BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3851

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610987|ref|NP_218368.1|  hypothetical protein Rv3851 [Mycoba...   178    3e-43
gi|254548857|ref|ZP_05139304.1|  hypothetical protein Mtube_00050...   169    2e-40


>gi|15610987|ref|NP_218368.1| hypothetical protein Rv3851 [Mycobacterium tuberculosis H37Rv]
 gi|15843482|ref|NP_338519.1| hypothetical protein MT3966 [Mycobacterium tuberculosis CDC1551]
 gi|31795025|ref|NP_857518.1| hypothetical protein Mb3881 [Mycobacterium bovis AF2122/97]
 58 more sequence titles
 Length=94

 Score =  178 bits (451),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 94/94 (100%), Positives = 94/94 (100%), Gaps = 0/94 (0%)

Query  1   MTAIGMSHPPRVHRRVGGQRTALTAGIGLLLAALVLTTIANPPAAFAHTAQLSTATPAPA  60
           MTAIGMSHPPRVHRRVGGQRTALTAGIGLLLAALVLTTIANPPAAFAHTAQLSTATPAPA
Sbjct  1   MTAIGMSHPPRVHRRVGGQRTALTAGIGLLLAALVLTTIANPPAAFAHTAQLSTATPAPA  60

Query  61  VAATDANDVPTWPFVVGTVAAVAVAALWAVRRGR  94
           VAATDANDVPTWPFVVGTVAAVAVAALWAVRRGR
Sbjct  61  VAATDANDVPTWPFVVGTVAAVAVAALWAVRRGR  94


>gi|254548857|ref|ZP_05139304.1| hypothetical protein Mtube_00050 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|297733532|ref|ZP_06962650.1| hypothetical protein MtubKR_20675 [Mycobacterium tuberculosis 
KZN R506]
Length=89

 Score =  169 bits (427),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 89/89 (100%), Positives = 89/89 (100%), Gaps = 0/89 (0%)

Query  6   MSHPPRVHRRVGGQRTALTAGIGLLLAALVLTTIANPPAAFAHTAQLSTATPAPAVAATD  65
           MSHPPRVHRRVGGQRTALTAGIGLLLAALVLTTIANPPAAFAHTAQLSTATPAPAVAATD
Sbjct  1   MSHPPRVHRRVGGQRTALTAGIGLLLAALVLTTIANPPAAFAHTAQLSTATPAPAVAATD  60

Query  66  ANDVPTWPFVVGTVAAVAVAALWAVRRGR  94
           ANDVPTWPFVVGTVAAVAVAALWAVRRGR
Sbjct  61  ANDVPTWPFVVGTVAAVAVAALWAVRRGR  89



Lambda     K      H
   0.322    0.130    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127354591080


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40