RTPPRLPPG+RWIAVRPGAAPPPR G R GPTPRYA IPRWGL D V+ P A+A A Sbjct 19 QRTPPRLPPGYRWIAVRPGAAPPPRRGRRPLGPTPRYAVIPRWGLADRVEPPPAVAAASA 78 Query 117 --GPSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLA 174 GP VR+T V +LV IA +V+VVRY+LLVINR+TLL S VA + WLGVL S+ Sbjct 79 HPGPPAQLVRSTSFVGVLVLGIAALVYVVRYLLLVINRDTLLYSWVAIGADWLGVLASVG 138 Query 175 AIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELA 234 A+ A + V L+RW++ARRAA F H GLP+ RSAR L AGC++P+ NLLWAP++VIELA Sbjct 139 AVGAVIASGVALIRWMIARRAAVFAHHGLPDPRSARALGAGCVVPLANLLWAPVFVIELA 198 Query 235 LVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAV 294 L+E+ Y RL+ PI+ WWI W+ S A+S+ A ATS+VTDAQGIANNT +MV YL AAA + Sbjct 199 LLEEHYHRLKGPILQWWITWVCSYAVSVSAIATSFVTDAQGIANNTILMVFGYLFAAATL 258 Query 295 AAAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 AAA R+FEGF++KPV RPAHRWV+V DG PA VE GQEPAA Sbjct 259 AAATRIFEGFQRKPVARPAHRWVMVPDDGPPPPAPGAPVEFKGQEPAA 306 >gi|108802004|ref|YP_642201.1| hypothetical protein Mmcs_5041 [Mycobacterium sp. MCS] gi|119871156|ref|YP_941108.1| hypothetical protein Mkms_5129 [Mycobacterium sp. KMS] gi|108772423|gb|ABG11145.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119697245|gb|ABL94318.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=342 Score = 292 bits (747), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 180/347 (52%), Positives = 228/347 (66%), Gaps = 10/347 (2%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 +IQVCS+CGT WNVR+R+R CPRC+G L+AP A A W AR P A+ P Sbjct 1 MIQVCSRCGTRWNVRDRERHVCPRCQGALMAPAAVPTPGAEWS--ARQVRPGAAGA---P 55 Query 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQA-PVPASAKAGPS 119 PRLP G+RWIAVRPGA PPPR R GPTPRY IPRWGL +H D P A + GPS Sbjct 56 PRLPAGYRWIAVRPGAPPPPRARRRPLGPTPRYPTIPRWGLVEHFDTVDPSAAETRTGPS 115 Query 120 PAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAA 179 +AVRTTLL+++ V A V +RY+LL+INR LLN +VA A+ WL V +S+ A Sbjct 116 TSAVRTTLLITMGVLGAAAAVHALRYLLLLINRTVLLNPIVAGAATWLAVALSVVAAFLV 175 Query 180 GTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDR 239 +IVLL WL+ARR AA+ ++G + R A L GCL+P VNL +AP+YV+ELA VE R Sbjct 176 VGSIVLLTNWLIARRGAAYAYRGQSDPRDALRLRLGCLVPFVNLFFAPVYVLELAGVESR 235 Query 240 YTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAAR 299 + LR+PI+VWWI+W++S +S+ + ATS+ TD QGIA+NT + +AYL A A + A R Sbjct 236 TSTLRKPIIVWWILWVLSTVVSVSSIATSFTTDPQGIADNTMITTIAYLTALATLLVAYR 295 Query 300 VFEGFEQKPVERPAHRWVVVNTDGRSAP----ASSVAVELDGQEPAA 342 V GFEQ V RP HRWV+V D + A S+ VE GQ PAA Sbjct 296 VVSGFEQASVSRPVHRWVMVPDDAQDAQHPEGQSARPVESSGQNPAA 342 >gi|145221731|ref|YP_001132409.1| hypothetical protein Mflv_1139 [Mycobacterium gilvum PYR-GCK] gi|145214217|gb|ABP43621.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=331 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 181/347 (53%), Positives = 227/347 (66%), Gaps = 21/347 (6%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 +IQVCSQCGT WNVR+RQRVWCPRCRG LLAP PA+ + PA Sbjct 1 MIQVCSQCGTRWNVRDRQRVWCPRCRGTLLAPSGPAPAQGWDQRPA-------------- 46 Query 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP 120 R P G+RW+AVRPGA P PR R GPTPRY IPRWGL +H D + + GPS Sbjct 47 ARPPAGYRWVAVRPGAPPRPRRVRRELGPTPRYQSIPRWGLVEHFDAPAEQTAERTGPSA 106 Query 121 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG 180 AVR LLV++ A V VVRY+LL++NR LL +A+A+ W GV VS+ A+ Sbjct 107 NAVRALLLVTMAALGAAAFVHVVRYILLIVNRTVLLPPWLAAAATWGGVAVSVVAVFTVV 166 Query 181 TTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY 240 + ++L WL+ARRAAA+ H+G + RSA L GCL+P+ NLLWAP+YVIELA E R Sbjct 167 ASALMLTNWLIARRAAAYAHRGHQDPRSAASLRLGCLVPVANLLWAPVYVIELADTEARL 226 Query 241 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV 300 L R I++WW+VW+VS A+S+F+ ATS+ TD QGIA+NT + ++AYL AA+ RV Sbjct 227 RWLHRSILLWWVVWVVSTAVSIFSIATSFTTDPQGIADNTVVTIVAYLFGLAALVLVQRV 286 Query 301 FEGFEQKPVERPAHRWVVVN--TDGR---SAPASSVAVELDGQEPAA 342 F+GFEQ+PV RP+HRWVVV DG + PA AVE DGQ PAA Sbjct 287 FDGFEQQPVSRPSHRWVVVGAPQDGEVDDTQPAR--AVETDGQNPAA 331 >gi|315446533|ref|YP_004079412.1| hypothetical protein Mspyr1_50480 [Mycobacterium sp. Spyr1] gi|315264836|gb|ADU01578.1| hypothetical protein Mspyr1_50480 [Mycobacterium sp. Spyr1] Length=331 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 181/347 (53%), Positives = 227/347 (66%), Gaps = 21/347 (6%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 +IQVCSQCGT WNVR+RQRVWCPRCRG LLAP PA+ + PA Sbjct 1 MIQVCSQCGTRWNVRDRQRVWCPRCRGTLLAPSGPAPAQGWDQRPA-------------- 46 Query 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP 120 R P G+RW+AVRPGA P PR R GPTPRY IPRWGL +H D + + GPS Sbjct 47 ARPPAGYRWVAVRPGAPPRPRRVRRELGPTPRYQSIPRWGLVEHFDAPAEHTAERTGPSA 106 Query 121 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG 180 AVR LLV++ A V VVRY+LL++NR LL +A+A+ W GV VS+ A+ Sbjct 107 NAVRALLLVTMAALGAAAFVHVVRYILLIVNRTVLLPPWLAAAATWGGVAVSVVAVFTVV 166 Query 181 TTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY 240 + ++L WL+ARRAAA+ H+G + RSA L GCL+P+ NLLWAP+YVIELA E R Sbjct 167 ASALMLTNWLIARRAAAYAHRGHQDPRSAASLRLGCLVPVANLLWAPVYVIELADTEARL 226 Query 241 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV 300 L R I++WW+VW+VS A+S+F+ ATS+ TD QGIA+NT + ++AYL AA+ RV Sbjct 227 RWLHRSILLWWVVWVVSTAVSIFSIATSFTTDPQGIADNTVVTIVAYLFGLAALVLVQRV 286 Query 301 FEGFEQKPVERPAHRWVVVN--TDGR---SAPASSVAVELDGQEPAA 342 F+GFEQ+PV RP+HRWVVV DG + PA AVE DGQ PAA Sbjct 287 FDGFEQQPVSRPSHRWVVVGAPQDGEVDDTQPAR--AVETDGQNPAA 331 >gi|126437984|ref|YP_001073675.1| hypothetical protein Mjls_5421 [Mycobacterium sp. JLS] gi|126237784|gb|ABO01185.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=342 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 182/347 (53%), Positives = 230/347 (67%), Gaps = 10/347 (2%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 +IQVCS+CGT WNVR+R+R CPRC+G L+AP A A W AR P A+ P Sbjct 1 MIQVCSRCGTRWNVRDRERHVCPRCQGALMAPAAVPTPGAEWS--ARQVRPGAAGA---P 55 Query 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQA-PVPASAKAGPS 119 PRLP G+RWIAVRPGA PPPR R GPTPRY IPRWGL +H D P A + GPS Sbjct 56 PRLPAGYRWIAVRPGAPPPPRARRRPLGPTPRYPTIPRWGLVEHFDTVDPSAAETRTGPS 115 Query 120 PAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAA 179 +AVRTTLL+++ V A V +RY+LL+INR LLN +VA A+ WL V +S+AA Sbjct 116 TSAVRTTLLITMGVLGAAAAVHALRYLLLLINRTVLLNPIVAGAATWLAVALSVAAAFLV 175 Query 180 GTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDR 239 +IVLL WL+ARR AA+ ++G + R A L GCL+P VNL +AP+YV+ELA VE R Sbjct 176 VGSIVLLTNWLIARRGAAYAYRGQSDPRDALRLRLGCLVPFVNLFFAPVYVLELAGVESR 235 Query 240 YTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAAR 299 + LR+PI+VWWI+W++S +S+ + ATS+ TD QGIA+NT + +AYL A A + A R Sbjct 236 TSTLRKPIIVWWILWVLSTVVSVSSIATSFTTDPQGIADNTMITTIAYLTALATLLVAYR 295 Query 300 VFEGFEQKPVERPAHRWVVVNTDGRSAP----ASSVAVELDGQEPAA 342 V GFEQ PV RP HRWV+V D + A S+ VE GQ PAA Sbjct 296 VVSGFEQAPVSRPVHRWVMVPDDAQDAQHPEGQSARPVESSGQNPAA 342 >gi|120406610|ref|YP_956439.1| hypothetical protein Mvan_5668 [Mycobacterium vanbaalenii PYR-1] gi|119959428|gb|ABM16433.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=339 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 182/344 (53%), Positives = 227/344 (66%), Gaps = 7/344 (2%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 +IQVCSQCGT WNVR+RQRVWCPRCRG LLAP W P+ + D R Sbjct 1 MIQVCSQCGTRWNVRDRQRVWCPRCRGTLLAPSGHAAGHG-WD----PRQASPQDAPRQG 55 Query 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP 120 RLP G+RW+AVRPGA P P R GPTPRY IPRWGL + D A+ + GPS Sbjct 56 ARLPSGYRWVAVRPGAPPRPPRRRRDLGPTPRYLSIPRWGLVERFDVPVEDAAQRKGPSV 115 Query 121 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAG 180 AV+ TL+ ++ V A V VVRYVLL++NR+ LLN +A A+ W GV VS+ A+ Sbjct 116 NAVQMTLVATMAVLGAAAFVHVVRYVLLIVNRSVLLNPWIAGAATWGGVAVSVVAVFLTV 175 Query 181 TTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRY 240 ++V+L WL+ARR+AAF HQG + RSA L GCL P VNL WAP+YV+ELA E R Sbjct 176 ASLVVLTNWLIARRSAAFAHQGHRDPRSAWVLRLGCLTPFVNLFWAPVYVMELADAEGRQ 235 Query 241 TRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV 300 L RPIVVWW+ W+ S ++ FAFATS+ DAQGIA+NT ++AYL AAAA+ +A RV Sbjct 236 RWLHRPIVVWWLFWVASTTVTTFAFATSFTADAQGIADNTVTTIVAYLFAAAALLSALRV 295 Query 301 FEGFEQKPVERPAHRWVVVNTD-GRSAPAS-SVAVELDGQEPAA 342 F GFE++PV+RP+ RWV V D G S A + AVE +G+ PAA Sbjct 296 FLGFERQPVQRPSRRWVTVRVDAGESDDAEPARAVESNGENPAA 339 >gi|296166973|ref|ZP_06849387.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897653|gb|EFG77245.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=249 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 156/249 (63%), Positives = 190/249 (77%), Gaps = 6/249 (2%) Query 96 IPRWGLTDHVDQAPVPASAKAGPSPAA--VRTTLLVSLLVFSIAVVVFVVRYVLLVINRN 153 +PRWGL D V+ A A P+P+A +RTTL VS+LV IA +V+VVRY+LLV+NRN Sbjct 2 MPRWGLADRVEHPVSAAGTPAHPAPSAPTIRTTLFVSVLVLGIAALVYVVRYLLLVVNRN 61 Query 154 TLLNSVVASASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELW 213 TLLN+ VA+ + WLG+L S+AAIAA T+ V+L+RWL+ARRAA F H GLPE RS+R LW Sbjct 62 TLLNNWVAAGADWLGILASVAAIAAVFTSGVMLIRWLIARRAAVFAHHGLPEPRSSRALW 121 Query 214 AGCLLPMVNLLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDA 273 AGC +P NLLWAP+YVIELA++E+ Y R+RR IV WWI W+ S +S+FA TS+ DA Sbjct 122 AGCSVPFANLLWAPVYVIELAILEEHYARIRRLIVRWWIAWVASYLVSVFAMFTSFARDA 181 Query 274 QGIANNTTMMVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAV 333 QGIANNT MV AYL AA VAAAA+VFEGFE+KPVERPAHRWVVV +DG P S V Sbjct 182 QGIANNTMTMVFAYLLAALTVAAAAQVFEGFERKPVERPAHRWVVV-SDG---PPPSAPV 237 Query 334 ELDGQEPAA 342 EL+GQE AA Sbjct 238 ELEGQEAAA 246 >gi|118466756|ref|YP_879478.1| hypothetical protein MAV_0184 [Mycobacterium avium 104] gi|118168043|gb|ABK68940.1| conserved hypothetical protein [Mycobacterium avium 104] Length=273 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 155/257 (61%), Positives = 190/257 (74%), Gaps = 2/257 (0%) Query 88 GPTPRYAGIPRWGLTDHVDQAPVPASAKA--GPSPAAVRTTLLVSLLVFSIAVVVFVVRY 145 GPTPRYA IPRWGL D V+ P A+A A GP VR+T V +LV IA +V+VVRY Sbjct 17 GPTPRYAVIPRWGLADRVEPPPAVAAASAHPGPPAQLVRSTSFVGVLVLGIAALVYVVRY 76 Query 146 VLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPE 205 +LLVINR+TLL S VA + WLGVL S+ A+ A + V L+RW++ARRAA F H GLP+ Sbjct 77 LLLVINRDTLLYSWVAIGADWLGVLASVGAVGAVIASGVALIRWMIARRAAVFAHHGLPD 136 Query 206 RRSARELWAGCLLPMVNLLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAF 265 RSAR L AGC++P+ NLLWAP++VIELAL+E+ Y RL+ PI+ WWI W+ S A+S+ A Sbjct 137 PRSARALGAGCVVPLANLLWAPVFVIELALLEEHYHRLKGPILQWWITWVCSYAVSVSAI 196 Query 266 ATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRS 325 ATS+VTDAQGIANNT +MV YL AAA +AAA R+FEGF++KPV RPAHRWV+V DG Sbjct 197 ATSFVTDAQGIANNTILMVFGYLFAAATLAAATRIFEGFQRKPVARPAHRWVMVPDDGPP 256 Query 326 APASSVAVELDGQEPAA 342 PA VE GQEPAA Sbjct 257 PPAPGAPVEFKGQEPAA 273 >gi|289441281|ref|ZP_06431025.1| transmembrane protein [Mycobacterium tuberculosis T46] gi|289414200|gb|EFD11440.1| transmembrane protein [Mycobacterium tuberculosis T46] Length=172 Score = 268 bits (685), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 159/165 (97%), Positives = 159/165 (97%), Gaps = 1/165 (0%) Query 179 AGTTIVLLVRWLVARRA-AAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVE 237 AGTTIVLLVRWL AAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVE Sbjct 8 AGTTIVLLVRWLGRPFGPAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVE 67 Query 238 DRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAA 297 DRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAA Sbjct 68 DRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAA 127 Query 298 ARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 ARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA Sbjct 128 ARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 172 >gi|240168320|ref|ZP_04746979.1| hypothetical protein MkanA1_03347 [Mycobacterium kansasii ATCC 12478] Length=220 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 147/219 (68%), Positives = 178/219 (82%), Gaps = 3/219 (1%) Query 127 LLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAGTTIVLL 186 L +++V IA +V+ VRYVLL++NR+ LLNS+VA A++WLGVL S+AA+ A V+L Sbjct 2 LFATIVVLGIAALVYSVRYVLLIVNRSLLLNSLVAGAALWLGVLASIAALVAMIGCFVVL 61 Query 187 VRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRYTRLRRP 246 +RWL+ARRAAAF H GLPE RS+R+LWAGCLLP+ N+ WAP+YVIELA+VED Y RLRRP Sbjct 62 IRWLIARRAAAFGHHGLPEHRSSRQLWAGCLLPLANVFWAPVYVIELAVVEDHYQRLRRP 121 Query 247 IVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFEGFEQ 306 IVVWWI W VSNA+S+FA ATS+ DAQGIANNT M V+AY AAAAVAAA RVFEGFE+ Sbjct 122 IVVWWITWAVSNAVSLFAIATSFAGDAQGIANNTVMTVVAYALAAAAVAAAGRVFEGFER 181 Query 307 KPVERPAHRWVVVNTD---GRSAPASSVAVELDGQEPAA 342 KPVERPAHRW+VV D + APA++ AVEL GQEPAA Sbjct 182 KPVERPAHRWLVVRPDGPPPQPAPAAAGAVELQGQEPAA 220 >gi|118469079|ref|YP_890637.1| transmembrane protein [Mycobacterium smegmatis str. MC2 155] gi|118170366|gb|ABK71262.1| probable conserved transmembrane protein [Mycobacterium smegmatis str. MC2 155] Length=385 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 150/328 (46%), Positives = 201/328 (62%), Gaps = 18/328 (5%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 +IQVCSQCGT WNVRERQR WCPRC G LLAP A E++W +P R +R P Sbjct 1 MIQVCSQCGTRWNVRERQRSWCPRCGGGLLAPSA---PESQWASPPR----QPQQPQRPP 53 Query 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKA---G 117 RL PG+RWIAVRPGA PP R R GPTPRY +PRWGL H D A +A G Sbjct 54 ARLAPGYRWIAVRPGAPPPSRPRRRPLGPTPRYLTVPRWGL--HQDFAVAEERQQAQRTG 111 Query 118 PSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIA 177 P+ VR ++++++ + A +VRY+LL++NR LL+ V+A V LG+L SL +A Sbjct 112 PAAHTVRLVIVLAMIALAGAAFAHIVRYILLLVNRTVLLHPVIAWGGVLLGMLASLLVLA 171 Query 178 AAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVE 237 T+V+L+ WLVARR A+ +G + RS ELW L P+VNL AP++V+ELA + Sbjct 172 IMTITVVMLISWLVARRREAYSQRGQEDPRSPLELWICALAPVVNLFMAPVFVLELARAD 231 Query 238 DRYTRLRRPIVVWWIVWIVSNAISMFA-----FATSWVTDAQGIANNTTMMVLAYLCAAA 292 +R T LRRPI VWWIVW++S ++ ++ + T + Q IA+NT +++ YL Sbjct 232 NRMTLLRRPIAVWWIVWVLSAIVATWSIVSTVYVTFFNNTPQNIADNTVTVIIGYLLGLT 291 Query 293 AVAAAARVFEGFEQKPVE-RPAHRWVVV 319 + RVF+GFE + R RWVVV Sbjct 292 TLLLTYRVFQGFEATEAQGRSVRRWVVV 319 >gi|169627227|ref|YP_001700876.1| hypothetical protein MAB_0122 [Mycobacterium abscessus ATCC 19977] gi|169239194|emb|CAM60222.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=387 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 146/382 (39%), Positives = 195/382 (52%), Gaps = 45/382 (11%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPL-----------------ADMPAEARWR 43 +IQVCS+CGT WNVRE++R WCPRCRG LL P A PA W Sbjct 1 MIQVCSRCGTQWNVREQRRYWCPRCRGTLLEPGMTAPPRPAASMSRPPVGAPAPAGKYWV 60 Query 44 TPARPQVPTASDTRR---TPPRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWG 100 P + Q P A+ R P RLP G+RWIAVRPG+ P P R GPTPRYA IPRWG Sbjct 61 PPTQ-QGPVATPAGRPQARPTRLPAGYRWIAVRPGSPPAPARRRRPLGPTPRYAYIPRWG 119 Query 101 LTDHVDQAPVPASAKAGPSPAAVRT-----TLLVSLLVFSIAVVVFVVRYVLLVINRNTL 155 L DH++ S++ G + AV + LL +++ +I +RY L+V NR L Sbjct 120 LVDHIEPT---GSSRQGIAGGAVPSRILDRLLLATIITLAITSCTHFLRYALMVYNRGAL 176 Query 156 LNSVVASASVWLGVLVSLA-AIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWA 214 + VASAS L VL+S+A A A T L W++ARRA + G + RS E+ Sbjct 177 IPRFVASASNGL-VLISVALAFAVMAATAWFLTDWMIARRAETYRDLGFDDPRSPWEIRV 235 Query 215 GCLLPMVNLLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQ 274 CLLP+ N++ PL ++ELA +E+R+ R R I+ W ++W + +++ + Q Sbjct 236 LCLLPIANIVGIPLLLLELAKIENRWYRQYRNIMWWTVLWAATWLLALVTWVVRDSVTVQ 295 Query 275 GIANNTTMMVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAP------- 327 GIA+N + Y AA A RV+EGF A RW+ V + P Sbjct 296 GIADNALFTAIDYAVAAVAAWRLRRVYEGFTAPEGHHRAVRWLAVESPQGPVPLDADRPD 355 Query 328 -------ASSVAVELDGQEPAA 342 S AVE G EPAA Sbjct 356 VPPTRDANSGAAVEPVGTEPAA 377 >gi|333992796|ref|YP_004525410.1| transmembrane protein [Mycobacterium sp. JDM601] gi|333488764|gb|AEF38156.1| transmembrane protein [Mycobacterium sp. JDM601] Length=350 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 170/355 (48%), Positives = 213/355 (60%), Gaps = 31/355 (8%) Query 14 VRERQRVWCPRCRGMLLAPLAD-MPAEARWRTPARPQVPTASDT--RRTPPRLPPGFRWI 70 +R+R+R WCPRC G L APL AE +W P P P+ +PPRL PG+RWI Sbjct 1 MRDRRRAWCPRCNGALWAPLTPAQEAELQWAQPG-PPAPSEQSVAPSESPPRLGPGYRWI 59 Query 71 AVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASA------KAGPSPAAVR 124 AVRPG PP R R GPTPRY +PRW L AP P A +A P ++ Sbjct 60 AVRPGPPPPQRRRRRPLGPTPRYTVMPRWTLMG----APSPTVAQPKPQGRAAPPTRSLE 115 Query 125 TTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAAGTTIV 184 L ++ IA +V + YVL+++NR LL+ ++A +VWLG L LAAIAA + Sbjct 116 KALGGAIAALGIAALVHALIYVLMIVNRTRLLHPLIAEGAVWLGRLAGLAAIAAVVHCAL 175 Query 185 LLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRYTRLR 244 +L RWL+ARR AAF LPE R A LW GCL+P+VNL WAP+YV+ELA EDR RLR Sbjct 176 VLTRWLLARREAAFARLQLPESRPAWALWTGCLVPLVNLAWAPVYVLELAGREDRLARLR 235 Query 245 RPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFEGF 304 +P+V+WW+VW V+ A ++FA ATSW DAQGIA+N V+AYL AAV AAARV EGF Sbjct 236 KPVVIWWVVWAVATAAALFATATSWADDAQGIADNMVATVVAYLLGLAAVVAAARVVEGF 295 Query 305 EQKPVERPAHRWVVVNTDGRSAPAS-----------------SVAVELDGQEPAA 342 EQ+ + RPAH WVVV AP+ +VAV G+EPAA Sbjct 296 EQRSMGRPAHHWVVVPDGQDPAPSGPAAQGGPPAEPEAAAAPTVAVGSGGREPAA 350 >gi|254822002|ref|ZP_05227003.1| hypothetical protein MintA_18862 [Mycobacterium intracellulare ATCC 13950] Length=180 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/180 (66%), Positives = 143/180 (80%), Gaps = 0/180 (0%) Query 163 ASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVN 222 A+ WLGVL S+ A AA + VLL+RWL+ARRAAAF H GLPE RS R LWAGC++P+ N Sbjct 1 AADWLGVLASVGAGAAVIASGVLLIRWLIARRAAAFAHHGLPEPRSPRALWAGCVVPLAN 60 Query 223 LLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTM 282 LLWAP+YVIELAL+ED + RLR P++ WWI W+ S A+S+ A TS+ TDAQGIANNT + Sbjct 61 LLWAPVYVIELALLEDHWVRLRGPVLQWWIAWVCSYAVSIAAIVTSFATDAQGIANNTVL 120 Query 283 MVLAYLCAAAAVAAAARVFEGFEQKPVERPAHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 MV+AYL AAA +AAA R+FEGF +KPV RPAHRWV+V DG APAS+ VEL+GQEPAA Sbjct 121 MVVAYLLAAATLAAATRIFEGFHRKPVARPAHRWVMVPDDGAPAPASAGPVELEGQEPAA 180 >gi|289764029|ref|ZP_06523407.1| predicted protein [Mycobacterium tuberculosis GM 1503] gi|289711535|gb|EFD75551.1| predicted protein [Mycobacterium tuberculosis GM 1503] Length=90 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 89/90 (99%), Positives = 90/90 (100%), Gaps = 0/90 (0%) Query 253 VWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFEGFEQKPVERP 312 +WIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFEGFEQKPVERP Sbjct 1 MWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFEGFEQKPVERP 60 Query 313 AHRWVVVNTDGRSAPASSVAVELDGQEPAA 342 AHRWVVVNTDGRSAPASSVAVELDGQEPAA Sbjct 61 AHRWVVVNTDGRSAPASSVAVELDGQEPAA 90 >gi|54022088|ref|YP_116330.1| hypothetical protein nfa1240 [Nocardia farcinica IFM 10152] gi|54013596|dbj|BAD54966.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=363 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 103/325 (32%), Positives = 150/325 (47%), Gaps = 33/325 (10%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPL-ADMPAEARWRTPARPQVPTASDTRRT 59 V+Q C++CG W V+ WCPRCRG+LL+P D P + R Sbjct 4 VVQPCARCGARWAVQSTPLHWCPRCRGVLLSPGPIDAPPQRR------------------ 45 Query 60 PPRLPPGFRWIAVRPG--AAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAG 117 +RW+A +P P GP PTPRY IPRWGL D AP A ++ Sbjct 46 ------NYRWVARKPDHRVRKPGGTGPAAATPTPRYREIPRWGLHDLPPPAPAAARSRLD 99 Query 118 PSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIA 177 + L+++ +F +A + V+RY++L+ NR L++ V + S LAA+ Sbjct 100 DFASNTERLLILTAWLFGLAALAEVLRYLILLRNRTRLIHPFVLTLSDVFVWATGLAAVV 159 Query 178 AAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVE 237 A T V L WL+ R A + G + R+ + GCL+P+VNLLW +Y+ ELA Sbjct 160 FALGTAVALAGWLIRTRRATYASTGHADPRAPYAILLGCLVPVVNLLWPGVYLAELATAT 219 Query 238 DRYTRLRRPIVVWWIVWIVSNAISMFAF----ATSWVTDAQGIANNTTMMVLAYLCAAAA 293 R R + +WW W+ + + A A S A G+A +A A Sbjct 220 GD-PRAERAVRIWWCAWVGNGVLVAAALLWRTADSLQAQADGVAFTALTDAVAAA-VAVL 277 Query 294 VAAAARVFEGFEQKPVERPAHRWVV 318 A R+F+G + + R A RWVV Sbjct 278 TLAVVRLFDGRDLRGRARMARRWVV 302 >gi|111021006|ref|YP_703978.1| hypothetical protein RHA1_ro04023 [Rhodococcus jostii RHA1] gi|110820536|gb|ABG95820.1| possible membrane protein [Rhodococcus jostii RHA1] Length=327 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 99/336 (30%), Positives = 145/336 (44%), Gaps = 54/336 (16%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 V+QVC++C W V WCPRC G+LLAP+ RT Sbjct 4 VVQVCARCAARWPVLGSPAQWCPRCHGVLLAPV------------------------RTD 39 Query 61 PRLPP---GFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAG 117 PP GFRWIA P P PTP Y IPRWGL DHV+ A A+ + Sbjct 40 QHQPPASRGFRWIARSPLRRSGLAAEPPAPSPTPHYTEIPRWGLHDHVETA---ATRRDW 96 Query 118 PSPAAVRTTLLVSLL--VFSIAVVVFVVRYVLLVINRNTLLNSV---VASASVWLGVLVS 172 P A + ++L +++ AV+ + RY +L+ NR L++ V+ +V+LG Sbjct 97 PELLAGKAAFFLTLTAGLYAFAVIAELGRYAVLLRNRTRLIDPTLLAVSDIAVFLG---- 152 Query 173 LAAIAAAGTTIVLL-----VRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAP 227 A G + LL V WL+ R F + R+ E+ GC +P +NL+ Sbjct 153 ----QAGGMLLALLSGIGGVCWLLRMRRRTFARAKTSDPRTPTEVIVGCAVPGLNLVMPG 208 Query 228 LYVIELALVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAY 287 +Y++E+ + R L R WW +WI + +F + Q +A+ + Sbjct 209 VYLLEVIRRDPRAVLLVR---AWWSLWIFGAVLVVFNWFWRSRPGLQAMADGVLLAAFTA 265 Query 288 LCAAAAVAAA---ARVFEGFEQKPVERPAHRWVVVN 320 L A+A A R EG K + P RWV+ Sbjct 266 LVASATAVLALMVLRRLEGRTLKGAKEPVTRWVIAT 301 >gi|226303659|ref|YP_002763617.1| hypothetical protein RER_01700 [Rhodococcus erythropolis PR4] gi|226182774|dbj|BAH30878.1| hypothetical membrane protein [Rhodococcus erythropolis PR4] Length=319 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 89/265 (34%), Positives = 129/265 (49%), Gaps = 40/265 (15%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 V+QVC++C W V WCPRC G+LL +PT ++ + P Sbjct 3 VVQVCARCAARWPVVGGPTQWCPRCSGVLL-------------------IPTRTEIYQPP 43 Query 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRG-PTPRYAGIPRWGLTDHVDQAPVPASAKAGPS 119 R GFRWIA P P R TPRY +P+WGL D VD +PVP S +A Sbjct 44 NRR--GFRWIARSPSDPRGVGDAPVRRSLTTPRYDAVPQWGLQDIVDTSPVPPS-RADRM 100 Query 120 PAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNS---VVASASVWL----GVLVS 172 V L ++ +++ +AV + RY +LV NR TL+ V+ A+V+ G+L+S Sbjct 101 ADRVGPLLTLATILYGLAVFAELGRYAILVRNRTTLIPQWLLTVSDAAVYFTQLGGLLIS 160 Query 173 LAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIE 232 + A A V WL+ RR F G + R+A E+ GC +P++NL+ +Y+ E Sbjct 161 VFAAVAG-------VCWLLRRRHEHFAGAGESDPRTASEVVVGCAVPILNLVMPAVYLFE 213 Query 233 LALVEDRYTRLRRPIVVWWIVWIVS 257 L + R T L + +WW W S Sbjct 214 LVRRDPRGTLL---VKIWWGFWGFS 235 >gi|325672799|ref|ZP_08152494.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Rhodococcus equi ATCC 33707] gi|325556393|gb|EGD26060.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Rhodococcus equi ATCC 33707] Length=309 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 89/261 (35%), Positives = 123/261 (48%), Gaps = 26/261 (9%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 V+QVC++C + W V WCPRC+G+LL+P+ DTRR Sbjct 3 VVQVCARCASQWPVAGAPAQWCPRCQGVLLSPV---------------------DTRRPA 41 Query 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHV-DQAPVPASAKAGPS 119 P FRW+A P R GPTPRY IPRWGL D D+ PA + Sbjct 42 PVAGRNFRWVARSPYPPEVRRRTGTSPGPTPRYRQIPRWGLLDPPPDEREAPARRTDAVA 101 Query 120 PAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLAAIAAA 179 A T L + LVF +A + RY LLV NR L++ + + S + L+ A Sbjct 102 DLAP-TLLACTALVFGLATLAEAFRYGLLVFNRVRLVDPLTLAISDAMVWSTQLSGPLVA 160 Query 180 GTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDR 239 V + L RA F +GL + R RE+ G L+P +NL+ +Y+ E+A +DR Sbjct 161 VAAAVAVACRLHVERARVFADRGLTDPRPLREILVGVLVPGLNLVMPAVYLREIA-GDDR 219 Query 240 YTRLRRPIVVWWIVWIVSNAI 260 RLRR I +WW W+ + Sbjct 220 --RLRRAIRLWWTAWVTGGVL 238 >gi|312137664|ref|YP_004005000.1| integral membrane protein [Rhodococcus equi 103S] gi|311887003|emb|CBH46312.1| putative integral membrane protein [Rhodococcus equi 103S] Length=309 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 91/264 (35%), Positives = 125/264 (48%), Gaps = 32/264 (12%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 V+QVC++C + W V WCPRC+G+LL+P+ DTRR Sbjct 3 VVQVCARCASQWPVAGAPAQWCPRCQGVLLSPV---------------------DTRRPA 41 Query 61 PRLPPGFRWIAVRPGAAPPPRHGPRLRGPTPRYAGIPRWGLTDHV-DQAPVPASAKAGPS 119 P FRW+A P R GPTPRY IPRWGL D D+ PA + Sbjct 42 PVAGRNFRWVARSPYPPEVRRRTGTSPGPTPRYRQIPRWGLLDPPPDEREAPARRTDAVA 101 Query 120 PAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSV---VASASVWLGVLVSLAAI 176 A T L + LVF +A + RY LLV NR L++ + ++ A VW L+ Sbjct 102 DLAP-TLLACTALVFGLATLAEAFRYGLLVFNRVRLVDPLTLAISDAMVW---STQLSGP 157 Query 177 AAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALV 236 A V + L RA F +GL + R RE+ G L+P +NL+ +Y+ E+A Sbjct 158 LVAVAAAVAVACRLHVERARVFADRGLTDPRPLREILVGVLVPGLNLVMPAVYLREIA-G 216 Query 237 EDRYTRLRRPIVVWWIVWIVSNAI 260 +DR RLRR I +WW W+ + Sbjct 217 DDR--RLRRAIRLWWTAWVTGGVL 238 >gi|226363311|ref|YP_002781093.1| hypothetical protein ROP_39010 [Rhodococcus opacus B4] gi|226241800|dbj|BAH52148.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=326 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 94/334 (29%), Positives = 147/334 (45%), Gaps = 40/334 (11%) Query 1 VIQVCSQCGTGWNVRERQRVWCPRCRGMLLAPLADMPAEARWRTPARPQVPTASDTRRTP 60 V+QVC++C W V WCPRC G+LLAP+ SD + P Sbjct 4 VVQVCARCAARWPVLGSPAQWCPRCHGVLLAPV-------------------RSDQHQPP 44 Query 61 PRLPPGFRWIAVRPGAAPPPRHG----PRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKA 116 GFRWIA RP P R G P + PTP Y IPRWGL DHV+ ++ + Sbjct 45 ANR--GFRWIA-RP---PLQRSGLAAEPSPQSPTPHYTEIPRWGLHDHVEAR---SARRD 95 Query 117 GPSPAAVRTTLLVSLL--VFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLA 174 P A + L +++ +++ V+ + RY +L+ NR L++ V + S L Sbjct 96 WPELLAGKAALFLTVTAGLYAFGVLAELGRYAVLLRNRTRLIDPTVLAVSDIAVFLGQAG 155 Query 175 AIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELA 234 + A + + V WL+ R F + R+ E+ GC +P +NL+ ++++E+ Sbjct 156 GMLFALLSGIAGVCWLLRMRRRTFARAKKSDPRTPTEVVVGCAVPGLNLVMPGVFLLEVI 215 Query 235 LVEDRYTRLRRPIVVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAV 294 + R L R WW +W+ + +F + Q +A+ + L A+A Sbjct 216 RRDPRAVLLVR---AWWSLWVFGAVLVVFNWFWRSRPGLQAMADGVLLAAFTALVASATA 272 Query 295 AAA---ARVFEGFEQKPVERPAHRWVVVNTDGRS 325 A R EG K + P RWV+ R+ Sbjct 273 LLALMVLRRLEGRTLKGAKEPVTRWVIATDPPRN 306 >gi|296137882|ref|YP_003645125.1| hypothetical protein Tpau_0132 [Tsukamurella paurometabola DSM 20162] gi|296026016|gb|ADG76786.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=278 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 86/272 (32%), Positives = 124/272 (46%), Gaps = 18/272 (6%) Query 64 PPG--FRWIAVRP-GAAPPPRHGPRLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSP 120 PPG RW+A RP P PR P PTPRY +PRWGL AP +A + Sbjct 9 PPGRRIRWLARRPPETLPEPRRAPSGEQPTPRYDDVPRWGLRQEFAPAPTREEGRAEAAS 68 Query 121 AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVA-SASVWLGVLVSLAAIAAA 179 + + + L + + +A + Y+LLVINR ++ +A A V + L LA IA Sbjct 69 SLLYSVLQGATGILILAGLAEAGAYLLLVINRARTVSKYLAWGADVSVFALGWLAVIALI 128 Query 180 GTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDR 239 G V RWL A RAAA+ G + R +LW CL+P+VNL+ AP+ +EL +DR Sbjct 129 GV-YVAFARWLHAARAAAYEGLGTLDPRPTWQLWVYCLVPVVNLVAAPVLALELVRAQDR 187 Query 240 YTRLRRP--------IVVWWIVWIVSNAISMFAFATSWVTDA-QGIANNTTMMVLAYLCA 290 R P I WW W + +++ A + + Q A+ + Y+ Sbjct 188 AAG-REPSTDGRTEFIRRWWAGWAALSIVTVGCVAYAQASGGLQHRADAVLYTAITYVLG 246 Query 291 AAAVAAAARVFEGFEQKP---VERPAHRWVVV 319 AA + R+ + P E RW+ V Sbjct 247 AAFLVLTLRLVRMIDAGPGSEHEVEEGRWLAV 278 >gi|262200201|ref|YP_003271409.1| hypothetical protein Gbro_0168 [Gordonia bronchialis DSM 43247] gi|262083548|gb|ACY19516.1| hypothetical protein Gbro_0168 [Gordonia bronchialis DSM 43247] Length=296 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 94/299 (32%), Positives = 143/299 (48%), Gaps = 30/299 (10%) Query 37 PAEARWRTPARPQVPTASDTRRTPPRLPPGFRWIAVRPGAAPPPRHGPRLRGP--TPRYA 94 P R+ P RP + RRT P RWIA RP PPR R GP PRY Sbjct 11 PPPLRYANPQRP-----APQRRT--YRSPAIRWIARRPPETIPPRRPARPSGPRLIPRYV 63 Query 95 GIPRWGLTDHVDQAPVPASAKAGPSPAAVRTTLLVSLL----VFSIAVVVFVVRYVLLVI 150 +P WGL D P+ +AG A ++ L ++LL + +++ +V ++RY+LL + Sbjct 64 YLPTWGLRDQ----PI-TELRAGDPVAVAQSRLHMALLATGGILAVSGLVHILRYILLTM 118 Query 151 NRNTLLNSVVASASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSAR 210 NR+ + + +A S L V A+ A VL VRW++ R ++ + R R Sbjct 119 NRSRPIPTWLADLSGALVVTAGALAVVAFVVATVLFVRWVIEVRTESYAMADRLDPRRRR 178 Query 211 ELWAGCLLPMVNLLWAPLYVIELALVEDRYTRLRRPIVV--WWIVWIVSNAISM---FAF 265 L +P+VN++ PL V E A+V R + W+ W + N +++ A Sbjct 179 WLIPLAAIPLVNIIGGPLLVYEAAMVRTDVDRDVVRRRINRLWVAWAIVNGVAIVTVVAR 238 Query 266 ATSWVTDA-QGIANNTTMMVL-AYLCAAAAVAAAA---RVFEGFEQKPVERPAHRWVVV 319 +W + + Q AN TM+++ A + AA A+ AA+ R+F G E V P RWV V Sbjct 239 LYAWQSGSIQSGANALTMVIISAVVSAAFAIWAASRLPRLFAGPETATV--PDRRWVAV 295 >gi|229492821|ref|ZP_04386619.1| putative membrane protein [Rhodococcus erythropolis SK121] gi|229320261|gb|EEN86084.1| putative membrane protein [Rhodococcus erythropolis SK121] Length=260 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/176 (36%), Positives = 93/176 (53%), Gaps = 20/176 (11%) Query 90 TPRYAGIPRWGLTDHVDQAPVPASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLV 149 TPRY +P+WGL D VD +PVP S +A V L ++ +++ +AV + RY +LV Sbjct 7 TPRYDAVPQWGLQDVVDTSPVPPS-RADRMADRVGPLLTLATILYGLAVFAELGRYAILV 65 Query 150 INRNTLLNS---VVASASVWL----GVLVS-LAAIAAAGTTIVLLVRWLVARRAAAFMHQ 201 NR L+ V+ A+V+ G+L+S AAIAA V WL+ RR F Sbjct 66 RNRTRLIPQPLLTVSDAAVYFTQLGGLLISVFAAIAA--------VCWLLRRRREHFAGV 117 Query 202 GLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRYTRLRRPIVVWWIVWIVS 257 + R+A E+ GC +P++NL+ +Y+ EL + R T L + +WW W S Sbjct 118 RESDPRTASEVVVGCAVPILNLVMPAVYLFELVRRDPRGTLL---VKIWWGFWGFS 170 >gi|326384351|ref|ZP_08206032.1| hypothetical protein SCNU_15509 [Gordonia neofelifaecis NRRL B-59395] gi|326196949|gb|EGD54142.1| hypothetical protein SCNU_15509 [Gordonia neofelifaecis NRRL B-59395] Length=289 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 80/265 (31%), Positives = 125/265 (48%), Gaps = 31/265 (11%) Query 50 VPTASDTRRTPPR---LPPGFRWIAVRPGAAPPPRHGPRLRG--PTPRYAGIPRWGLTDH 104 VP TPPR +P RW+A RP A P R+ PTP Y IPRWGL+D Sbjct 10 VPAQQQRNATPPRPQRVP--LRWVADRPVEARPTSAPVRVVEARPTPFYRFIPRWGLSD- 66 Query 105 VDQAPVPASAKAG---PSPAAVRT---TLLVSLLVFSIAVVVFVVRYVLLVINRNT---- 154 P P +A+ G +P T TL ++ + + A V ++RY++ V+NR+T Sbjct 67 ---VP-PVTAQEGLERETPDVSETLSRTLRLTSYMLAAAAVAHLIRYLIAVVNRSTPIPM 122 Query 155 LLNSVVASASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWA 214 L+ + +A + GV A A ++V VRWL+ RA + + R R Sbjct 123 WLDLLSGAAVLVFGVF----AFVAMLVSLVAFVRWLIPTRAEMYRAADRRDPRPTRNRIL 178 Query 215 GCLLPMVNLLWAPLYVIELALVEDR----YTRLRRPIVVWWIVWIVSNAISMFAFATSWV 270 LP+VN++ APL + E AL DR R++R + W +V + + + A +W Sbjct 179 LAALPLVNVVGAPLLLTEAALSGDRAESAVDRIKRLGLAWALVNVAALVAVGYRIA-AWT 237 Query 271 TDAQGIANNTTMMVLAYLCAAAAVA 295 +D+ ++ + +V L +A A Sbjct 238 SDSVQVSADALAVVTFSLAVSAVFA 262 >gi|333917754|ref|YP_004491335.1| hypothetical protein AS9A_0075 [Amycolicicoccus subflavus DQS3-9A1] gi|333479975|gb|AEF38535.1| hypothetical protein AS9A_0075 [Amycolicicoccus subflavus DQS3-9A1] Length=288 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 82/277 (30%), Positives = 124/277 (45%), Gaps = 26/277 (9%) Query 62 RLPPGFRWIAVRPGAAPPPRHGPRLRG-------PTPRYAGIPRWGLTDHVDQAPVPASA 114 R P RW+A+ P P RG PTPR A +P W L + QA +P Sbjct 14 RRPLSHRWLALAP---PAVTESAESRGRRPAPVTPTPRAASVPGWSLYEKPQQA-LPKQP 69 Query 115 KAGPSPAAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLNSVVASASVWLGVLVSLA 174 + + L+V+ ++ A + V R+ LL+ NR+ L+ + +A +S +L + +LA Sbjct 70 RTRIWGGYAVSFLVVAAGLYLAAGLAEVFRFGLLLYNRSRLVPAWLAFSSDFLVAVTALA 129 Query 175 AIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIEL- 233 AI + V WLV R F L + RS RE GCLLP+V L + + E+ Sbjct 130 AIICSLLAAVSAACWLVDFRREWFARLELRDTRSVREQLLGCLLPVVTLWYPGTLLSEML 189 Query 234 --ALVEDRYTRLRRPIV----VWWIVWI---VSNAISMFAFATSWVTDAQGIANNTTMMV 284 A D + + R ++ VWW +W+ + +S+ T+ AQ AN Sbjct 190 SSARARDHFGQQARSVLTRVRVWWGMWVATWICQGLSLLWRETADTLQAQ--ANGVEFAA 247 Query 285 LAYLCAAA-AVAAAARVFEGFEQKPVERP--AHRWVV 318 L + AAA AV + E + RP + RWVV Sbjct 248 LTHFLAAAFAVMTLVVMRELLHLRDRTRPRSSKRWVV 284 >gi|343926281|ref|ZP_08765790.1| hypothetical protein GOALK_056_01490 [Gordonia alkanivorans NBRC 16433] gi|343763910|dbj|GAA12716.1| hypothetical protein GOALK_056_01490 [Gordonia alkanivorans NBRC 16433] Length=294 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 74/206 (36%), Positives = 100/206 (49%), Gaps = 31/206 (15%) Query 45 PARPQVPTASDTRRTPPRLPP--------GFRWIAVRPGAAPPPRHGPRL-RGP--TPRY 93 PARP PPR P RW+A RP A P R GP RGP PRY Sbjct 4 PARPAT-------HAPPRTAPTGRLYRGRNVRWVARRPPEAIPSRRGPSGPRGPRLIPRY 56 Query 94 AGIPRWGLTDHVDQAPVPASAKAGPSPAAVRTTLLVSLLVFSIAV----VVFVVRYVLLV 149 IP WGL D PV A A A+ R LL +L+V A+ V+ ++RY+LL Sbjct 57 VYIPTWGLRDE----PVTADATHDRIDAS-RARLLFALVVAGTALAASAVIHLLRYILLA 111 Query 150 INRNTLLNSVVASASVWLGVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSA 209 +NR L + + S W+ V V +AA+ A + +RW++ RA A+ L + R Sbjct 112 VNRTQPLPNPLIVVSDWMIVFVGVAALLAYVWATLAFIRWVMDLRAGAYEEARLLDPR-- 169 Query 210 RELW--AGCLLPMVNLLWAPLYVIEL 233 R LW +P+VNL+ APL + E+ Sbjct 170 RPLWVGVLVGVPLVNLVGAPLVLGEV 195 >gi|300782073|ref|YP_003762364.1| hypothetical protein AMED_0138 [Amycolatopsis mediterranei U32] gi|299791587|gb|ADJ41962.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340523430|gb|AEK38635.1| hypothetical protein RAM_00700 [Amycolatopsis mediterranei S699] Length=345 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 81/268 (31%), Positives = 120/268 (45%), Gaps = 37/268 (13%) Query 65 PGFRWIAVRPGAAPPPRHGPRLR--------GPTPRYAGIPRWGLTDHVDQAP--VPASA 114 P RW+A PPP PR R GP P Y PRWG + V + P VP +A Sbjct 51 PKLRWVAT-----PPPGAWPRRRVVAPEPYLGP-PSYPVPPRWGFPNLVWRRPTSVPGTA 104 Query 115 KAGPSP--------AAVRTTLLVSLLVFSIAVVVFVVRYVLLVINRNTLLN-SVVASASV 165 P +V L + A + RYVLLV R + L+ SVVA + Sbjct 105 SDEVRPIDRVPVLSRSVVVVLFAFAALAVAAASAEIWRYVLLVQGRESALSRSVVAFSDG 164 Query 166 WL---GVLVSLAAIAAAGTTIVLLVRWLVARRAAAFMHQGLPERRSARELWAGCLLPMVN 222 ++ G+L S+ A+ AG ++ L LVAR+AAA + P R ++ G L+P+ N Sbjct 165 FVLTAGLLASILALLPAGLSLWWL---LVARQAAADVSGDDPP-RPVWQVLVGVLVPVAN 220 Query 223 LLWAPLYVIELALVEDRYTRLRRP-----IVVWWIVWIVSNAISMFAFATSWVTDAQGIA 277 L A V EL +R RP ++VWW W+++ + + + D Q +A Sbjct 221 LPLALSVVGELEHAVLGRSRDVRPKPSRRVLVWWGAWLLNWVLLGVSICWRFRDDVQSMA 280 Query 278 NNTTMMVLAYLCAAAAVAAAARVFEGFE 305 ++ ++ + L AAA A V + F Sbjct 281 DSVVLVAVTDLSAAALAVMTALVVQRFS 308 >gi|325000658|ref|ZP_08121770.1| hypothetical protein PseP1_17902 [Pseudonocardia sp. P1] Length=302 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 75/233 (33%), Positives = 102/233 (44%), Gaps = 23/233 (9%) Query 85 RLRGPTPRYAGIPRWGLTDHVDQAPVPASAKAGPSPAAVRTTLLVSLLVFSIAVVVFVV- 143 R GP PRY +P WGL + PV S GP+ R L LV + V+V V Sbjct 20 RYAGP-PRYRSVPGWGLPVGPWRRPV--SPGDGPAQPIDRARWLAGQLVPVLWVLVVVSA 76 Query 144 --------RYVLLVINRNTLLNSVV---ASASVWLGVLVSLAAIAAAGTTIVLLVRWLVA 192 RY LL+++R+ L+ V + A VW G S+AA+ AAG VL V W + Sbjct 77 IAAVAEAWRYGLLLVSRSDALSPVAVGWSDAMVWFGGWSSVAAVIAAG---VLTVSWSLW 133 Query 193 RRAAAFMHQGLPERRSARELWAGCLLPMVNL-----LWAPLYVIELALVEDRYTRLRRPI 247 AA G RS R + AG ++P NL L A L L R R + Sbjct 134 AYRAAADRSGTRAWRSRRWIVAGWVVPGWNLAGPGSLLAETEHAALGLEPQRRPSPSREL 193 Query 248 VVWWIVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARV 300 +VWW +WI S ++ A + + Q +A+ + V A AA RV Sbjct 194 LVWWGLWIASLLLATVALVWRFRSGTQALADGVVLHVWANAVAAVTAYRTIRV 246 >gi|302531497|ref|ZP_07283839.1| predicted protein [Streptomyces sp. AA4] gi|302440392|gb|EFL12208.1| predicted protein [Streptomyces sp. AA4] Length=499 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/235 (28%), Positives = 101/235 (43%), Gaps = 23/235 (9%) Query 91 PRYAGIPRWGLTDHVDQAP--VPASAKAGPSPAAVRTTLLVSL--LVFSIAVVVFVV--- 143 P Y PRWG + + P VP +A P L SL ++++ AV+ + Sbjct 233 PSYPVPPRWGFPNLTWRRPTNVPGTASGEIRPIDRIPVLARSLATILWTFAVLAVIAAGA 292 Query 144 ---RYVLLVINRNTLLNSVVASAS----VWLGVLVSLAAIAAAGTTIVLLVRWLVARRAA 196 RY LLV +R++ LNS V S + G+L ++ ++ AG L V WL+ R A Sbjct 293 EIWRYALLVESRDSALNSGVVGFSDAFVMLAGLLTTIFSLLPAG----LSVWWLLVARQA 348 Query 197 AFMHQGLPERRSARELWAGCLLPMVNLLWAPLYVIELALVEDRYTRLRRP-----IVVWW 251 A G R ++ G L+P+VNL A V EL R +R +RP ++ WW Sbjct 349 AADEAGEAPPRPVWQVLVGVLVPIVNLALALSVVSELEHAVLRRSRDKRPKPSRLVLGWW 408 Query 252 IVWIVSNAISMFAFATSWVTDAQGIANNTTMMVLAYLCAAAAVAAAARVFEGFEQ 306 W+ + + + Q +A++ ++ L AA A V F Sbjct 409 GAWVANWILLIVTIIWRIRPGVQAMADSVLLVAFTDLAAATLAIVTALVIRRFSH 463 Lambda K H 0.325 0.135 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 623720423336 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40