BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3849 Length=132 Score E Sequences producing significant alignments: (Bits) Value gi|308369258|ref|ZP_07417080.2| hypothetical protein TMBG_02391 ... 275 2e-72 gi|15610985|ref|NP_218366.1| hypothetical protein Rv3849 [Mycoba... 274 3e-72 gi|15843480|ref|NP_338517.1| hypothetical protein MT3964 [Mycoba... 272 1e-71 gi|342351034|pdb|3R1F|A Chain A, Crystal Structure Of A Key Regu... 264 3e-69 gi|240168325|ref|ZP_04746984.1| hypothetical protein MkanA1_0337... 244 3e-63 gi|118620035|ref|YP_908367.1| hypothetical protein MUL_5021 [Myc... 240 7e-62 gi|15826914|ref|NP_301177.1| hypothetical protein ML0069 [Mycoba... 232 1e-59 gi|342860101|ref|ZP_08716753.1| hypothetical protein MCOL_14520 ... 230 4e-59 gi|296166978|ref|ZP_06849392.1| conserved hypothetical protein [... 229 7e-59 gi|41406283|ref|NP_959119.1| hypothetical protein MAP0185c [Myco... 227 5e-58 gi|254821458|ref|ZP_05226459.1| hypothetical protein MintA_16100... 227 6e-58 gi|108802010|ref|YP_642207.1| hypothetical protein Mmcs_5047 [My... 226 1e-57 gi|118473945|ref|YP_890644.1| hypothetical protein MSMEG_6431 [M... 224 4e-57 gi|120406615|ref|YP_956444.1| hypothetical protein Mvan_5673 [My... 221 3e-56 gi|169627220|ref|YP_001700869.1| hypothetical protein MAB_0115c ... 221 3e-56 gi|333992801|ref|YP_004525415.1| hypothetical protein JDM601_416... 215 1e-54 gi|289572107|ref|ZP_06452334.1| conserved hypothetical protein [... 159 2e-37 gi|326384815|ref|ZP_08206491.1| putative DNA-binding protein [Go... 141 4e-32 gi|54022483|ref|YP_116725.1| putative DNA-binding protein [Nocar... 138 3e-31 gi|111022607|ref|YP_705579.1| hypothetical protein RHA1_ro05642 ... 135 2e-30 gi|312138626|ref|YP_004005962.1| hypothetical protein REQ_11790 ... 135 2e-30 gi|169627599|ref|YP_001701248.1| hypothetical protein MAB_0495c ... 134 5e-30 gi|226307869|ref|YP_002767829.1| hypothetical protein RER_43820 ... 132 3e-29 gi|318056885|ref|ZP_07975608.1| hypothetical protein SSA3_03019 ... 115 3e-24 gi|337766807|emb|CCB75518.1| conserved protein of unknown functi... 105 3e-21 gi|254386656|ref|ZP_05001952.1| conserved hypothetical protein [... 98.2 3e-19 gi|111025462|ref|YP_707882.1| hypothetical protein RHA1_ro08680 ... 94.7 4e-18 gi|302529612|ref|ZP_07281954.1| hypothetical protein SSMG_05994 ... 94.0 6e-18 gi|333027613|ref|ZP_08455677.1| hypothetical protein STTU_5117 [... 94.0 8e-18 gi|300783721|ref|YP_003764012.1| hypothetical protein AMED_1799 ... 91.7 3e-17 gi|258652171|ref|YP_003201327.1| XRE family transcriptional regu... 90.9 5e-17 gi|296141799|ref|YP_003649042.1| DNA-binding protein [Tsukamurel... 90.5 8e-17 gi|297155188|gb|ADI04900.1| hypothetical protein SBI_01779 [Stre... 89.4 2e-16 gi|345011354|ref|YP_004813708.1| helix-turn-helix domain-contain... 87.8 5e-16 gi|345010870|ref|YP_004813224.1| helix-turn-helix domain-contain... 87.8 5e-16 gi|337767278|emb|CCB75989.1| Helix-turn-helix protein [Streptomy... 87.8 5e-16 gi|302547482|ref|ZP_07299824.1| xre family toxin-antitoxin syste... 87.0 9e-16 gi|169630466|ref|YP_001704115.1| hypothetical protein MAB_3385 [... 85.9 2e-15 gi|256398026|ref|YP_003119590.1| hypothetical protein Caci_8936 ... 85.5 2e-15 gi|256392422|ref|YP_003113986.1| hypothetical protein Caci_3238 ... 85.5 3e-15 gi|331699792|ref|YP_004336031.1| hypothetical protein Psed_6070 ... 85.5 3e-15 gi|345007524|ref|YP_004800070.1| hypothetical protein Strvi_9314... 85.1 3e-15 gi|271966412|ref|YP_003340608.1| hypothetical protein Sros_5076 ... 84.3 6e-15 gi|159038649|ref|YP_001537902.1| hypothetical protein Sare_3100 ... 84.3 6e-15 gi|297154444|gb|ADI04156.1| hypothetical protein SBI_01035 [Stre... 82.8 1e-14 gi|302533076|ref|ZP_07285418.1| predicted protein [Streptomyces ... 82.4 2e-14 gi|300786439|ref|YP_003766730.1| hypothetical protein AMED_4558 ... 82.0 3e-14 gi|290957694|ref|YP_003488876.1| secondary metabolite protein [S... 82.0 3e-14 gi|324999523|ref|ZP_08120635.1| hypothetical protein PseP1_12181... 82.0 3e-14 gi|340527917|gb|AEK43122.1| hypothetical protein RAM_23210 [Amyc... 81.6 4e-14 >gi|308369258|ref|ZP_07417080.2| hypothetical protein TMBG_02391 [Mycobacterium tuberculosis SUMu002] gi|308371527|ref|ZP_07425222.2| hypothetical protein TMDG_01808 [Mycobacterium tuberculosis SUMu004] gi|308373849|ref|ZP_07433822.2| hypothetical protein TMFG_02087 [Mycobacterium tuberculosis SUMu006] 7 more sequence titles Length=137 Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 132/132 (100%), Positives = 132/132 (100%), Gaps = 0/132 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT Sbjct 6 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 65 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR Sbjct 66 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 125 Query 121 IDELRRAEGIDA 132 IDELRRAEGIDA Sbjct 126 IDELRRAEGIDA 137 >gi|15610985|ref|NP_218366.1| hypothetical protein Rv3849 [Mycobacterium tuberculosis H37Rv] gi|31795023|ref|NP_857516.1| hypothetical protein Mb3879 [Mycobacterium bovis AF2122/97] gi|121639767|ref|YP_979991.1| hypothetical protein BCG_3912 [Mycobacterium bovis BCG str. Pasteur 1173P2] 67 more sequence titles Length=132 Score = 274 bits (701), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 132/132 (100%), Positives = 132/132 (100%), Gaps = 0/132 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT Sbjct 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR Sbjct 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 Query 121 IDELRRAEGIDA 132 IDELRRAEGIDA Sbjct 121 IDELRRAEGIDA 132 >gi|15843480|ref|NP_338517.1| hypothetical protein MT3964 [Mycobacterium tuberculosis CDC1551] gi|13883852|gb|AAK48331.1| hypothetical protein MT3964 [Mycobacterium tuberculosis CDC1551] Length=132 Score = 272 bits (695), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 131/132 (99%), Positives = 131/132 (99%), Gaps = 0/132 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQ RSGNRTNPSGAT Sbjct 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQXRSGNRTNPSGAT 60 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR Sbjct 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 Query 121 IDELRRAEGIDA 132 IDELRRAEGIDA Sbjct 121 IDELRRAEGIDA 132 >gi|342351034|pdb|3R1F|A Chain A, Crystal Structure Of A Key Regulator Of Virulence In Mycobacterium Tuberculosis gi|342351035|pdb|3R1F|B Chain B, Crystal Structure Of A Key Regulator Of Virulence In Mycobacterium Tuberculosis gi|342351036|pdb|3R1F|C Chain C, Crystal Structure Of A Key Regulator Of Virulence In Mycobacterium Tuberculosis 15 more sequence titles Length=135 Score = 264 bits (675), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 128/131 (98%), Positives = 128/131 (98%), Gaps = 0/131 (0%) Query 2 STTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATM 61 STTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGIT SAPYLSQLRSGNRTNPSGAT Sbjct 5 STTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITXSAPYLSQLRSGNRTNPSGATX 64 Query 62 AALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRI 121 AALANFFRIKAAYFTDDEYYEKLDKELQWLCT RDDGVRRIAQRAHGLPSAAQQKVLDRI Sbjct 65 AALANFFRIKAAYFTDDEYYEKLDKELQWLCTXRDDGVRRIAQRAHGLPSAAQQKVLDRI 124 Query 122 DELRRAEGIDA 132 DELRRAEGIDA Sbjct 125 DELRRAEGIDA 135 >gi|240168325|ref|ZP_04746984.1| hypothetical protein MkanA1_03372 [Mycobacterium kansasii ATCC 12478] Length=132 Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 115/132 (88%), Positives = 125/132 (95%), Gaps = 0/132 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPS AT Sbjct 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSSAT 60 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 MAALANFFRI+AAYFTDD+YY K+DKELQWL MRDDGVRRIA+R+HGL + AQQ+++DR Sbjct 61 MAALANFFRIRAAYFTDDDYYAKIDKELQWLAAMRDDGVRRIAERSHGLSAQAQQEIVDR 120 Query 121 IDELRRAEGIDA 132 IDELRRAE +DA Sbjct 121 IDELRRAERLDA 132 >gi|118620035|ref|YP_908367.1| hypothetical protein MUL_5021 [Mycobacterium ulcerans Agy99] gi|183985368|ref|YP_001853659.1| hypothetical protein MMAR_5399 [Mycobacterium marinum M] gi|118572145|gb|ABL06896.1| conserved protein [Mycobacterium ulcerans Agy99] gi|183178694|gb|ACC43804.1| conserved protein [Mycobacterium marinum M] Length=132 Score = 240 bits (612), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 113/132 (86%), Positives = 123/132 (94%), Gaps = 0/132 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPS AT Sbjct 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSTAT 60 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 MAALANFFRIK+AYFTDDEYYE LD+ELQWL TMRDDGVRRIA R+ GL + AQQ++++R Sbjct 61 MAALANFFRIKSAYFTDDEYYENLDQELQWLATMRDDGVRRIAVRSQGLSTQAQQEIVER 120 Query 121 IDELRRAEGIDA 132 I+ELRR E +DA Sbjct 121 IEELRRTERLDA 132 >gi|15826914|ref|NP_301177.1| hypothetical protein ML0069 [Mycobacterium leprae TN] gi|221229392|ref|YP_002502808.1| hypothetical protein MLBr_00069 [Mycobacterium leprae Br4923] gi|13092461|emb|CAC29577.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932499|emb|CAR70162.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=132 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 110/131 (84%), Positives = 120/131 (92%), Gaps = 0/131 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPS AT Sbjct 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSSAT 60 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 ++ALANFFRIK AYFT+DEYYEKLD+EL WL TMRD+GVRRIA R GL + AQQ ++DR Sbjct 61 ISALANFFRIKPAYFTNDEYYEKLDQELAWLATMRDEGVRRIAMRTIGLSAQAQQDIVDR 120 Query 121 IDELRRAEGID 131 +DELRRAE +D Sbjct 121 VDELRRAEHLD 131 >gi|342860101|ref|ZP_08716753.1| hypothetical protein MCOL_14520 [Mycobacterium colombiense CECT 3035] gi|342132479|gb|EGT85708.1| hypothetical protein MCOL_14520 [Mycobacterium colombiense CECT 3035] Length=132 Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 111/132 (85%), Positives = 119/132 (91%), Gaps = 0/132 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPS AT Sbjct 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSTAT 60 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 MAALANFFRIK+AYFTDDEYYEKLDKEL WL T RDD VRRIA R L AQ++V++R Sbjct 61 MAALANFFRIKSAYFTDDEYYEKLDKELSWLATTRDDNVRRIAVRTAELSPEAQREVMER 120 Query 121 IDELRRAEGIDA 132 ++ELRRAE +DA Sbjct 121 VNELRRAEHLDA 132 >gi|296166978|ref|ZP_06849392.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897658|gb|EFG77250.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=132 Score = 229 bits (585), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 112/132 (85%), Positives = 119/132 (91%), Gaps = 0/132 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPS AT Sbjct 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSSAT 60 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 MAALANFFRIK AYFTDDEYYEKLD+EL +L T+RDDGVRR+A RA L AQQ VL R Sbjct 61 MAALANFFRIKPAYFTDDEYYEKLDQELSFLTTLRDDGVRRLALRAAELSPEAQQDVLQR 120 Query 121 IDELRRAEGIDA 132 ++ELRRAE +DA Sbjct 121 VNELRRAEHLDA 132 >gi|41406283|ref|NP_959119.1| hypothetical protein MAP0185c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118463431|ref|YP_879474.1| hypothetical protein MAV_0180 [Mycobacterium avium 104] gi|254773237|ref|ZP_05214753.1| hypothetical protein MaviaA2_00946 [Mycobacterium avium subsp. avium ATCC 25291] gi|41394631|gb|AAS02502.1| hypothetical protein MAP_0185c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118164718|gb|ABK65615.1| conserved hypothetical protein [Mycobacterium avium 104] gi|336461869|gb|EGO40724.1| Helix-turn-helix protein [Mycobacterium avium subsp. paratuberculosis S397] Length=132 Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 110/132 (84%), Positives = 116/132 (88%), Gaps = 0/132 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPS AT Sbjct 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSSAT 60 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 MAALANFFRIK AYFTDDEYYEKLD EL WL RDD VRRIA R L AQ++V+DR Sbjct 61 MAALANFFRIKPAYFTDDEYYEKLDAELSWLAMSRDDNVRRIAMRTAELSPEAQREVMDR 120 Query 121 IDELRRAEGIDA 132 ++ELRRAE +DA Sbjct 121 VNELRRAEHLDA 132 >gi|254821458|ref|ZP_05226459.1| hypothetical protein MintA_16100 [Mycobacterium intracellulare ATCC 13950] Length=132 Score = 227 bits (578), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 110/132 (84%), Positives = 117/132 (89%), Gaps = 0/132 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MSTTFAARLNRLFDTVYPPGRG HTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPS AT Sbjct 1 MSTTFAARLNRLFDTVYPPGRGAHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSSAT 60 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 MAALANFFRIK AYFTDDEYYEKLDKEL WL T RDD VRRIA R L AQ++V++R Sbjct 61 MAALANFFRIKPAYFTDDEYYEKLDKELSWLATARDDNVRRIAMRTAELSPEAQREVMER 120 Query 121 IDELRRAEGIDA 132 ++ELRRAE +DA Sbjct 121 VNELRRAEHLDA 132 >gi|108802010|ref|YP_642207.1| hypothetical protein Mmcs_5047 [Mycobacterium sp. MCS] gi|119871162|ref|YP_941114.1| hypothetical protein Mkms_5135 [Mycobacterium sp. KMS] gi|126437989|ref|YP_001073680.1| hypothetical protein Mjls_5426 [Mycobacterium sp. JLS] gi|108772429|gb|ABG11151.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119697251|gb|ABL94324.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126237789|gb|ABO01190.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=132 Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 108/131 (83%), Positives = 114/131 (88%), Gaps = 0/131 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MS TFAARLNRLFDTVYPPGRGPHTSAEVI ALKAEGITMSAPYLSQLRSGNRTNPS AT Sbjct 1 MSKTFAARLNRLFDTVYPPGRGPHTSAEVIGALKAEGITMSAPYLSQLRSGNRTNPSQAT 60 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 MAALANFFRIK AYFTDDEYYEKLDKEL WL MRD+GVRRIA R GL AQQ ++ + Sbjct 61 MAALANFFRIKPAYFTDDEYYEKLDKELTWLANMRDEGVRRIAARTVGLSPEAQQDIVAK 120 Query 121 IDELRRAEGID 131 +DELRR E +D Sbjct 121 VDELRRKENLD 131 >gi|118473945|ref|YP_890644.1| hypothetical protein MSMEG_6431 [Mycobacterium smegmatis str. MC2 155] gi|118175232|gb|ABK76128.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=142 Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 107/132 (82%), Positives = 115/132 (88%), Gaps = 0/132 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MS TFAARLNRLFDTVYPPGRGPHTSAEVIAALK+EGITMSAPYLSQLRSGNRTNPS AT Sbjct 9 MSKTFAARLNRLFDTVYPPGRGPHTSAEVIAALKSEGITMSAPYLSQLRSGNRTNPSAAT 68 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 MAALANFFRIK AYFTDDEYYEKLDKEL WL MRD+GVRRIA R GL AQQ ++ + Sbjct 69 MAALANFFRIKPAYFTDDEYYEKLDKELTWLANMRDEGVRRIAARTVGLSPEAQQDLVQK 128 Query 121 IDELRRAEGIDA 132 +ELRR E +D+ Sbjct 129 AEELRRREQLDS 140 >gi|120406615|ref|YP_956444.1| hypothetical protein Mvan_5673 [Mycobacterium vanbaalenii PYR-1] gi|145221725|ref|YP_001132403.1| hypothetical protein Mflv_1133 [Mycobacterium gilvum PYR-GCK] gi|315446539|ref|YP_004079418.1| hypothetical protein Mspyr1_50540 [Mycobacterium sp. Spyr1] gi|119959433|gb|ABM16438.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] gi|145214211|gb|ABP43615.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] gi|315264842|gb|ADU01584.1| hypothetical protein Mspyr1_50540 [Mycobacterium sp. Spyr1] Length=132 Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 106/131 (81%), Positives = 115/131 (88%), Gaps = 0/131 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MS TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEG+TMSAPYLSQLRSGNRTNPS AT Sbjct 1 MSNTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGVTMSAPYLSQLRSGNRTNPSVAT 60 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 MAALANFFRIK AYFTDDEYYEKLDKEL L MRD+GVRRIA R GL + A+Q ++ + Sbjct 61 MAALANFFRIKPAYFTDDEYYEKLDKELTLLAGMRDEGVRRIAARTVGLSAEAKQDIVQK 120 Query 121 IDELRRAEGID 131 +DELRR E +D Sbjct 121 VDELRRRENLD 131 >gi|169627220|ref|YP_001700869.1| hypothetical protein MAB_0115c [Mycobacterium abscessus ATCC 19977] gi|169239187|emb|CAM60215.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=132 Score = 221 bits (562), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 104/132 (79%), Positives = 113/132 (86%), Gaps = 0/132 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MSTTF ARLNRLFDTVYPPGRGPHTSAEVIAAL++EGITMSAPYLSQLRSGNRTNPS AT Sbjct 1 MSTTFTARLNRLFDTVYPPGRGPHTSAEVIAALRSEGITMSAPYLSQLRSGNRTNPSSAT 60 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 M ALANFFRIK AYFTDDEYYEKLD+EL WL MRD+GVRRIA R GL AQ ++ Sbjct 61 MKALANFFRIKPAYFTDDEYYEKLDQELTWLANMRDEGVRRIAARTVGLSVEAQDRITQT 120 Query 121 IDELRRAEGIDA 132 +DE RR EG+D+ Sbjct 121 VDEYRRKEGLDS 132 >gi|333992801|ref|YP_004525415.1| hypothetical protein JDM601_4161 [Mycobacterium sp. JDM601] gi|333488769|gb|AEF38161.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=132 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 106/132 (81%), Positives = 112/132 (85%), Gaps = 0/132 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MS TFA RLNRLFD VYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPS AT Sbjct 1 MSATFAVRLNRLFDVVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSVAT 60 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 MAALANFFRIK A+FTDD+YY KLD EL WL ++RDDGVRRIA A GL AQ+ VL R Sbjct 61 MAALANFFRIKPAFFTDDDYYAKLDAELTWLDSLRDDGVRRIATHAVGLSPEAQEDVLAR 120 Query 121 IDELRRAEGIDA 132 IDELRR E + A Sbjct 121 IDELRRKEHLSA 132 >gi|289572107|ref|ZP_06452334.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289545862|gb|EFD49509.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] Length=77 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 77/77 (100%), Positives = 77/77 (100%), Gaps = 0/77 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT Sbjct 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 Query 61 MAALANFFRIKAAYFTD 77 MAALANFFRIKAAYFTD Sbjct 61 MAALANFFRIKAAYFTD 77 >gi|326384815|ref|ZP_08206491.1| putative DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] gi|326196477|gb|EGD53675.1| putative DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] Length=136 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 68/130 (53%), Positives = 91/130 (70%), Gaps = 0/130 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 M FA RLNRLF+TV+PPGR PHT+AEV A L A G +S PYLSQLR+G+RTNPS T Sbjct 1 MDDGFAERLNRLFETVHPPGRKPHTNAEVAATLSAAGHKISKPYLSQLRNGHRTNPSPET 60 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 +AALA FF++K YF DD Y ++D +L+ L +R G+RR++ RA L +Q+ + Sbjct 61 VAALARFFKVKPDYFYDDVYAAQIDHDLELLSQLRGHGLRRLSSRAFDLSEESQEMLAAM 120 Query 121 IDELRRAEGI 130 ++LRR EG+ Sbjct 121 AEKLRRGEGL 130 >gi|54022483|ref|YP_116725.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54013991|dbj|BAD55361.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length=138 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 67/126 (54%), Positives = 90/126 (72%), Gaps = 0/126 (0%) Query 5 FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAAL 64 FAARLN+LF+TV+PPGR PHT+AEV AAL A G +S PYLSQLRSG RTNPS T+AAL Sbjct 4 FAARLNKLFETVHPPGRKPHTNAEVAAALTASGHPISKPYLSQLRSGQRTNPSDETVAAL 63 Query 65 ANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDEL 124 A FF++K YF +D Y K+D +L+ L ++ G+RR++ RA L +Q + ++L Sbjct 64 AKFFKVKPDYFFNDIYAAKIDHDLELLSQLQGYGLRRLSSRAFDLSEESQNLLTSMAEKL 123 Query 125 RRAEGI 130 R +EG+ Sbjct 124 RASEGL 129 >gi|111022607|ref|YP_705579.1| hypothetical protein RHA1_ro05642 [Rhodococcus jostii RHA1] gi|226365114|ref|YP_002782897.1| hypothetical protein ROP_57050 [Rhodococcus opacus B4] gi|110822137|gb|ABG97421.1| conserved hypothetical protein [Rhodococcus jostii RHA1] gi|226243604|dbj|BAH53952.1| hypothetical protein [Rhodococcus opacus B4] Length=138 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/126 (52%), Positives = 90/126 (72%), Gaps = 0/126 (0%) Query 5 FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAAL 64 FAARLN+LFDTV+PPGR PHT+AEV AAL A+G +S PY+SQLRSG RTNPS T+AA Sbjct 4 FAARLNKLFDTVHPPGRKPHTNAEVAAALIADGHQISKPYISQLRSGQRTNPSDETVAAF 63 Query 65 ANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDEL 124 A FF++K YF +D Y K+D +L+ L ++ G+R+++ RA L +Q + ++L Sbjct 64 ARFFKVKPDYFFNDIYAAKIDHDLELLSQLQGYGLRKLSSRAFDLSEESQNLLTTMAEKL 123 Query 125 RRAEGI 130 R +EG+ Sbjct 124 RASEGL 129 >gi|312138626|ref|YP_004005962.1| hypothetical protein REQ_11790 [Rhodococcus equi 103S] gi|325676307|ref|ZP_08155986.1| hypothetical protein HMPREF0724_13769 [Rhodococcus equi ATCC 33707] gi|311887965|emb|CBH47277.1| conserved hypothetical protein [Rhodococcus equi 103S] gi|325552868|gb|EGD22551.1| hypothetical protein HMPREF0724_13769 [Rhodococcus equi ATCC 33707] Length=138 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 66/128 (52%), Positives = 91/128 (72%), Gaps = 0/128 (0%) Query 3 TTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMA 62 + FAARLN+LF+TV+PPGR PHT+AEV AL A+G +S PY+SQLRSG R+NPS T+A Sbjct 2 SDFAARLNKLFETVHPPGRKPHTNAEVANALIADGHKISKPYISQLRSGQRSNPSDETVA 61 Query 63 ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID 122 A A FF++K AYF +D Y K+D +L+ L ++ G+RR+A RA L +Q + + Sbjct 62 AFAKFFKVKPAYFFNDIYASKIDHDLELLNQLQGYGLRRLATRAFDLSEESQTLLTTLAE 121 Query 123 ELRRAEGI 130 +LR AEG+ Sbjct 122 KLRAAEGL 129 >gi|169627599|ref|YP_001701248.1| hypothetical protein MAB_0495c [Mycobacterium abscessus ATCC 19977] gi|169239566|emb|CAM60594.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=140 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 60/126 (48%), Positives = 87/126 (70%), Gaps = 0/126 (0%) Query 5 FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAAL 64 F+ RL+ LF TV+P GRGP++ EV+AAL G+ +S+PYLS LR G R+NP+ + AL Sbjct 4 FSKRLSHLFATVHPAGRGPYSLNEVVAALGKRGVEVSSPYLSLLRKGERSNPAPEIVTAL 63 Query 65 ANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDEL 124 A FF++ AYF D +Y E ++++L WL +RD VR IAQR++ L ++Q + D +D L Sbjct 64 AEFFQVSPAYFYDADYAESVNRDLDWLVQLRDSKVREIAQRSYALSEHSRQAIADMVDHL 123 Query 125 RRAEGI 130 R+ EGI Sbjct 124 RKVEGI 129 >gi|226307869|ref|YP_002767829.1| hypothetical protein RER_43820 [Rhodococcus erythropolis PR4] gi|229494926|ref|ZP_04388677.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|226186986|dbj|BAH35090.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] gi|229318150|gb|EEN84020.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=138 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 63/126 (50%), Positives = 88/126 (70%), Gaps = 0/126 (0%) Query 5 FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAAL 64 FA RLN+LFD+V+PPGR PHT+AEV AAL +G +S PY+SQLRSG RTNPS T+AA Sbjct 4 FAERLNKLFDSVHPPGRKPHTNAEVAAALIEDGHQISKPYISQLRSGQRTNPSDETVAAF 63 Query 65 ANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDEL 124 A FF++K YF +D Y K+D +L+ L ++ G+RR++ RA L +Q + ++L Sbjct 64 ARFFKVKPDYFFNDIYAAKIDHDLELLSQLQGYGLRRLSSRAFDLSEESQNLLTTMAEKL 123 Query 125 RRAEGI 130 R +EG+ Sbjct 124 RASEGL 129 >gi|318056885|ref|ZP_07975608.1| hypothetical protein SSA3_03019 [Streptomyces sp. SA3_actG] Length=153 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 60/128 (47%), Positives = 82/128 (65%), Gaps = 1/128 (0%) Query 4 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEG-ITMSAPYLSQLRSGNRTNPSGATMA 62 +FA RL+ LF+TV+P GRGP+T EV +K +G T+SA Y+ QLRSG R NP+ M Sbjct 11 SFAQRLDHLFETVHPKGRGPYTYEEVATGIKRQGGPTISASYIWQLRSGGRDNPTKRHME 70 Query 63 ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID 122 AL+ FF + AYF DD +K+ E+ L +RD+GVR +A RA GL S + Q + + ID Sbjct 71 ALSAFFGVPVAYFFDDNTSKKIQAEIDALAVLRDNGVRSLALRASGLSSKSLQIIGEMID 130 Query 123 ELRRAEGI 130 R EG+ Sbjct 131 RTRELEGL 138 >gi|337766807|emb|CCB75518.1| conserved protein of unknown function [Streptomyces cattleya NRRL 8057] Length=148 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 55/128 (43%), Positives = 79/128 (62%), Gaps = 1/128 (0%) Query 4 TFAARLNRLFDTVYPPGRGPHTSAEVIAALK-AEGITMSAPYLSQLRSGNRTNPSGATMA 62 TFA L+ LF V+P GRGP+T +EV ++ G+T+SA + QLR+G TNP T+ Sbjct 8 TFAELLDYLFREVHPKGRGPYTYSEVSQGIRDTSGVTISASAIQQLRTGTNTNPKMQTIR 67 Query 63 ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID 122 ALA FF + YF D+ E+ E+Q + MRD VRR+A RA+GL +++ + ID Sbjct 68 ALAGFFGVNPGYFFDEAEAERQRAEIQLVAAMRDQDVRRVALRANGLSTSSLHMLNTVID 127 Query 123 ELRRAEGI 130 + RR EG+ Sbjct 128 QARRLEGM 135 >gi|254386656|ref|ZP_05001952.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194345497|gb|EDX26463.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length=151 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 53/133 (40%), Positives = 79/133 (60%), Gaps = 4/133 (3%) Query 2 STTFAARLNRLFDTVYPPGRGPHTSAEVIAALK----AEGITMSAPYLSQLRSGNRTNPS 57 S TFA L+ LF V+PP RGP+T AEV ++ EG ++A + QLR+G + NP+ Sbjct 6 SPTFAQLLDHLFREVHPPSRGPYTYAEVAEGIRKAATGEGRGVTASAIQQLRTGAKRNPT 65 Query 58 GATMAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKV 117 T+ ALA+FF + A YF D E+ E+ L MRD VR++A RA+GL + + + Sbjct 66 RHTIKALADFFGVPAGYFVDSAAAERTKAEIGLLAAMRDQDVRKVALRANGLSVDSLKML 125 Query 118 LDRIDELRRAEGI 130 I++ R+ EG+ Sbjct 126 STVIEQARKLEGL 138 >gi|111025462|ref|YP_707882.1| hypothetical protein RHA1_ro08680 [Rhodococcus jostii RHA1] gi|110824441|gb|ABG99724.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=114 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 45/107 (43%), Positives = 68/107 (64%), Gaps = 0/107 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT 60 MS +FA RL LFDTV+P GRGP++ AEV+ A++A G M+ Y+SQL SG R++PS T Sbjct 1 MSESFAERLRHLFDTVHPKGRGPYSQAEVVEAIRAAGGNMTPGYMSQLLSGKRSSPSWTT 60 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAH 107 + + F + YF DD+ YE++ + ++ +RD + IA R + Sbjct 61 LRDICRVFAVPMDYFNDDDVYEEIKGYIAYIQDLRDAEDQNIAARTY 107 >gi|302529612|ref|ZP_07281954.1| hypothetical protein SSMG_05994 [Streptomyces sp. AA4] gi|302438507|gb|EFL10323.1| hypothetical protein SSMG_05994 [Streptomyces sp. AA4] Length=149 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/129 (45%), Positives = 76/129 (59%), Gaps = 3/129 (2%) Query 4 TFAARLNRLFDTVYPPGRGPHTSAEVIAALK--AEGITMSAPYLSQLRSGNRTNPSGATM 61 T A+RL+ LF TV P GR T+AEV A LK + + A YLSQLR+G RTNPS + Sbjct 13 TLASRLDDLFRTVRPQGRH-WTNAEVAAELKRATPELKVGAVYLSQLRTGKRTNPSQELL 71 Query 62 AALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRI 121 AALA FF + AYF DD+ + EL + MR GVR +A RA G+ Q + + Sbjct 72 AALAKFFGVSVAYFFDDDVAGSVLSELAAVEAMRQAGVRAVAMRAAGMREENLQAITTIM 131 Query 122 DELRRAEGI 130 D+ R+ +G+ Sbjct 132 DQYRKMQGL 140 >gi|333027613|ref|ZP_08455677.1| hypothetical protein STTU_5117 [Streptomyces sp. Tu6071] gi|332747465|gb|EGJ77906.1| hypothetical protein STTU_5117 [Streptomyces sp. Tu6071] Length=148 Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 55/128 (43%), Positives = 81/128 (64%), Gaps = 1/128 (0%) Query 4 TFAARLNRLFDTVYPPGRGPHTSAEVIAALK-AEGITMSAPYLSQLRSGNRTNPSGATMA 62 +FA L+ LF V+P GRGP+T AEV ++ + I +SA + QLR+G TNP T+ Sbjct 9 SFAELLDYLFREVHPKGRGPYTYAEVSQRIRESSDIAISASAIQQLRTGINTNPKMQTIR 68 Query 63 ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID 122 +LA+FF + AYF D+E E+ E+Q L MRD VR +A RA+GL +++ Q + ID Sbjct 69 SLASFFGVSPAYFFDEEEAERQRAEIQVLAAMRDRDVRNVALRANGLSASSLQMLATVID 128 Query 123 ELRRAEGI 130 + R+ EG+ Sbjct 129 QARKLEGM 136 >gi|300783721|ref|YP_003764012.1| hypothetical protein AMED_1799 [Amycolatopsis mediterranei U32] gi|299793235|gb|ADJ43610.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340525111|gb|AEK40316.1| hypothetical protein RAM_09130 [Amycolatopsis mediterranei S699] Length=144 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/127 (43%), Positives = 73/127 (58%), Gaps = 1/127 (0%) Query 3 TTFAARLNRLFDTVYPPGRGPHTSAEVIAALK-AEGITMSAPYLSQLRSGNRTNPSGATM 61 +T A +++RLF V P R P+++ EV A + A G + S YL QLR+G R NP+ + Sbjct 8 STLADKIDRLFHVVRRPDREPYSNEEVAKACREATGESFSTTYLWQLRTGRRDNPTKRHL 67 Query 62 AALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRI 121 ALA FF + AYF DDE K+ +EL L +RD GVR +A RA L S + D I Sbjct 68 EALAQFFGVPPAYFFDDEQSRKIAEELALLGALRDAGVRDLALRAVTLSSDGLDTISDMI 127 Query 122 DELRRAE 128 D + R E Sbjct 128 DAIARRE 134 >gi|258652171|ref|YP_003201327.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555396|gb|ACV78338.1| putative transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length=156 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 52/125 (42%), Positives = 72/125 (58%), Gaps = 1/125 (0%) Query 5 FAARLNRLFDTV-YPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAA 63 A RL+ LF TV P GRG ++ + L +G MSA YLSQLR+G R NPS + A Sbjct 11 LAERLDHLFRTVPRPGGRGLWSNEQASVELARQGTPMSAAYLSQLRNGKRDNPSARHLNA 70 Query 64 LANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDE 123 LA+ F + +YF D + +K++ +L+ L +RD V+ IA RAHGL V ID Sbjct 71 LASLFAVPISYFFDSDTADKINNDLRLLSAIRDSDVQAIALRAHGLSPDGLASVKGIIDH 130 Query 124 LRRAE 128 +R+ E Sbjct 131 IRKVE 135 >gi|296141799|ref|YP_003649042.1| DNA-binding protein [Tsukamurella paurometabola DSM 20162] gi|296029933|gb|ADG80703.1| putative DNA-binding protein [Tsukamurella paurometabola DSM 20162] Length=134 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 44/107 (42%), Positives = 70/107 (66%), Gaps = 0/107 (0%) Query 3 TTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMA 62 TTFAA+LNRLF+ V+P RGP+TS+E ++ G +S PYLSQLRSG + P+ +A Sbjct 2 TTFAAKLNRLFEVVHPADRGPYTSSEFCRMVEESGGKLSVPYLSQLRSGRSSRPAYDMVA 61 Query 63 ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGL 109 ++A F ++A YF+D Y ++ +L+ +R+ G+ +A+R+ L Sbjct 62 SIAQTFGVRAEYFSDPLYEREVLADLELTRELRESGMLEMARRSVKL 108 >gi|297155188|gb|ADI04900.1| hypothetical protein SBI_01779 [Streptomyces bingchenggensis BCW-1] Length=175 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/131 (39%), Positives = 75/131 (58%), Gaps = 8/131 (6%) Query 3 TTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAE----GITMSAPYLSQLRSGNRTNPSG 58 + A RLN LF T++PPG P+T+A V A+ G++++ YLS LR+G RTNPS Sbjct 14 SPLARRLNYLFATMHPPG-APYTNAHVAEAISGGDEYGGVSLTEQYLSMLRNGKRTNPSP 72 Query 59 ATMAALANFFRIKAAYFTDD---EYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQ 115 + ALA FF + Y D E++++E+++L MRD VR IA R+ GLP Q Sbjct 73 DVLRALAKFFAVPVGYLLGDLSPSQAERVEEEVRFLVAMRDKRVRGIALRSVGLPPEVQD 132 Query 116 KVLDRIDELRR 126 + I + R+ Sbjct 133 SLAAIISQFRQ 143 >gi|345011354|ref|YP_004813708.1| helix-turn-helix domain-containing protein [Streptomyces violaceusniger Tu 4113] gi|344037703|gb|AEM83428.1| helix-turn-helix domain protein [Streptomyces violaceusniger Tu 4113] Length=175 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 50/131 (39%), Positives = 75/131 (58%), Gaps = 8/131 (6%) Query 3 TTFAARLNRLFDTVYPPGRGPHTSA----EVIAALKAEGITMSAPYLSQLRSGNRTNPSG 58 + A RLN LF T++PPG P+T+A E+ + G++++ YLS LR+G RTNPS Sbjct 14 SPLADRLNYLFTTMHPPG-APYTNAYVAEEISGGEEYGGVSVTEQYLSMLRNGKRTNPSP 72 Query 59 ATMAALANFFRIKAAYFTDD---EYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQ 115 + ALA FF + Y D E++++E+++L MRD VR IA R+ GLP Q Sbjct 73 DVLRALAKFFAVPVGYLLGDLSPSQAERVEEEVRFLVAMRDKRVRSIALRSVGLPPEVQD 132 Query 116 KVLDRIDELRR 126 + I + R+ Sbjct 133 SLTTIISQFRQ 143 >gi|345010870|ref|YP_004813224.1| helix-turn-helix domain-containing protein [Streptomyces violaceusniger Tu 4113] gi|344037219|gb|AEM82944.1| helix-turn-helix domain protein [Streptomyces violaceusniger Tu 4113] Length=146 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/129 (40%), Positives = 74/129 (58%), Gaps = 3/129 (2%) Query 4 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEG--ITMSAPYLSQLRSGNRTNPSGATM 61 T A RL+ LF TV P G+ T+AEV LK + + YLSQLR+G R+NPS + Sbjct 9 TLAVRLDNLFKTVRPKGKH-WTNAEVAEELKRANPELKVGGVYLSQLRTGKRSNPSPDLL 67 Query 62 AALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRI 121 AALA FF + AYF DD+ E + E+ + +R GVR +A RA G+ + + + Sbjct 68 AALARFFGVSVAYFFDDQVAESVLSEVAAIEALRQAGVRAVAMRAAGMKKENLEAITTIM 127 Query 122 DELRRAEGI 130 D+ R+ +G+ Sbjct 128 DQYRQLQGL 136 >gi|337767278|emb|CCB75989.1| Helix-turn-helix protein [Streptomyces cattleya NRRL 8057] Length=146 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 52/128 (41%), Positives = 74/128 (58%), Gaps = 3/128 (2%) Query 5 FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEG--ITMSAPYLSQLRSGNRTNPSGATMA 62 A RL+ LF TV P G+ T+AEV LK + + YLSQLR+G R+NPS +A Sbjct 10 LAVRLDNLFKTVRPKGKH-WTNAEVAEELKRANPDLRVGGVYLSQLRTGKRSNPSPDLLA 68 Query 63 ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID 122 ALA FF + AYF DD+ E + E+ + +R GVR +A RA G+ S Q + +D Sbjct 69 ALARFFGVSVAYFFDDKVAESVLSEVAAIEALRQAGVRAVAMRAAGMKSENLQAITAIMD 128 Query 123 ELRRAEGI 130 + R+ +G+ Sbjct 129 QYRQMQGL 136 >gi|302547482|ref|ZP_07299824.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302465100|gb|EFL28193.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length=160 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 52/130 (40%), Positives = 74/130 (57%), Gaps = 5/130 (3%) Query 4 TFAARLNRLFDTVYPPGRGPH-TSAEVIAALKAEG--ITMSAPYLSQLRSGNRTNPSGAT 60 A RL+ LF TV P G+ H T+AEV LK + + YLSQLR+G R+NPS Sbjct 15 VLAVRLDNLFKTVRPKGK--HWTNAEVAEELKRANPELKVGGVYLSQLRTGKRSNPSPDL 72 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 +AALA FF + AYF DD+ E + E+ + +R GVR +A RA G+ Q + Sbjct 73 LAALARFFGVSVAYFFDDKVAESVLSEVAAIEALRQAGVRAVAMRAAGMKKENLQAITTI 132 Query 121 IDELRRAEGI 130 +D+ R+ +G+ Sbjct 133 MDQYRQMQGL 142 >gi|169630466|ref|YP_001704115.1| hypothetical protein MAB_3385 [Mycobacterium abscessus ATCC 19977] gi|169242433|emb|CAM63461.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=248 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 40/114 (36%), Positives = 67/114 (59%), Gaps = 0/114 (0%) Query 5 FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAAL 64 F +RLNR+F ++ PGRGP++++E + ++ G +SAPYLSQLR+G R PS + ++ Sbjct 120 FVSRLNRVFAVLHSPGRGPYSNSEFLVFMRTGGTVVSAPYLSQLRNGQRGRPSLQALESI 179 Query 65 ANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVL 118 A+ FRI YF D Y ++L+ +L L + + + LP + ++L Sbjct 180 AHAFRIDVRYFIDSGYADELESDLSALELAHNPAAAELTSKLLELPEPVRDQLL 233 >gi|256398026|ref|YP_003119590.1| hypothetical protein Caci_8936 [Catenulispora acidiphila DSM 44928] gi|256364252|gb|ACU77749.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928] Length=154 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/130 (36%), Positives = 74/130 (57%), Gaps = 3/130 (2%) Query 4 TFAARLNRLFDTVYPPGRG-PHTSAEVIAALKAEG--ITMSAPYLSQLRSGNRTNPSGAT 60 A R+ LF TVYP G P+T E + + A+ +S YLSQLR+G++ +P+ Sbjct 13 VIAKRIEHLFTTVYPGSLGRPYTLREAVEKINADAGENLISVAYLSQLRNGDKRHPAFDK 72 Query 61 MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR 120 +A +A F + YF DDE + D++L + MR+ GV R+A R+ GL + + + +L Sbjct 73 LAGVAKLFGVSTDYFLDDETAARTDQQLALVAAMREQGVDRLATRSLGLSANSLEAILGM 132 Query 121 IDELRRAEGI 130 I+ R+ EG+ Sbjct 133 IENARKIEGL 142 >gi|256392422|ref|YP_003113986.1| hypothetical protein Caci_3238 [Catenulispora acidiphila DSM 44928] gi|256358648|gb|ACU72145.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928] Length=152 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/126 (42%), Positives = 70/126 (56%), Gaps = 1/126 (0%) Query 4 TFAARLNRLFDTVYPPGRGPHTSAEVIAALK-AEGITMSAPYLSQLRSGNRTNPSGATMA 62 T A +++ LF TV P R ++ EV A + A G + SA YL QLR+G R NP+ + Sbjct 11 TLAEKIDILFQTVRRPNRELFSNDEVATACREATGESFSATYLWQLRTGRRDNPTMRHLE 70 Query 63 ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID 122 ALA FF + AYF DD+ + +EL+ L +RD GVR +A RA L + D ID Sbjct 71 ALAQFFEVPVAYFFDDDQSSAIARELELLGVLRDAGVRNVALRALTLSPEGIDTLNDMID 130 Query 123 ELRRAE 128 L R E Sbjct 131 VLVRHE 136 >gi|331699792|ref|YP_004336031.1| hypothetical protein Psed_6070 [Pseudonocardia dioxanivorans CB1190] gi|326954481|gb|AEA28178.1| hypothetical protein Psed_6070 [Pseudonocardia dioxanivorans CB1190] Length=166 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 48/126 (39%), Positives = 70/126 (56%), Gaps = 0/126 (0%) Query 4 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAA 63 + RLN LF+TV+PPGR P+++AEV + A G +SA Y+ ++ +G R PS + Sbjct 32 SIPERLNYLFETVHPPGRKPYSAAEVARWINANGGKISAVYILKILNGERETPSHRYLKQ 91 Query 64 LANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDE 123 +A FF + F DD+ E + L +RDD V+ + RA L +Q + D ID Sbjct 92 IAQFFGVSLGVFYDDDPPELDAEALHTQIALRDDKVQSMMLRASRLSPRSQDAISDIIDN 151 Query 124 LRRAEG 129 L RAEG Sbjct 152 LLRAEG 157 >gi|345007524|ref|YP_004800070.1| hypothetical protein Strvi_9314 [Streptomyces violaceusniger Tu 4113] gi|344042863|gb|AEM88587.1| hypothetical protein Strvi_9314 [Streptomyces violaceusniger Tu 4113] Length=140 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/125 (40%), Positives = 71/125 (57%), Gaps = 2/125 (1%) Query 4 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEG-ITMSAPYLSQLRSGNRTNPSGATMA 62 TF+ RLNRLF+ V+P RGP+++ EV L G T+S YL QLR+G R NP+ + Sbjct 3 TFSERLNRLFEVVHPQDRGPYSNQEVAKLLHERGGPTLSHVYLWQLRTGRRDNPTRRHLE 62 Query 63 ALANFFRIKAAYFTDDEYYEKLDKELQ-WLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRI 121 ALA FF + AYF DD +++ + W + V++IA RA L Q VL + Sbjct 63 ALAEFFGVPVAYFFDDGIALQVESAIALWQGLRNNQQVQKIAMRAAHLTPEGQAAVLGVV 122 Query 122 DELRR 126 +++ R Sbjct 123 EQILR 127 >gi|271966412|ref|YP_003340608.1| hypothetical protein Sros_5076 [Streptosporangium roseum DSM 43021] gi|270509587|gb|ACZ87865.1| hypothetical protein Sros_5076 [Streptosporangium roseum DSM 43021] Length=154 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 51/129 (40%), Positives = 70/129 (55%), Gaps = 1/129 (0%) Query 1 MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALK-AEGITMSAPYLSQLRSGNRTNPSGA 59 ++ T + R++ LF V P H+ EV A + + G T SA YL QLR+G R NP+ Sbjct 10 VAGTLSDRIDHLFQVVRRPNGEQHSHEEVAKACRESTGETFSATYLWQLRTGRRDNPTKR 69 Query 60 TMAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLD 119 + ALA FF++ AYF DDE + KEL+ L +R+ VR +A RA L V D Sbjct 70 HLEALAAFFQVPPAYFFDDEQGAVIAKELELLGALRNSAVRDVALRAVNLSEEGLGTVAD 129 Query 120 RIDELRRAE 128 ID + R E Sbjct 130 IIDAIERRE 138 >gi|159038649|ref|YP_001537902.1| hypothetical protein Sare_3100 [Salinispora arenicola CNS-205] gi|157917484|gb|ABV98911.1| conserved hypothetical protein [Salinispora arenicola CNS-205] Length=149 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 51/128 (40%), Positives = 81/128 (64%), Gaps = 1/128 (0%) Query 4 TFAARLNRLFDTVYPPGRGPHTSAEVIAA-LKAEGITMSAPYLSQLRSGNRTNPSGATMA 62 +FA RLN LF+ V +++ EV AA L+ +G+T+SA YL LR+G R NP+ + Sbjct 7 SFADRLNYLFEVVTKSDCRRYSNEEVAAAILQDQGVTISASYLWYLRTGQRDNPTVRHLH 66 Query 63 ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID 122 ALA+FF + AYF +D ++++ EL +RD GVR +A RA+GL + + + + D I+ Sbjct 67 ALASFFGVPPAYFVEDAADKRVEAELAVAAAIRDVGVRTVALRANGLSAKSLETIRDVIE 126 Query 123 ELRRAEGI 130 +R+ EG+ Sbjct 127 RVRQLEGL 134 >gi|297154444|gb|ADI04156.1| hypothetical protein SBI_01035 [Streptomyces bingchenggensis BCW-1] Length=156 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/121 (41%), Positives = 68/121 (57%), Gaps = 1/121 (0%) Query 3 TTFAARLNRLFDTVYPPGRGPHTSAEVIAALK-AEGITMSAPYLSQLRSGNRTNPSGATM 61 + A +++ LF V P R ++ EV A + A G T SA YL QLR+G R NP+ + Sbjct 9 SVLADKIDTLFKVVRRPDRQQYSHEEVARACREATGETFSATYLWQLRTGRRDNPTKRHL 68 Query 62 AALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRI 121 ALA FF++ AYF DDE ++ +EL+ L +RD GVR +A RA L + D I Sbjct 69 EALAQFFQVPPAYFFDDEQGAEIARELELLGALRDAGVRDVALRAVNLSPEGLGTISDVI 128 Query 122 D 122 D Sbjct 129 D 129 >gi|302533076|ref|ZP_07285418.1| predicted protein [Streptomyces sp. C] gi|302441971|gb|EFL13787.1| predicted protein [Streptomyces sp. C] Length=150 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/128 (39%), Positives = 72/128 (57%), Gaps = 3/128 (2%) Query 5 FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEG--ITMSAPYLSQLRSGNRTNPSGATMA 62 A RL+ LF TV P G+ T+AEV LK + + YLSQLR+G R+NPS +A Sbjct 14 LATRLDDLFKTVRPKGKH-WTNAEVAEELKRANPELKVGGVYLSQLRTGKRSNPSPDLLA 72 Query 63 ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID 122 ALA FF + AYF DD+ E + ++ + +R GVR +A RA G+ + +D Sbjct 73 ALARFFGVSVAYFFDDKVAESVLSQVAAIEALRQSGVRAVAMRAAGMKKENLAAITAIMD 132 Query 123 ELRRAEGI 130 + R+ +G+ Sbjct 133 QYRQLQGL 140 >gi|300786439|ref|YP_003766730.1| hypothetical protein AMED_4558 [Amycolatopsis mediterranei U32] gi|299795953|gb|ADJ46328.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] Length=144 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/122 (37%), Positives = 70/122 (58%), Gaps = 1/122 (0%) Query 4 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAE-GITMSAPYLSQLRSGNRTNPSGATMA 62 +FA RL L TV+PP R P++ E+ + + G+TMSA ++ QL G R +P + + Sbjct 6 SFAERLAHLIATVHPPDRKPYSYREIAHGVAEQTGVTMSATHVQQLAVGARKDPKRSHIQ 65 Query 63 ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID 122 ALA FF + YF DDE ++D++++ + RD R +AQRA L ++ V +D Sbjct 66 ALAQFFGVPVTYFFDDEVAGQVDQQVEDVVAWRDSEARNLAQRAMRLSPRDRETVTALLD 125 Query 123 EL 124 +L Sbjct 126 QL 127 >gi|290957694|ref|YP_003488876.1| secondary metabolite protein [Streptomyces scabiei 87.22] gi|260647220|emb|CBG70324.1| conserved secondary metabolite protein [Streptomyces scabiei 87.22] Length=165 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/136 (37%), Positives = 79/136 (59%), Gaps = 8/136 (5%) Query 4 TFAARLNRLFDTVYPPGRGP-HTSAEVIAALK----AEGITMSAPYLSQLRSGNRTNPSG 58 + A +LN LF+TV P G +T+AEV A++ +G+T+S +SQLRSG + NP+ Sbjct 22 SLADKLNHLFETVKNPATGKRYTNAEVSRAIREAGEVDGLTVSESAISQLRSGVKPNPTV 81 Query 59 ATMAALANFFRIKAAYFTDD---EYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQ 115 T+ ALA F + YF D E EK+ ++ + + D VR +A RA+GL + + + Sbjct 82 NTVEALARHFNVTPQYFFPDFDAEESEKIRASMELIAAVGDSKVRGLALRANGLSADSLK 141 Query 116 KVLDRIDELRRAEGID 131 + I++ RR EG+D Sbjct 142 MITTVIEQARRLEGLD 157 >gi|324999523|ref|ZP_08120635.1| hypothetical protein PseP1_12181 [Pseudonocardia sp. P1] Length=160 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 60/105 (58%), Gaps = 0/105 (0%) Query 2 STTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATM 61 + T RL RL TV+P RGP+T EV ++ G T+S YL QL +G R NPS + Sbjct 15 APTLGERLARLRTTVHPADRGPYTLEEVSEGIRLRGETISPAYLHQLETGRRPNPSLQKL 74 Query 62 AALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRA 106 A+ F+ + AY +D ++D+E+ L +RD GV+ IA RA Sbjct 75 EAIVGFYGVTLAYLFNDGVAAEIDEEIALLQAIRDQGVKDIAMRA 119 >gi|340527917|gb|AEK43122.1| hypothetical protein RAM_23210 [Amycolatopsis mediterranei S699] Length=144 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 44/122 (37%), Positives = 70/122 (58%), Gaps = 1/122 (0%) Query 4 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAE-GITMSAPYLSQLRSGNRTNPSGATMA 62 +FA RL L TV+PP R P++ E+ + + G+TMSA ++ QL G R +P + + Sbjct 6 SFAERLAHLIATVHPPDRKPYSYREIAHGVAEQTGVTMSAIHVQQLAVGARKDPKRSHIQ 65 Query 63 ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID 122 ALA FF + YF DDE ++D++++ + RD R +AQRA L ++ V +D Sbjct 66 ALAQFFGVPVTYFFDDEVAGQVDQQVEDVVAWRDSEARNLAQRAMRLSPRDRETVTALLD 125 Query 123 EL 124 +L Sbjct 126 QL 127 Lambda K H 0.320 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130990493970 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40