BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3849

Length=132
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|308369258|ref|ZP_07417080.2|  hypothetical protein TMBG_02391 ...   275    2e-72
gi|15610985|ref|NP_218366.1|  hypothetical protein Rv3849 [Mycoba...   274    3e-72
gi|15843480|ref|NP_338517.1|  hypothetical protein MT3964 [Mycoba...   272    1e-71
gi|342351034|pdb|3R1F|A  Chain A, Crystal Structure Of A Key Regu...   264    3e-69
gi|240168325|ref|ZP_04746984.1|  hypothetical protein MkanA1_0337...   244    3e-63
gi|118620035|ref|YP_908367.1|  hypothetical protein MUL_5021 [Myc...   240    7e-62
gi|15826914|ref|NP_301177.1|  hypothetical protein ML0069 [Mycoba...   232    1e-59
gi|342860101|ref|ZP_08716753.1|  hypothetical protein MCOL_14520 ...   230    4e-59
gi|296166978|ref|ZP_06849392.1|  conserved hypothetical protein [...   229    7e-59
gi|41406283|ref|NP_959119.1|  hypothetical protein MAP0185c [Myco...   227    5e-58
gi|254821458|ref|ZP_05226459.1|  hypothetical protein MintA_16100...   227    6e-58
gi|108802010|ref|YP_642207.1|  hypothetical protein Mmcs_5047 [My...   226    1e-57
gi|118473945|ref|YP_890644.1|  hypothetical protein MSMEG_6431 [M...   224    4e-57
gi|120406615|ref|YP_956444.1|  hypothetical protein Mvan_5673 [My...   221    3e-56
gi|169627220|ref|YP_001700869.1|  hypothetical protein MAB_0115c ...   221    3e-56
gi|333992801|ref|YP_004525415.1|  hypothetical protein JDM601_416...   215    1e-54
gi|289572107|ref|ZP_06452334.1|  conserved hypothetical protein [...   159    2e-37
gi|326384815|ref|ZP_08206491.1|  putative DNA-binding protein [Go...   141    4e-32
gi|54022483|ref|YP_116725.1|  putative DNA-binding protein [Nocar...   138    3e-31
gi|111022607|ref|YP_705579.1|  hypothetical protein RHA1_ro05642 ...   135    2e-30
gi|312138626|ref|YP_004005962.1|  hypothetical protein REQ_11790 ...   135    2e-30
gi|169627599|ref|YP_001701248.1|  hypothetical protein MAB_0495c ...   134    5e-30
gi|226307869|ref|YP_002767829.1|  hypothetical protein RER_43820 ...   132    3e-29
gi|318056885|ref|ZP_07975608.1|  hypothetical protein SSA3_03019 ...   115    3e-24
gi|337766807|emb|CCB75518.1|  conserved protein of unknown functi...   105    3e-21
gi|254386656|ref|ZP_05001952.1|  conserved hypothetical protein [...  98.2    3e-19
gi|111025462|ref|YP_707882.1|  hypothetical protein RHA1_ro08680 ...  94.7    4e-18
gi|302529612|ref|ZP_07281954.1|  hypothetical protein SSMG_05994 ...  94.0    6e-18
gi|333027613|ref|ZP_08455677.1|  hypothetical protein STTU_5117 [...  94.0    8e-18
gi|300783721|ref|YP_003764012.1|  hypothetical protein AMED_1799 ...  91.7    3e-17
gi|258652171|ref|YP_003201327.1|  XRE family transcriptional regu...  90.9    5e-17
gi|296141799|ref|YP_003649042.1|  DNA-binding protein [Tsukamurel...  90.5    8e-17
gi|297155188|gb|ADI04900.1|  hypothetical protein SBI_01779 [Stre...  89.4    2e-16
gi|345011354|ref|YP_004813708.1|  helix-turn-helix domain-contain...  87.8    5e-16
gi|345010870|ref|YP_004813224.1|  helix-turn-helix domain-contain...  87.8    5e-16
gi|337767278|emb|CCB75989.1|  Helix-turn-helix protein [Streptomy...  87.8    5e-16
gi|302547482|ref|ZP_07299824.1|  xre family toxin-antitoxin syste...  87.0    9e-16
gi|169630466|ref|YP_001704115.1|  hypothetical protein MAB_3385 [...  85.9    2e-15
gi|256398026|ref|YP_003119590.1|  hypothetical protein Caci_8936 ...  85.5    2e-15
gi|256392422|ref|YP_003113986.1|  hypothetical protein Caci_3238 ...  85.5    3e-15
gi|331699792|ref|YP_004336031.1|  hypothetical protein Psed_6070 ...  85.5    3e-15
gi|345007524|ref|YP_004800070.1|  hypothetical protein Strvi_9314...  85.1    3e-15
gi|271966412|ref|YP_003340608.1|  hypothetical protein Sros_5076 ...  84.3    6e-15
gi|159038649|ref|YP_001537902.1|  hypothetical protein Sare_3100 ...  84.3    6e-15
gi|297154444|gb|ADI04156.1|  hypothetical protein SBI_01035 [Stre...  82.8    1e-14
gi|302533076|ref|ZP_07285418.1|  predicted protein [Streptomyces ...  82.4    2e-14
gi|300786439|ref|YP_003766730.1|  hypothetical protein AMED_4558 ...  82.0    3e-14
gi|290957694|ref|YP_003488876.1|  secondary metabolite protein [S...  82.0    3e-14
gi|324999523|ref|ZP_08120635.1|  hypothetical protein PseP1_12181...  82.0    3e-14
gi|340527917|gb|AEK43122.1|  hypothetical protein RAM_23210 [Amyc...  81.6    4e-14


>gi|308369258|ref|ZP_07417080.2| hypothetical protein TMBG_02391 [Mycobacterium tuberculosis SUMu002]
 gi|308371527|ref|ZP_07425222.2| hypothetical protein TMDG_01808 [Mycobacterium tuberculosis SUMu004]
 gi|308373849|ref|ZP_07433822.2| hypothetical protein TMFG_02087 [Mycobacterium tuberculosis SUMu006]
 7 more sequence titles
 Length=137

 Score =  275 bits (703),  Expect = 2e-72, Method: Compositional matrix adjust.
 Identities = 132/132 (100%), Positives = 132/132 (100%), Gaps = 0/132 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT
Sbjct  6    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  65

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR
Sbjct  66   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  125

Query  121  IDELRRAEGIDA  132
            IDELRRAEGIDA
Sbjct  126  IDELRRAEGIDA  137


>gi|15610985|ref|NP_218366.1| hypothetical protein Rv3849 [Mycobacterium tuberculosis H37Rv]
 gi|31795023|ref|NP_857516.1| hypothetical protein Mb3879 [Mycobacterium bovis AF2122/97]
 gi|121639767|ref|YP_979991.1| hypothetical protein BCG_3912 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 67 more sequence titles
 Length=132

 Score =  274 bits (701),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 132/132 (100%), Positives = 132/132 (100%), Gaps = 0/132 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT
Sbjct  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR
Sbjct  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120

Query  121  IDELRRAEGIDA  132
            IDELRRAEGIDA
Sbjct  121  IDELRRAEGIDA  132


>gi|15843480|ref|NP_338517.1| hypothetical protein MT3964 [Mycobacterium tuberculosis CDC1551]
 gi|13883852|gb|AAK48331.1| hypothetical protein MT3964 [Mycobacterium tuberculosis CDC1551]
Length=132

 Score =  272 bits (695),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 131/132 (99%), Positives = 131/132 (99%), Gaps = 0/132 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQ RSGNRTNPSGAT
Sbjct  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQXRSGNRTNPSGAT  60

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR
Sbjct  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120

Query  121  IDELRRAEGIDA  132
            IDELRRAEGIDA
Sbjct  121  IDELRRAEGIDA  132


>gi|342351034|pdb|3R1F|A Chain A, Crystal Structure Of A Key Regulator Of Virulence In 
Mycobacterium Tuberculosis
 gi|342351035|pdb|3R1F|B Chain B, Crystal Structure Of A Key Regulator Of Virulence In 
Mycobacterium Tuberculosis
 gi|342351036|pdb|3R1F|C Chain C, Crystal Structure Of A Key Regulator Of Virulence In 
Mycobacterium Tuberculosis
 15 more sequence titles
 Length=135

 Score =  264 bits (675),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 128/131 (98%), Positives = 128/131 (98%), Gaps = 0/131 (0%)

Query  2    STTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATM  61
            STTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGIT SAPYLSQLRSGNRTNPSGAT 
Sbjct  5    STTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITXSAPYLSQLRSGNRTNPSGATX  64

Query  62   AALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRI  121
            AALANFFRIKAAYFTDDEYYEKLDKELQWLCT RDDGVRRIAQRAHGLPSAAQQKVLDRI
Sbjct  65   AALANFFRIKAAYFTDDEYYEKLDKELQWLCTXRDDGVRRIAQRAHGLPSAAQQKVLDRI  124

Query  122  DELRRAEGIDA  132
            DELRRAEGIDA
Sbjct  125  DELRRAEGIDA  135


>gi|240168325|ref|ZP_04746984.1| hypothetical protein MkanA1_03372 [Mycobacterium kansasii ATCC 
12478]
Length=132

 Score =  244 bits (623),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 115/132 (88%), Positives = 125/132 (95%), Gaps = 0/132 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPS AT
Sbjct  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSSAT  60

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            MAALANFFRI+AAYFTDD+YY K+DKELQWL  MRDDGVRRIA+R+HGL + AQQ+++DR
Sbjct  61   MAALANFFRIRAAYFTDDDYYAKIDKELQWLAAMRDDGVRRIAERSHGLSAQAQQEIVDR  120

Query  121  IDELRRAEGIDA  132
            IDELRRAE +DA
Sbjct  121  IDELRRAERLDA  132


>gi|118620035|ref|YP_908367.1| hypothetical protein MUL_5021 [Mycobacterium ulcerans Agy99]
 gi|183985368|ref|YP_001853659.1| hypothetical protein MMAR_5399 [Mycobacterium marinum M]
 gi|118572145|gb|ABL06896.1| conserved protein [Mycobacterium ulcerans Agy99]
 gi|183178694|gb|ACC43804.1| conserved protein [Mycobacterium marinum M]
Length=132

 Score =  240 bits (612),  Expect = 7e-62, Method: Compositional matrix adjust.
 Identities = 113/132 (86%), Positives = 123/132 (94%), Gaps = 0/132 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPS AT
Sbjct  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSTAT  60

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            MAALANFFRIK+AYFTDDEYYE LD+ELQWL TMRDDGVRRIA R+ GL + AQQ++++R
Sbjct  61   MAALANFFRIKSAYFTDDEYYENLDQELQWLATMRDDGVRRIAVRSQGLSTQAQQEIVER  120

Query  121  IDELRRAEGIDA  132
            I+ELRR E +DA
Sbjct  121  IEELRRTERLDA  132


>gi|15826914|ref|NP_301177.1| hypothetical protein ML0069 [Mycobacterium leprae TN]
 gi|221229392|ref|YP_002502808.1| hypothetical protein MLBr_00069 [Mycobacterium leprae Br4923]
 gi|13092461|emb|CAC29577.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932499|emb|CAR70162.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=132

 Score =  232 bits (592),  Expect = 1e-59, Method: Compositional matrix adjust.
 Identities = 110/131 (84%), Positives = 120/131 (92%), Gaps = 0/131 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPS AT
Sbjct  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSSAT  60

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            ++ALANFFRIK AYFT+DEYYEKLD+EL WL TMRD+GVRRIA R  GL + AQQ ++DR
Sbjct  61   ISALANFFRIKPAYFTNDEYYEKLDQELAWLATMRDEGVRRIAMRTIGLSAQAQQDIVDR  120

Query  121  IDELRRAEGID  131
            +DELRRAE +D
Sbjct  121  VDELRRAEHLD  131


>gi|342860101|ref|ZP_08716753.1| hypothetical protein MCOL_14520 [Mycobacterium colombiense CECT 
3035]
 gi|342132479|gb|EGT85708.1| hypothetical protein MCOL_14520 [Mycobacterium colombiense CECT 
3035]
Length=132

 Score =  230 bits (587),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 111/132 (85%), Positives = 119/132 (91%), Gaps = 0/132 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPS AT
Sbjct  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSTAT  60

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            MAALANFFRIK+AYFTDDEYYEKLDKEL WL T RDD VRRIA R   L   AQ++V++R
Sbjct  61   MAALANFFRIKSAYFTDDEYYEKLDKELSWLATTRDDNVRRIAVRTAELSPEAQREVMER  120

Query  121  IDELRRAEGIDA  132
            ++ELRRAE +DA
Sbjct  121  VNELRRAEHLDA  132


>gi|296166978|ref|ZP_06849392.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897658|gb|EFG77250.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=132

 Score =  229 bits (585),  Expect = 7e-59, Method: Compositional matrix adjust.
 Identities = 112/132 (85%), Positives = 119/132 (91%), Gaps = 0/132 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPS AT
Sbjct  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSSAT  60

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            MAALANFFRIK AYFTDDEYYEKLD+EL +L T+RDDGVRR+A RA  L   AQQ VL R
Sbjct  61   MAALANFFRIKPAYFTDDEYYEKLDQELSFLTTLRDDGVRRLALRAAELSPEAQQDVLQR  120

Query  121  IDELRRAEGIDA  132
            ++ELRRAE +DA
Sbjct  121  VNELRRAEHLDA  132


>gi|41406283|ref|NP_959119.1| hypothetical protein MAP0185c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118463431|ref|YP_879474.1| hypothetical protein MAV_0180 [Mycobacterium avium 104]
 gi|254773237|ref|ZP_05214753.1| hypothetical protein MaviaA2_00946 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41394631|gb|AAS02502.1| hypothetical protein MAP_0185c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118164718|gb|ABK65615.1| conserved hypothetical protein [Mycobacterium avium 104]
 gi|336461869|gb|EGO40724.1| Helix-turn-helix protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=132

 Score =  227 bits (578),  Expect = 5e-58, Method: Compositional matrix adjust.
 Identities = 110/132 (84%), Positives = 116/132 (88%), Gaps = 0/132 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPS AT
Sbjct  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSSAT  60

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            MAALANFFRIK AYFTDDEYYEKLD EL WL   RDD VRRIA R   L   AQ++V+DR
Sbjct  61   MAALANFFRIKPAYFTDDEYYEKLDAELSWLAMSRDDNVRRIAMRTAELSPEAQREVMDR  120

Query  121  IDELRRAEGIDA  132
            ++ELRRAE +DA
Sbjct  121  VNELRRAEHLDA  132


>gi|254821458|ref|ZP_05226459.1| hypothetical protein MintA_16100 [Mycobacterium intracellulare 
ATCC 13950]
Length=132

 Score =  227 bits (578),  Expect = 6e-58, Method: Compositional matrix adjust.
 Identities = 110/132 (84%), Positives = 117/132 (89%), Gaps = 0/132 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            MSTTFAARLNRLFDTVYPPGRG HTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPS AT
Sbjct  1    MSTTFAARLNRLFDTVYPPGRGAHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSSAT  60

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            MAALANFFRIK AYFTDDEYYEKLDKEL WL T RDD VRRIA R   L   AQ++V++R
Sbjct  61   MAALANFFRIKPAYFTDDEYYEKLDKELSWLATARDDNVRRIAMRTAELSPEAQREVMER  120

Query  121  IDELRRAEGIDA  132
            ++ELRRAE +DA
Sbjct  121  VNELRRAEHLDA  132


>gi|108802010|ref|YP_642207.1| hypothetical protein Mmcs_5047 [Mycobacterium sp. MCS]
 gi|119871162|ref|YP_941114.1| hypothetical protein Mkms_5135 [Mycobacterium sp. KMS]
 gi|126437989|ref|YP_001073680.1| hypothetical protein Mjls_5426 [Mycobacterium sp. JLS]
 gi|108772429|gb|ABG11151.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119697251|gb|ABL94324.1| conserved hypothetical protein [Mycobacterium sp. KMS]
 gi|126237789|gb|ABO01190.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=132

 Score =  226 bits (575),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 108/131 (83%), Positives = 114/131 (88%), Gaps = 0/131 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            MS TFAARLNRLFDTVYPPGRGPHTSAEVI ALKAEGITMSAPYLSQLRSGNRTNPS AT
Sbjct  1    MSKTFAARLNRLFDTVYPPGRGPHTSAEVIGALKAEGITMSAPYLSQLRSGNRTNPSQAT  60

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            MAALANFFRIK AYFTDDEYYEKLDKEL WL  MRD+GVRRIA R  GL   AQQ ++ +
Sbjct  61   MAALANFFRIKPAYFTDDEYYEKLDKELTWLANMRDEGVRRIAARTVGLSPEAQQDIVAK  120

Query  121  IDELRRAEGID  131
            +DELRR E +D
Sbjct  121  VDELRRKENLD  131


>gi|118473945|ref|YP_890644.1| hypothetical protein MSMEG_6431 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118175232|gb|ABK76128.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=142

 Score =  224 bits (570),  Expect = 4e-57, Method: Compositional matrix adjust.
 Identities = 107/132 (82%), Positives = 115/132 (88%), Gaps = 0/132 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            MS TFAARLNRLFDTVYPPGRGPHTSAEVIAALK+EGITMSAPYLSQLRSGNRTNPS AT
Sbjct  9    MSKTFAARLNRLFDTVYPPGRGPHTSAEVIAALKSEGITMSAPYLSQLRSGNRTNPSAAT  68

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            MAALANFFRIK AYFTDDEYYEKLDKEL WL  MRD+GVRRIA R  GL   AQQ ++ +
Sbjct  69   MAALANFFRIKPAYFTDDEYYEKLDKELTWLANMRDEGVRRIAARTVGLSPEAQQDLVQK  128

Query  121  IDELRRAEGIDA  132
             +ELRR E +D+
Sbjct  129  AEELRRREQLDS  140


>gi|120406615|ref|YP_956444.1| hypothetical protein Mvan_5673 [Mycobacterium vanbaalenii PYR-1]
 gi|145221725|ref|YP_001132403.1| hypothetical protein Mflv_1133 [Mycobacterium gilvum PYR-GCK]
 gi|315446539|ref|YP_004079418.1| hypothetical protein Mspyr1_50540 [Mycobacterium sp. Spyr1]
 gi|119959433|gb|ABM16438.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
 gi|145214211|gb|ABP43615.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
 gi|315264842|gb|ADU01584.1| hypothetical protein Mspyr1_50540 [Mycobacterium sp. Spyr1]
Length=132

 Score =  221 bits (563),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 106/131 (81%), Positives = 115/131 (88%), Gaps = 0/131 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            MS TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEG+TMSAPYLSQLRSGNRTNPS AT
Sbjct  1    MSNTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGVTMSAPYLSQLRSGNRTNPSVAT  60

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            MAALANFFRIK AYFTDDEYYEKLDKEL  L  MRD+GVRRIA R  GL + A+Q ++ +
Sbjct  61   MAALANFFRIKPAYFTDDEYYEKLDKELTLLAGMRDEGVRRIAARTVGLSAEAKQDIVQK  120

Query  121  IDELRRAEGID  131
            +DELRR E +D
Sbjct  121  VDELRRRENLD  131


>gi|169627220|ref|YP_001700869.1| hypothetical protein MAB_0115c [Mycobacterium abscessus ATCC 
19977]
 gi|169239187|emb|CAM60215.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=132

 Score =  221 bits (562),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 104/132 (79%), Positives = 113/132 (86%), Gaps = 0/132 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            MSTTF ARLNRLFDTVYPPGRGPHTSAEVIAAL++EGITMSAPYLSQLRSGNRTNPS AT
Sbjct  1    MSTTFTARLNRLFDTVYPPGRGPHTSAEVIAALRSEGITMSAPYLSQLRSGNRTNPSSAT  60

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            M ALANFFRIK AYFTDDEYYEKLD+EL WL  MRD+GVRRIA R  GL   AQ ++   
Sbjct  61   MKALANFFRIKPAYFTDDEYYEKLDQELTWLANMRDEGVRRIAARTVGLSVEAQDRITQT  120

Query  121  IDELRRAEGIDA  132
            +DE RR EG+D+
Sbjct  121  VDEYRRKEGLDS  132


>gi|333992801|ref|YP_004525415.1| hypothetical protein JDM601_4161 [Mycobacterium sp. JDM601]
 gi|333488769|gb|AEF38161.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=132

 Score =  215 bits (548),  Expect = 1e-54, Method: Compositional matrix adjust.
 Identities = 106/132 (81%), Positives = 112/132 (85%), Gaps = 0/132 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            MS TFA RLNRLFD VYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPS AT
Sbjct  1    MSATFAVRLNRLFDVVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSVAT  60

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            MAALANFFRIK A+FTDD+YY KLD EL WL ++RDDGVRRIA  A GL   AQ+ VL R
Sbjct  61   MAALANFFRIKPAFFTDDDYYAKLDAELTWLDSLRDDGVRRIATHAVGLSPEAQEDVLAR  120

Query  121  IDELRRAEGIDA  132
            IDELRR E + A
Sbjct  121  IDELRRKEHLSA  132


>gi|289572107|ref|ZP_06452334.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289545862|gb|EFD49509.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=77

 Score =  159 bits (401),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 77/77 (100%), Positives = 77/77 (100%), Gaps = 0/77 (0%)

Query  1   MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
           MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT
Sbjct  1   MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60

Query  61  MAALANFFRIKAAYFTD  77
           MAALANFFRIKAAYFTD
Sbjct  61  MAALANFFRIKAAYFTD  77


>gi|326384815|ref|ZP_08206491.1| putative DNA-binding protein [Gordonia neofelifaecis NRRL B-59395]
 gi|326196477|gb|EGD53675.1| putative DNA-binding protein [Gordonia neofelifaecis NRRL B-59395]
Length=136

 Score =  141 bits (355),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 68/130 (53%), Positives = 91/130 (70%), Gaps = 0/130 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            M   FA RLNRLF+TV+PPGR PHT+AEV A L A G  +S PYLSQLR+G+RTNPS  T
Sbjct  1    MDDGFAERLNRLFETVHPPGRKPHTNAEVAATLSAAGHKISKPYLSQLRNGHRTNPSPET  60

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            +AALA FF++K  YF DD Y  ++D +L+ L  +R  G+RR++ RA  L   +Q+ +   
Sbjct  61   VAALARFFKVKPDYFYDDVYAAQIDHDLELLSQLRGHGLRRLSSRAFDLSEESQEMLAAM  120

Query  121  IDELRRAEGI  130
             ++LRR EG+
Sbjct  121  AEKLRRGEGL  130


>gi|54022483|ref|YP_116725.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54013991|dbj|BAD55361.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
Length=138

 Score =  138 bits (347),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 67/126 (54%), Positives = 90/126 (72%), Gaps = 0/126 (0%)

Query  5    FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAAL  64
            FAARLN+LF+TV+PPGR PHT+AEV AAL A G  +S PYLSQLRSG RTNPS  T+AAL
Sbjct  4    FAARLNKLFETVHPPGRKPHTNAEVAAALTASGHPISKPYLSQLRSGQRTNPSDETVAAL  63

Query  65   ANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDEL  124
            A FF++K  YF +D Y  K+D +L+ L  ++  G+RR++ RA  L   +Q  +    ++L
Sbjct  64   AKFFKVKPDYFFNDIYAAKIDHDLELLSQLQGYGLRRLSSRAFDLSEESQNLLTSMAEKL  123

Query  125  RRAEGI  130
            R +EG+
Sbjct  124  RASEGL  129


>gi|111022607|ref|YP_705579.1| hypothetical protein RHA1_ro05642 [Rhodococcus jostii RHA1]
 gi|226365114|ref|YP_002782897.1| hypothetical protein ROP_57050 [Rhodococcus opacus B4]
 gi|110822137|gb|ABG97421.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
 gi|226243604|dbj|BAH53952.1| hypothetical protein [Rhodococcus opacus B4]
Length=138

 Score =  135 bits (341),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 65/126 (52%), Positives = 90/126 (72%), Gaps = 0/126 (0%)

Query  5    FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAAL  64
            FAARLN+LFDTV+PPGR PHT+AEV AAL A+G  +S PY+SQLRSG RTNPS  T+AA 
Sbjct  4    FAARLNKLFDTVHPPGRKPHTNAEVAAALIADGHQISKPYISQLRSGQRTNPSDETVAAF  63

Query  65   ANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDEL  124
            A FF++K  YF +D Y  K+D +L+ L  ++  G+R+++ RA  L   +Q  +    ++L
Sbjct  64   ARFFKVKPDYFFNDIYAAKIDHDLELLSQLQGYGLRKLSSRAFDLSEESQNLLTTMAEKL  123

Query  125  RRAEGI  130
            R +EG+
Sbjct  124  RASEGL  129


>gi|312138626|ref|YP_004005962.1| hypothetical protein REQ_11790 [Rhodococcus equi 103S]
 gi|325676307|ref|ZP_08155986.1| hypothetical protein HMPREF0724_13769 [Rhodococcus equi ATCC 
33707]
 gi|311887965|emb|CBH47277.1| conserved hypothetical protein [Rhodococcus equi 103S]
 gi|325552868|gb|EGD22551.1| hypothetical protein HMPREF0724_13769 [Rhodococcus equi ATCC 
33707]
Length=138

 Score =  135 bits (340),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 66/128 (52%), Positives = 91/128 (72%), Gaps = 0/128 (0%)

Query  3    TTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMA  62
            + FAARLN+LF+TV+PPGR PHT+AEV  AL A+G  +S PY+SQLRSG R+NPS  T+A
Sbjct  2    SDFAARLNKLFETVHPPGRKPHTNAEVANALIADGHKISKPYISQLRSGQRSNPSDETVA  61

Query  63   ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID  122
            A A FF++K AYF +D Y  K+D +L+ L  ++  G+RR+A RA  L   +Q  +    +
Sbjct  62   AFAKFFKVKPAYFFNDIYASKIDHDLELLNQLQGYGLRRLATRAFDLSEESQTLLTTLAE  121

Query  123  ELRRAEGI  130
            +LR AEG+
Sbjct  122  KLRAAEGL  129


>gi|169627599|ref|YP_001701248.1| hypothetical protein MAB_0495c [Mycobacterium abscessus ATCC 
19977]
 gi|169239566|emb|CAM60594.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=140

 Score =  134 bits (337),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 60/126 (48%), Positives = 87/126 (70%), Gaps = 0/126 (0%)

Query  5    FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAAL  64
            F+ RL+ LF TV+P GRGP++  EV+AAL   G+ +S+PYLS LR G R+NP+   + AL
Sbjct  4    FSKRLSHLFATVHPAGRGPYSLNEVVAALGKRGVEVSSPYLSLLRKGERSNPAPEIVTAL  63

Query  65   ANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDEL  124
            A FF++  AYF D +Y E ++++L WL  +RD  VR IAQR++ L   ++Q + D +D L
Sbjct  64   AEFFQVSPAYFYDADYAESVNRDLDWLVQLRDSKVREIAQRSYALSEHSRQAIADMVDHL  123

Query  125  RRAEGI  130
            R+ EGI
Sbjct  124  RKVEGI  129


>gi|226307869|ref|YP_002767829.1| hypothetical protein RER_43820 [Rhodococcus erythropolis PR4]
 gi|229494926|ref|ZP_04388677.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|226186986|dbj|BAH35090.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
 gi|229318150|gb|EEN84020.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=138

 Score =  132 bits (331),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 63/126 (50%), Positives = 88/126 (70%), Gaps = 0/126 (0%)

Query  5    FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAAL  64
            FA RLN+LFD+V+PPGR PHT+AEV AAL  +G  +S PY+SQLRSG RTNPS  T+AA 
Sbjct  4    FAERLNKLFDSVHPPGRKPHTNAEVAAALIEDGHQISKPYISQLRSGQRTNPSDETVAAF  63

Query  65   ANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDEL  124
            A FF++K  YF +D Y  K+D +L+ L  ++  G+RR++ RA  L   +Q  +    ++L
Sbjct  64   ARFFKVKPDYFFNDIYAAKIDHDLELLSQLQGYGLRRLSSRAFDLSEESQNLLTTMAEKL  123

Query  125  RRAEGI  130
            R +EG+
Sbjct  124  RASEGL  129


>gi|318056885|ref|ZP_07975608.1| hypothetical protein SSA3_03019 [Streptomyces sp. SA3_actG]
Length=153

 Score =  115 bits (287),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 60/128 (47%), Positives = 82/128 (65%), Gaps = 1/128 (0%)

Query  4    TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEG-ITMSAPYLSQLRSGNRTNPSGATMA  62
            +FA RL+ LF+TV+P GRGP+T  EV   +K +G  T+SA Y+ QLRSG R NP+   M 
Sbjct  11   SFAQRLDHLFETVHPKGRGPYTYEEVATGIKRQGGPTISASYIWQLRSGGRDNPTKRHME  70

Query  63   ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID  122
            AL+ FF +  AYF DD   +K+  E+  L  +RD+GVR +A RA GL S + Q + + ID
Sbjct  71   ALSAFFGVPVAYFFDDNTSKKIQAEIDALAVLRDNGVRSLALRASGLSSKSLQIIGEMID  130

Query  123  ELRRAEGI  130
              R  EG+
Sbjct  131  RTRELEGL  138


>gi|337766807|emb|CCB75518.1| conserved protein of unknown function [Streptomyces cattleya 
NRRL 8057]
Length=148

 Score =  105 bits (261),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 55/128 (43%), Positives = 79/128 (62%), Gaps = 1/128 (0%)

Query  4    TFAARLNRLFDTVYPPGRGPHTSAEVIAALK-AEGITMSAPYLSQLRSGNRTNPSGATMA  62
            TFA  L+ LF  V+P GRGP+T +EV   ++   G+T+SA  + QLR+G  TNP   T+ 
Sbjct  8    TFAELLDYLFREVHPKGRGPYTYSEVSQGIRDTSGVTISASAIQQLRTGTNTNPKMQTIR  67

Query  63   ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID  122
            ALA FF +   YF D+   E+   E+Q +  MRD  VRR+A RA+GL +++   +   ID
Sbjct  68   ALAGFFGVNPGYFFDEAEAERQRAEIQLVAAMRDQDVRRVALRANGLSTSSLHMLNTVID  127

Query  123  ELRRAEGI  130
            + RR EG+
Sbjct  128  QARRLEGM  135


>gi|254386656|ref|ZP_05001952.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194345497|gb|EDX26463.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length=151

 Score = 98.2 bits (243),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 53/133 (40%), Positives = 79/133 (60%), Gaps = 4/133 (3%)

Query  2    STTFAARLNRLFDTVYPPGRGPHTSAEVIAALK----AEGITMSAPYLSQLRSGNRTNPS  57
            S TFA  L+ LF  V+PP RGP+T AEV   ++     EG  ++A  + QLR+G + NP+
Sbjct  6    SPTFAQLLDHLFREVHPPSRGPYTYAEVAEGIRKAATGEGRGVTASAIQQLRTGAKRNPT  65

Query  58   GATMAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKV  117
              T+ ALA+FF + A YF D    E+   E+  L  MRD  VR++A RA+GL   + + +
Sbjct  66   RHTIKALADFFGVPAGYFVDSAAAERTKAEIGLLAAMRDQDVRKVALRANGLSVDSLKML  125

Query  118  LDRIDELRRAEGI  130
               I++ R+ EG+
Sbjct  126  STVIEQARKLEGL  138


>gi|111025462|ref|YP_707882.1| hypothetical protein RHA1_ro08680 [Rhodococcus jostii RHA1]
 gi|110824441|gb|ABG99724.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=114

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 45/107 (43%), Positives = 68/107 (64%), Gaps = 0/107 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGAT  60
            MS +FA RL  LFDTV+P GRGP++ AEV+ A++A G  M+  Y+SQL SG R++PS  T
Sbjct  1    MSESFAERLRHLFDTVHPKGRGPYSQAEVVEAIRAAGGNMTPGYMSQLLSGKRSSPSWTT  60

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAH  107
            +  +   F +   YF DD+ YE++   + ++  +RD   + IA R +
Sbjct  61   LRDICRVFAVPMDYFNDDDVYEEIKGYIAYIQDLRDAEDQNIAARTY  107


>gi|302529612|ref|ZP_07281954.1| hypothetical protein SSMG_05994 [Streptomyces sp. AA4]
 gi|302438507|gb|EFL10323.1| hypothetical protein SSMG_05994 [Streptomyces sp. AA4]
Length=149

 Score = 94.0 bits (232),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 57/129 (45%), Positives = 76/129 (59%), Gaps = 3/129 (2%)

Query  4    TFAARLNRLFDTVYPPGRGPHTSAEVIAALK--AEGITMSAPYLSQLRSGNRTNPSGATM  61
            T A+RL+ LF TV P GR   T+AEV A LK     + + A YLSQLR+G RTNPS   +
Sbjct  13   TLASRLDDLFRTVRPQGRH-WTNAEVAAELKRATPELKVGAVYLSQLRTGKRTNPSQELL  71

Query  62   AALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRI  121
            AALA FF +  AYF DD+    +  EL  +  MR  GVR +A RA G+     Q +   +
Sbjct  72   AALAKFFGVSVAYFFDDDVAGSVLSELAAVEAMRQAGVRAVAMRAAGMREENLQAITTIM  131

Query  122  DELRRAEGI  130
            D+ R+ +G+
Sbjct  132  DQYRKMQGL  140


>gi|333027613|ref|ZP_08455677.1| hypothetical protein STTU_5117 [Streptomyces sp. Tu6071]
 gi|332747465|gb|EGJ77906.1| hypothetical protein STTU_5117 [Streptomyces sp. Tu6071]
Length=148

 Score = 94.0 bits (232),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 55/128 (43%), Positives = 81/128 (64%), Gaps = 1/128 (0%)

Query  4    TFAARLNRLFDTVYPPGRGPHTSAEVIAALK-AEGITMSAPYLSQLRSGNRTNPSGATMA  62
            +FA  L+ LF  V+P GRGP+T AEV   ++ +  I +SA  + QLR+G  TNP   T+ 
Sbjct  9    SFAELLDYLFREVHPKGRGPYTYAEVSQRIRESSDIAISASAIQQLRTGINTNPKMQTIR  68

Query  63   ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID  122
            +LA+FF +  AYF D+E  E+   E+Q L  MRD  VR +A RA+GL +++ Q +   ID
Sbjct  69   SLASFFGVSPAYFFDEEEAERQRAEIQVLAAMRDRDVRNVALRANGLSASSLQMLATVID  128

Query  123  ELRRAEGI  130
            + R+ EG+
Sbjct  129  QARKLEGM  136


>gi|300783721|ref|YP_003764012.1| hypothetical protein AMED_1799 [Amycolatopsis mediterranei U32]
 gi|299793235|gb|ADJ43610.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
 gi|340525111|gb|AEK40316.1| hypothetical protein RAM_09130 [Amycolatopsis mediterranei S699]
Length=144

 Score = 91.7 bits (226),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 54/127 (43%), Positives = 73/127 (58%), Gaps = 1/127 (0%)

Query  3    TTFAARLNRLFDTVYPPGRGPHTSAEVIAALK-AEGITMSAPYLSQLRSGNRTNPSGATM  61
            +T A +++RLF  V  P R P+++ EV  A + A G + S  YL QLR+G R NP+   +
Sbjct  8    STLADKIDRLFHVVRRPDREPYSNEEVAKACREATGESFSTTYLWQLRTGRRDNPTKRHL  67

Query  62   AALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRI  121
             ALA FF +  AYF DDE   K+ +EL  L  +RD GVR +A RA  L S     + D I
Sbjct  68   EALAQFFGVPPAYFFDDEQSRKIAEELALLGALRDAGVRDLALRAVTLSSDGLDTISDMI  127

Query  122  DELRRAE  128
            D + R E
Sbjct  128  DAIARRE  134


>gi|258652171|ref|YP_003201327.1| XRE family transcriptional regulator [Nakamurella multipartita 
DSM 44233]
 gi|258555396|gb|ACV78338.1| putative transcriptional regulator, XRE family [Nakamurella multipartita 
DSM 44233]
Length=156

 Score = 90.9 bits (224),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 52/125 (42%), Positives = 72/125 (58%), Gaps = 1/125 (0%)

Query  5    FAARLNRLFDTV-YPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAA  63
             A RL+ LF TV  P GRG  ++ +    L  +G  MSA YLSQLR+G R NPS   + A
Sbjct  11   LAERLDHLFRTVPRPGGRGLWSNEQASVELARQGTPMSAAYLSQLRNGKRDNPSARHLNA  70

Query  64   LANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDE  123
            LA+ F +  +YF D +  +K++ +L+ L  +RD  V+ IA RAHGL       V   ID 
Sbjct  71   LASLFAVPISYFFDSDTADKINNDLRLLSAIRDSDVQAIALRAHGLSPDGLASVKGIIDH  130

Query  124  LRRAE  128
            +R+ E
Sbjct  131  IRKVE  135


>gi|296141799|ref|YP_003649042.1| DNA-binding protein [Tsukamurella paurometabola DSM 20162]
 gi|296029933|gb|ADG80703.1| putative DNA-binding protein [Tsukamurella paurometabola DSM 
20162]
Length=134

 Score = 90.5 bits (223),  Expect = 8e-17, Method: Compositional matrix adjust.
 Identities = 44/107 (42%), Positives = 70/107 (66%), Gaps = 0/107 (0%)

Query  3    TTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMA  62
            TTFAA+LNRLF+ V+P  RGP+TS+E    ++  G  +S PYLSQLRSG  + P+   +A
Sbjct  2    TTFAAKLNRLFEVVHPADRGPYTSSEFCRMVEESGGKLSVPYLSQLRSGRSSRPAYDMVA  61

Query  63   ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGL  109
            ++A  F ++A YF+D  Y  ++  +L+    +R+ G+  +A+R+  L
Sbjct  62   SIAQTFGVRAEYFSDPLYEREVLADLELTRELRESGMLEMARRSVKL  108


>gi|297155188|gb|ADI04900.1| hypothetical protein SBI_01779 [Streptomyces bingchenggensis 
BCW-1]
Length=175

 Score = 89.4 bits (220),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 51/131 (39%), Positives = 75/131 (58%), Gaps = 8/131 (6%)

Query  3    TTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAE----GITMSAPYLSQLRSGNRTNPSG  58
            +  A RLN LF T++PPG  P+T+A V  A+       G++++  YLS LR+G RTNPS 
Sbjct  14   SPLARRLNYLFATMHPPG-APYTNAHVAEAISGGDEYGGVSLTEQYLSMLRNGKRTNPSP  72

Query  59   ATMAALANFFRIKAAYFTDD---EYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQ  115
              + ALA FF +   Y   D      E++++E+++L  MRD  VR IA R+ GLP   Q 
Sbjct  73   DVLRALAKFFAVPVGYLLGDLSPSQAERVEEEVRFLVAMRDKRVRGIALRSVGLPPEVQD  132

Query  116  KVLDRIDELRR  126
             +   I + R+
Sbjct  133  SLAAIISQFRQ  143


>gi|345011354|ref|YP_004813708.1| helix-turn-helix domain-containing protein [Streptomyces violaceusniger 
Tu 4113]
 gi|344037703|gb|AEM83428.1| helix-turn-helix domain protein [Streptomyces violaceusniger 
Tu 4113]
Length=175

 Score = 87.8 bits (216),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 50/131 (39%), Positives = 75/131 (58%), Gaps = 8/131 (6%)

Query  3    TTFAARLNRLFDTVYPPGRGPHTSA----EVIAALKAEGITMSAPYLSQLRSGNRTNPSG  58
            +  A RLN LF T++PPG  P+T+A    E+    +  G++++  YLS LR+G RTNPS 
Sbjct  14   SPLADRLNYLFTTMHPPG-APYTNAYVAEEISGGEEYGGVSVTEQYLSMLRNGKRTNPSP  72

Query  59   ATMAALANFFRIKAAYFTDD---EYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQ  115
              + ALA FF +   Y   D      E++++E+++L  MRD  VR IA R+ GLP   Q 
Sbjct  73   DVLRALAKFFAVPVGYLLGDLSPSQAERVEEEVRFLVAMRDKRVRSIALRSVGLPPEVQD  132

Query  116  KVLDRIDELRR  126
             +   I + R+
Sbjct  133  SLTTIISQFRQ  143


>gi|345010870|ref|YP_004813224.1| helix-turn-helix domain-containing protein [Streptomyces violaceusniger 
Tu 4113]
 gi|344037219|gb|AEM82944.1| helix-turn-helix domain protein [Streptomyces violaceusniger 
Tu 4113]
Length=146

 Score = 87.8 bits (216),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 51/129 (40%), Positives = 74/129 (58%), Gaps = 3/129 (2%)

Query  4    TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEG--ITMSAPYLSQLRSGNRTNPSGATM  61
            T A RL+ LF TV P G+   T+AEV   LK     + +   YLSQLR+G R+NPS   +
Sbjct  9    TLAVRLDNLFKTVRPKGKH-WTNAEVAEELKRANPELKVGGVYLSQLRTGKRSNPSPDLL  67

Query  62   AALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRI  121
            AALA FF +  AYF DD+  E +  E+  +  +R  GVR +A RA G+     + +   +
Sbjct  68   AALARFFGVSVAYFFDDQVAESVLSEVAAIEALRQAGVRAVAMRAAGMKKENLEAITTIM  127

Query  122  DELRRAEGI  130
            D+ R+ +G+
Sbjct  128  DQYRQLQGL  136


>gi|337767278|emb|CCB75989.1| Helix-turn-helix protein [Streptomyces cattleya NRRL 8057]
Length=146

 Score = 87.8 bits (216),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 52/128 (41%), Positives = 74/128 (58%), Gaps = 3/128 (2%)

Query  5    FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEG--ITMSAPYLSQLRSGNRTNPSGATMA  62
             A RL+ LF TV P G+   T+AEV   LK     + +   YLSQLR+G R+NPS   +A
Sbjct  10   LAVRLDNLFKTVRPKGKH-WTNAEVAEELKRANPDLRVGGVYLSQLRTGKRSNPSPDLLA  68

Query  63   ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID  122
            ALA FF +  AYF DD+  E +  E+  +  +R  GVR +A RA G+ S   Q +   +D
Sbjct  69   ALARFFGVSVAYFFDDKVAESVLSEVAAIEALRQAGVRAVAMRAAGMKSENLQAITAIMD  128

Query  123  ELRRAEGI  130
            + R+ +G+
Sbjct  129  QYRQMQGL  136


>gi|302547482|ref|ZP_07299824.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces 
hygroscopicus ATCC 53653]
 gi|302465100|gb|EFL28193.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces 
himastatinicus ATCC 53653]
Length=160

 Score = 87.0 bits (214),  Expect = 9e-16, Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 74/130 (57%), Gaps = 5/130 (3%)

Query  4    TFAARLNRLFDTVYPPGRGPH-TSAEVIAALKAEG--ITMSAPYLSQLRSGNRTNPSGAT  60
              A RL+ LF TV P G+  H T+AEV   LK     + +   YLSQLR+G R+NPS   
Sbjct  15   VLAVRLDNLFKTVRPKGK--HWTNAEVAEELKRANPELKVGGVYLSQLRTGKRSNPSPDL  72

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            +AALA FF +  AYF DD+  E +  E+  +  +R  GVR +A RA G+     Q +   
Sbjct  73   LAALARFFGVSVAYFFDDKVAESVLSEVAAIEALRQAGVRAVAMRAAGMKKENLQAITTI  132

Query  121  IDELRRAEGI  130
            +D+ R+ +G+
Sbjct  133  MDQYRQMQGL  142


>gi|169630466|ref|YP_001704115.1| hypothetical protein MAB_3385 [Mycobacterium abscessus ATCC 19977]
 gi|169242433|emb|CAM63461.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=248

 Score = 85.9 bits (211),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 40/114 (36%), Positives = 67/114 (59%), Gaps = 0/114 (0%)

Query  5    FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAAL  64
            F +RLNR+F  ++ PGRGP++++E +  ++  G  +SAPYLSQLR+G R  PS   + ++
Sbjct  120  FVSRLNRVFAVLHSPGRGPYSNSEFLVFMRTGGTVVSAPYLSQLRNGQRGRPSLQALESI  179

Query  65   ANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVL  118
            A+ FRI   YF D  Y ++L+ +L  L    +     +  +   LP   + ++L
Sbjct  180  AHAFRIDVRYFIDSGYADELESDLSALELAHNPAAAELTSKLLELPEPVRDQLL  233


>gi|256398026|ref|YP_003119590.1| hypothetical protein Caci_8936 [Catenulispora acidiphila DSM 
44928]
 gi|256364252|gb|ACU77749.1| conserved hypothetical protein [Catenulispora acidiphila DSM 
44928]
Length=154

 Score = 85.5 bits (210),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 46/130 (36%), Positives = 74/130 (57%), Gaps = 3/130 (2%)

Query  4    TFAARLNRLFDTVYPPGRG-PHTSAEVIAALKAEG--ITMSAPYLSQLRSGNRTNPSGAT  60
              A R+  LF TVYP   G P+T  E +  + A+     +S  YLSQLR+G++ +P+   
Sbjct  13   VIAKRIEHLFTTVYPGSLGRPYTLREAVEKINADAGENLISVAYLSQLRNGDKRHPAFDK  72

Query  61   MAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDR  120
            +A +A  F +   YF DDE   + D++L  +  MR+ GV R+A R+ GL + + + +L  
Sbjct  73   LAGVAKLFGVSTDYFLDDETAARTDQQLALVAAMREQGVDRLATRSLGLSANSLEAILGM  132

Query  121  IDELRRAEGI  130
            I+  R+ EG+
Sbjct  133  IENARKIEGL  142


>gi|256392422|ref|YP_003113986.1| hypothetical protein Caci_3238 [Catenulispora acidiphila DSM 
44928]
 gi|256358648|gb|ACU72145.1| conserved hypothetical protein [Catenulispora acidiphila DSM 
44928]
Length=152

 Score = 85.5 bits (210),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 52/126 (42%), Positives = 70/126 (56%), Gaps = 1/126 (0%)

Query  4    TFAARLNRLFDTVYPPGRGPHTSAEVIAALK-AEGITMSAPYLSQLRSGNRTNPSGATMA  62
            T A +++ LF TV  P R   ++ EV  A + A G + SA YL QLR+G R NP+   + 
Sbjct  11   TLAEKIDILFQTVRRPNRELFSNDEVATACREATGESFSATYLWQLRTGRRDNPTMRHLE  70

Query  63   ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID  122
            ALA FF +  AYF DD+    + +EL+ L  +RD GVR +A RA  L       + D ID
Sbjct  71   ALAQFFEVPVAYFFDDDQSSAIARELELLGVLRDAGVRNVALRALTLSPEGIDTLNDMID  130

Query  123  ELRRAE  128
             L R E
Sbjct  131  VLVRHE  136


>gi|331699792|ref|YP_004336031.1| hypothetical protein Psed_6070 [Pseudonocardia dioxanivorans 
CB1190]
 gi|326954481|gb|AEA28178.1| hypothetical protein Psed_6070 [Pseudonocardia dioxanivorans 
CB1190]
Length=166

 Score = 85.5 bits (210),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 48/126 (39%), Positives = 70/126 (56%), Gaps = 0/126 (0%)

Query  4    TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAA  63
            +   RLN LF+TV+PPGR P+++AEV   + A G  +SA Y+ ++ +G R  PS   +  
Sbjct  32   SIPERLNYLFETVHPPGRKPYSAAEVARWINANGGKISAVYILKILNGERETPSHRYLKQ  91

Query  64   LANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDE  123
            +A FF +    F DD+  E   + L     +RDD V+ +  RA  L   +Q  + D ID 
Sbjct  92   IAQFFGVSLGVFYDDDPPELDAEALHTQIALRDDKVQSMMLRASRLSPRSQDAISDIIDN  151

Query  124  LRRAEG  129
            L RAEG
Sbjct  152  LLRAEG  157


>gi|345007524|ref|YP_004800070.1| hypothetical protein Strvi_9314 [Streptomyces violaceusniger 
Tu 4113]
 gi|344042863|gb|AEM88587.1| hypothetical protein Strvi_9314 [Streptomyces violaceusniger 
Tu 4113]
Length=140

 Score = 85.1 bits (209),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 49/125 (40%), Positives = 71/125 (57%), Gaps = 2/125 (1%)

Query  4    TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEG-ITMSAPYLSQLRSGNRTNPSGATMA  62
            TF+ RLNRLF+ V+P  RGP+++ EV   L   G  T+S  YL QLR+G R NP+   + 
Sbjct  3    TFSERLNRLFEVVHPQDRGPYSNQEVAKLLHERGGPTLSHVYLWQLRTGRRDNPTRRHLE  62

Query  63   ALANFFRIKAAYFTDDEYYEKLDKELQ-WLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRI  121
            ALA FF +  AYF DD    +++  +  W     +  V++IA RA  L    Q  VL  +
Sbjct  63   ALAEFFGVPVAYFFDDGIALQVESAIALWQGLRNNQQVQKIAMRAAHLTPEGQAAVLGVV  122

Query  122  DELRR  126
            +++ R
Sbjct  123  EQILR  127


>gi|271966412|ref|YP_003340608.1| hypothetical protein Sros_5076 [Streptosporangium roseum DSM 
43021]
 gi|270509587|gb|ACZ87865.1| hypothetical protein Sros_5076 [Streptosporangium roseum DSM 
43021]
Length=154

 Score = 84.3 bits (207),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 51/129 (40%), Positives = 70/129 (55%), Gaps = 1/129 (0%)

Query  1    MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALK-AEGITMSAPYLSQLRSGNRTNPSGA  59
            ++ T + R++ LF  V  P    H+  EV  A + + G T SA YL QLR+G R NP+  
Sbjct  10   VAGTLSDRIDHLFQVVRRPNGEQHSHEEVAKACRESTGETFSATYLWQLRTGRRDNPTKR  69

Query  60   TMAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLD  119
             + ALA FF++  AYF DDE    + KEL+ L  +R+  VR +A RA  L       V D
Sbjct  70   HLEALAAFFQVPPAYFFDDEQGAVIAKELELLGALRNSAVRDVALRAVNLSEEGLGTVAD  129

Query  120  RIDELRRAE  128
             ID + R E
Sbjct  130  IIDAIERRE  138


>gi|159038649|ref|YP_001537902.1| hypothetical protein Sare_3100 [Salinispora arenicola CNS-205]
 gi|157917484|gb|ABV98911.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
Length=149

 Score = 84.3 bits (207),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 51/128 (40%), Positives = 81/128 (64%), Gaps = 1/128 (0%)

Query  4    TFAARLNRLFDTVYPPGRGPHTSAEVIAA-LKAEGITMSAPYLSQLRSGNRTNPSGATMA  62
            +FA RLN LF+ V       +++ EV AA L+ +G+T+SA YL  LR+G R NP+   + 
Sbjct  7    SFADRLNYLFEVVTKSDCRRYSNEEVAAAILQDQGVTISASYLWYLRTGQRDNPTVRHLH  66

Query  63   ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID  122
            ALA+FF +  AYF +D   ++++ EL     +RD GVR +A RA+GL + + + + D I+
Sbjct  67   ALASFFGVPPAYFVEDAADKRVEAELAVAAAIRDVGVRTVALRANGLSAKSLETIRDVIE  126

Query  123  ELRRAEGI  130
             +R+ EG+
Sbjct  127  RVRQLEGL  134


>gi|297154444|gb|ADI04156.1| hypothetical protein SBI_01035 [Streptomyces bingchenggensis 
BCW-1]
Length=156

 Score = 82.8 bits (203),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 49/121 (41%), Positives = 68/121 (57%), Gaps = 1/121 (0%)

Query  3    TTFAARLNRLFDTVYPPGRGPHTSAEVIAALK-AEGITMSAPYLSQLRSGNRTNPSGATM  61
            +  A +++ LF  V  P R  ++  EV  A + A G T SA YL QLR+G R NP+   +
Sbjct  9    SVLADKIDTLFKVVRRPDRQQYSHEEVARACREATGETFSATYLWQLRTGRRDNPTKRHL  68

Query  62   AALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRI  121
             ALA FF++  AYF DDE   ++ +EL+ L  +RD GVR +A RA  L       + D I
Sbjct  69   EALAQFFQVPPAYFFDDEQGAEIARELELLGALRDAGVRDVALRAVNLSPEGLGTISDVI  128

Query  122  D  122
            D
Sbjct  129  D  129


>gi|302533076|ref|ZP_07285418.1| predicted protein [Streptomyces sp. C]
 gi|302441971|gb|EFL13787.1| predicted protein [Streptomyces sp. C]
Length=150

 Score = 82.4 bits (202),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 49/128 (39%), Positives = 72/128 (57%), Gaps = 3/128 (2%)

Query  5    FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEG--ITMSAPYLSQLRSGNRTNPSGATMA  62
             A RL+ LF TV P G+   T+AEV   LK     + +   YLSQLR+G R+NPS   +A
Sbjct  14   LATRLDDLFKTVRPKGKH-WTNAEVAEELKRANPELKVGGVYLSQLRTGKRSNPSPDLLA  72

Query  63   ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID  122
            ALA FF +  AYF DD+  E +  ++  +  +R  GVR +A RA G+       +   +D
Sbjct  73   ALARFFGVSVAYFFDDKVAESVLSQVAAIEALRQSGVRAVAMRAAGMKKENLAAITAIMD  132

Query  123  ELRRAEGI  130
            + R+ +G+
Sbjct  133  QYRQLQGL  140


>gi|300786439|ref|YP_003766730.1| hypothetical protein AMED_4558 [Amycolatopsis mediterranei U32]
 gi|299795953|gb|ADJ46328.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
Length=144

 Score = 82.0 bits (201),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 44/122 (37%), Positives = 70/122 (58%), Gaps = 1/122 (0%)

Query  4    TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAE-GITMSAPYLSQLRSGNRTNPSGATMA  62
            +FA RL  L  TV+PP R P++  E+   +  + G+TMSA ++ QL  G R +P  + + 
Sbjct  6    SFAERLAHLIATVHPPDRKPYSYREIAHGVAEQTGVTMSATHVQQLAVGARKDPKRSHIQ  65

Query  63   ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID  122
            ALA FF +   YF DDE   ++D++++ +   RD   R +AQRA  L    ++ V   +D
Sbjct  66   ALAQFFGVPVTYFFDDEVAGQVDQQVEDVVAWRDSEARNLAQRAMRLSPRDRETVTALLD  125

Query  123  EL  124
            +L
Sbjct  126  QL  127


>gi|290957694|ref|YP_003488876.1| secondary metabolite protein [Streptomyces scabiei 87.22]
 gi|260647220|emb|CBG70324.1| conserved secondary metabolite protein [Streptomyces scabiei 
87.22]
Length=165

 Score = 82.0 bits (201),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 50/136 (37%), Positives = 79/136 (59%), Gaps = 8/136 (5%)

Query  4    TFAARLNRLFDTVYPPGRGP-HTSAEVIAALK----AEGITMSAPYLSQLRSGNRTNPSG  58
            + A +LN LF+TV  P  G  +T+AEV  A++     +G+T+S   +SQLRSG + NP+ 
Sbjct  22   SLADKLNHLFETVKNPATGKRYTNAEVSRAIREAGEVDGLTVSESAISQLRSGVKPNPTV  81

Query  59   ATMAALANFFRIKAAYFTDD---EYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQ  115
             T+ ALA  F +   YF  D   E  EK+   ++ +  + D  VR +A RA+GL + + +
Sbjct  82   NTVEALARHFNVTPQYFFPDFDAEESEKIRASMELIAAVGDSKVRGLALRANGLSADSLK  141

Query  116  KVLDRIDELRRAEGID  131
             +   I++ RR EG+D
Sbjct  142  MITTVIEQARRLEGLD  157


>gi|324999523|ref|ZP_08120635.1| hypothetical protein PseP1_12181 [Pseudonocardia sp. P1]
Length=160

 Score = 82.0 bits (201),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 60/105 (58%), Gaps = 0/105 (0%)

Query  2    STTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATM  61
            + T   RL RL  TV+P  RGP+T  EV   ++  G T+S  YL QL +G R NPS   +
Sbjct  15   APTLGERLARLRTTVHPADRGPYTLEEVSEGIRLRGETISPAYLHQLETGRRPNPSLQKL  74

Query  62   AALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRA  106
             A+  F+ +  AY  +D    ++D+E+  L  +RD GV+ IA RA
Sbjct  75   EAIVGFYGVTLAYLFNDGVAAEIDEEIALLQAIRDQGVKDIAMRA  119


>gi|340527917|gb|AEK43122.1| hypothetical protein RAM_23210 [Amycolatopsis mediterranei S699]
Length=144

 Score = 81.6 bits (200),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 44/122 (37%), Positives = 70/122 (58%), Gaps = 1/122 (0%)

Query  4    TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAE-GITMSAPYLSQLRSGNRTNPSGATMA  62
            +FA RL  L  TV+PP R P++  E+   +  + G+TMSA ++ QL  G R +P  + + 
Sbjct  6    SFAERLAHLIATVHPPDRKPYSYREIAHGVAEQTGVTMSAIHVQQLAVGARKDPKRSHIQ  65

Query  63   ALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRID  122
            ALA FF +   YF DDE   ++D++++ +   RD   R +AQRA  L    ++ V   +D
Sbjct  66   ALAQFFGVPVTYFFDDEVAGQVDQQVEDVVAWRDSEARNLAQRAMRLSPRDRETVTALLD  125

Query  123  EL  124
            +L
Sbjct  126  QL  127



Lambda     K      H
   0.320    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130990493970


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40