BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3853
Length=157
Score E
Sequences producing significant alignments: (Bits) Value
gi|34810988|pdb|1NXJ|A Chain A, Structure Of Rv3853 From Mycobac... 309 8e-83
gi|15610989|ref|NP_218370.1| ribonuclease activity regulator pro... 307 3e-82
gi|118620039|ref|YP_908371.1| ribonuclease activity regulator pr... 289 9e-77
gi|183985372|ref|YP_001853663.1| s-adenosylmethionine:2-demethyl... 288 2e-76
gi|240168329|ref|ZP_04746988.1| ribonuclease activity regulator ... 283 5e-75
gi|296166983|ref|ZP_06849397.1| S-adenosylmethionine:2-demethylm... 282 1e-74
gi|254821454|ref|ZP_05226455.1| ribonuclease activity regulator ... 277 4e-73
gi|342860106|ref|ZP_08716758.1| ribonuclease activity regulator ... 276 1e-72
gi|15826911|ref|NP_301174.1| ribonuclease activity regulator pro... 271 2e-71
gi|333992806|ref|YP_004525420.1| s-adenosylmethionine:2-demethyl... 264 3e-69
gi|118463623|ref|YP_879469.1| ribonuclease activity regulator pr... 261 2e-68
gi|254773232|ref|ZP_05214748.1| ribonuclease activity regulator ... 259 6e-68
gi|41406279|ref|NP_959115.1| ribonuclease activity regulator pro... 259 7e-68
gi|145221716|ref|YP_001132394.1| ribonuclease activity regulator... 250 4e-65
gi|126437998|ref|YP_001073689.1| ribonuclease activity regulator... 249 7e-65
gi|315446548|ref|YP_004079427.1| RraA family protein [Mycobacter... 249 7e-65
gi|120406624|ref|YP_956453.1| ribonuclease activity regulator pr... 249 8e-65
gi|108802019|ref|YP_642216.1| ribonuclease activity regulator pr... 247 4e-64
gi|118469646|ref|YP_890652.1| ribonuclease activity regulator pr... 241 4e-62
gi|326384374|ref|ZP_08206055.1| ribonuclease activity regulator ... 238 2e-61
gi|333917721|ref|YP_004491302.1| regulator of ribonuclease activ... 237 6e-61
gi|319948319|ref|ZP_08022465.1| ribonuclease activity regulator ... 228 3e-58
gi|343926306|ref|ZP_08765815.1| ribonuclease regulator [Gordonia... 227 4e-58
gi|262200169|ref|YP_003271377.1| regulator of ribonuclease activ... 224 2e-57
gi|296137864|ref|YP_003645107.1| regulator of ribonuclease activ... 223 8e-57
gi|296392771|ref|YP_003657655.1| regulator of ribonuclease activ... 221 3e-56
gi|317507689|ref|ZP_07965396.1| RraA family protein [Segniliparu... 218 3e-55
gi|213965943|ref|ZP_03394133.1| regulator of ribonuclease activi... 215 2e-54
gi|226303562|ref|YP_002763520.1| ribonuclease regulator [Rhodoco... 214 4e-54
gi|312137586|ref|YP_004004922.1| ribonuclease e inhibitor rraa [... 213 9e-54
gi|169627212|ref|YP_001700861.1| hypothetical protein MAB_0107c ... 212 2e-53
gi|54022068|ref|YP_116310.1| ribonuclease activity regulator pro... 209 2e-52
gi|111020722|ref|YP_703694.1| ribonuclease activity regulator pr... 207 5e-52
gi|226362966|ref|YP_002780748.1| ribonuclease activity regulator... 207 5e-52
gi|25027543|ref|NP_737597.1| ribonuclease activity regulator pro... 207 6e-52
gi|37088871|sp|Q8FQY0.2|RRAAH_COREF RecName: Full=Putative regul... 206 7e-52
gi|172040754|ref|YP_001800469.1| ribonuclease activity regulator... 205 2e-51
gi|334564209|ref|ZP_08517200.1| ribonuclease activity regulator ... 205 2e-51
gi|340794262|ref|YP_004759725.1| regulator of ribonuclease activ... 205 2e-51
gi|134098719|ref|YP_001104380.1| ribonuclease activity regulator... 204 4e-51
gi|260578677|ref|ZP_05846585.1| regulator of ribonuclease activi... 202 1e-50
gi|68535977|ref|YP_250682.1| ribonuclease activity regulator pro... 202 2e-50
gi|336325539|ref|YP_004605505.1| S-adenosylmethionine:2-demethyl... 201 3e-50
gi|145295083|ref|YP_001137904.1| ribonuclease activity regulator... 197 5e-49
gi|37088990|sp|Q8NRW6.1|RRAAH_CORGL RecName: Full=Putative regul... 196 7e-49
gi|19552151|ref|NP_600153.1| ribonuclease activity regulator pro... 196 8e-49
gi|152966448|ref|YP_001362232.1| regulator of ribonuclease activ... 196 8e-49
gi|258650534|ref|YP_003199690.1| regulator of ribonuclease activ... 195 2e-48
gi|296269613|ref|YP_003652245.1| regulator of ribonuclease activ... 189 1e-46
gi|209965633|ref|YP_002298548.1| regulator of ribonuclease activ... 189 1e-46
>gi|34810988|pdb|1NXJ|A Chain A, Structure Of Rv3853 From Mycobacterium Tuberculosis
gi|34810989|pdb|1NXJ|B Chain B, Structure Of Rv3853 From Mycobacterium Tuberculosis
gi|34810990|pdb|1NXJ|C Chain C, Structure Of Rv3853 From Mycobacterium Tuberculosis
Length=183
Score = 309 bits (792), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 157/157 (100%), Positives = 157/157 (100%), Gaps = 0/157 (0%)
Query 1 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA
Sbjct 27 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 86
Query 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR
Sbjct 87 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 146
Query 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV
Sbjct 147 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 183
>gi|15610989|ref|NP_218370.1| ribonuclease activity regulator protein RraA [Mycobacterium tuberculosis
H37Rv]
gi|15843484|ref|NP_338521.1| ribonuclease activity regulator protein RraA [Mycobacterium tuberculosis
CDC1551]
gi|31795027|ref|NP_857520.1| ribonuclease activity regulator protein RraA [Mycobacterium bovis
AF2122/97]
85 more sequence titles
Length=157
Score = 307 bits (787), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 156/157 (99%), Positives = 157/157 (100%), Gaps = 0/157 (0%)
Query 1 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
+AISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA
Sbjct 1 MAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
Query 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR
Sbjct 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
Query 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV
Sbjct 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
>gi|118620039|ref|YP_908371.1| ribonuclease activity regulator protein RraA [Mycobacterium ulcerans
Agy99]
gi|118572149|gb|ABL06900.1| S-adenosylmethionine:2-demethylmenaquinone methyltransferase,
MenG [Mycobacterium ulcerans Agy99]
Length=165
Score = 289 bits (740), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 141/155 (91%), Positives = 150/155 (97%), Gaps = 0/155 (0%)
Query 3 ISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGG 62
++FRPTADLVDDIGPDVRSCDLQFRQFGG ++FAGPISTVRCFQDNALLKSVLSQP GG
Sbjct 4 VAFRPTADLVDDIGPDVRSCDLQFRQFGGHAEFAGPISTVRCFQDNALLKSVLSQPGEGG 63
Query 63 VLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKS 122
VLVIDGAGSLHTALVGDVIAELARS GWTGL+VHGAVRD+AALRGIDIGIKALGTNPRKS
Sbjct 64 VLVIDGAGSLHTALVGDVIAELARSNGWTGLVVHGAVRDSAALRGIDIGIKALGTNPRKS 123
Query 123 TKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
TKTG+GERD EITLGGVTFVPG+IAYSDDDGI+VV
Sbjct 124 TKTGSGERDAEITLGGVTFVPGEIAYSDDDGIVVV 158
>gi|183985372|ref|YP_001853663.1| s-adenosylmethionine:2-demethylmenaquinone methyltransferase,
MenG [Mycobacterium marinum M]
gi|183178698|gb|ACC43808.1| s-adenosylmethionine:2-demethylmenaquinone methyltransferase,
MenG [Mycobacterium marinum M]
Length=165
Score = 288 bits (736), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 140/155 (91%), Positives = 149/155 (97%), Gaps = 0/155 (0%)
Query 3 ISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGG 62
++FRPTADLVDDIGPDVRSCDLQFRQFGGR++FAGPISTVRCFQDNALLKSVLSQP GG
Sbjct 4 VAFRPTADLVDDIGPDVRSCDLQFRQFGGRAEFAGPISTVRCFQDNALLKSVLSQPGEGG 63
Query 63 VLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKS 122
VLVIDGAGSLHTALVGDVIAELARS GW GL+VHGAVRD+AALRGIDIGIKALGTNPRKS
Sbjct 64 VLVIDGAGSLHTALVGDVIAELARSNGWAGLVVHGAVRDSAALRGIDIGIKALGTNPRKS 123
Query 123 TKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
TKTG+GERD EITLGGVTF PG+IAYSDDDGI+VV
Sbjct 124 TKTGSGERDAEITLGGVTFAPGEIAYSDDDGIVVV 158
>gi|240168329|ref|ZP_04746988.1| ribonuclease activity regulator protein RraA [Mycobacterium kansasii
ATCC 12478]
Length=160
Score = 283 bits (725), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 138/155 (90%), Positives = 149/155 (97%), Gaps = 0/155 (0%)
Query 3 ISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGG 62
+SFRPTADLVDDIGPDVRSCDLQFRQFGGR++FAGPISTVRCFQDNALLKSVLSQP AGG
Sbjct 4 MSFRPTADLVDDIGPDVRSCDLQFRQFGGRAEFAGPISTVRCFQDNALLKSVLSQPGAGG 63
Query 63 VLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKS 122
VLVIDGAGSLHTALVGDVIAELARS GW GL+VHGAVRD+ LRGIDIGIKALGTNPRKS
Sbjct 64 VLVIDGAGSLHTALVGDVIAELARSNGWAGLVVHGAVRDSVTLRGIDIGIKALGTNPRKS 123
Query 123 TKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
TKTGAGERDV++T+GGVTFVPG++ YSDDDGI+VV
Sbjct 124 TKTGAGERDVDVTVGGVTFVPGEVLYSDDDGIVVV 158
>gi|296166983|ref|ZP_06849397.1| S-adenosylmethionine:2-demethylmenaquinone methyltransferase
[Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295897663|gb|EFG77255.1| S-adenosylmethionine:2-demethylmenaquinone methyltransferase
[Mycobacterium parascrofulaceum ATCC BAA-614]
Length=159
Score = 282 bits (721), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 136/157 (87%), Positives = 151/157 (97%), Gaps = 0/157 (0%)
Query 1 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
+ +SF+PTADLVDDIGPDVRSCD+QFRQFGGR +FAGPISTVRCF+DNALLKSVLSQPSA
Sbjct 1 MTVSFQPTADLVDDIGPDVRSCDVQFRQFGGRPEFAGPISTVRCFEDNALLKSVLSQPSA 60
Query 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
GGVLV+DG SLH+ALVGDVIAELARS GW GL+V+GAVRDAAALRG+DIGIKALGTNPR
Sbjct 61 GGVLVVDGGASLHSALVGDVIAELARSNGWAGLVVNGAVRDAAALRGLDIGIKALGTNPR 120
Query 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
KSTKTGAGERD+E+TLGGVTFVPG+IAYSDDDGI+VV
Sbjct 121 KSTKTGAGERDIEVTLGGVTFVPGEIAYSDDDGIVVV 157
>gi|254821454|ref|ZP_05226455.1| ribonuclease activity regulator protein RraA [Mycobacterium intracellulare
ATCC 13950]
Length=161
Score = 277 bits (709), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 135/157 (86%), Positives = 148/157 (95%), Gaps = 0/157 (0%)
Query 1 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
+ + FRPTADLVD IGPDVRSCD QFRQ GGR++FAGPISTVRCFQDNALLKSVLS+P
Sbjct 1 MTVPFRPTADLVDSIGPDVRSCDTQFRQLGGRAEFAGPISTVRCFQDNALLKSVLSEPGD 60
Query 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
GG+LVIDGAGSLHTALVGDVIAELARS GW GLI++GAVRD+AALRG++IGIKALGTNPR
Sbjct 61 GGILVIDGAGSLHTALVGDVIAELARSNGWAGLIINGAVRDSAALRGMNIGIKALGTNPR 120
Query 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
KSTKTGAGERDVEITLGGVTFVPG+IAYSDDDGI+VV
Sbjct 121 KSTKTGAGERDVEITLGGVTFVPGEIAYSDDDGIVVV 157
>gi|342860106|ref|ZP_08716758.1| ribonuclease activity regulator protein RraA [Mycobacterium colombiense
CECT 3035]
gi|342132484|gb|EGT85713.1| ribonuclease activity regulator protein RraA [Mycobacterium colombiense
CECT 3035]
Length=161
Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 135/157 (86%), Positives = 147/157 (94%), Gaps = 0/157 (0%)
Query 1 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
+ +SFRPTADLVD IGPDVRSCD+QFRQ GGR++FAGPISTVRCFQDNALLKSVLS+P
Sbjct 1 MTVSFRPTADLVDSIGPDVRSCDVQFRQLGGRAEFAGPISTVRCFQDNALLKSVLSEPGD 60
Query 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
GGVLVIDG GSLHTALVGDVIAELARS GW GLIV+GAVRD+A LRG+DIGIKALGTNPR
Sbjct 61 GGVLVIDGDGSLHTALVGDVIAELARSNGWAGLIVNGAVRDSATLRGMDIGIKALGTNPR 120
Query 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
KSTKTGAGERDVEI LGG+TFVPG+IAYSDDDGI+VV
Sbjct 121 KSTKTGAGERDVEIALGGITFVPGEIAYSDDDGIVVV 157
>gi|15826911|ref|NP_301174.1| ribonuclease activity regulator protein RraA [Mycobacterium leprae
TN]
gi|221229389|ref|YP_002502805.1| ribonuclease activity regulator protein RraA [Mycobacterium leprae
Br4923]
gi|17368730|sp|Q9CDD2.1|RRAAH_MYCLE RecName: Full=Putative regulator of ribonuclease activity
gi|254809481|sp|B8ZTT3.1|RRAAH_MYCLB RecName: Full=Putative regulator of ribonuclease activity
gi|13092458|emb|CAC29574.1| putative S-adenosylmethionine:2-demethylmenaquinone methyltransferase
[Mycobacterium leprae]
gi|219932496|emb|CAR70159.1| putative S-adenosylmethionine:2-demethylmenaquinone methyltransferase
[Mycobacterium leprae Br4923]
Length=157
Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 135/155 (88%), Positives = 143/155 (93%), Gaps = 0/155 (0%)
Query 3 ISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGG 62
+SFRPTADLVD IG DVRSCDLQFRQFGG S+FAGPISTVRCFQDNALLKSVLSQ SAGG
Sbjct 3 VSFRPTADLVDSIGVDVRSCDLQFRQFGGCSEFAGPISTVRCFQDNALLKSVLSQTSAGG 62
Query 63 VLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKS 122
VLV+DGAGSLHTALVGDVIAELA S GW GLIV+GAVRDAAALRGIDIGIKALGTNPRKS
Sbjct 63 VLVVDGAGSLHTALVGDVIAELAHSNGWAGLIVNGAVRDAAALRGIDIGIKALGTNPRKS 122
Query 123 TKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
TK G GER VE+ LGGVTFVPG++ YSDDDGI+VV
Sbjct 123 TKIGTGERHVEVNLGGVTFVPGEVVYSDDDGIVVV 157
>gi|333992806|ref|YP_004525420.1| s-adenosylmethionine:2-demethylmenaquinone methyltransferase
MenG [Mycobacterium sp. JDM601]
gi|333488774|gb|AEF38166.1| s-adenosylmethionine:2-demethylmenaquinone methyltransferase
MenG [Mycobacterium sp. JDM601]
Length=157
Score = 264 bits (675), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 129/157 (83%), Positives = 144/157 (92%), Gaps = 0/157 (0%)
Query 1 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
++ +FRPTADLVDDIG DVRSCDLQFRQ GGR++FAG ISTVRCF+DNAL+KSVLS+P
Sbjct 1 MSAAFRPTADLVDDIGADVRSCDLQFRQLGGRTEFAGRISTVRCFEDNALVKSVLSEPGD 60
Query 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
GGVLVIDGAGSLHTALVGD+IAELARS GW GLIVHGAVRDAA LR +DIG+KALGTNPR
Sbjct 61 GGVLVIDGAGSLHTALVGDLIAELARSNGWAGLIVHGAVRDAAMLRTLDIGVKALGTNPR 120
Query 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
KSTKTGAGERDV + LGG+ FVPG+IAYSDDDGI+VV
Sbjct 121 KSTKTGAGERDVVVELGGIAFVPGEIAYSDDDGIVVV 157
>gi|118463623|ref|YP_879469.1| ribonuclease activity regulator protein RraA [Mycobacterium avium
104]
gi|166230388|sp|A0Q981.1|RRAAH_MYCA1 RecName: Full=Putative regulator of ribonuclease activity
gi|118164910|gb|ABK65807.1| regulator of ribonuclease activity A [Mycobacterium avium 104]
Length=161
Score = 261 bits (667), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/157 (87%), Positives = 149/157 (95%), Gaps = 0/157 (0%)
Query 1 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
+ +SFRPTADLVDDIGPDVRSCDLQFRQ GGR++FAGPISTVRCFQDNALLKSVLS+P
Sbjct 1 MTVSFRPTADLVDDIGPDVRSCDLQFRQLGGRTEFAGPISTVRCFQDNALLKSVLSEPGG 60
Query 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
GGVLV+DG GSLHTALVGDVIAELAR+ GW GLIV+GAVRD+AALRG+DIG+KALGTNPR
Sbjct 61 GGVLVVDGGGSLHTALVGDVIAELARANGWAGLIVNGAVRDSAALRGMDIGVKALGTNPR 120
Query 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
KSTKTGAGERDV+ITLGGVTF PGDIAYSDDDGI+VV
Sbjct 121 KSTKTGAGERDVDITLGGVTFTPGDIAYSDDDGIVVV 157
>gi|254773232|ref|ZP_05214748.1| ribonuclease activity regulator protein RraA [Mycobacterium avium
subsp. avium ATCC 25291]
Length=161
Score = 259 bits (663), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 135/157 (86%), Positives = 148/157 (95%), Gaps = 0/157 (0%)
Query 1 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
+ +SFRPTADLVDDIGPDVRSCDLQFRQ GGR++FAGPISTVRCFQDNALLKSVLS+P
Sbjct 1 MTVSFRPTADLVDDIGPDVRSCDLQFRQLGGRTEFAGPISTVRCFQDNALLKSVLSEPGG 60
Query 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
GGVLV+DG GSLHTALVGD IAELAR+ GW GLIV+GAVRD+AALRG+DIG+KALGTNPR
Sbjct 61 GGVLVVDGGGSLHTALVGDAIAELARANGWAGLIVNGAVRDSAALRGMDIGVKALGTNPR 120
Query 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
KSTKTGAGERDV+ITLGGVTF PGDIAYSDDDGI+VV
Sbjct 121 KSTKTGAGERDVDITLGGVTFTPGDIAYSDDDGIVVV 157
>gi|41406279|ref|NP_959115.1| ribonuclease activity regulator protein RraA [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|61215990|sp|Q745I2.1|RRAAH_MYCPA RecName: Full=Putative regulator of ribonuclease activity
gi|41394627|gb|AAS02498.1| MenG [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336461864|gb|EGO40719.1| RraA family protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=160
Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 135/156 (87%), Positives = 148/156 (95%), Gaps = 0/156 (0%)
Query 1 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
+ +SFRPTADLVDDIGPDVRSCDLQFRQ GGR++FAGPISTVRCFQDNALLKSVLS+P
Sbjct 1 MTVSFRPTADLVDDIGPDVRSCDLQFRQLGGRTEFAGPISTVRCFQDNALLKSVLSEPGG 60
Query 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
GGVLV+DG GSLHTALVGDVIAELAR+ GW GLIV+GAVRD+AALRG+DIG+KALGTNPR
Sbjct 61 GGVLVVDGGGSLHTALVGDVIAELARANGWAGLIVNGAVRDSAALRGMDIGVKALGTNPR 120
Query 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
KSTKTGAGERDV+ITLGGVTF PGDIAYSDDDGI+V
Sbjct 121 KSTKTGAGERDVDITLGGVTFTPGDIAYSDDDGIVV 156
>gi|145221716|ref|YP_001132394.1| ribonuclease activity regulator protein RraA [Mycobacterium gilvum
PYR-GCK]
gi|189044039|sp|A4T3Z0.1|RRAAH_MYCGI RecName: Full=Putative regulator of ribonuclease activity
gi|145214202|gb|ABP43606.1| regulator of ribonuclease activity A [Mycobacterium gilvum PYR-GCK]
Length=160
Score = 250 bits (639), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 121/157 (78%), Positives = 140/157 (90%), Gaps = 0/157 (0%)
Query 1 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
+A++ RPTADLVD+IGP+VRSCDLQ RQFGGRS+FAGPI+TVRCF+DNALLKSVLS+P
Sbjct 1 MAVTPRPTADLVDEIGPEVRSCDLQMRQFGGRSEFAGPITTVRCFEDNALLKSVLSEPGD 60
Query 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
GGVLV+DG GS+HTALVGDVIAEL RS GW+GLI++GAVRDA+ LR +DIGIKALGTNPR
Sbjct 61 GGVLVVDGDGSVHTALVGDVIAELGRSNGWSGLIINGAVRDASTLRTLDIGIKALGTNPR 120
Query 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
KS+KTG G RD + GGV F PGDIAYSDDDGI+VV
Sbjct 121 KSSKTGDGVRDAVVEFGGVVFTPGDIAYSDDDGIVVV 157
>gi|126437998|ref|YP_001073689.1| ribonuclease activity regulator protein RraA [Mycobacterium sp.
JLS]
gi|166230391|sp|A3Q7S1.1|RRAAH_MYCSJ RecName: Full=Putative regulator of ribonuclease activity
gi|126237798|gb|ABO01199.1| regulator of ribonuclease activity A [Mycobacterium sp. JLS]
Length=159
Score = 249 bits (637), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 123/157 (79%), Positives = 137/157 (88%), Gaps = 0/157 (0%)
Query 1 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
+ I R TADLVDDIGPDVRSCDLQ RQFGGR +FAG ++TVRCFQDNALLKSVLS+P
Sbjct 1 MTIEPRATADLVDDIGPDVRSCDLQLRQFGGRPEFAGRVTTVRCFQDNALLKSVLSEPGD 60
Query 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
GGVLVIDG GSLHTALVGDVIA L R GW+GLI++GAVRDA+ LR +DIGIKALGTNPR
Sbjct 61 GGVLVIDGDGSLHTALVGDVIAALGRDNGWSGLIINGAVRDASTLRTLDIGIKALGTNPR 120
Query 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
KSTKTGAGERDV + GGVTF PGD+AYSDDDGI++V
Sbjct 121 KSTKTGAGERDVPVEFGGVTFTPGDVAYSDDDGIVIV 157
>gi|315446548|ref|YP_004079427.1| RraA family protein [Mycobacterium sp. Spyr1]
gi|315264851|gb|ADU01593.1| RraA family protein [Mycobacterium sp. Spyr1]
Length=160
Score = 249 bits (637), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 121/157 (78%), Positives = 140/157 (90%), Gaps = 0/157 (0%)
Query 1 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
+A++ RPTADLVD+IGP+VRSCDLQ RQFGGRS+FAGPI+TVRCF+DNALLKSVLS+P
Sbjct 1 MALTPRPTADLVDEIGPEVRSCDLQMRQFGGRSEFAGPITTVRCFEDNALLKSVLSEPGD 60
Query 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
GGVLV+DG GS+HTALVGDVIAEL RS GW+GLI++GAVRDA+ LR +DIGIKALGTNPR
Sbjct 61 GGVLVVDGDGSVHTALVGDVIAELGRSNGWSGLIINGAVRDASTLRTLDIGIKALGTNPR 120
Query 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
KS+KTG G RD + GGV F PGDIAYSDDDGI+VV
Sbjct 121 KSSKTGDGVRDAVVEFGGVVFTPGDIAYSDDDGIVVV 157
>gi|120406624|ref|YP_956453.1| ribonuclease activity regulator protein RraA [Mycobacterium vanbaalenii
PYR-1]
gi|226703228|sp|A1TGZ7.1|RRAAH_MYCVP RecName: Full=Putative regulator of ribonuclease activity
gi|119959442|gb|ABM16447.1| regulator of ribonuclease activity A [Mycobacterium vanbaalenii
PYR-1]
Length=160
Score = 249 bits (637), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 121/157 (78%), Positives = 138/157 (88%), Gaps = 0/157 (0%)
Query 1 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
+ ++ RPTADLVD+IGPDVRSCDLQ RQ+GGR+ FAGPI+TVRCFQDNALLKSVLS+P
Sbjct 1 MTVTPRPTADLVDEIGPDVRSCDLQLRQYGGRTDFAGPITTVRCFQDNALLKSVLSEPGD 60
Query 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
GGVLVIDG GS+HTALVGDVIAEL RS GW+GLI++GAVRDA+ LR +DIGIKALGTNPR
Sbjct 61 GGVLVIDGDGSVHTALVGDVIAELGRSNGWSGLIINGAVRDASTLRTLDIGIKALGTNPR 120
Query 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
KSTKTG G RD + GGV F PGDIAYSDDDGI+V+
Sbjct 121 KSTKTGEGIRDEAVEFGGVVFTPGDIAYSDDDGIVVI 157
>gi|108802019|ref|YP_642216.1| ribonuclease activity regulator protein RraA [Mycobacterium sp.
MCS]
gi|119871171|ref|YP_941123.1| ribonuclease activity regulator protein RraA [Mycobacterium sp.
KMS]
gi|122382266|sp|Q1B1S4.1|RRAAH_MYCSS RecName: Full=Putative regulator of ribonuclease activity
gi|166230392|sp|A1UNC5.1|RRAAH_MYCSK RecName: Full=Putative regulator of ribonuclease activity
gi|108772438|gb|ABG11160.1| Protein of unknown function 1935 [Mycobacterium sp. MCS]
gi|119697260|gb|ABL94333.1| regulator of ribonuclease activity A [Mycobacterium sp. KMS]
Length=159
Score = 247 bits (631), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 123/157 (79%), Positives = 136/157 (87%), Gaps = 0/157 (0%)
Query 1 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
+ I R TADLVDDIGPDVRSCDLQ RQFG R +FAG ++TVRCFQDNALLKSVLS+P
Sbjct 1 MTIEPRATADLVDDIGPDVRSCDLQLRQFGRRPEFAGRVTTVRCFQDNALLKSVLSEPGD 60
Query 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
GGVLVIDG GSLHTALVGDVIA L R GW+GLI++GAVRDA+ LR +DIGIKALGTNPR
Sbjct 61 GGVLVIDGDGSLHTALVGDVIAALGRDNGWSGLIINGAVRDASTLRTLDIGIKALGTNPR 120
Query 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
KSTKTGAGERDV + GGVTF PGD+AYSDDDGI+VV
Sbjct 121 KSTKTGAGERDVPVDFGGVTFTPGDVAYSDDDGIVVV 157
>gi|118469646|ref|YP_890652.1| ribonuclease activity regulator protein RraA [Mycobacterium smegmatis
str. MC2 155]
gi|166230390|sp|A0R664.1|RRAAH_MYCS2 RecName: Full=Putative regulator of ribonuclease activity
gi|118170933|gb|ABK71829.1| regulator of ribonuclease activity A [Mycobacterium smegmatis
str. MC2 155]
Length=159
Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/157 (75%), Positives = 135/157 (86%), Gaps = 0/157 (0%)
Query 1 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
++I R TADLVD+I PDVRSCDLQ + +GG+ FAGP++TVRCFQDNALLKS+LS P
Sbjct 1 MSIEPRATADLVDEIYPDVRSCDLQLQNYGGKIMFAGPVTTVRCFQDNALLKSILSTPGE 60
Query 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
G VLV+DGAGSLHTALVGDVIA LA GW+G+IV+GAVRDAAALR ID+GIKALGTNPR
Sbjct 61 GAVLVVDGAGSLHTALVGDVIAGLAADNGWSGVIVNGAVRDAAALRTIDVGIKALGTNPR 120
Query 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
K TKTG GERDVE++ GGVTF PGDIAY D+DGI+VV
Sbjct 121 KGTKTGEGERDVEVSFGGVTFTPGDIAYCDEDGIVVV 157
>gi|326384374|ref|ZP_08206055.1| ribonuclease activity regulator protein RraA [Gordonia neofelifaecis
NRRL B-59395]
gi|326196972|gb|EGD54165.1| ribonuclease activity regulator protein RraA [Gordonia neofelifaecis
NRRL B-59395]
Length=162
Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/155 (73%), Positives = 134/155 (87%), Gaps = 0/155 (0%)
Query 3 ISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGG 62
++F PTADLVD+IG DVRSCD QF Q+GG +F G ++TVRCFQDNALLKS+LS+P+ GG
Sbjct 4 LNFTPTADLVDEIGADVRSCDTQFTQYGGNREFVGTVTTVRCFQDNALLKSILSEPNPGG 63
Query 63 VLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKS 122
VLVIDGA S+HTALVGD+IAEL RS GW G+I +GA+RDA + G+DIG+KALGTNPRKS
Sbjct 64 VLVIDGAASVHTALVGDIIAELGRSNGWVGIIANGAIRDAKTIGGMDIGVKALGTNPRKS 123
Query 123 TKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
TK+G G+RDV I LGG+TF PGDIAYSDDDGI+VV
Sbjct 124 TKSGVGDRDVPIELGGITFNPGDIAYSDDDGIVVV 158
>gi|333917721|ref|YP_004491302.1| regulator of ribonuclease activity A [Amycolicicoccus subflavus
DQS3-9A1]
gi|333479942|gb|AEF38502.1| Regulator of ribonuclease activity A [Amycolicicoccus subflavus
DQS3-9A1]
Length=160
Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 112/155 (73%), Positives = 133/155 (86%), Gaps = 0/155 (0%)
Query 3 ISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGG 62
+ F TADL D+IGP+++SCD QF QFGGR +FAG I+TV+CFQDNALLKS+L +P GG
Sbjct 4 VEFTATADLADEIGPEIKSCDTQFTQFGGRREFAGRITTVKCFQDNALLKSILGEPGNGG 63
Query 63 VLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKS 122
VLVIDG GS+HTALVGDVIAEL RS GW+GLI++GAVRDAA L +D G+KALGTNPRKS
Sbjct 64 VLVIDGEGSVHTALVGDVIAELGRSNGWSGLIINGAVRDAAVLGTLDFGVKALGTNPRKS 123
Query 123 TKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
TKTGAGERDV I +GG+TF PGDI +SDDDG++VV
Sbjct 124 TKTGAGERDVPIEIGGITFAPGDILHSDDDGVVVV 158
>gi|319948319|ref|ZP_08022465.1| ribonuclease activity regulator protein RraA [Dietzia cinnamea
P4]
gi|319438001|gb|EFV92975.1| ribonuclease activity regulator protein RraA [Dietzia cinnamea
P4]
Length=160
Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 107/152 (71%), Positives = 129/152 (85%), Gaps = 0/152 (0%)
Query 5 FRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVL 64
F PTADLVD+IG DVRSCD QFR GGR++F+GPISTVRCFQDNALLKSVL +P G VL
Sbjct 8 FIPTADLVDEIGEDVRSCDTQFRDLGGRTEFSGPISTVRCFQDNALLKSVLGEPGEGRVL 67
Query 65 VIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTK 124
VIDG S+HTALVGD+IAEL RS GW+G++V+GA+RD+A + G++ G KALGTNPRKSTK
Sbjct 68 VIDGGASVHTALVGDIIAELGRSNGWSGVVVNGAIRDSAVIAGMEFGCKALGTNPRKSTK 127
Query 125 TGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
TG GERDV ++ GGV FVPG++ Y+D DGI+V
Sbjct 128 TGEGERDVTVSFGGVDFVPGEMLYADSDGIVV 159
>gi|343926306|ref|ZP_08765815.1| ribonuclease regulator [Gordonia alkanivorans NBRC 16433]
gi|343763935|dbj|GAA12741.1| ribonuclease regulator [Gordonia alkanivorans NBRC 16433]
Length=162
Score = 227 bits (579), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/155 (70%), Positives = 132/155 (86%), Gaps = 0/155 (0%)
Query 3 ISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGG 62
++F PTADLVD+IG DVRSCD QF Q+GG +F G ++TV+CFQDNALLKS+LS+ + GG
Sbjct 4 LTFTPTADLVDEIGADVRSCDTQFTQYGGNREFVGRVTTVKCFQDNALLKSILSESNPGG 63
Query 63 VLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKS 122
VLVIDG S+HTALVGD+IAEL RS GW G+IV+GA+RDA + G+ IG+KALGTNPRKS
Sbjct 64 VLVIDGDASVHTALVGDIIAELGRSNGWVGIIVNGAIRDAKTIGGMAIGVKALGTNPRKS 123
Query 123 TKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
TKTGAG+RDV +++GG TF PGDI YSDDDGI++V
Sbjct 124 TKTGAGDRDVPLSIGGETFNPGDIVYSDDDGIVLV 158
>gi|262200169|ref|YP_003271377.1| regulator of ribonuclease activity A [Gordonia bronchialis DSM
43247]
gi|262083516|gb|ACY19484.1| regulator of ribonuclease activity A [Gordonia bronchialis DSM
43247]
Length=166
Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/155 (67%), Positives = 131/155 (85%), Gaps = 0/155 (0%)
Query 3 ISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGG 62
++F PTADLVD+IG VRSCDLQF Q+GG +F G ++TV+CFQDNALLKS+L + + GG
Sbjct 8 LTFTPTADLVDEIGDTVRSCDLQFTQYGGNREFVGRVTTVKCFQDNALLKSILGESNPGG 67
Query 63 VLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKS 122
VLV+DGAGS+HTALVGD+IAEL RS GW G+I++ A+RD+ + ++IG+KALGTNPRKS
Sbjct 68 VLVVDGAGSVHTALVGDLIAELGRSNGWVGIIINAAIRDSKPIGEMEIGVKALGTNPRKS 127
Query 123 TKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
TKTG GERD+ +T+GG TF PGDI YSDDDGI++V
Sbjct 128 TKTGVGERDIPLTIGGETFNPGDIVYSDDDGIVIV 162
>gi|296137864|ref|YP_003645107.1| regulator of ribonuclease activity A [Tsukamurella paurometabola
DSM 20162]
gi|296025998|gb|ADG76768.1| regulator of ribonuclease activity A [Tsukamurella paurometabola
DSM 20162]
Length=163
Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 109/159 (69%), Positives = 129/159 (82%), Gaps = 5/159 (3%)
Query 3 ISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGG 62
+ F PTADLVD+IG +VRSCD QFRQFGGR FAG + TV+CFQDNALLKSVL +P AG
Sbjct 4 VQFTPTADLVDEIGEEVRSCDTQFRQFGGRRAFAGEVVTVKCFQDNALLKSVLGEPGAGR 63
Query 63 VLVIDGAG-----SLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGT 117
VLVIDG+ SLHTALVGD+IAEL R GW G++ +GA+RDAA + +DIG+KALGT
Sbjct 64 VLVIDGSDENGVPSLHTALVGDIIAELGRGNGWAGIVAYGAIRDAAVIGTLDIGVKALGT 123
Query 118 NPRKSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
NPRKSTKTGAGERDV ++ GGVTF PGD +SDDDGI++
Sbjct 124 NPRKSTKTGAGERDVPLSFGGVTFAPGDTLFSDDDGIVL 162
>gi|296392771|ref|YP_003657655.1| regulator of ribonuclease activity A [Segniliparus rotundus DSM
44985]
gi|296179918|gb|ADG96824.1| regulator of ribonuclease activity A [Segniliparus rotundus DSM
44985]
Length=160
Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/155 (68%), Positives = 127/155 (82%), Gaps = 0/155 (0%)
Query 2 AISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAG 61
A++F PTADLVD IG VRSCD QFRQ+GGR QFAGP+ T+R FQDNAL+KS LS P G
Sbjct 3 AVNFTPTADLVDQIGEQVRSCDTQFRQYGGRRQFAGPVRTIRAFQDNALIKSTLSTPGNG 62
Query 62 GVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRK 121
VLV+DG+ S+HTALVGDVIA+LA GW GL+++GAVRD AAL G+D+G+KALG+NPRK
Sbjct 63 AVLVVDGSASVHTALVGDVIAKLAEDNGWAGLVLNGAVRDVAALAGLDLGVKALGSNPRK 122
Query 122 STKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
S KTGAGE DV + GGV F PGD+ +SD+DGI++
Sbjct 123 SGKTGAGELDVPVEFGGVVFRPGDLLHSDEDGIVL 157
>gi|317507689|ref|ZP_07965396.1| RraA family protein [Segniliparus rugosus ATCC BAA-974]
gi|316254016|gb|EFV13379.1| RraA family protein [Segniliparus rugosus ATCC BAA-974]
Length=160
Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/155 (67%), Positives = 127/155 (82%), Gaps = 0/155 (0%)
Query 2 AISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAG 61
A++F PTADLVD IG VRSCD QFRQ+GGR QF GP+ T+R FQDNAL+K+ LS P G
Sbjct 3 AVNFIPTADLVDQIGDQVRSCDTQFRQYGGRLQFVGPVRTIRAFQDNALIKATLSTPGEG 62
Query 62 GVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRK 121
VLV+DG+ S+HTALVGDVIA+LA+ GW GL+++GAVRD AAL G+D+GIKALG+NPRK
Sbjct 63 AVLVVDGSASVHTALVGDVIAKLAQDNGWAGLVLNGAVRDVAALAGLDLGIKALGSNPRK 122
Query 122 STKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
S KTGAGE DV + GGV F PGD+ +SD+DGI++
Sbjct 123 SGKTGAGELDVPVEFGGVVFNPGDLLHSDEDGIVL 157
>gi|213965943|ref|ZP_03394133.1| regulator of ribonuclease activity A [Corynebacterium amycolatum
SK46]
gi|213951357|gb|EEB62749.1| regulator of ribonuclease activity A [Corynebacterium amycolatum
SK46]
Length=157
Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/156 (67%), Positives = 123/156 (79%), Gaps = 0/156 (0%)
Query 1 VAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSA 60
+ I F PTADLVD+IGPDVRSCD Q R GGR +F G ISTV+CFQDNALLK VLS+ S
Sbjct 1 MTIEFIPTADLVDEIGPDVRSCDTQMRNLGGRLEFCGKISTVKCFQDNALLKKVLSESSE 60
Query 61 GGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPR 120
GGVLVIDG S+HTALVGDVIA L + GW G++V+GA+RD+ + +D G KALGTNPR
Sbjct 61 GGVLVIDGDASVHTALVGDVIAGLGKDNGWAGVVVNGAIRDSKLIGEMDFGCKALGTNPR 120
Query 121 KSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
KSTKTG GERDV ++ GG+ FVPG+ Y+D DGI+V
Sbjct 121 KSTKTGEGERDVVVSFGGIDFVPGETLYADSDGIVV 156
>gi|226303562|ref|YP_002763520.1| ribonuclease regulator [Rhodococcus erythropolis PR4]
gi|229492215|ref|ZP_04386023.1| regulator of ribonuclease activity A [Rhodococcus erythropolis
SK121]
gi|226182677|dbj|BAH30781.1| putative ribonuclease regulator [Rhodococcus erythropolis PR4]
gi|229320841|gb|EEN86654.1| regulator of ribonuclease activity A [Rhodococcus erythropolis
SK121]
Length=158
Score = 214 bits (544), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 100/149 (68%), Positives = 123/149 (83%), Gaps = 0/149 (0%)
Query 8 TADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVID 67
TADL D+IGPD+RSCD QF QFGGR FAGPI+T++CFQDN L+K LS+P GGVLV+D
Sbjct 7 TADLADEIGPDIRSCDTQFTQFGGREVFAGPITTIKCFQDNLLVKQTLSEPGNGGVLVVD 66
Query 68 GAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGA 127
G S+HTALVGD+IA GW G+IV+GAVRD+A LR +DIG+KALGTNPRKST+TG+
Sbjct 67 GDASIHTALVGDIIAGRGVDNGWAGVIVNGAVRDSAILRTLDIGVKALGTNPRKSTQTGS 126
Query 128 GERDVEITLGGVTFVPGDIAYSDDDGIIV 156
GE++V I +GGVTF PG+I YSD DG++V
Sbjct 127 GEKNVPIEIGGVTFNPGEIVYSDQDGVVV 155
>gi|312137586|ref|YP_004004922.1| ribonuclease e inhibitor rraa [Rhodococcus equi 103S]
gi|325677443|ref|ZP_08157107.1| S-adenosylmethionine:2-demethylmenaquinone methyltransferase
[Rhodococcus equi ATCC 33707]
gi|311886925|emb|CBH46234.1| ribonuclease E inhibitor RraA [Rhodococcus equi 103S]
gi|325551690|gb|EGD21388.1| S-adenosylmethionine:2-demethylmenaquinone methyltransferase
[Rhodococcus equi ATCC 33707]
Length=156
Score = 213 bits (541), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 99/149 (67%), Positives = 124/149 (84%), Gaps = 0/149 (0%)
Query 8 TADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVID 67
TADL D+IGPD+RSCD QF QFG R+ F+GPI+T++CFQDN L+K LS+P GGVLV+D
Sbjct 7 TADLADEIGPDIRSCDTQFIQFGARAVFSGPITTIKCFQDNLLVKQTLSEPGNGGVLVVD 66
Query 68 GAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGA 127
G S+HTALVGD+IA S GW G+IV+GAVRD+A LR +DIGIKALGTNPRKST+TG+
Sbjct 67 GDASVHTALVGDIIAGRGVSNGWAGVIVNGAVRDSAILRTLDIGIKALGTNPRKSTQTGS 126
Query 128 GERDVEITLGGVTFVPGDIAYSDDDGIIV 156
GE++V ++ GGVTF PG+ YSDDDG++V
Sbjct 127 GEKNVPVSFGGVTFNPGETVYSDDDGVVV 155
>gi|169627212|ref|YP_001700861.1| hypothetical protein MAB_0107c [Mycobacterium abscessus ATCC
19977]
gi|169239179|emb|CAM60207.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=162
Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/155 (68%), Positives = 126/155 (82%), Gaps = 0/155 (0%)
Query 3 ISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGG 62
I+ RPTADL D++G D+ SCDLQ Q+G R FAG I+TVRC DNALLKSVLS+PS+GG
Sbjct 6 ITPRPTADLGDELGIDMASCDLQLNQYGARPVFAGVITTVRCHHDNALLKSVLSEPSSGG 65
Query 63 VLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKS 122
VLVIDG GSLH ALVGDVIA LA ++GW+GL+++G VRD+A L +DIGIKALGTNPRK
Sbjct 66 VLVIDGGGSLHCALVGDVIAGLAVASGWSGLVINGVVRDSAELATMDIGIKALGTNPRKG 125
Query 123 TKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
KTGAGERDV ++ GG+ F PG I Y+D DG++VV
Sbjct 126 HKTGAGERDVVVSFGGIDFTPGAICYADHDGVVVV 160
>gi|54022068|ref|YP_116310.1| ribonuclease activity regulator protein RraA [Nocardia farcinica
IFM 10152]
gi|61215828|sp|Q5Z3P5.1|RRAAH_NOCFA RecName: Full=Putative regulator of ribonuclease activity
gi|54013576|dbj|BAD54946.1| putative S-adenosylmethionine:2- demethylmenaquinone methyltransferase
[Nocardia farcinica IFM 10152]
Length=165
Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 99/149 (67%), Positives = 121/149 (82%), Gaps = 0/149 (0%)
Query 8 TADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVID 67
TADL D+IGP++RSCD QF QFGGR+ F+G I+T+RCFQDN L+K L +P G VLV+D
Sbjct 14 TADLADEIGPEIRSCDTQFIQFGGRAAFSGRITTIRCFQDNLLVKQTLGEPGEGKVLVVD 73
Query 68 GAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGA 127
G S+HTALVGD+IA GW G+IV+GAVRD+A LR +DIGIKALGTNPRKST+TG+
Sbjct 74 GGASVHTALVGDIIAGRGVDNGWAGVIVNGAVRDSAILRTLDIGIKALGTNPRKSTQTGS 133
Query 128 GERDVEITLGGVTFVPGDIAYSDDDGIIV 156
GERDV + GGVTFVPG++ YSD DGI+V
Sbjct 134 GERDVPVEFGGVTFVPGEMLYSDHDGIVV 162
>gi|111020722|ref|YP_703694.1| ribonuclease activity regulator protein RraA [Rhodococcus jostii
RHA1]
gi|110820252|gb|ABG95536.1| possible S-adenosylmethionine:2-demethylmenaquinone methyltransferase
[Rhodococcus jostii RHA1]
Length=156
Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 96/149 (65%), Positives = 121/149 (82%), Gaps = 0/149 (0%)
Query 8 TADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVID 67
TADL D+IGPD+RSCD QF QFGGR F+GPI+T++CFQDN L+K L +P GGVLV+D
Sbjct 7 TADLADEIGPDIRSCDTQFIQFGGREVFSGPITTIKCFQDNLLVKQTLGEPGNGGVLVVD 66
Query 68 GAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGA 127
G S+HTALVGD+IA GW G+IV+GAVRD+A L+ +DIG+KALGTNPRKST+TG+
Sbjct 67 GDASIHTALVGDIIAGRGVDNGWAGVIVNGAVRDSAILKTLDIGVKALGTNPRKSTQTGS 126
Query 128 GERDVEITLGGVTFVPGDIAYSDDDGIIV 156
GE++V I +GGVTF PG+ YSD DG++V
Sbjct 127 GEKNVPIEIGGVTFNPGETVYSDQDGVVV 155
>gi|226362966|ref|YP_002780748.1| ribonuclease activity regulator protein RraA [Rhodococcus opacus
B4]
gi|226241455|dbj|BAH51803.1| ribonuclease regulator [Rhodococcus opacus B4]
Length=156
Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 96/149 (65%), Positives = 121/149 (82%), Gaps = 0/149 (0%)
Query 8 TADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVID 67
TADL D+IGP++RSCD QF QFGGR F+GPI+T++CFQDN L+K L +P GGVLV+D
Sbjct 7 TADLADEIGPEIRSCDTQFTQFGGRKVFSGPITTIKCFQDNLLVKQTLGEPGNGGVLVVD 66
Query 68 GAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGA 127
G S+HTALVGD+IA GW G+IV+GAVRD+A L +DIG+KALGTNPRKST+TG+
Sbjct 67 GDASIHTALVGDIIAGRGVDNGWAGVIVNGAVRDSAILATLDIGVKALGTNPRKSTQTGS 126
Query 128 GERDVEITLGGVTFVPGDIAYSDDDGIIV 156
GE++V IT+GGVTF PG+ YSD DG++V
Sbjct 127 GEKNVPITIGGVTFNPGETVYSDQDGVVV 155
>gi|25027543|ref|NP_737597.1| ribonuclease activity regulator protein RraA [Corynebacterium
efficiens YS-314]
gi|259507049|ref|ZP_05749949.1| regulator of ribonuclease activity A [Corynebacterium efficiens
YS-314]
gi|23492825|dbj|BAC17797.1| putative S-adenosylmethionine:2- demethylmenaquinone methyltransferase
[Corynebacterium efficiens YS-314]
gi|259165327|gb|EEW49881.1| regulator of ribonuclease activity A [Corynebacterium efficiens
YS-314]
Length=193
Score = 207 bits (526), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 100/153 (66%), Positives = 122/153 (80%), Gaps = 0/153 (0%)
Query 4 SFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGV 63
+F PTADLVD IG DVRSCD QFR GGR+ F G I+TV+CFQDNALLKS+L + + GGV
Sbjct 30 TFIPTADLVDIIGDDVRSCDTQFRNLGGRTDFHGTITTVKCFQDNALLKSILGEDNPGGV 89
Query 64 LVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKST 123
LVIDG SLHTALVGD+IA L R GW+G++V+GA+RD+A + ++ G KALGTNPRKS+
Sbjct 90 LVIDGDASLHTALVGDIIAGLGRDHGWSGVVVNGAIRDSAVIGEMEFGCKALGTNPRKSS 149
Query 124 KTGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
KTGAGERDV ++ GGV F PG Y+D DGI+V
Sbjct 150 KTGAGERDVVVSFGGVDFTPGHYLYADSDGIVV 182
>gi|37088871|sp|Q8FQY0.2|RRAAH_COREF RecName: Full=Putative regulator of ribonuclease activity
Length=170
Score = 206 bits (525), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 100/153 (66%), Positives = 122/153 (80%), Gaps = 0/153 (0%)
Query 4 SFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGV 63
+F PTADLVD IG DVRSCD QFR GGR+ F G I+TV+CFQDNALLKS+L + + GGV
Sbjct 7 TFIPTADLVDIIGDDVRSCDTQFRNLGGRTDFHGTITTVKCFQDNALLKSILGEDNPGGV 66
Query 64 LVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKST 123
LVIDG SLHTALVGD+IA L R GW+G++V+GA+RD+A + ++ G KALGTNPRKS+
Sbjct 67 LVIDGDASLHTALVGDIIAGLGRDHGWSGVVVNGAIRDSAVIGEMEFGCKALGTNPRKSS 126
Query 124 KTGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
KTGAGERDV ++ GGV F PG Y+D DGI+V
Sbjct 127 KTGAGERDVVVSFGGVDFTPGHYLYADSDGIVV 159
>gi|172040754|ref|YP_001800469.1| ribonuclease activity regulator protein RraA [Corynebacterium
urealyticum DSM 7109]
gi|171852058|emb|CAQ05034.1| S-adenosylmethionine:2-demethylmenaquinone methyltransferase
[Corynebacterium urealyticum DSM 7109]
Length=186
Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/154 (65%), Positives = 121/154 (79%), Gaps = 0/154 (0%)
Query 3 ISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGG 62
I+F PTADLVD IG + RSCD QF+ GG+ +F G I+TV CFQDNALLKS+LS+P+ GG
Sbjct 25 ITFIPTADLVDIIGAESRSCDTQFQDLGGKVEFCGRITTVSCFQDNALLKSILSEPNPGG 84
Query 63 VLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKS 122
VLVIDG SLHTALVGD+IA L + GW G+IV+ A+RD+ A+ +D G KALGTNPRKS
Sbjct 85 VLVIDGQESLHTALVGDIIAGLGQKNGWAGVIVNAAIRDSKAIGDMDFGCKALGTNPRKS 144
Query 123 TKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
TKTGAGE+DV + GGV F PG+ Y+D DGIIV
Sbjct 145 TKTGAGEKDVVLRFGGVEFNPGEYVYADSDGIIV 178
>gi|334564209|ref|ZP_08517200.1| ribonuclease activity regulator protein RraA [Corynebacterium
bovis DSM 20582]
Length=181
Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/153 (63%), Positives = 123/153 (81%), Gaps = 0/153 (0%)
Query 4 SFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGV 63
+F PTADLVD IG DVRSCD QF FGG + F GP++TVRC QDN L+K++L +P+ GGV
Sbjct 19 TFIPTADLVDIIGEDVRSCDTQFGDFGGVTDFCGPVTTVRCHQDNGLVKAILREPNPGGV 78
Query 64 LVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKST 123
LV+DG S+HTAL+GD+IAE + GW G+I++GA+RD+AA+ G+ G KALGTNPRKS+
Sbjct 79 LVVDGGASVHTALMGDMIAESGVANGWAGVIINGAIRDSAAVAGMAFGCKALGTNPRKSS 138
Query 124 KTGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
K G GERDV +T+GGV FVPG +AY+D DGI+V
Sbjct 139 KAGEGERDVTVTIGGVEFVPGHVAYADADGIVV 171
>gi|340794262|ref|YP_004759725.1| regulator of ribonuclease activity [Corynebacterium variabile
DSM 44702]
gi|340534172|gb|AEK36652.1| regulator of ribonuclease activity [Corynebacterium variabile
DSM 44702]
Length=166
Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/154 (63%), Positives = 119/154 (78%), Gaps = 0/154 (0%)
Query 3 ISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGG 62
I+F PTADLVD IGPD RSCD QF GG + F GPI+T+RCFQDN L+K L + + GG
Sbjct 4 ITFIPTADLVDIIGPDARSCDTQFSNLGGHTDFCGPITTIRCFQDNGLIKKTLQEDNPGG 63
Query 63 VLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKS 122
VLV+DG S+HTAL+GD+IAE GW G+I++GA+RD+AA+ G++ G KALGTNPRKS
Sbjct 64 VLVVDGDASVHTALMGDMIAEFGVEHGWAGVIINGAIRDSAAVGGMEFGCKALGTNPRKS 123
Query 123 TKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
K GAGERDV + GGV FVPG IAY+D DG+IV
Sbjct 124 AKDGAGERDVVVHFGGVDFVPGHIAYADADGVIV 157
>gi|134098719|ref|YP_001104380.1| ribonuclease activity regulator protein RraA [Saccharopolyspora
erythraea NRRL 2338]
gi|291003594|ref|ZP_06561567.1| ribonuclease activity regulator protein RraA [Saccharopolyspora
erythraea NRRL 2338]
gi|226703233|sp|A4FBN0.1|RRAAH_SACEN RecName: Full=Putative regulator of ribonuclease activity
gi|133911342|emb|CAM01455.1| regulator of ribonuclease activity A [Saccharopolyspora erythraea
NRRL 2338]
Length=158
Score = 204 bits (519), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/150 (67%), Positives = 119/150 (80%), Gaps = 0/150 (0%)
Query 8 TADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVID 67
TADL D GP VRSCD+Q R +GGR+ F+G I TVRCFQDNALLK VLS P G VLV+D
Sbjct 5 TADLADREGPSVRSCDVQLRNYGGRAVFSGRIRTVRCFQDNALLKQVLSGPGEGDVLVVD 64
Query 68 GAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGA 127
G GS+HTAL+GD+IAEL RS GW+G++VHGAVRD+A L G++ G+KALGTNPRKSTKTG
Sbjct 65 GGGSVHTALIGDLIAELGRSNGWSGVVVHGAVRDSAVLAGMEFGVKALGTNPRKSTKTGE 124
Query 128 GERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
G D ++ GGV FVPG+ SD DGI+VV
Sbjct 125 GVLDEVVSFGGVDFVPGEHLVSDTDGIVVV 154
>gi|260578677|ref|ZP_05846585.1| regulator of ribonuclease activity A [Corynebacterium jeikeium
ATCC 43734]
gi|258603174|gb|EEW16443.1| regulator of ribonuclease activity A [Corynebacterium jeikeium
ATCC 43734]
Length=167
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/154 (63%), Positives = 119/154 (78%), Gaps = 0/154 (0%)
Query 3 ISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGG 62
++F PTADLVD IG DVRSCD QFR GG +F G I+TV+CFQDNALLKSVL + + GG
Sbjct 6 LTFIPTADLVDIIGSDVRSCDTQFRDLGGVVEFCGKITTVKCFQDNALLKSVLQEDNPGG 65
Query 63 VLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKS 122
VLVIDG S+HTALVGD+IA L + GW G++++G +RD+ + ++ G KALGTNPRKS
Sbjct 66 VLVIDGDASMHTALVGDIIAGLGKDHGWAGVVINGPIRDSKVIGQMEFGCKALGTNPRKS 125
Query 123 TKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
TKTG GERDV ++ GGV FVPG+ Y D DGIIV
Sbjct 126 TKTGEGERDVTVSFGGVDFVPGEYIYCDSDGIIV 159
>gi|68535977|ref|YP_250682.1| ribonuclease activity regulator protein RraA [Corynebacterium
jeikeium K411]
gi|123651126|sp|Q4JVU3.1|RRAAH_CORJK RecName: Full=Putative regulator of ribonuclease activity
gi|68263576|emb|CAI37064.1| S-adenosylmethionine:2-demethylmenaquinone methyltransferase
[Corynebacterium jeikeium K411]
Length=167
Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/154 (63%), Positives = 119/154 (78%), Gaps = 0/154 (0%)
Query 3 ISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGG 62
++F PTADLVD IG DVRSCD QFR GG +F G I+TV+CFQDNALLKSVL + + GG
Sbjct 6 LTFIPTADLVDIIGSDVRSCDTQFRDLGGVVEFCGKITTVKCFQDNALLKSVLQEDNPGG 65
Query 63 VLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKS 122
VLVIDG S+HTALVGD+IA L + GW G++++G +RD+ + ++ G KALGTNPRKS
Sbjct 66 VLVIDGDASMHTALVGDIIAGLGKDHGWAGVVINGPIRDSKVIGQMEFGCKALGTNPRKS 125
Query 123 TKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
TKTG GERDV ++ GGV F+PG+ Y D DGIIV
Sbjct 126 TKTGEGERDVTVSFGGVDFIPGEYIYCDSDGIIV 159
>gi|336325539|ref|YP_004605505.1| S-adenosylmethionine:2-demethylmenaquinonemethyltransferase [Corynebacterium
resistens DSM 45100]
gi|336101521|gb|AEI09341.1| S-adenosylmethionine:2-demethylmenaquinonemethyltransferase [Corynebacterium
resistens DSM 45100]
Length=197
Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 98/154 (64%), Positives = 120/154 (78%), Gaps = 0/154 (0%)
Query 3 ISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGG 62
++F PTADLVD IG DV+SCD QFR GGR +F G ISTV+CFQDNALLKS+LS+ + GG
Sbjct 35 LTFIPTADLVDIIGEDVQSCDTQFRDLGGRVEFCGKISTVKCFQDNALLKSILSEDNPGG 94
Query 63 VLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKS 122
VLVIDG S+ +ALVGD+IA L + GW G+IV+G +RD+ + G+D G KALGTNPRKS
Sbjct 95 VLVIDGRASMRSALVGDIIAGLGKGHGWAGVIVNGPIRDSKVIGGMDFGCKALGTNPRKS 154
Query 123 TKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
+KTG GERD+ ++LG V FVPG Y D DGIIV
Sbjct 155 SKTGDGERDIVVSLGSVDFVPGHYVYCDSDGIIV 188
>gi|145295083|ref|YP_001137904.1| ribonuclease activity regulator protein RraA [Corynebacterium
glutamicum R]
gi|140845003|dbj|BAF54002.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344043655|gb|EGV39344.1| ribonuclease activity regulator protein RraA [Corynebacterium
glutamicum S9114]
Length=168
Score = 197 bits (501), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 95/155 (62%), Positives = 122/155 (79%), Gaps = 0/155 (0%)
Query 2 AISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAG 61
A F TADLVD IG + +SCD QF+ GG ++F G I+TV+CFQDNALLKS+LS+ + G
Sbjct 7 APEFIATADLVDIIGDNAQSCDTQFQNLGGATEFHGTITTVKCFQDNALLKSILSEDNPG 66
Query 62 GVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRK 121
GVLVIDG S+HTALVGD+IA L + GW+G+IV+GA+RD+A + + G KALGTNPRK
Sbjct 67 GVLVIDGDASVHTALVGDIIAGLGKDHGWSGVIVNGAIRDSAVIGTMTFGCKALGTNPRK 126
Query 122 STKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
STKTG+GERDV +++GG+ F+PG Y+D DGIIV
Sbjct 127 STKTGSGERDVVVSIGGIDFIPGHYVYADSDGIIV 161
>gi|37088990|sp|Q8NRW6.1|RRAAH_CORGL RecName: Full=Putative regulator of ribonuclease activity
gi|21323691|dbj|BAB98318.1| Demethylmenaquinone methyltransferase [Corynebacterium glutamicum
ATCC 13032]
Length=166
Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 95/155 (62%), Positives = 122/155 (79%), Gaps = 0/155 (0%)
Query 2 AISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAG 61
A F TADLVD IG + +SCD QF+ GG ++F G I+TV+CFQDNALLKS+LS+ + G
Sbjct 5 APEFIATADLVDIIGDNAQSCDTQFQNLGGATEFHGIITTVKCFQDNALLKSILSEDNPG 64
Query 62 GVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRK 121
GVLVIDG S+HTALVGD+IA L + GW+G+IV+GA+RD+A + + G KALGTNPRK
Sbjct 65 GVLVIDGDASVHTALVGDIIAGLGKDHGWSGVIVNGAIRDSAVIGTMTFGCKALGTNPRK 124
Query 122 STKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
STKTG+GERDV +++GG+ F+PG Y+D DGIIV
Sbjct 125 STKTGSGERDVVVSIGGIDFIPGHYVYADSDGIIV 159
>gi|19552151|ref|NP_600153.1| ribonuclease activity regulator protein RraA [Corynebacterium
glutamicum ATCC 13032]
gi|62389815|ref|YP_225217.1| ribonuclease activity regulator protein RraA [Corynebacterium
glutamicum ATCC 13032]
gi|41325150|emb|CAF19631.1| S-ADENOSYLMETHIONINE:2-DEMETHYLMENAQUINONE METHYLT [Corynebacterium
glutamicum ATCC 13032]
Length=168
Score = 196 bits (499), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 95/155 (62%), Positives = 122/155 (79%), Gaps = 0/155 (0%)
Query 2 AISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAG 61
A F TADLVD IG + +SCD QF+ GG ++F G I+TV+CFQDNALLKS+LS+ + G
Sbjct 7 APEFIATADLVDIIGDNAQSCDTQFQNLGGATEFHGIITTVKCFQDNALLKSILSEDNPG 66
Query 62 GVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRK 121
GVLVIDG S+HTALVGD+IA L + GW+G+IV+GA+RD+A + + G KALGTNPRK
Sbjct 67 GVLVIDGDASVHTALVGDIIAGLGKDHGWSGVIVNGAIRDSAVIGTMTFGCKALGTNPRK 126
Query 122 STKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIV 156
STKTG+GERDV +++GG+ F+PG Y+D DGIIV
Sbjct 127 STKTGSGERDVVVSIGGIDFIPGHYVYADSDGIIV 161
>gi|152966448|ref|YP_001362232.1| regulator of ribonuclease activity A [Kineococcus radiotolerans
SRS30216]
gi|151360965|gb|ABS03968.1| regulator of ribonuclease activity A [Kineococcus radiotolerans
SRS30216]
Length=170
Score = 196 bits (498), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 94/150 (63%), Positives = 116/150 (78%), Gaps = 0/150 (0%)
Query 8 TADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVID 67
TADL D+ G + SCD RQFG F+G I TVRCF+DNALLKSVLS+ G VLV+D
Sbjct 19 TADLYDEHGKRLGSCDTPLRQFGAHRAFSGAIRTVRCFEDNALLKSVLSEAGHGQVLVVD 78
Query 68 GAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGA 127
GAGSLHTAL+GD+IA++A GW G+++HGAVRD A L GI++GIKALG+NPRKS KTGA
Sbjct 79 GAGSLHTALMGDMIADIATRNGWAGVVIHGAVRDVAVLAGIELGIKALGSNPRKSAKTGA 138
Query 128 GERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
GE+DV + GG TF PG +SDDDG++V+
Sbjct 139 GEKDVPVEFGGCTFTPGHHLWSDDDGVVVL 168
>gi|258650534|ref|YP_003199690.1| regulator of ribonuclease activity A [Nakamurella multipartita
DSM 44233]
gi|258553759|gb|ACV76701.1| regulator of ribonuclease activity A [Nakamurella multipartita
DSM 44233]
Length=157
Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/150 (63%), Positives = 117/150 (78%), Gaps = 0/150 (0%)
Query 8 TADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVID 67
TADL D+ G ++SCD QFRQFGGR F G ++TVRCFQDNALLKS+L P G VLVID
Sbjct 3 TADLYDEYGERLQSCDTQFRQFGGRRDFDGIVATVRCFQDNALLKSILGTPGQGRVLVID 62
Query 68 GAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGA 127
G GS+HTAL GD+IA+LA GW GL+++GAVRD+ AL + +GIKALGTNPRKS+KTGA
Sbjct 63 GGGSVHTALTGDLIAQLAVDHGWAGLVINGAVRDSVALGALPLGIKALGTNPRKSSKTGA 122
Query 128 GERDVEITLGGVTFVPGDIAYSDDDGIIVV 157
GE +V++ GG F PGD + DDDG++V+
Sbjct 123 GEHEVDLEFGGAIFRPGDHVWCDDDGVVVL 152
>gi|296269613|ref|YP_003652245.1| regulator of ribonuclease activity A [Thermobispora bispora DSM
43833]
gi|296092400|gb|ADG88352.1| regulator of ribonuclease activity A [Thermobispora bispora DSM
43833]
Length=159
Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/149 (62%), Positives = 116/149 (78%), Gaps = 0/149 (0%)
Query 8 TADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVID 67
TADL+D+ ++ SC+ QF Q+GGR+ FAGPI+T+RCF+DNAL+K VLS P G VLV+D
Sbjct 5 TADLIDEFDAELASCETQFIQYGGRTAFAGPIATIRCFRDNALVKRVLSGPGEGRVLVVD 64
Query 68 GAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGA 127
G GSL +AL+GDVIA A GW G++++GAVRD A LR +D+GIKALG+NPRKS K GA
Sbjct 65 GGGSLASALMGDVIARSAVENGWAGVVINGAVRDVATLRTLDLGIKALGSNPRKSAKDGA 124
Query 128 GERDVEITLGGVTFVPGDIAYSDDDGIIV 156
GE DV ++ GGV F PG YSD+DGI+V
Sbjct 125 GEVDVPVSFGGVEFRPGHWLYSDEDGIVV 153
>gi|209965633|ref|YP_002298548.1| regulator of ribonuclease activity A [Rhodospirillum centenum
SW]
gi|226703232|sp|B6IPN3.1|RRAAH_RHOCS RecName: Full=Putative regulator of ribonuclease activity
gi|209959099|gb|ACI99735.1| regulator of ribonuclease activity A [Rhodospirillum centenum
SW]
Length=160
Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 93/149 (63%), Positives = 111/149 (75%), Gaps = 0/149 (0%)
Query 8 TADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVID 67
TADL D + SC+ QFR +GGR+ F GPI TVRC QDNALLKS+LS P G VLV+D
Sbjct 5 TADLFDSHEDILESCETQFRSYGGRAAFHGPIRTVRCHQDNALLKSLLSTPGDGAVLVVD 64
Query 68 GAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGA 127
G GSL TALVGD+IA L GW G++VHGA+RD+ A+ G+DIG+KALG+NPRKSTKTGA
Sbjct 65 GGGSLRTALVGDLIAGLGVKNGWAGIVVHGAIRDSEAIGGLDIGLKALGSNPRKSTKTGA 124
Query 128 GERDVEITLGGVTFVPGDIAYSDDDGIIV 156
GE D + GG TF PG YSD DG++V
Sbjct 125 GEADRPVAFGGCTFTPGHWLYSDADGVVV 153
Lambda K H
0.320 0.140 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129486540748
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40