BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3856c Length=335 Score E Sequences producing significant alignments: (Bits) Value gi|15610992|ref|NP_218373.1| hypothetical protein Rv3856c [Mycob... 680 0.0 gi|344221696|gb|AEN02327.1| hypothetical protein MTCTRI2_3935 [M... 676 0.0 gi|294995166|ref|ZP_06800857.1| hypothetical protein Mtub2_11787... 629 2e-178 gi|296166989|ref|ZP_06849403.1| probable DNA polymerase beta cha... 613 9e-174 gi|342860110|ref|ZP_08716762.1| hypothetical protein MCOL_14565 ... 608 6e-172 gi|183985376|ref|YP_001853667.1| hypothetical protein MMAR_5407 ... 606 2e-171 gi|240168333|ref|ZP_04746992.1| hypothetical protein MkanA1_0341... 605 4e-171 gi|118620043|ref|YP_908375.1| hypothetical protein MUL_5029 [Myc... 602 3e-170 gi|254822702|ref|ZP_05227703.1| hypothetical protein MintA_22424... 598 5e-169 gi|118466787|ref|YP_879465.1| hypothetical protein MAV_0171 [Myc... 585 3e-165 gi|41406275|ref|NP_959111.1| hypothetical protein MAP0177 [Mycob... 583 9e-165 gi|254773228|ref|ZP_05214744.1| hypothetical protein MaviaA2_009... 583 1e-164 gi|126438003|ref|YP_001073694.1| hypothetical protein Mjls_5440 ... 580 1e-163 gi|108802024|ref|YP_642221.1| hypothetical protein Mmcs_5061 [My... 575 5e-162 gi|120406629|ref|YP_956458.1| hypothetical protein Mvan_5687 [My... 568 3e-160 gi|118470220|ref|YP_890658.1| hypothetical protein MSMEG_6445 [M... 568 5e-160 gi|145221713|ref|YP_001132391.1| hypothetical protein Mflv_1121 ... 559 2e-157 gi|315446551|ref|YP_004079430.1| PHP family phosphohydrolase, hi... 558 6e-157 gi|333989149|ref|YP_004521763.1| hypothetical protein JDM601_050... 541 6e-152 gi|169627202|ref|YP_001700851.1| hypothetical protein MAB_0097 [... 472 4e-131 gi|226362809|ref|YP_002780587.1| hypothetical protein ROP_33950 ... 451 6e-125 gi|111020584|ref|YP_703556.1| hypothetical protein RHA1_ro03595 ... 450 1e-124 gi|226309456|ref|YP_002769418.1| hypothetical protein RER_59710 ... 447 2e-123 gi|229491240|ref|ZP_04385068.1| PHP domain protein [Rhodococcus ... 444 8e-123 gi|54026152|ref|YP_120394.1| hypothetical protein nfa41810 [Noca... 444 1e-122 gi|333922069|ref|YP_004495650.1| putative DNA polymerase [Amycol... 433 2e-119 gi|325677365|ref|ZP_08157030.1| DNA polymerase beta chain [Rhodo... 425 5e-117 gi|336118963|ref|YP_004573735.1| hypothetical protein MLP_33180 ... 424 1e-116 gi|312141974|ref|YP_004009310.1| DNA polymerase [Rhodococcus equ... 424 1e-116 gi|229819561|ref|YP_002881087.1| hypothetical protein Bcav_1064 ... 421 8e-116 gi|284030507|ref|YP_003380438.1| PHP domain-containing protein [... 389 3e-106 gi|258654515|ref|YP_003203671.1| hypothetical protein Namu_4395 ... 384 1e-104 gi|297204244|ref|ZP_06921641.1| PHP domain-containing protein [S... 384 1e-104 gi|291002976|ref|ZP_06560949.1| hypothetical protein SeryN2_0044... 384 2e-104 gi|329936414|ref|ZP_08286179.1| DNA-dependent DNA polymerase bet... 383 2e-104 gi|155061096|gb|ABS90486.1| putative DNA polymerase beta chain [... 380 1e-103 gi|289773540|ref|ZP_06532918.1| conserved hypothetical protein [... 380 2e-103 gi|21219312|ref|NP_625091.1| hypothetical protein SCO0789 [Strep... 379 3e-103 gi|302555975|ref|ZP_07308317.1| PHP domain-containing protein [S... 379 3e-103 gi|116668963|ref|YP_829896.1| hypothetical protein Arth_0395 [Ar... 376 3e-102 gi|1518394|emb|CAA94729.1| ORF1 [Streptomyces lividans] 376 3e-102 gi|328880371|emb|CCA53610.1| DNA-dependent DNA polymerase beta c... 374 1e-101 gi|325961947|ref|YP_004239853.1| PHP family phosphohydrolase, hi... 374 1e-101 gi|284989047|ref|YP_003407601.1| PHP domain-containing protein [... 374 2e-101 gi|134100034|ref|YP_001105695.1| hypothetical protein SACE_3496 ... 373 2e-101 gi|345003870|ref|YP_004806724.1| PHP domain-containing protein [... 373 2e-101 gi|334337194|ref|YP_004542346.1| PHP domain protein [Isoptericol... 373 2e-101 gi|290955489|ref|YP_003486671.1| hypothetical protein SCAB_9211 ... 372 5e-101 gi|119962368|ref|YP_947284.1| hypothetical protein AAur_1516 [Ar... 372 6e-101 gi|117165003|emb|CAJ88555.1| putative phosphoesterase [Streptomy... 370 2e-100 >gi|15610992|ref|NP_218373.1| hypothetical protein Rv3856c [Mycobacterium tuberculosis H37Rv] gi|15843487|ref|NP_338524.1| hypothetical protein MT3971 [Mycobacterium tuberculosis CDC1551] gi|31795030|ref|NP_857523.1| hypothetical protein Mb3886c [Mycobacterium bovis AF2122/97] 76 more sequence titles Length=335 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/335 (100%), Positives = 335/335 (100%), Gaps = 0/335 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK Sbjct 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA Sbjct 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS Sbjct 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR Sbjct 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD Sbjct 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGSH 335 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGSH Sbjct 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGSH 335 >gi|344221696|gb|AEN02327.1| hypothetical protein MTCTRI2_3935 [Mycobacterium tuberculosis CTRI-2] Length=335 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/335 (99%), Positives = 334/335 (99%), Gaps = 0/335 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK Sbjct 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA Sbjct 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS Sbjct 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTR MVRAVANGHTDVLGHCTGRLIAGNRGIR Sbjct 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRPMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD Sbjct 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGSH 335 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGSH Sbjct 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGSH 335 >gi|294995166|ref|ZP_06800857.1| hypothetical protein Mtub2_11787 [Mycobacterium tuberculosis 210] Length=311 Score = 629 bits (1623), Expect = 2e-178, Method: Compositional matrix adjust. Identities = 311/311 (100%), Positives = 311/311 (100%), Gaps = 0/311 (0%) Query 25 MAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPKTAKVIAQAWSGREPDLLAELRADA 84 MAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPKTAKVIAQAWSGREPDLLAELRADA Sbjct 1 MAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPKTAKVIAQAWSGREPDLLAELRADA 60 Query 85 EDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATAAALGHQYCALTDHSPRLTIANGLS 144 EDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATAAALGHQYCALTDHSPRLTIANGLS Sbjct 61 EDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATAAALGHQYCALTDHSPRLTIANGLS 120 Query 145 PDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGSLDQEPEMLDRLDIVVASVHSKLSM 204 PDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGSLDQEPEMLDRLDIVVASVHSKLSM Sbjct 121 PDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGSLDQEPEMLDRLDIVVASVHSKLSM 180 Query 205 DSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIRPESKFDAEAVFTACREHGTAVEIN 264 DSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIRPESKFDAEAVFTACREHGTAVEIN Sbjct 181 DSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIRPESKFDAEAVFTACREHGTAVEIN 240 Query 265 SRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLDFLGYGAQRALDAEVPADRIVNTWP 324 SRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLDFLGYGAQRALDAEVPADRIVNTWP Sbjct 241 SRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLDFLGYGAQRALDAEVPADRIVNTWP 300 Query 325 ADTLLAWTGSH 335 ADTLLAWTGSH Sbjct 301 ADTLLAWTGSH 311 >gi|296166989|ref|ZP_06849403.1| probable DNA polymerase beta chain [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897669|gb|EFG77261.1| probable DNA polymerase beta chain [Mycobacterium parascrofulaceum ATCC BAA-614] Length=335 Score = 613 bits (1582), Expect = 9e-174, Method: Compositional matrix adjust. Identities = 297/335 (89%), Positives = 317/335 (95%), Gaps = 0/335 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV ALRQIAY+KDR+RHDPRRVMAYR AADIIEGLD AAR+RHGQANSWQSL GIGPK Sbjct 1 MDPVAALRQIAYFKDRSRHDPRRVMAYRKAADIIEGLDAAARERHGQANSWQSLPGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVI QAWSGREPDLL ELRA AEDLGGG +RAALRGDLHLHSNWSDGSAPI+EMMATA Sbjct 61 TAKVIDQAWSGREPDLLVELRAGAEDLGGGDVRAALRGDLHLHSNWSDGSAPIDEMMATA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 AALGH+YCALTDHSPRLTIANGLSP+RLR QLDVID+LRE+FAP+RILTGIEVDILEDGS Sbjct 121 AALGHEYCALTDHSPRLTIANGLSPERLRAQLDVIDKLREQFAPMRILTGIEVDILEDGS 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQEPE+L+RLD+VVASVHSKLSMD+AAMTRRMVRAV+N H DVLGHCTGRL++GNRGIR Sbjct 181 LDQEPELLERLDVVVASVHSKLSMDAAAMTRRMVRAVSNPHADVLGHCTGRLVSGNRGIR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 P+SKFDAEAVFTACREHGTAVEINSRPERRDPPTRLL LA DIGCVFSIDTDAHAPGQLD Sbjct 241 PQSKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLELALDIGCVFSIDTDAHAPGQLD 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGSH 335 F GYGAQRALDA VP DRIVNTWPA+ LL WTGS+ Sbjct 301 FFGYGAQRALDAGVPVDRIVNTWPAERLLQWTGSN 335 >gi|342860110|ref|ZP_08716762.1| hypothetical protein MCOL_14565 [Mycobacterium colombiense CECT 3035] gi|342132488|gb|EGT85717.1| hypothetical protein MCOL_14565 [Mycobacterium colombiense CECT 3035] Length=335 Score = 608 bits (1567), Expect = 6e-172, Method: Compositional matrix adjust. Identities = 293/335 (88%), Positives = 319/335 (96%), Gaps = 0/335 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV ALRQIAY+KDR+RHDPRRVMAYRNAADIIEGLD+A R+RHGQANSWQSL GIGPK Sbjct 1 MDPVAALRQIAYFKDRSRHDPRRVMAYRNAADIIEGLDEATRERHGQANSWQSLPGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVI QAWSGREPDLL ELRA AEDLGGG IR+ALRGDLHLHS+WSDGSAPI+EMMA+A Sbjct 61 TAKVIDQAWSGREPDLLVELRAGAEDLGGGDIRSALRGDLHLHSDWSDGSAPIDEMMASA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 AALGH+YCALTDHSPRLTIANGLSP+RLRKQLDVID LREKFAP+RILTGIEVDIL+DGS Sbjct 121 AALGHEYCALTDHSPRLTIANGLSPERLRKQLDVIDGLREKFAPMRILTGIEVDILDDGS 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQEPE+L+RLD+VVASVHSKLSMD+AAMTRRM+RAVAN H DVLGHCTGRL++GNRGIR Sbjct 181 LDQEPELLERLDVVVASVHSKLSMDAAAMTRRMLRAVANPHADVLGHCTGRLVSGNRGIR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PESKFDAEAVF ACR+HGTAVEINSRPERRDPPTRLL+LA +IGCVFSIDTDAHAPGQLD Sbjct 241 PESKFDAEAVFAACRDHGTAVEINSRPERRDPPTRLLNLALEIGCVFSIDTDAHAPGQLD 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGSH 335 FLGYGAQRALDA VP +RIVNTWPA+ LL WTG++ Sbjct 301 FLGYGAQRALDAGVPVERIVNTWPAEKLLEWTGAN 335 >gi|183985376|ref|YP_001853667.1| hypothetical protein MMAR_5407 [Mycobacterium marinum M] gi|183178702|gb|ACC43812.1| conserved hypothetical protein [Mycobacterium marinum M] Length=335 Score = 606 bits (1562), Expect = 2e-171, Method: Compositional matrix adjust. Identities = 293/331 (89%), Positives = 313/331 (95%), Gaps = 0/331 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV ALRQIAYYKDR+R DPRRVMAYRNAADIIE LD+ ARQRHG+ANSWQSL G+GPK Sbjct 1 MDPVAALRQIAYYKDRSRQDPRRVMAYRNAADIIERLDEDARQRHGRANSWQSLPGVGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVI+QAWSG+EPDLL ELR+ A+DLGGG IR ALRGDLHLHS WSDGSAPIEEMM TA Sbjct 61 TAKVISQAWSGQEPDLLVELRSAAQDLGGGQIRGALRGDLHLHSEWSDGSAPIEEMMDTA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 AALGH+YCALTDHSPRLTIANGLS +RLR+QLDVIDELRE+FAP+RILTGIEVDILEDGS Sbjct 121 AALGHEYCALTDHSPRLTIANGLSAERLRRQLDVIDELRERFAPMRILTGIEVDILEDGS 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQEPE+LDRLDIVVASVHSKLSM+SAAMTRRMVRAV+NGH DVLGHCTGRL+ GNRGIR Sbjct 181 LDQEPELLDRLDIVVASVHSKLSMESAAMTRRMVRAVSNGHADVLGHCTGRLVTGNRGIR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PESKFDAEAVFTACR+HGTAVEINSRPERRDPPTRLL+LARDIGCVFSIDTDAHAPGQLD Sbjct 241 PESKFDAEAVFTACRDHGTAVEINSRPERRDPPTRLLNLARDIGCVFSIDTDAHAPGQLD 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAW 331 FLGYGAQRALDA VPADRI+NTWP D LL W Sbjct 301 FLGYGAQRALDAGVPADRIINTWPVDRLLDW 331 >gi|240168333|ref|ZP_04746992.1| hypothetical protein MkanA1_03412 [Mycobacterium kansasii ATCC 12478] Length=335 Score = 605 bits (1559), Expect = 4e-171, Method: Compositional matrix adjust. Identities = 290/332 (88%), Positives = 313/332 (95%), Gaps = 0/332 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPVTALRQIAYYKDR+RHDPRRVMAYRNAAD+IE LDDAA +RHGQANSWQSL GIGPK Sbjct 1 MDPVTALRQIAYYKDRSRHDPRRVMAYRNAADLIEKLDDAALERHGQANSWQSLPGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVI QAWSGREPDLL ELR+ AEDLGGG +RAALRGDLHLHSNWSDGS PIEEMMATA Sbjct 61 TAKVIDQAWSGREPDLLIELRSAAEDLGGGTVRAALRGDLHLHSNWSDGSVPIEEMMATA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 A LGH+YCALTDHSPRLTIANGLSP+RLRKQLDVID+LR+ FAP+RILTGIEVDILEDG+ Sbjct 121 ADLGHEYCALTDHSPRLTIANGLSPERLRKQLDVIDQLRDNFAPMRILTGIEVDILEDGT 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQEPE+LDRLDIVVASVHSKL+MD+AAMTRRMVRAV NGH DVLGHCTGRL++GNRGIR Sbjct 181 LDQEPELLDRLDIVVASVHSKLAMDAAAMTRRMVRAVCNGHVDVLGHCTGRLVSGNRGIR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PESKFDAEAVFTACR+HGTAVEINSRPERRDPPTRLL+LA +IGC+FSIDTDAHAPGQLD Sbjct 241 PESKFDAEAVFTACRDHGTAVEINSRPERRDPPTRLLNLALEIGCLFSIDTDAHAPGQLD 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 FLGYGAQRALDA VP DR++N WPA+ LL W Sbjct 301 FLGYGAQRALDAGVPVDRVINAWPAERLLEWV 332 >gi|118620043|ref|YP_908375.1| hypothetical protein MUL_5029 [Mycobacterium ulcerans Agy99] gi|118572153|gb|ABL06904.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=335 Score = 602 bits (1551), Expect = 3e-170, Method: Compositional matrix adjust. Identities = 292/331 (89%), Positives = 312/331 (95%), Gaps = 0/331 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV ALRQIAYYKDR+R DPRRVMAYRNAADIIE LD+ ARQRHG+ANSWQSL GIGPK Sbjct 1 MDPVAALRQIAYYKDRSRQDPRRVMAYRNAADIIERLDEDARQRHGRANSWQSLPGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVI+QAWSG+EPDLL ELR+ A+DLGGG IR ALRGDLHLHS WSDGSAPIEE+M TA Sbjct 61 TAKVISQAWSGQEPDLLVELRSAAQDLGGGEIRGALRGDLHLHSEWSDGSAPIEELMDTA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 AALGH+YCALTDHSPRLTIANGLS +RLR+QLDVIDELRE+FAP+RILTGIEVDILEDGS Sbjct 121 AALGHEYCALTDHSPRLTIANGLSAERLRRQLDVIDELRERFAPMRILTGIEVDILEDGS 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQEPE+LDRLDIVVASVHSKLSM+SAAMTRRMVRAV+NGH DVLGHCTGRL+ GNRGIR Sbjct 181 LDQEPELLDRLDIVVASVHSKLSMESAAMTRRMVRAVSNGHADVLGHCTGRLVTGNRGIR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PESKFDAEAVFTACR+HGTAVEINSRPERRDPPTRLL+LARDIGCVFSIDTDAHAPGQLD Sbjct 241 PESKFDAEAVFTACRDHGTAVEINSRPERRDPPTRLLNLARDIGCVFSIDTDAHAPGQLD 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAW 331 FLGYGAQRALDA V ADRI+NTWP D LL W Sbjct 301 FLGYGAQRALDAGVAADRIINTWPVDRLLDW 331 >gi|254822702|ref|ZP_05227703.1| hypothetical protein MintA_22424 [Mycobacterium intracellulare ATCC 13950] Length=335 Score = 598 bits (1541), Expect = 5e-169, Method: Compositional matrix adjust. Identities = 300/335 (90%), Positives = 317/335 (95%), Gaps = 0/335 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV ALRQIAYYKDR+RHDPRRVMAYRNAADIIEGLDDAAR+RHGQANSWQSL GIGPK Sbjct 1 MDPVAALRQIAYYKDRSRHDPRRVMAYRNAADIIEGLDDAARERHGQANSWQSLPGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVI QAWSGREPDLL ELR+ AEDLGGG IRAALRGDLHLHSNWSDGSAPIEEMMA A Sbjct 61 TAKVIDQAWSGREPDLLVELRSTAEDLGGGDIRAALRGDLHLHSNWSDGSAPIEEMMAAA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 AALGH+YCALTDHSPRLTIANGLSP+RLRKQLDVID L+E FAP+RILTGIEVDIL+DGS Sbjct 121 AALGHEYCALTDHSPRLTIANGLSPERLRKQLDVIDRLQETFAPMRILTGIEVDILDDGS 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQEPE+L+RLD+VVASVHSKLSMDSAAMTRRM+RAV N H DVLGHCTGRL++GNRGIR Sbjct 181 LDQEPELLERLDVVVASVHSKLSMDSAAMTRRMLRAVENPHADVLGHCTGRLVSGNRGIR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PESKFDAEAVFTACRE GTAVEINSRPERRDPPTRLL+LA +IGCVFSIDTDAHAPGQLD Sbjct 241 PESKFDAEAVFTACRESGTAVEINSRPERRDPPTRLLNLALEIGCVFSIDTDAHAPGQLD 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGSH 335 FLGYGAQRALDA VP DRIVNTWPAD LL WTGS+ Sbjct 301 FLGYGAQRALDAGVPPDRIVNTWPADRLLEWTGSN 335 >gi|118466787|ref|YP_879465.1| hypothetical protein MAV_0171 [Mycobacterium avium 104] gi|118168074|gb|ABK68971.1| PHP domain protein [Mycobacterium avium 104] Length=334 Score = 585 bits (1509), Expect = 3e-165, Method: Compositional matrix adjust. Identities = 289/332 (88%), Positives = 313/332 (95%), Gaps = 0/332 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV ALRQIAYYKDR+RHDPRRVMAYRNAAD+IEGLD+A R+RHGQANSWQSL GIGPK Sbjct 1 MDPVVALRQIAYYKDRSRHDPRRVMAYRNAADVIEGLDEATRERHGQANSWQSLPGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVIAQAWSGREPD+L ELR+ AEDLGGG IR+ALRGDLH+HSNWSDGSAPIEEMMA A Sbjct 61 TAKVIAQAWSGREPDMLVELRSAAEDLGGGDIRSALRGDLHVHSNWSDGSAPIEEMMAAA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 AALGH+YCALTDHSPRLTIANGLSP+RLRKQLDVID L++ AP+RILTGIEVDILEDG Sbjct 121 AALGHEYCALTDHSPRLTIANGLSPERLRKQLDVIDRLQDTVAPMRILTGIEVDILEDGG 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQEPE+L+RLD+VVASVHSKLSMDSAAMTRRM+RAV N H DVLGHCTGRL++GNRGIR Sbjct 181 LDQEPELLERLDVVVASVHSKLSMDSAAMTRRMLRAVQNPHADVLGHCTGRLVSGNRGIR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLL+LA ++GCVFSIDTDAHAPGQL+ Sbjct 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLNLALEMGCVFSIDTDAHAPGQLE 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 FLGYGAQRALDA VP DRIVNTWPA+ LL WT Sbjct 301 FLGYGAQRALDAGVPVDRIVNTWPAERLLEWT 332 >gi|41406275|ref|NP_959111.1| hypothetical protein MAP0177 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394623|gb|AAS02494.1| hypothetical protein MAP_0177 [Mycobacterium avium subsp. paratuberculosis K-10] Length=334 Score = 583 bits (1504), Expect = 9e-165, Method: Compositional matrix adjust. Identities = 288/332 (87%), Positives = 313/332 (95%), Gaps = 0/332 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV ALRQIAYYKDR+RHDPRRVMAYRNAAD+IEGLD+A R+RHGQANSWQSL GIGPK Sbjct 1 MDPVVALRQIAYYKDRSRHDPRRVMAYRNAADVIEGLDEATRERHGQANSWQSLPGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVIAQAWSGREPD+L ELR+ AEDLGGG IR+ALRGDLH+HSNWSDGSAPIEEMMA A Sbjct 61 TAKVIAQAWSGREPDMLVELRSAAEDLGGGDIRSALRGDLHVHSNWSDGSAPIEEMMAAA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 AALGH+YCALTDHSPRLTIANGLSP+RLRKQLDVID L++ AP+RILTGIEVDILEDG Sbjct 121 AALGHEYCALTDHSPRLTIANGLSPERLRKQLDVIDRLQDTVAPMRILTGIEVDILEDGG 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQEPE+L+RLD+VVASVHS+LSMDSAAMTRRM+RAV N H DVLGHCTGRL++GNRGIR Sbjct 181 LDQEPELLERLDVVVASVHSELSMDSAAMTRRMLRAVQNPHADVLGHCTGRLVSGNRGIR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLL+LA ++GCVFSIDTDAHAPGQL+ Sbjct 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLNLALEMGCVFSIDTDAHAPGQLE 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 FLGYGAQRALDA VP DRIVNTWPA+ LL WT Sbjct 301 FLGYGAQRALDAGVPVDRIVNTWPAERLLEWT 332 >gi|254773228|ref|ZP_05214744.1| hypothetical protein MaviaA2_00901 [Mycobacterium avium subsp. avium ATCC 25291] Length=334 Score = 583 bits (1503), Expect = 1e-164, Method: Compositional matrix adjust. Identities = 289/332 (88%), Positives = 312/332 (94%), Gaps = 0/332 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV ALRQIAYYKDR+RHDPRRVMAYRNAADIIEGLD+A R+RHGQANSWQSL GIGPK Sbjct 1 MDPVVALRQIAYYKDRSRHDPRRVMAYRNAADIIEGLDEATRERHGQANSWQSLPGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVIAQAWSGREPD+L ELR+ AEDL GG IR+ALRGDLH+HSNWSDGSAPIEEMMA A Sbjct 61 TAKVIAQAWSGREPDMLVELRSAAEDLDGGDIRSALRGDLHVHSNWSDGSAPIEEMMAAA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 AALGH+YCALTDHSPRLTIANGLSP+RLRKQLDVID L++ AP+RILTGIEVDILEDG Sbjct 121 AALGHEYCALTDHSPRLTIANGLSPERLRKQLDVIDRLQDTVAPMRILTGIEVDILEDGG 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQEPE+L+RLD+VVASVHSKLSMDSAAMTRRM+RAV N H DVLGHCTGRL++GNRGIR Sbjct 181 LDQEPELLERLDVVVASVHSKLSMDSAAMTRRMLRAVQNPHADVLGHCTGRLVSGNRGIR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLL+LA ++GCVFSIDTDAHAPGQL+ Sbjct 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLNLALEMGCVFSIDTDAHAPGQLE 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 FLGYGAQRALDA VP DRIVNTWPA+ LL WT Sbjct 301 FLGYGAQRALDAGVPVDRIVNTWPAERLLEWT 332 >gi|126438003|ref|YP_001073694.1| hypothetical protein Mjls_5440 [Mycobacterium sp. JLS] gi|126237803|gb|ABO01204.1| PHP C-terminal domain protein [Mycobacterium sp. JLS] Length=334 Score = 580 bits (1494), Expect = 1e-163, Method: Compositional matrix adjust. Identities = 282/334 (85%), Positives = 304/334 (92%), Gaps = 0/334 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPVTALRQIAYYKDR R D RRVMAYRNAAD++E L +A R RHG A+SWQSL GIGPK Sbjct 1 MDPVTALRQIAYYKDRAREDSRRVMAYRNAADVVERLTEAERDRHGAADSWQSLPGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVIAQAW+GREPD+L ELR +A DLGGG IRAAL+GDLH+HSNWSDGSAPIEEMM A Sbjct 61 TAKVIAQAWAGREPDVLIELRENAVDLGGGEIRAALKGDLHVHSNWSDGSAPIEEMMLAA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 LGH+YC LTDHSPRLTIANGLSPDRLRKQLDVIDELRE APLRILTGIEVDILEDGS Sbjct 121 RDLGHEYCVLTDHSPRLTIANGLSPDRLRKQLDVIDELRESVAPLRILTGIEVDILEDGS 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQE E+L+RLD+VVASVHSKL+MD+ AMTRRM++AVAN HTDVLGHCTGRL+ GNRGIR Sbjct 181 LDQEEELLERLDVVVASVHSKLAMDAPAMTRRMLKAVANPHTDVLGHCTGRLVTGNRGIR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PESKFDAE VFTACR++GTAVEINSRPERRDPPTRLL LA DIGCVFSIDTD+HAPGQLD Sbjct 241 PESKFDAEKVFTACRDNGTAVEINSRPERRDPPTRLLKLALDIGCVFSIDTDSHAPGQLD 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGS 334 FLGYGAQRALDA VPA+RIVNTWPAD LLAWT S Sbjct 301 FLGYGAQRALDAGVPAERIVNTWPADDLLAWTSS 334 >gi|108802024|ref|YP_642221.1| hypothetical protein Mmcs_5061 [Mycobacterium sp. MCS] gi|119871176|ref|YP_941128.1| hypothetical protein Mkms_5149 [Mycobacterium sp. KMS] gi|108772443|gb|ABG11165.1| PHP-like protein [Mycobacterium sp. MCS] gi|119697265|gb|ABL94338.1| PHP C-terminal domain protein [Mycobacterium sp. KMS] Length=334 Score = 575 bits (1481), Expect = 5e-162, Method: Compositional matrix adjust. Identities = 279/334 (84%), Positives = 302/334 (91%), Gaps = 0/334 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPVTALRQIAY+KDR R D RRVMAYRNAAD++E L +A R RHG A+SWQSL GIGPK Sbjct 1 MDPVTALRQIAYFKDRAREDSRRVMAYRNAADVVERLTEAERDRHGAADSWQSLPGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVIAQAW+GREPD+L ELR A DLGGG IRAAL+GDLH+HSNWSDGSAPIEEMM A Sbjct 61 TAKVIAQAWAGREPDVLVELRESAVDLGGGEIRAALKGDLHVHSNWSDGSAPIEEMMLAA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 LGH+YC LTDHSPRLTIANGLSPDRLRKQLDVIDELRE APLRILTGIEVDILEDGS Sbjct 121 RDLGHEYCVLTDHSPRLTIANGLSPDRLRKQLDVIDELRESVAPLRILTGIEVDILEDGS 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQE ++L+RLD+VVASVHSKL+MD+ AMTRRM++AVAN HTDVLGHCTGRL+ GNRGIR Sbjct 181 LDQEEDLLERLDVVVASVHSKLAMDAPAMTRRMLKAVANPHTDVLGHCTGRLVTGNRGIR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PESKFDAE VFTACR++GTAVEINSRPERRDPPTRLL LA DIGCVFSIDTD+HAPGQLD Sbjct 241 PESKFDAEKVFTACRDNGTAVEINSRPERRDPPTRLLKLALDIGCVFSIDTDSHAPGQLD 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGS 334 FLGYGAQRALDA VP +RIVNTWPAD LLAWT S Sbjct 301 FLGYGAQRALDAGVPVERIVNTWPADDLLAWTTS 334 >gi|120406629|ref|YP_956458.1| hypothetical protein Mvan_5687 [Mycobacterium vanbaalenii PYR-1] gi|119959447|gb|ABM16452.1| PHP C-terminal domain protein [Mycobacterium vanbaalenii PYR-1] Length=335 Score = 568 bits (1465), Expect = 3e-160, Method: Compositional matrix adjust. Identities = 274/334 (83%), Positives = 301/334 (91%), Gaps = 0/334 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV ALRQIAYYKDR R DPRRVMAYRNAAD++E L DA R++HG ANSWQ+L IGPK Sbjct 1 MDPVIALRQIAYYKDRAREDPRRVMAYRNAADVVEALTDAQREKHGAANSWQTLPKIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVIAQAW+G EP +L ELR A+DLGGG IRAALRGDLH+HSNWSDGSAPIEEMM A Sbjct 61 TAKVIAQAWAGHEPAVLVELREAAQDLGGGDIRAALRGDLHVHSNWSDGSAPIEEMMLAA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 A+GH+YCALTDHSPRL IANGLSP+RLR+QLDVIDE+REK APLRILTGIEVDILEDGS Sbjct 121 RAIGHEYCALTDHSPRLRIANGLSPERLREQLDVIDEIREKVAPLRILTGIEVDILEDGS 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQEPE+L+RLD+VVASVHSKL+MD+AAMTRRM++AV N HTDVLGHCTGRL+ G RGIR Sbjct 181 LDQEPELLERLDVVVASVHSKLAMDAAAMTRRMLKAVTNPHTDVLGHCTGRLVTGGRGIR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PESKFDAE VFTACR+ GTAVEINSRPERRDPPTRLL LA DIGCVFSIDTD+HAPGQL+ Sbjct 241 PESKFDAEKVFTACRDAGTAVEINSRPERRDPPTRLLTLAMDIGCVFSIDTDSHAPGQLE 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGS 334 FLGYGAQRALD + A+RIVNTWPAD LLAWT S Sbjct 301 FLGYGAQRALDVGLEAERIVNTWPADQLLAWTRS 334 >gi|118470220|ref|YP_890658.1| hypothetical protein MSMEG_6445 [Mycobacterium smegmatis str. MC2 155] gi|118171507|gb|ABK72403.1| PHP domain protein [Mycobacterium smegmatis str. MC2 155] Length=334 Score = 568 bits (1463), Expect = 5e-160, Method: Compositional matrix adjust. Identities = 274/334 (83%), Positives = 298/334 (90%), Gaps = 0/334 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV ALRQIAYYKDR R DPRRVMAYRNAADI+EGL +A R R G N WQSL GIGPK Sbjct 1 MDPVIALRQIAYYKDRAREDPRRVMAYRNAADIVEGLTEAQRDRLGATNGWQSLPGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVIAQAW+GREPD L ELR +A DLGGG IRAALRGDLH+HSNWSDGSAPIEEMM A Sbjct 61 TAKVIAQAWAGREPDALVELRENAADLGGGDIRAALRGDLHVHSNWSDGSAPIEEMMMAA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 LGH+YCALTDHSPRL IANGLSPDRLR+QLDVIDELRE AP+RILTGIEVDILEDGS Sbjct 121 RDLGHEYCALTDHSPRLKIANGLSPDRLREQLDVIDELREAVAPMRILTGIEVDILEDGS 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQEPE+L+RLD+VVASVHSKL+MD AAMTRRM++AV N HTDVLGHCTGRL+ G RG+R Sbjct 181 LDQEPELLERLDVVVASVHSKLAMDEAAMTRRMIKAVTNPHTDVLGHCTGRLVTGGRGMR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PESKFDAE VFTACR+ GTAVEINSRPERRDPPTRLL+LA +IGCVFSIDTD+HAPGQL+ Sbjct 241 PESKFDAEKVFTACRDAGTAVEINSRPERRDPPTRLLNLALEIGCVFSIDTDSHAPGQLE 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGS 334 FLGYGAQRA+DA VPA+RIVNTWPA+ LL W S Sbjct 301 FLGYGAQRAVDAGVPAERIVNTWPAEALLEWAAS 334 >gi|145221713|ref|YP_001132391.1| hypothetical protein Mflv_1121 [Mycobacterium gilvum PYR-GCK] gi|145214199|gb|ABP43603.1| PHP C-terminal domain protein [Mycobacterium gilvum PYR-GCK] Length=334 Score = 559 bits (1441), Expect = 2e-157, Method: Compositional matrix adjust. Identities = 270/334 (81%), Positives = 299/334 (90%), Gaps = 0/334 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPVTALRQIAYYKDR R DPRRVMAYR AAD++E L DA R++HG ANSWQSL+ IGPK Sbjct 1 MDPVTALRQIAYYKDRAREDPRRVMAYRTAADVVESLTDAQREKHGVANSWQSLSKIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVIAQAW+G EPD+L ELR +AEDLGGG IRAALRGDLH+HSNWSDGSAPIEEMM A Sbjct 61 TAKVIAQAWAGAEPDVLVELRENAEDLGGGDIRAALRGDLHVHSNWSDGSAPIEEMMLAA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 LGH+YCALTDHSPRL IANGLSP+RLR+QLDVIDE+R+ AP+RILTGIEVDILEDGS Sbjct 121 RDLGHEYCALTDHSPRLRIANGLSPERLREQLDVIDEIRDTVAPMRILTGIEVDILEDGS 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQE E+L+RLDIVVASVHSKL+MD+ AMTRRM+ AVAN HTDVLGHCTGRL+ G RG+R Sbjct 181 LDQEDELLERLDIVVASVHSKLAMDAPAMTRRMLTAVANPHTDVLGHCTGRLVTGGRGMR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PESKFDAE VF+ CR+ GTAVEINSRPERRDPPTRLL+LA +IGCVFSIDTD+HAPGQL+ Sbjct 241 PESKFDAEKVFSLCRDAGTAVEINSRPERRDPPTRLLNLAMEIGCVFSIDTDSHAPGQLE 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGS 334 FLGYGAQRALDA + ADRIVNTWPA LL WT S Sbjct 301 FLGYGAQRALDAGLEADRIVNTWPAQRLLEWTSS 334 >gi|315446551|ref|YP_004079430.1| PHP family phosphohydrolase, histidinol phosphatase [Mycobacterium sp. Spyr1] gi|315264854|gb|ADU01596.1| PHP family phosphohydrolase, histidinol phosphatase [Mycobacterium sp. Spyr1] Length=334 Score = 558 bits (1437), Expect = 6e-157, Method: Compositional matrix adjust. Identities = 270/334 (81%), Positives = 298/334 (90%), Gaps = 0/334 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPVTALRQIAYYKDR R DPRRVMAYR AAD++E L DA R++HG ANSWQSL IGPK Sbjct 1 MDPVTALRQIAYYKDRAREDPRRVMAYRTAADVVESLTDAQREKHGVANSWQSLPKIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TAKVIAQAW+G EPD+L ELR +AEDLGGG IRAALRGDLH+HSNWSDGSAPIEEMM A Sbjct 61 TAKVIAQAWAGAEPDVLVELRENAEDLGGGDIRAALRGDLHVHSNWSDGSAPIEEMMLAA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 LGH+YCALTDHSPRL IANGLSP+RLR+QLDVIDE+R+ AP+RILTGIEVDILEDGS Sbjct 121 RDLGHEYCALTDHSPRLRIANGLSPERLREQLDVIDEIRDTVAPMRILTGIEVDILEDGS 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQE E+L+RLDIVVASVHSKL+MD+ AMTRRM+ AVAN HTDVLGHCTGRL+ G RG+R Sbjct 181 LDQEDELLERLDIVVASVHSKLAMDAPAMTRRMLTAVANPHTDVLGHCTGRLVTGGRGMR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PESKFDAE VF+ CR+ GTAVEINSRPERRDPPTRLL+LA +IGCVFSIDTD+HAPGQL+ Sbjct 241 PESKFDAEKVFSLCRDAGTAVEINSRPERRDPPTRLLNLAMEIGCVFSIDTDSHAPGQLE 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGS 334 FLGYGAQRALDA + ADRIVNTWPA LL WT S Sbjct 301 FLGYGAQRALDAGLEADRIVNTWPAQRLLEWTSS 334 >gi|333989149|ref|YP_004521763.1| hypothetical protein JDM601_0509 [Mycobacterium sp. JDM601] gi|333485117|gb|AEF34509.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=334 Score = 541 bits (1394), Expect = 6e-152, Method: Compositional matrix adjust. Identities = 263/331 (80%), Positives = 290/331 (88%), Gaps = 0/331 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV ALRQIA+YKDR R DPRRVMAYR AAD+IE L D R+RHG A SWQSL GIGPK Sbjct 1 MDPVEALRQIAFYKDRAREDPRRVMAYRRAADVIEALGDDERRRHGVAESWQSLPGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TA VIAQAW+G +PD L LR +A DLGGG +RAALRGDLHLHS+WSDGSAPIEEMM TA Sbjct 61 TAAVIAQAWAGGQPDTLVRLRDEAADLGGGVLRAALRGDLHLHSDWSDGSAPIEEMMTTA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 ALGH YCALTDHSPRLTIANGLSP RLR QL+VID LRE FAPLRILTGIEVDIL+DGS Sbjct 121 VALGHDYCALTDHSPRLTIANGLSPQRLRHQLEVIDGLREHFAPLRILTGIEVDILDDGS 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQEPE+L+RLDIVVASVHSKL+M+S AMTRRMVRAV++ +VLGHCTGRL+ G RG R Sbjct 181 LDQEPELLERLDIVVASVHSKLAMESGAMTRRMVRAVSDPRVNVLGHCTGRLVTGGRGRR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 ES+FDAEAVFTACREH TAVEIN RPERRDPPTRL+HLA ++GC+FSIDTDAHAPGQLD Sbjct 241 AESQFDAEAVFTACREHNTAVEINCRPERRDPPTRLMHLAHEVGCLFSIDTDAHAPGQLD 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAW 331 FLG+GAQRALDAE+ +RIVNTWP + LLAW Sbjct 301 FLGFGAQRALDAEIAIERIVNTWPVEDLLAW 331 >gi|169627202|ref|YP_001700851.1| hypothetical protein MAB_0097 [Mycobacterium abscessus ATCC 19977] gi|169239169|emb|CAM60197.1| Conserved hypothetical protein (PHP domain protein) [Mycobacterium abscessus] Length=336 Score = 472 bits (1214), Expect = 4e-131, Method: Compositional matrix adjust. Identities = 236/332 (72%), Positives = 276/332 (84%), Gaps = 0/332 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV+ALR+IAYYK+ R + RRVMAYR AA+II GL R+RHG +W+SL G+GPK Sbjct 1 MDPVSALREIAYYKELAREESRRVMAYRKAAEIIAGLSPQERERHGANKTWKSLTGLGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TA V A+AW+G+ P L +LRA+A+ GGGA+R AL+GDLHLHSNWSDGS PIEEMM+TA Sbjct 61 TATVAAEAWAGKVPATLEQLRANAKSTGGGAMREALKGDLHLHSNWSDGSVPIEEMMSTA 120 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 ALGH+YCALTDHSPRL +ANGLS DRLR QL VID +RE+ AP+RILTGIEVDIL+DG Sbjct 121 KALGHEYCALTDHSPRLRVANGLSADRLRTQLAVIDGMREQMAPMRILTGIEVDILDDGD 180 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQ+PE+L++LDIVVASVHSKL+MD+ AMTRRM+ AV N DVLGHCTGRL+ G RG R Sbjct 181 LDQDPELLEQLDIVVASVHSKLAMDADAMTRRMIAAVTNPRVDVLGHCTGRLVEGERGTR 240 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 ESKFDA VF ACR+ GTA+EINSRPERRDPP RLL LA +IGC FSIDTDAHAPGQL+ Sbjct 241 GESKFDAAEVFRACRDSGTAIEINSRPERRDPPRRLLDLALNIGCDFSIDTDAHAPGQLE 300 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 F GYG +RAL+A VP DR++NTWP D LLAWT Sbjct 301 FSGYGCERALEAGVPEDRVINTWPVDQLLAWT 332 >gi|226362809|ref|YP_002780587.1| hypothetical protein ROP_33950 [Rhodococcus opacus B4] gi|226241294|dbj|BAH51642.1| hypothetical protein [Rhodococcus opacus B4] Length=332 Score = 451 bits (1161), Expect = 6e-125, Method: Compositional matrix adjust. Identities = 223/331 (68%), Positives = 263/331 (80%), Gaps = 1/331 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV ALR+ A++ +R+R + RV AYR AAD++ L + R + +SW+ L GIGPK Sbjct 1 MDPVQALRETAFWLERSRAETHRVKAYRRAADVVAELSEEQRDVRRRTDSWKDLPGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TA VI +A G P LAELR AE +GGGA+R AL+GDLH HS+WSDG +PI+EMM +A Sbjct 61 TATVIREALDG-VPVYLAELREGAEPIGGGALRQALKGDLHTHSDWSDGGSPIDEMMRSA 119 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 A +GH+YCALTDHSPRLT+ANGLS +RLR QLDVI EL E+ AP RILTGIEVDIL+DGS Sbjct 120 ALIGHEYCALTDHSPRLTVANGLSAERLRSQLDVIAELNEELAPFRILTGIEVDILDDGS 179 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQ+P++LD LDIVVASVHSKL + AMTRRMVRAV N DVLGHCTGRL+ G RG R Sbjct 180 LDQDPDLLDELDIVVASVHSKLRAERGAMTRRMVRAVENPLVDVLGHCTGRLVEGGRGTR 239 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PES FDAE VFTACR+HGTAVEINSRPERRDPP+RL+ LA D+GC+FSIDTDAHAPGQL Sbjct 240 PESTFDAEQVFTACRDHGTAVEINSRPERRDPPSRLIDLAMDVGCLFSIDTDAHAPGQLA 299 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAW 331 + GYG +RA+ V ADR+VNTW AD LL W Sbjct 300 WQGYGCERAMRCGVEADRVVNTWSADDLLEW 330 >gi|111020584|ref|YP_703556.1| hypothetical protein RHA1_ro03595 [Rhodococcus jostii RHA1] gi|110820114|gb|ABG95398.1| possible DNA polymerase [Rhodococcus jostii RHA1] Length=338 Score = 450 bits (1158), Expect = 1e-124, Method: Compositional matrix adjust. Identities = 222/331 (68%), Positives = 265/331 (81%), Gaps = 1/331 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV ALR+ A++ +R+R + RV AYR AAD++ L + R + +SW+ L GIGPK Sbjct 7 MDPVQALRETAFWLERSRAETHRVKAYRRAADVVAELSEEQRDVRRRTDSWKDLPGIGPK 66 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TA VI ++ G P LAELR +AE +GGGA+R AL+GDLH HS+WSDG +PI+EMM +A Sbjct 67 TATVIRESLDG-VPVYLAELRENAEPIGGGALREALKGDLHTHSDWSDGGSPIDEMMRSA 125 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 AALGH+YCALTDHSPRLT+ANGLS +RLR QL+VI EL E+ AP RILTGIEVDIL+DGS Sbjct 126 AALGHEYCALTDHSPRLTVANGLSAERLRSQLEVIAELNEELAPFRILTGIEVDILDDGS 185 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQ+P++LD LDIVVASVHSKL + AMTRRMVRAV N DVLGHCTGRL+ G RG R Sbjct 186 LDQDPDLLDELDIVVASVHSKLRAERGAMTRRMVRAVENPLVDVLGHCTGRLVEGGRGTR 245 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PES FDAE VFTACR++GTAVEINSRPERRDPP+RL+ LA D+GC+FSIDTDAHAPGQL Sbjct 246 PESTFDAEQVFTACRDNGTAVEINSRPERRDPPSRLIDLAMDLGCLFSIDTDAHAPGQLA 305 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAW 331 + GYG +RA+ V ADR+VNTW AD LL W Sbjct 306 WQGYGCERAMRCGVEADRVVNTWSADDLLEW 336 >gi|226309456|ref|YP_002769418.1| hypothetical protein RER_59710 [Rhodococcus erythropolis PR4] gi|226188575|dbj|BAH36679.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=333 Score = 447 bits (1149), Expect = 2e-123, Method: Compositional matrix adjust. Identities = 219/334 (66%), Positives = 261/334 (79%), Gaps = 1/334 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 M+P ALR+IAY+ +R+R + RV AYR AA++ GL D ++ +A+SW++L GIGPK Sbjct 1 MEPDEALREIAYWLERSRAETHRVKAYRRAAEVFAGLSDEQKESRRKADSWKALTGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TA +IAQ++ G P+ L ELR AE +G G +R ALRGDLH HS+WSDG +PIEEMM A Sbjct 61 TAMIIAQSYDGV-PEYLEELRGQAEPIGDGPLRQALRGDLHTHSDWSDGGSPIEEMMRRA 119 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 AALGH YCALTDHSPRLT+ANGLS +RLR QLDVI L + AP RILTGIEVDILEDGS Sbjct 120 AALGHDYCALTDHSPRLTVANGLSAERLRSQLDVIAGLNAELAPFRILTGIEVDILEDGS 179 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQ+P++LD LDIVVASVHSKL + AMTRRM+ AV N D+LGHCTGRL+ G RG R Sbjct 180 LDQDPDLLDELDIVVASVHSKLRSEREAMTRRMLAAVRNPRVDILGHCTGRLVEGARGTR 239 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PES+FDAE VF ACRE GTAVEINSRPERRDPP+RL+ LARD+ C+FSIDTDAHAPGQL Sbjct 240 PESQFDAEKVFEACRESGTAVEINSRPERRDPPSRLIELARDLDCLFSIDTDAHAPGQLA 299 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGS 334 + GYG RA V ADR++NTW A+ LL W G+ Sbjct 300 WQGYGCDRAEKCGVEADRVINTWTAENLLEWAGN 333 >gi|229491240|ref|ZP_04385068.1| PHP domain protein [Rhodococcus erythropolis SK121] gi|229321978|gb|EEN87771.1| PHP domain protein [Rhodococcus erythropolis SK121] Length=333 Score = 444 bits (1143), Expect = 8e-123, Method: Compositional matrix adjust. Identities = 218/334 (66%), Positives = 260/334 (78%), Gaps = 1/334 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 M+P ALR+IAY+ +R+R + RV AYR AA++ GL D ++ +A+SW++L GIGPK Sbjct 1 MEPDEALREIAYWLERSRAETHRVKAYRRAAEVFSGLSDEQKESRRKADSWKALTGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 TA +IAQ++ G P+ L ELR AE +G +R ALRGDLH HS+WSDG +PIEEMM A Sbjct 61 TATIIAQSYDGI-PEYLEELRGQAEPIGDSPLRQALRGDLHTHSDWSDGGSPIEEMMRRA 119 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 AALGH YCALTDHSPRLT+ANGLS +RLR QLDVI L + AP RILTGIEVDILEDGS Sbjct 120 AALGHDYCALTDHSPRLTVANGLSAERLRSQLDVIAGLNAELAPFRILTGIEVDILEDGS 179 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQ+P++LD LDIVVASVHSKL + AMTRRM+ AV N D+LGHCTGRL+ G RG R Sbjct 180 LDQDPDLLDELDIVVASVHSKLRSEREAMTRRMLAAVRNPRVDILGHCTGRLVEGARGTR 239 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PES+FDAE VF ACRE GTAVEINSRPERRDPP+RL+ LARD+ C+FSIDTDAHAPGQL Sbjct 240 PESQFDAEKVFEACRESGTAVEINSRPERRDPPSRLIELARDLDCLFSIDTDAHAPGQLA 299 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGS 334 + GYG RA V ADR++NTW A+ LL W G+ Sbjct 300 WQGYGCDRAEKCGVEADRVINTWTAEDLLEWAGN 333 >gi|54026152|ref|YP_120394.1| hypothetical protein nfa41810 [Nocardia farcinica IFM 10152] gi|54017660|dbj|BAD59030.1| putative DNA polymerase [Nocardia farcinica IFM 10152] Length=351 Score = 444 bits (1141), Expect = 1e-122, Method: Compositional matrix adjust. Identities = 218/335 (66%), Positives = 258/335 (78%), Gaps = 2/335 (0%) Query 3 PVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPKTA 62 PV ALR+I ++ +R R + RV AYR AA+++ GL + H A+SWQ L GIGPKTA Sbjct 16 PVEALREIGFWLERARAETHRVKAYRRAAEVVAGLTEPEVAAHAAAHSWQELPGIGPKTA 75 Query 63 KVIAQAWSGREPDLLAELRADAEDLG--GGAIRAALRGDLHLHSNWSDGSAPIEEMMATA 120 VIAQA +G P LAELR A +G G +R LRGDLH HSNWSDG +PIEEMM A Sbjct 76 AVIAQACAGEVPAYLAELRRAAAPIGAPGKPLRQLLRGDLHTHSNWSDGGSPIEEMMRVA 135 Query 121 AALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGS 180 AALGH+YCALTDHSPRLT+ANGLS DRLR+QLDV+ EL E+ AP RILTGIEVDIL+DG+ Sbjct 136 AALGHEYCALTDHSPRLTVANGLSADRLRRQLDVVAELNERLAPFRILTGIEVDILDDGT 195 Query 181 LDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIR 240 LDQ ++L LD+VVASVHS L +S MT+RMV AVAN H DVLGHCTGRL+ G RG R Sbjct 196 LDQRADLLAELDVVVASVHSHLRAESEVMTKRMVYAVANPHVDVLGHCTGRLVTGGRGTR 255 Query 241 PESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLD 300 PES FDAE VF ACR++GTAVEINSRPER DPP+RLL LA ++GC+F+IDTDAHAPGQLD Sbjct 256 PESTFDAEMVFEACRQYGTAVEINSRPERLDPPSRLLTLAVEMGCLFAIDTDAHAPGQLD 315 Query 301 FLGYGAQRALDAEVPADRIVNTWPADTLLAWTGSH 335 +LGYG +RA+ V +R++NTWP LL WT SH Sbjct 316 WLGYGCERAVANGVAPERVINTWPVADLLTWTRSH 350 >gi|333922069|ref|YP_004495650.1| putative DNA polymerase [Amycolicicoccus subflavus DQS3-9A1] gi|333484290|gb|AEF42850.1| Possible DNA polymerase [Amycolicicoccus subflavus DQS3-9A1] Length=334 Score = 433 bits (1113), Expect = 2e-119, Method: Compositional matrix adjust. Identities = 215/334 (65%), Positives = 257/334 (77%), Gaps = 3/334 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV ALR++A++ +R+R + RV A+R AAD++ GL R + Q ++W SL GIGPK Sbjct 1 MDPVEALREVAFWLERSRAETHRVRAFRRAADVVAGLSMDQRAKKQQTDTWTSLPGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAE--DLGGGAIRAALRGDLHLHSNWSDGSAPIEEMMA 118 TA VI +++ G P+ L L+ AE LGG +R AL+GDLH HSNWSDG +PI EMMA Sbjct 61 TAAVIRESFHG-VPEYLRTLQESAEPIGLGGQELRTALKGDLHTHSNWSDGGSPIAEMMA 119 Query 119 TAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILED 178 A ALGH YCALTDHSPRLTIANGLS +RLR QL+V+ EL + AP RILTGIEVDIL+D Sbjct 120 RAKALGHDYCALTDHSPRLTIANGLSAERLRTQLNVVAELNTELAPFRILTGIEVDILDD 179 Query 179 GSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRG 238 GSLDQ E+L LD+VVASVHS L + AMTRRMVRAV N H DVLGHCTGRL+ G RG Sbjct 180 GSLDQHEELLAELDVVVASVHSNLRAEKNAMTRRMVRAVQNPHVDVLGHCTGRLVEGGRG 239 Query 239 IRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQ 298 RPESKFDA+ VF+ACR+ GTAVEIN+RPERRDPP+RL+ LA DIGC+FSIDTDAHAPGQ Sbjct 240 KRPESKFDADRVFSACRDFGTAVEINARPERRDPPSRLIDLALDIGCLFSIDTDAHAPGQ 299 Query 299 LDFLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 LD+ GYG +RA + V R++NTWP LLAWT Sbjct 300 LDWQGYGCERAAERGVEPSRVINTWPLHELLAWT 333 >gi|325677365|ref|ZP_08157030.1| DNA polymerase beta chain [Rhodococcus equi ATCC 33707] gi|325551828|gb|EGD21525.1| DNA polymerase beta chain [Rhodococcus equi ATCC 33707] Length=341 Score = 425 bits (1092), Expect = 5e-117, Method: Compositional matrix adjust. Identities = 211/331 (64%), Positives = 254/331 (77%), Gaps = 1/331 (0%) Query 3 PVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPKTA 62 PV ALR++A++ +R+R RV AYR AAD++ GL D R+ ++ W SL G+G KTA Sbjct 6 PVEALREVAFWLERDRAVTYRVKAYRRAADVVAGLTDEQRRARERSGDWTSLPGVGAKTA 65 Query 63 KVIAQAWSGREPDLLAELRADAEDLG-GGAIRAALRGDLHLHSNWSDGSAPIEEMMATAA 121 V+ QA +G+ PD L +LR AE +G GG ++ ALRGDLH+HS+WSDG +PI+EMM AA Sbjct 66 AVVEQAVAGKVPDYLQQLRDAAEPIGYGGDLQPALRGDLHVHSDWSDGGSPIDEMMRAAA 125 Query 122 ALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGSL 181 LGH+YCALTDHSPRLTIANGLS +RLR QL + EL + AP RILTGIEVDIL+DG+L Sbjct 126 TLGHEYCALTDHSPRLTIANGLSAERLRTQLTAVRELNRELAPFRILTGIEVDILDDGAL 185 Query 182 DQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIRP 241 DQEPE+LD LD+VVASVHS L D A MTRRM+ AV N +VLGHCTGRL+ G RG RP Sbjct 186 DQEPELLDELDVVVASVHSHLRADRAEMTRRMLGAVRNPRVNVLGHCTGRLVEGARGGRP 245 Query 242 ESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLDF 301 ESKFDAE VF ACR+H AVEINSRPERRDPP+RL+ LA DIGC+F+IDTDAHAPGQL + Sbjct 246 ESKFDAEKVFEACRDHDVAVEINSRPERRDPPSRLIDLAVDIGCLFAIDTDAHAPGQLAW 305 Query 302 LGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 G G +RA+ V A R+VNTWP D LL WT Sbjct 306 QGLGCERAIRCGVEAARVVNTWPVDELLTWT 336 >gi|336118963|ref|YP_004573735.1| hypothetical protein MLP_33180 [Microlunatus phosphovorus NM-1] gi|334686747|dbj|BAK36332.1| hypothetical protein MLP_33180 [Microlunatus phosphovorus NM-1] Length=338 Score = 424 bits (1090), Expect = 1e-116, Method: Compositional matrix adjust. Identities = 206/336 (62%), Positives = 251/336 (75%), Gaps = 2/336 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 M+PV ALR+I + +R R D RV AYR AADI+ LD A R RH +A+ W+ L GIGPK Sbjct 1 MNPVDALREIGFLLERTRSDTHRVKAYRRAADIVAELDPAERARHAEADDWKKLPGIGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDL--GGGAIRAALRGDLHLHSNWSDGSAPIEEMMA 118 TA VI+QA +GR PD L +LR + + L GG +RA ++GDLH+HS WSDG +P+EEMM Sbjct 61 TALVISQACAGRVPDYLQQLRDEKQPLVVGGERLRAMIKGDLHVHSTWSDGGSPLEEMMI 120 Query 119 TAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILED 178 TA +LG+ YCA+TDHSPRLT+A GL+ +RLR+Q V +L AP R+L GIEVDILED Sbjct 121 TARSLGYDYCAITDHSPRLTVARGLTAERLRQQQAVTRDLAAAMAPFRVLQGIEVDILED 180 Query 179 GSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRG 238 G LDQ+ +L LD+VVASVHSKL DS MT RMV +AN T++LGHCTGRLI G RG Sbjct 181 GGLDQDDALLAELDVVVASVHSKLRSDSETMTHRMVAGIANPRTNILGHCTGRLITGERG 240 Query 239 IRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQ 298 IRPES FDAE VF ACR G AVEINSRPERRDPPTRLL LA D+GC+FSIDTDAHAPGQ Sbjct 241 IRPESSFDAEVVFEACRAFGVAVEINSRPERRDPPTRLLQLAIDMGCLFSIDTDAHAPGQ 300 Query 299 LDFLGYGAQRALDAEVPADRIVNTWPADTLLAWTGS 334 L+F+ YG +RA + +R++NTWP D LL+W + Sbjct 301 LEFMAYGCERAEALGLEPERVINTWPVDQLLSWCAA 336 >gi|312141974|ref|YP_004009310.1| DNA polymerase [Rhodococcus equi 103S] gi|311891313|emb|CBH50634.1| putative DNA polymerase [Rhodococcus equi 103S] Length=341 Score = 424 bits (1090), Expect = 1e-116, Method: Compositional matrix adjust. Identities = 210/331 (64%), Positives = 254/331 (77%), Gaps = 1/331 (0%) Query 3 PVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPKTA 62 PV ALR++A++ +R+R RV AYR AAD++ GL D R+ ++ W SL G+G KTA Sbjct 6 PVEALREVAFWLERDRAVTYRVKAYRRAADVVAGLTDEQRRARERSGDWTSLPGVGAKTA 65 Query 63 KVIAQAWSGREPDLLAELRADAEDLG-GGAIRAALRGDLHLHSNWSDGSAPIEEMMATAA 121 V+ QA +G+ PD L +LR AE +G GG ++ ALRGDLH+HS+WSDG +PI+EMM AA Sbjct 66 AVVEQAVAGKVPDYLQQLRDAAEPIGYGGDLQPALRGDLHVHSDWSDGGSPIDEMMRAAA 125 Query 122 ALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGSL 181 +GH+YCALTDHSPRLTIANGLS +RLR QL + EL + AP RILTGIEVDIL+DG+L Sbjct 126 TIGHEYCALTDHSPRLTIANGLSAERLRTQLTAVRELNRELAPFRILTGIEVDILDDGAL 185 Query 182 DQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIRP 241 DQEPE+LD LD+VVASVHS L D A MTRRM+ AV N +VLGHCTGRL+ G RG RP Sbjct 186 DQEPELLDELDVVVASVHSHLRADRAEMTRRMLGAVRNPRVNVLGHCTGRLVEGARGGRP 245 Query 242 ESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLDF 301 ESKFDAE VF ACR+H AVEINSRPERRDPP+RL+ LA DIGC+F+IDTDAHAPGQL + Sbjct 246 ESKFDAEKVFEACRDHDVAVEINSRPERRDPPSRLIDLAVDIGCLFAIDTDAHAPGQLAW 305 Query 302 LGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 G G +RA+ V A R+VNTWP D LL WT Sbjct 306 QGLGCERAIRCGVEAARVVNTWPVDELLTWT 336 >gi|229819561|ref|YP_002881087.1| hypothetical protein Bcav_1064 [Beutenbergia cavernae DSM 12333] gi|229565474|gb|ACQ79325.1| PHP domain protein [Beutenbergia cavernae DSM 12333] Length=339 Score = 421 bits (1082), Expect = 8e-116, Method: Compositional matrix adjust. Identities = 209/337 (63%), Positives = 252/337 (75%), Gaps = 5/337 (1%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV ALR+IA++++R R D RV AYR AAD++E L D R + W L G+GP Sbjct 1 MDPVEALREIAFWRERARADTHRVRAYRRAADVVEQLTDRQRAQRRTEAEWTRLPGVGPS 60 Query 61 TAKVIAQAWSGREPDLLAELRADA-----EDLGGGAIRAALRGDLHLHSNWSDGSAPIEE 115 TA+VI QA +G EP LAE RA A D G ++ AA+RGDLH+H++ SDG +P+ E Sbjct 61 TARVIVQALAGTEPTALAEARASAVPVLAPDDDGASLLAAVRGDLHVHTSESDGGSPLGE 120 Query 116 MMATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDI 175 M A LG +Y A+TDHSPRLT+A GL P+RLR QLD + L + AP R+LTGIEVDI Sbjct 121 MAGVARRLGREYIAITDHSPRLTVARGLKPERLRAQLDAVARLNAEIAPFRVLTGIEVDI 180 Query 176 LEDGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAG 235 EDGSLDQEPE+L RLD+VVASVHS+L M+++AMTRRMVRAVAN H DVLGHCTGRL+ G Sbjct 181 NEDGSLDQEPELLARLDVVVASVHSELRMEASAMTRRMVRAVANPHVDVLGHCTGRLVEG 240 Query 236 NRGIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHA 295 NRG RP S+FDAE VF ACR + AVEINSRPERRDPP LL LA + GC+FSID+DAHA Sbjct 241 NRGTRPPSQFDAEIVFEACRAYDVAVEINSRPERRDPPMELLGLAVETGCLFSIDSDAHA 300 Query 296 PGQLDFLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 PGQLD+LGYG RA A VPA+R++ TWP + LLAWT Sbjct 301 PGQLDWLGYGCSRAAAAGVPAERVITTWPVEDLLAWT 337 >gi|284030507|ref|YP_003380438.1| PHP domain-containing protein [Kribbella flavida DSM 17836] gi|283809800|gb|ADB31639.1| PHP domain protein [Kribbella flavida DSM 17836] Length=351 Score = 389 bits (999), Expect = 3e-106, Method: Compositional matrix adjust. Identities = 207/337 (62%), Positives = 238/337 (71%), Gaps = 6/337 (1%) Query 4 VTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPKTAK 63 V ALR I YY +R+R RV AYR AAD IE L A + +A + L GIGPKT Sbjct 15 VEALRAIGYYLERDRQPTHRVKAYRRAADTIEALPAAEVRARRRAGTLTELPGIGPKTEA 74 Query 64 VIAQAWSGREPDLLAELRADAEDL--GGGAIRAALRGDLHLHSNWSDGSAPIEEMMATAA 121 VI +A G P L +L AEDL G A+R+AL+ DLHLHS+WSDG +PIEEM TAA Sbjct 75 VIVEAMDGATPAYLVKLEQGAEDLTKAGTALRSALKADLHLHSDWSDGGSPIEEMARTAA 134 Query 122 ALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAP----LRILTGIEVDILE 177 LGH+Y ALTDHSPRLT+ANGLS +R +QLDV+ EL +K A IL GIEVDIL+ Sbjct 135 RLGHRYMALTDHSPRLTVANGLSRERRLQQLDVVAELNKKLADELDGFTILNGIEVDILD 194 Query 178 DGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNR 237 DGSLD + E+L RLD+VVASVHSKL M S MT RMVRA+AN H DVLGHCTGRL+ G R Sbjct 195 DGSLDCDTEILARLDLVVASVHSKLRMASEPMTERMVRAIANPHVDVLGHCTGRLVTGGR 254 Query 238 GIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPG 297 G RPES FDAE VF ACR+ GTAVEINSRPER DPP RLL LA + GC FSIDTDAHAPG Sbjct 255 GTRPESDFDAEVVFEACRQFGTAVEINSRPERLDPPKRLLTLAVETGCQFSIDTDAHAPG 314 Query 298 QLDFLGYGAQRALDAEVPADRIVNTWPADTLLAWTGS 334 QLD+ YG +RA + V D ++NTW LL WT S Sbjct 315 QLDWQVYGCERAEECGVDPDSVINTWDQQALLDWTNS 351 >gi|258654515|ref|YP_003203671.1| hypothetical protein Namu_4395 [Nakamurella multipartita DSM 44233] gi|258557740|gb|ACV80682.1| PHP domain protein [Nakamurella multipartita DSM 44233] Length=337 Score = 384 bits (985), Expect = 1e-104, Method: Compositional matrix adjust. Identities = 196/334 (59%), Positives = 234/334 (71%), Gaps = 2/334 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDP+ ALR+I + +R R RV A+RNAA + GL R + L GIG Sbjct 1 MDPIAALRRIGFLLERERAPTYRVRAFRNAALTLAGLRPDELDRRAADGTLTELPGIGKT 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDL--GGGAIRAALRGDLHLHSNWSDGSAPIEEMMA 118 T VI QA +G+ P LA+L A + L GG IRA LRGDLH HS+WSDG +PI+EM Sbjct 61 TGTVIGQALAGQVPQYLADLEAGVQPLTTGGEGIRAQLRGDLHAHSDWSDGGSPIQEMTV 120 Query 119 TAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILED 178 TA LGH+Y ALTDHSPRL +ANGLS DRLR+QL ++ L E R+L+GIE DI +D Sbjct 121 TAQELGHEYQALTDHSPRLKVANGLSADRLRRQLRIVATLNEHLGDFRLLSGIECDINDD 180 Query 179 GSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRG 238 G+LDQ ++L R+D+VVASVHSKL DS +MTRRM+RA+A+ HTD+LGHCTGRL+ G RG Sbjct 181 GTLDQSDQLLGRVDVVVASVHSKLRSDSGSMTRRMLRAIADPHTDILGHCTGRLVTGGRG 240 Query 239 IRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQ 298 RP S+FDA+ VF AC EH AVEINSRPER DPP LL A GC+FSIDTDAHAPGQ Sbjct 241 TRPPSQFDADRVFAACAEHQVAVEINSRPERLDPPMPLLRQAVAAGCLFSIDTDAHAPGQ 300 Query 299 LDFLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 LD+ YG RA A+VP DRIVNTWP D LL WT Sbjct 301 LDWQAYGCARAEAAQVPVDRIVNTWPLDRLLDWT 334 >gi|297204244|ref|ZP_06921641.1| PHP domain-containing protein [Streptomyces sviceus ATCC 29083] gi|297148618|gb|EFH29049.1| PHP domain-containing protein [Streptomyces sviceus ATCC 29083] Length=349 Score = 384 bits (985), Expect = 1e-104, Method: Compositional matrix adjust. Identities = 204/336 (61%), Positives = 249/336 (75%), Gaps = 7/336 (2%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLD-DAARQRHGQANSWQSLAGIGP 59 MDPV AL +IA+ +R+ RV A+R AA ++ GL D R+R +A S +SL GIGP Sbjct 5 MDPVEALERIAFLLERSLAPTYRVRAFRTAARVLTGLPADVVRER-AEAGSLESLKGIGP 63 Query 60 KTAKVIAQAWSGREPDLLAELRADAED---LGGGAIRAALRGDLHLHSNWSDGSAPIEEM 116 KTA+V+ +A +G P L +L +++ GG +RA LRGD HLHS+WSDG +PIEEM Sbjct 64 KTAQVVREALAGGVPGYLEKLESESSAPRARGGEELRALLRGDCHLHSDWSDGGSPIEEM 123 Query 117 MATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDIL 176 TAA LGH++ LTDHSPRLT+A GLSP+RLR+QLDV+ L E +AP R+LTGIE DIL Sbjct 124 GRTAAELGHEWAVLTDHSPRLTVARGLSPERLREQLDVVAALNETWAPFRLLTGIECDIL 183 Query 177 EDGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGN 236 +DGSLDQEPE+LDRLD+VV SVHSKL MD+ +MTRRMV AV + +VLGHCTGRL+ G Sbjct 184 DDGSLDQEPELLDRLDVVVVSVHSKLRMDARSMTRRMVAAVRDPRANVLGHCTGRLVTG- 242 Query 237 RGIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAP 296 RG RPES+FDA+ VF AC E GTAVEINSRPER DPP RLL A D G +FS+DTDAHAP Sbjct 243 RG-RPESEFDADEVFAACAESGTAVEINSRPERLDPPRRLLRRAVDAGVLFSVDTDAHAP 301 Query 297 GQLDFLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 GQLD+ G RA + VPA+RIV TW D LLAW+ Sbjct 302 GQLDWQILGCARAQECGVPAERIVTTWNLDELLAWS 337 >gi|291002976|ref|ZP_06560949.1| hypothetical protein SeryN2_00440 [Saccharopolyspora erythraea NRRL 2338] Length=329 Score = 384 bits (985), Expect = 2e-104, Method: Compositional matrix adjust. Identities = 201/332 (61%), Positives = 246/332 (75%), Gaps = 5/332 (1%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV ALR++A++ +R RV A+R AA+ + DD A++ ++ L G+G Sbjct 1 MDPVRALREVAFWLERAGEPTYRVRAFRRAAEAVASADDVAQRL--ESGRLTDLPGVGKT 58 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGG-AIRAALRGDLHLHSNWSDGSAPIEEMMAT 119 TAKV+ QA G PD L LR++AE G +RAALRGD H HS+WSDG +PIEEM T Sbjct 59 TAKVVEQAHRGDVPDYLRRLRSEAERPEEGRELRAALRGDCHTHSDWSDGGSPIEEMAET 118 Query 120 AAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDG 179 A LGH++ LTDHSPRLT+ANGLS +RLR+QL+VI E+ E+ AP RILTGIEVDIL+DG Sbjct 119 ARDLGHEWMVLTDHSPRLTVANGLSAERLRQQLEVIAEINERLAPFRILTGIEVDILDDG 178 Query 180 SLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGI 239 SLDQE +L LD+VVASVHSKL MDSAAMTRRM AV N H DVLGHCTGR +AG Sbjct 179 SLDQEEALLAELDVVVASVHSKLRMDSAAMTRRMCAAVRNPHVDVLGHCTGRRVAGT--P 236 Query 240 RPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQL 299 RP+S+FDA+ VF ACR+HGTAVEINSRP+R DPP LL A ++GCVFSID+D+HAPGQL Sbjct 237 RPQSEFDADEVFRACRDHGTAVEINSRPDRLDPPRTLLRRALELGCVFSIDSDSHAPGQL 296 Query 300 DFLGYGAQRALDAEVPADRIVNTWPADTLLAW 331 D+L G RA + EVPADR++NT AD LL+W Sbjct 297 DWLHLGCARAQECEVPADRLINTRRADELLSW 328 >gi|329936414|ref|ZP_08286179.1| DNA-dependent DNA polymerase beta chain [Streptomyces griseoaurantiacus M045] gi|329304210|gb|EGG48091.1| DNA-dependent DNA polymerase beta chain [Streptomyces griseoaurantiacus M045] Length=337 Score = 383 bits (984), Expect = 2e-104, Method: Compositional matrix adjust. Identities = 201/339 (60%), Positives = 245/339 (73%), Gaps = 11/339 (3%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGL---DDAARQRHGQANSWQSLAGI 57 MDP+ AL +IA+ +R++ RV A+R AA ++ L D A R R G S + L GI Sbjct 1 MDPLEALDRIAFLLERSQAPTYRVRAFRTAAGVLAPLSARDVAERARTG---SLERLKGI 57 Query 58 GPKTAKVIAQAWSGREPDLLAELRADAED---LGGGAIRAALRGDLHLHSNWSDGSAPIE 114 GPKTA+V+ +A G P L +L A+ GG +RA LRGD HLHS+WSDG + +E Sbjct 58 GPKTAQVVREALDGGTPGYLEKLEAEVGGPLVQGGEELRARLRGDCHLHSDWSDGGSTVE 117 Query 115 EMMATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVD 174 EM TAA LGH++ LTDHSPRLT+A GLSPDRLR+QLDV+ EL E++AP R+LTGIE D Sbjct 118 EMGRTAARLGHEWAVLTDHSPRLTVARGLSPDRLREQLDVVAELNERWAPFRLLTGIECD 177 Query 175 ILEDGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIA 234 IL+DGSLDQEP++L+RLD+VV SVHSKL M+ MTRRMV AV N H DVLGHCTGRL+A Sbjct 178 ILDDGSLDQEPDLLERLDVVVVSVHSKLRMEERPMTRRMVAAVRNPHADVLGHCTGRLVA 237 Query 235 GNRGIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAH 294 G RPES+FDA+ VF AC E GTAVEINSRPER DPP RLL A + G +FS+DTDAH Sbjct 238 GRE--RPESRFDADEVFAACAESGTAVEINSRPERLDPPRRLLRRAVEAGVLFSVDTDAH 295 Query 295 APGQLDFLGYGAQRALDAEVPADRIVNTWPADTLLAWTG 333 APGQLD+ YG RA + VPADR++ TWP + LL W G Sbjct 296 APGQLDWQAYGCARAEECGVPADRVITTWPVERLLEWAG 334 >gi|155061096|gb|ABS90486.1| putative DNA polymerase beta chain [Streptomyces albus] Length=344 Score = 380 bits (977), Expect = 1e-103, Method: Compositional matrix adjust. Identities = 201/335 (60%), Positives = 242/335 (73%), Gaps = 5/335 (1%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 M+PV AL +IA+ +R R RV A+R AA +I GL D R S + L G+GPK Sbjct 3 MEPVEALERIAFLLERGRAPTYRVRAFRTAAAVIAGLADGEAARRAGDGSLERLKGVGPK 62 Query 61 TAKVIAQAWSGREPDLLAELRADAED---LGGGAIRAALRGDLHLHSNWSDGSAPIEEMM 117 TA V+ +A +G P L L +A+ GG +R+ LRGD HLHS+WSDG +PIEEM Sbjct 63 TAGVVREALAGGVPGYLERLEGEADAPLAEGGSTLRSLLRGDCHLHSDWSDGGSPIEEMG 122 Query 118 ATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILE 177 A A+GH++ ALTDHSPRLTIA GLSP+RLR+QLDV+ L E +AP R+LTGIE DIL+ Sbjct 123 RAARAVGHEWAALTDHSPRLTIARGLSPERLREQLDVVAALNETWAPFRLLTGIECDILD 182 Query 178 DGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNR 237 DGSLDQEPE+LDRLD+VV SVHSKL MD+AAMTRRMVRAV + DVLGHCTGRL+ G R Sbjct 183 DGSLDQEPELLDRLDVVVVSVHSKLRMDAAAMTRRMVRAVRDPRADVLGHCTGRLVTG-R 241 Query 238 GIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPG 297 G RPES+FDA+ VF AC E TAVEINSRPER DPP LL A G +FS+DTDAHAPG Sbjct 242 G-RPESQFDADEVFAACAEADTAVEINSRPERLDPPRGLLKRAVAAGTLFSVDTDAHAPG 300 Query 298 QLDFLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 QLD+ G RA + VPA+R+V TW AD ++AWT Sbjct 301 QLDWQVIGCARAEECGVPAERVVTTWTADEVVAWT 335 >gi|289773540|ref|ZP_06532918.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|289703739|gb|EFD71168.1| conserved hypothetical protein [Streptomyces lividans TK24] Length=358 Score = 380 bits (975), Expect = 2e-103, Method: Compositional matrix adjust. Identities = 203/335 (61%), Positives = 247/335 (74%), Gaps = 7/335 (2%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV AL +IA+ +R++ RV A+R AA ++ GL + + +A S +SL G+GPK Sbjct 16 MDPVEALERIAFLLERSQAPTYRVRAFRTAAGVLGGL--SLTELRERAGSLESLKGVGPK 73 Query 61 TAKVIAQAWSGREPDLLAELRADAED---LGGGAIRAALRGDLHLHSNWSDGSAPIEEMM 117 TA+V +A G+ P LA+L +A+ GG +R LRGD HLHS+WSDG +PIEEM Sbjct 74 TAQVAREALDGQVPGYLAKLEDEADSPLARGGERLRERLRGDCHLHSDWSDGGSPIEEMG 133 Query 118 ATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILE 177 TAAALGH++ ALTDHSPRLT+A GLSP RLR+QLDV+ EL +AP R+LTGIE DIL+ Sbjct 134 RTAAALGHEWAALTDHSPRLTVARGLSPARLREQLDVVAELNATWAPFRLLTGIECDILD 193 Query 178 DGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNR 237 DGSLDQEPE+L+RLD+VV SVHSKL MD+ +MTRRMV AV + H DVLGHCTGRL+ G R Sbjct 194 DGSLDQEPELLERLDVVVVSVHSKLRMDARSMTRRMVAAVRDPHADVLGHCTGRLLTG-R 252 Query 238 GIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPG 297 G RPES FDA+ VF AC E GTAVEINSRPER DPP RLL A G +FSIDTDAHAPG Sbjct 253 G-RPESAFDADEVFAACAEAGTAVEINSRPERLDPPRRLLRRAVAAGVLFSIDTDAHAPG 311 Query 298 QLDFLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 QLD+ +G RA + VP +R+V TW D LLAWT Sbjct 312 QLDWQIHGCARAEECGVPPERVVTTWSLDELLAWT 346 >gi|21219312|ref|NP_625091.1| hypothetical protein SCO0789 [Streptomyces coelicolor A3(2)] gi|11071281|emb|CAC14354.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length=372 Score = 379 bits (974), Expect = 3e-103, Method: Compositional matrix adjust. Identities = 203/335 (61%), Positives = 247/335 (74%), Gaps = 7/335 (2%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV AL +IA+ +R++ RV A+R AA ++ GL + + +A S +SL G+GPK Sbjct 30 MDPVEALERIAFLLERSQAPTYRVRAFRTAAGVLGGL--SLTELRERAGSLESLKGVGPK 87 Query 61 TAKVIAQAWSGREPDLLAELRADAED---LGGGAIRAALRGDLHLHSNWSDGSAPIEEMM 117 TA+V +A G+ P LA+L +A+ GG +R LRGD HLHS+WSDG +PIEEM Sbjct 88 TAQVAREALDGQVPGYLAKLEDEADSPLARGGERLRERLRGDCHLHSDWSDGGSPIEEMG 147 Query 118 ATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILE 177 TAAALGH++ ALTDHSPRLT+A GLSP RLR+QLDV+ EL +AP R+LTGIE DIL+ Sbjct 148 RTAAALGHEWAALTDHSPRLTVARGLSPARLREQLDVVAELNATWAPFRLLTGIECDILD 207 Query 178 DGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNR 237 DGSLDQEPE+L+RLD+VV SVHSKL MD+ +MTRRMV AV + H DVLGHCTGRL+ G R Sbjct 208 DGSLDQEPELLERLDVVVVSVHSKLRMDARSMTRRMVAAVRDPHADVLGHCTGRLLTG-R 266 Query 238 GIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPG 297 G RPES FDA+ VF AC E GTAVEINSRPER DPP RLL A G +FSIDTDAHAPG Sbjct 267 G-RPESAFDADEVFAACAEAGTAVEINSRPERLDPPRRLLRRAVAAGVLFSIDTDAHAPG 325 Query 298 QLDFLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 QLD+ +G RA + VP +R+V TW D LLAWT Sbjct 326 QLDWQIHGCARAEECGVPPERVVTTWSLDELLAWT 360 >gi|302555975|ref|ZP_07308317.1| PHP domain-containing protein [Streptomyces viridochromogenes DSM 40736] gi|302473593|gb|EFL36686.1| PHP domain-containing protein [Streptomyces viridochromogenes DSM 40736] Length=347 Score = 379 bits (974), Expect = 3e-103, Method: Compositional matrix adjust. Identities = 201/338 (60%), Positives = 249/338 (74%), Gaps = 9/338 (2%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGL-DDAARQRHGQANSWQSLAGIGP 59 MDPV AL +IA+ +R+ RV A+R A+ ++ L +D RQR +A S +SL G+GP Sbjct 1 MDPVEALDRIAFLLERSLAPTYRVRAFRTASRVLRELGEDEVRQR-AEAGSLESLKGVGP 59 Query 60 KTAKVIAQAWSGREPDLLAELRADAEDL-----GGGAIRAALRGDLHLHSNWSDGSAPIE 114 KTA+V+ +A +G P L +L +AE+ GG +R LRGD HLHS+WSDG +PIE Sbjct 60 KTAQVVREALAGEVPGYLRKLEGEAEERQAVVRGGERLRELLRGDCHLHSDWSDGGSPIE 119 Query 115 EMMATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVD 174 EM AA LGH++ ALTDHSPRLT+A GLS +RLR+QLDV+ EL +AP R+LTGIE D Sbjct 120 EMGRAAAELGHEWAALTDHSPRLTVARGLSAERLREQLDVVAELNATWAPFRLLTGIECD 179 Query 175 ILEDGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIA 234 ILEDGSLDQEPE+L+RLD+VV SVHSKL MD+ +MTRRMV AV + H+DVLGHCTGRL+ Sbjct 180 ILEDGSLDQEPELLERLDVVVVSVHSKLRMDARSMTRRMVAAVRDPHSDVLGHCTGRLLT 239 Query 235 GNRGIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAH 294 G RG RPES+FDA+ VF AC E GTA+EINSRPER DPP RLL A D G +FS+DTDAH Sbjct 240 G-RG-RPESEFDADEVFAACAETGTALEINSRPERLDPPRRLLRRAVDAGVLFSVDTDAH 297 Query 295 APGQLDFLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 APGQLD+ G RA + VP +R+V TW + LLAWT Sbjct 298 APGQLDWQINGCARAEECGVPPERVVTTWAREELLAWT 335 >gi|116668963|ref|YP_829896.1| hypothetical protein Arth_0395 [Arthrobacter sp. FB24] gi|116609072|gb|ABK01796.1| PHP C-terminal domain protein [Arthrobacter sp. FB24] Length=339 Score = 376 bits (965), Expect = 3e-102, Method: Compositional matrix adjust. Identities = 200/339 (59%), Positives = 239/339 (71%), Gaps = 9/339 (2%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDD---AARQRHGQANSWQSLAGI 57 MD V AL +IA++ +R +V A+R AA II LD AAR R+G+ +S+ GI Sbjct 1 MDAVDALNEIAFWLERELAPTFKVQAFRKAAGIIGALDPGEVAARARNGR---LKSMKGI 57 Query 58 GPKTAKVIAQAWSGREPDLLAELRADAED---LGGGAIRAALRGDLHLHSNWSDGSAPIE 114 G +T +VI QA G PD L LR + GG + AALRGDLH HS+WSDG +PIE Sbjct 58 GDRTFEVIRQAVDGGVPDYLEGLRQRGQQPLAEGGTELHAALRGDLHSHSDWSDGGSPIE 117 Query 115 EMMATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVD 174 M A LG +Y ALTDHSP L IANGLS DRLR+QLDV+ ++ R+L GIEVD Sbjct 118 LMADAARTLGREYLALTDHSPSLKIANGLSADRLREQLDVVADVNADGGGFRLLAGIEVD 177 Query 175 ILEDGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIA 234 ILEDG+LDQ P+MLDRLD+VVASVHSKL D MT RM+ A+ + H +VLGHCTGRL+ Sbjct 178 ILEDGTLDQSPDMLDRLDVVVASVHSKLRSDRRTMTARMMGAINDPHMNVLGHCTGRLLQ 237 Query 235 GNRGIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAH 294 G+RG RP+S+FDAE VF AC E G AVEINSRPER+DPP L+ LA D GC+FSID+DAH Sbjct 238 GSRGTRPQSEFDAERVFAACAEQGVAVEINSRPERQDPPDELIRLALDAGCLFSIDSDAH 297 Query 295 APGQLDFLGYGAQRALDAEVPADRIVNTWPADTLLAWTG 333 APGQLDFL YGA RA VPA+RIVNTWP D LL W+G Sbjct 298 APGQLDFLQYGAARAASNGVPAERIVNTWPLDRLLEWSG 336 >gi|1518394|emb|CAA94729.1| ORF1 [Streptomyces lividans] Length=343 Score = 376 bits (965), Expect = 3e-102, Method: Compositional matrix adjust. Identities = 200/335 (60%), Positives = 247/335 (74%), Gaps = 7/335 (2%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV AL +IA+ +R++ RV ++R AA ++ GL + + +A S +SL G+GPK Sbjct 1 MDPVEALERIAFLLERSQAPTYRVRSFRTAAGVLGGL--SLTELRERAGSLESLKGVGPK 58 Query 61 TAKVIAQAWSGREPDLLAELRADAED---LGGGAIRAALRGDLHLHSNWSDGSAPIEEMM 117 TA+V +A G+ P LA+L +A+ GG +R LRGD HLH++WSDG +P+EEM Sbjct 59 TAQVAREALDGQVPGYLAKLEDEADSPLARGGERLRERLRGDCHLHADWSDGGSPMEEMG 118 Query 118 ATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILE 177 TAAALGH++ ALTDHSPRLT+A GLSP RLR+QLDV+ EL +AP R+LTGIE DIL+ Sbjct 119 RTAAALGHEWAALTDHSPRLTVARGLSPARLREQLDVVAELNATWAPFRLLTGIECDILD 178 Query 178 DGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNR 237 DGSLDQEPE+L+RLD+VV SVHSKL MD+ +MTRRMV AV + H DVLGHCTGRL+ G R Sbjct 179 DGSLDQEPELLERLDVVVVSVHSKLRMDARSMTRRMVAAVRDPHADVLGHCTGRLLTG-R 237 Query 238 GIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPG 297 G RPES FDA+ VF AC E GTAVEINSRPER DPP RLL A G +FSIDTDAHAPG Sbjct 238 G-RPESAFDADEVFAACAEAGTAVEINSRPERLDPPRRLLRRAVAAGVLFSIDTDAHAPG 296 Query 298 QLDFLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 QLD+ +G RA + VP +R+V TW D LLAWT Sbjct 297 QLDWQIHGCARAEECGVPPERVVTTWSLDELLAWT 331 >gi|328880371|emb|CCA53610.1| DNA-dependent DNA polymerase beta chain [Streptomyces venezuelae ATCC 10712] Length=341 Score = 374 bits (960), Expect = 1e-101, Method: Compositional matrix adjust. Identities = 204/342 (60%), Positives = 248/342 (73%), Gaps = 9/342 (2%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV AL +IA+ +R + R A+R AA + L + R A + +++ G+GPK Sbjct 1 MDPVAALNRIAFLLERAQAPGYRARAFRTAAAAVGALPEGEAARRAAAGTLEAVKGLGPK 60 Query 61 TAKVIAQAWSGREPDLLAELRADAEDL--------GGGAIRAALRGDLHLHSNWSDGSAP 112 TA V+ +A GR P+ LA L A+ E+ GG A+RAALRGD HLHS+WSDG A Sbjct 61 TAAVVREALDGRVPEYLAGLEAELEESLRTDGTTGGGEALRAALRGDCHLHSDWSDGGAT 120 Query 113 IEEMMATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIE 172 IE+M AA LGH++ LTDHSPRLT+A GLSP+RLR+QLDV+ L E++AP R+LTGIE Sbjct 121 IEDMGRAAAGLGHEWAVLTDHSPRLTVARGLSPERLREQLDVVARLNEEWAPFRLLTGIE 180 Query 173 VDILEDGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRL 232 DILEDGSLDQEPE+LDRLD+VV SVHSKL MD+ AMTRR+ RAV N DVLGHCTGRL Sbjct 181 CDILEDGSLDQEPELLDRLDLVVGSVHSKLRMDARAMTRRLERAVRNPLMDVLGHCTGRL 240 Query 233 IAGNRGIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTD 292 +AG R +RPES+FDAE VF AC E GTAVEINSRPER DPP RLL LA G F++DTD Sbjct 241 VAGGR-LRPESEFDAERVFAACAESGTAVEINSRPERLDPPRRLLRLAVAAGTYFAVDTD 299 Query 293 AHAPGQLDFLGYGAQRALDAEVPADRIVNTWPADTLLAWTGS 334 AHAPGQL++ G RA + VP +R+VNTWPAD LL WTG+ Sbjct 300 AHAPGQLEWQIIGCARAEECGVPEERVVNTWPADRLLEWTGA 341 >gi|325961947|ref|YP_004239853.1| PHP family phosphohydrolase, histidinol phosphatase [Arthrobacter phenanthrenivorans Sphe3] gi|323468034|gb|ADX71719.1| PHP family phosphohydrolase, histidinol phosphatase [Arthrobacter phenanthrenivorans Sphe3] Length=347 Score = 374 bits (960), Expect = 1e-101, Method: Compositional matrix adjust. Identities = 194/347 (56%), Positives = 238/347 (69%), Gaps = 12/347 (3%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MD V AL +IA++ +R R +V A+R AA I L + +S+ GIG + Sbjct 1 MDAVAALNEIAFWLERGRAATFKVQAFRKAAAAISPLPPEEVAERARTGRLKSMKGIGDR 60 Query 61 TAKVIAQAWSGREPDLLAELRADAED---LGGGAIRAALRGDLHLHSNWSDGSAPIEEMM 117 T +VI +A G+ P+ LA+LR GGGA+R ALRGDLH HS+WSDG +PIE M Sbjct 61 TYQVIREAVEGQVPEYLADLREKGSQPLASGGGALREALRGDLHSHSDWSDGGSPIELMA 120 Query 118 ATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELR---------EKFAPLRIL 168 A A LG +Y ALTDHSP LTIANGLS +RL +QLDV+ + + P R+L Sbjct 121 AAAGVLGREYLALTDHSPNLTIANGLSAERLLQQLDVVAAINDGSRPGPDSQAGNPARLL 180 Query 169 TGIEVDILEDGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHC 228 TGIEVDILE G LDQ+PE+LDRLDIVVASVHSKL D MTRRM+ + + HT+VLGHC Sbjct 181 TGIEVDILESGELDQDPELLDRLDIVVASVHSKLRADRKTMTRRMLGGIQDPHTNVLGHC 240 Query 229 TGRLIAGNRGIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFS 288 TGRL+ G+RG RP S+FDA+ VF AC EH AVEINSRPER+DPP L+ LA + GC+FS Sbjct 241 TGRLVEGSRGTRPPSEFDAKEVFAACAEHNVAVEINSRPERQDPPDALMQLALEAGCLFS 300 Query 289 IDTDAHAPGQLDFLGYGAQRALDAEVPADRIVNTWPADTLLAWTGSH 335 ID+DAHAPGQLDFL YGA+RA VPA+RI+ TWP D LLAW + Sbjct 301 IDSDAHAPGQLDFLQYGAERAERNGVPAERIITTWPVDRLLAWAAGN 347 >gi|284989047|ref|YP_003407601.1| PHP domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284062292|gb|ADB73230.1| PHP domain protein [Geodermatophilus obscurus DSM 43160] Length=357 Score = 374 bits (959), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 199/344 (58%), Positives = 238/344 (70%), Gaps = 12/344 (3%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 + P ALR+IA+ +R R RV A+R AA +++ L R + + L GIGPK Sbjct 5 LPPAAALRRIAFLLERAREPTHRVSAFRTAAAVVDTLGPEELDRRIRTRTLTDLRGIGPK 64 Query 61 TAKVIAQAWSGREPDLLAELRADAEDLGGGA-----IRAALRGDLHLHSNWSDGSAPIEE 115 T I QA +G P+ LA L +L A RA LRGDLH+HS+WSDG +PI E Sbjct 65 TGAAIVQAHAGEVPEYLARLEESYGELVPLADDVADFRALLRGDLHVHSDWSDGGSPIRE 124 Query 116 MMATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDI 175 M A LGH+Y ALTDHSPRLT+ANGLS +RL +QLDV+ L E+ AP RILTGIE DI Sbjct 125 MAEAAIGLGHEYMALTDHSPRLTVANGLSAERLERQLDVVAALNEELAPFRILTGIECDI 184 Query 176 LEDGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAG 235 DGSLDQ E+L RLD+VVASVHS L DSAAMT RM+ AVA+ HTDVLGHCTGRL+ Sbjct 185 NVDGSLDQTDELLGRLDVVVASVHSDLRADSAAMTERMLTAVADPHTDVLGHCTGRLLVS 244 Query 236 NRGI-------RPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFS 288 RPES FDAEAVF+AC EHGTAVEINSRPER DPP RLL+LA D+GC F+ Sbjct 245 REQREGRRQRPRPESTFDAEAVFSACIEHGTAVEINSRPERLDPPLRLLNLAVDLGCEFA 304 Query 289 IDTDAHAPGQLDFLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 +DTDAHAPGQLD+ G G +RA++ VPA+R+VNT A+ LLAWT Sbjct 305 VDTDAHAPGQLDWQGNGCERAVECGVPAERVVNTRSAEDLLAWT 348 >gi|134100034|ref|YP_001105695.1| hypothetical protein SACE_3496 [Saccharopolyspora erythraea NRRL 2338] gi|133912657|emb|CAM02770.1| putative histidinol phosphatase [Saccharopolyspora erythraea NRRL 2338] Length=323 Score = 373 bits (958), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 195/326 (60%), Positives = 241/326 (74%), Gaps = 5/326 (1%) Query 7 LRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPKTAKVIA 66 +R++A++ +R RV A+R AA+ + DD A++ ++ L G+G TAKV+ Sbjct 1 MREVAFWLERAGEPTYRVRAFRRAAEAVASADDVAQRL--ESGRLTDLPGVGKTTAKVVE 58 Query 67 QAWSGREPDLLAELRADAEDLGGG-AIRAALRGDLHLHSNWSDGSAPIEEMMATAAALGH 125 QA G PD L LR++AE G +RAALRGD H HS+WSDG +PIEEM TA LGH Sbjct 59 QAHRGDVPDYLRRLRSEAERPEEGRELRAALRGDCHTHSDWSDGGSPIEEMAETARDLGH 118 Query 126 QYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILEDGSLDQEP 185 ++ LTDHSPRLT+ANGLS +RLR+QL+VI E+ E+ AP RILTGIEVDIL+DGSLDQE Sbjct 119 EWMVLTDHSPRLTVANGLSAERLRQQLEVIAEINERLAPFRILTGIEVDILDDGSLDQEE 178 Query 186 EMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNRGIRPESKF 245 +L LD+VVASVHSKL MDSAAMTRRM AV N H DVLGHCTGR +AG RP+S+F Sbjct 179 ALLAELDVVVASVHSKLRMDSAAMTRRMCAAVRNPHVDVLGHCTGRRVAGT--PRPQSEF 236 Query 246 DAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPGQLDFLGYG 305 DA+ VF ACR+HGTAVEINSRP+R DPP LL A ++GCVFSID+D+HAPGQLD+L G Sbjct 237 DADEVFRACRDHGTAVEINSRPDRLDPPRTLLRRALELGCVFSIDSDSHAPGQLDWLHLG 296 Query 306 AQRALDAEVPADRIVNTWPADTLLAW 331 RA + EVPADR++NT AD LL+W Sbjct 297 CARAQECEVPADRLINTRRADELLSW 322 >gi|345003870|ref|YP_004806724.1| PHP domain-containing protein [Streptomyces sp. SirexAA-E] gi|344319496|gb|AEN14184.1| PHP domain protein [Streptomyces sp. SirexAA-E] Length=339 Score = 373 bits (958), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 199/338 (59%), Positives = 245/338 (73%), Gaps = 11/338 (3%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDD---AARQRHGQANSWQSLAGI 57 MD VTALR+IA+ +R + RV A+R AA +E + D A R HG S +++ GI Sbjct 1 MDSVTALRRIAFLLERAQAATYRVKAFRTAAAAVEEMGDGELADRVAHG---SLEAVRGI 57 Query 58 GPKTAKVIAQAWSGREPDLLAELRADAED---LGGGAIRAALRGDLHLHSNWSDGSAPIE 114 GP+TA+VI +A SG P L L +A GG ++ AALRGD H HS+WSDG +PIE Sbjct 58 GPRTAEVIREAASGATPRYLERLEREASTPLAQGGESLLAALRGDCHTHSDWSDGGSPIE 117 Query 115 EMMATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVD 174 EM AA LGH + LTDHSPRLT+ANGLSP+RLR+QLDV+ EL E++AP R+LTGIE D Sbjct 118 EMGRAAAELGHAWTVLTDHSPRLTVANGLSPERLRRQLDVVAELNERWAPFRLLTGIECD 177 Query 175 ILEDGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIA 234 I DGSLDQEPE+L+RLD+VV SVHSKL MD A MT+R++ AV + H D+LGHCTGRL++ Sbjct 178 INLDGSLDQEPELLERLDVVVVSVHSKLRMDRAQMTKRLLAAVRDPHADILGHCTGRLVS 237 Query 235 GNRGIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAH 294 G RG RPES+FDA+ VF AC GTAVEIN RPER DPP L+ A G +FSIDTDAH Sbjct 238 G-RG-RPESQFDADEVFAACARSGTAVEINCRPERLDPPRTLIRQALSAGALFSIDTDAH 295 Query 295 APGQLDFLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 APGQLD+ YG RA + +VPA+R++ TW AD LLAWT Sbjct 296 APGQLDWQVYGCARAEECDVPAERVITTWTADRLLAWT 333 >gi|334337194|ref|YP_004542346.1| PHP domain protein [Isoptericola variabilis 225] gi|334107562|gb|AEG44452.1| PHP domain protein [Isoptericola variabilis 225] Length=332 Score = 373 bits (958), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 198/339 (59%), Positives = 237/339 (70%), Gaps = 17/339 (5%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLD-----DAARQRHGQANSWQSLA 55 MDP+ AL +IA+ +R R + A+R AAD++ GL D AR R + Sbjct 1 MDPLEALTEIAFLLERERSSRFKSKAFRTAADVVAGLSEDHLRDPARLRRTK-------- 52 Query 56 GIGPKTAKVIAQAWSGREPDLLAELRADAEDLGGG--AIRAALRGDLHLHSNWSDGSAPI 113 GIGP T V+ QA GR PD LAELR AE G G A+R LRGDLH HS+WSDG+ PI Sbjct 53 GIGPSTFAVVTQALEGRVPDYLAELRRRAESAGTGTSALRGLLRGDLHCHSDWSDGTTPI 112 Query 114 EEMMATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEV 173 M+A A LGH+Y ALTDHSPRLT+A GLS +RL +QLDV+ + R+LTGIEV Sbjct 113 ATMLAAAEHLGHEYVALTDHSPRLTVARGLSAERLVEQLDVVATFAGR--DTRLLTGIEV 170 Query 174 DILEDGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLI 233 DILEDG LDQ E+LDRLD+VVASVHS L D+ MTRRM+ AVAN H DVLGH TGRL+ Sbjct 171 DILEDGGLDQTDELLDRLDVVVASVHSDLRADAGRMTRRMLAAVANPHVDVLGHVTGRLV 230 Query 234 AGNRGIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDA 293 G+RG+RP S+ DAE VF AC EHG AVEINSRPER+DPP L+ +A D GC+F+ID+DA Sbjct 231 EGSRGLRPPSQLDAERVFAACAEHGVAVEINSRPERQDPPDDLVRVALDAGCLFAIDSDA 290 Query 294 HAPGQLDFLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 HAPGQL F+ +GA+RA VPA+RIV TWP D LL WT Sbjct 291 HAPGQLGFIDHGAERAERLGVPAERIVTTWPVDRLLEWT 329 >gi|290955489|ref|YP_003486671.1| hypothetical protein SCAB_9211 [Streptomyces scabiei 87.22] gi|260645015|emb|CBG68101.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length=349 Score = 372 bits (955), Expect = 5e-101, Method: Compositional matrix adjust. Identities = 196/336 (59%), Positives = 241/336 (72%), Gaps = 7/336 (2%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDPV AL +IA+ +R+R RV A+R AA ++ L A S ++L G+GP+ Sbjct 1 MDPVEALDRIAFLLERDRAPTYRVRAFRTAAAVLGALSARELAERAAAGSLEALKGVGPR 60 Query 61 TAKVIAQAWSGREPDLLAELRADAE-----DLGGGAIRAALRGDLHLHSNWSDGSAPIEE 115 TA+V +A +G P L +L AE G +RA +RGD H+HS+WSDG +PIEE Sbjct 61 TAQVAREALAGEVPGYLRKLEQGAEAPLTEGGAGTGLRALIRGDCHVHSDWSDGGSPIEE 120 Query 116 MMATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDI 175 M TAA LGH++ LTDHSPRLT+A GLSP+RLR+QLDV+ L E +AP R+LTGIE DI Sbjct 121 MGRTAARLGHEWAVLTDHSPRLTVARGLSPERLREQLDVVAALNETWAPFRLLTGIECDI 180 Query 176 LEDGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAG 235 L+DGSLDQEPE+L+RLD+VV SVHSKL MD+ AMTRRMV AV + H+DVLGHCTGRL+ G Sbjct 181 LDDGSLDQEPELLERLDVVVVSVHSKLRMDARAMTRRMVAAVRDPHSDVLGHCTGRLVTG 240 Query 236 NRGIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHA 295 RG RPES+FDAEAVF AC E GTAVEINSRPER DPP RL+ A G +FSIDTDAHA Sbjct 241 -RG-RPESEFDAEAVFAACAETGTAVEINSRPERLDPPRRLVRAAVAAGALFSIDTDAHA 298 Query 296 PGQLDFLGYGAQRALDAEVPADRIVNTWPADTLLAW 331 PGQL + +G RA + VPA+R+V TW + LL W Sbjct 299 PGQLTWQVHGCARAEECGVPAERVVTTWGVEELLGW 334 >gi|119962368|ref|YP_947284.1| hypothetical protein AAur_1516 [Arthrobacter aurescens TC1] gi|119949227|gb|ABM08138.1| putative DNA polymerase beta chain [Arthrobacter aurescens TC1] Length=339 Score = 372 bits (954), Expect = 6e-101, Method: Compositional matrix adjust. Identities = 187/334 (56%), Positives = 234/334 (71%), Gaps = 3/334 (0%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAARQRHGQANSWQSLAGIGPK 60 MDP+ AL +I+++ +R++ +V A+R AAD + L + + SL G+G + Sbjct 1 MDPIEALDEISFWLERSQAPTFKVQAFRKAADAVRQLQPEELAKLVNSGRITSLKGVGSR 60 Query 61 TAKVIAQAWSGREPDLLAELRA---DAEDLGGGAIRAALRGDLHLHSNWSDGSAPIEEMM 117 +A+VI QA PD LA+LR +A GG +RAALRGDLH HSNWSDG +PIE M+ Sbjct 61 SAEVITQAMENSVPDYLADLRTRGTEALASGGDTMRAALRGDLHSHSNWSDGGSPIEAMV 120 Query 118 ATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDILE 177 A A LG +Y ALTDHSP LTIANGLS +RL KQL V++ + R+L GIEVDILE Sbjct 121 AAARTLGREYLALTDHSPNLTIANGLSVERLEKQLGVVEGINSSQDGFRLLKGIEVDILE 180 Query 178 DGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGNR 237 DG+LDQ +MLD+LD+VVASVHSKL D MT RM+ +++ HT+VLGHCTGRL+ G+R Sbjct 181 DGTLDQTADMLDKLDVVVASVHSKLRSDKKTMTARMLGGISDPHTNVLGHCTGRLVQGSR 240 Query 238 GIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAPG 297 G RPES+FDA VF C E G AVEINSRPER+DPP L+ LA D GC+FSID+DAHAPG Sbjct 241 GTRPESEFDAAKVFKECAEWGVAVEINSRPERQDPPDDLIKLALDAGCLFSIDSDAHAPG 300 Query 298 QLDFLGYGAQRALDAEVPADRIVNTWPADTLLAW 331 QLDFL YGA+RA VP +RIV TWP + L W Sbjct 301 QLDFLQYGAERAETLGVPKERIVTTWPLEQLKEW 334 >gi|117165003|emb|CAJ88555.1| putative phosphoesterase [Streptomyces ambofaciens ATCC 23877] Length=343 Score = 370 bits (950), Expect = 2e-100, Method: Compositional matrix adjust. Identities = 197/336 (59%), Positives = 246/336 (74%), Gaps = 9/336 (2%) Query 1 MDPVTALRQIAYYKDRNRHDPRRVMAYRNAADIIEGLDDAA-RQRHGQANSWQSLAGIGP 59 M+PV AL +IA+ +R++ RV A+R AA ++ L A R+R G S +SL G+GP Sbjct 1 MEPVEALERIAFLLERSQAPTYRVRAFRTAARVLGELPAAELRERAG---SLESLKGVGP 57 Query 60 KTAKVIAQAWSGREPDLLAELRADAEDL---GGGAIRAALRGDLHLHSNWSDGSAPIEEM 116 KTA+V +A +G P L +L +A+ GG +R LRGD HLHS+WSDG +PIEEM Sbjct 58 KTAQVAREALAGEVPGYLEKLEGEADTPLAEGGEQLRERLRGDCHLHSDWSDGGSPIEEM 117 Query 117 MATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDELREKFAPLRILTGIEVDIL 176 AAALGH++ LTDHSPRLT+A GLSP+RLR+QLDV+ L E +AP R+LTGIE DIL Sbjct 118 GRAAAALGHEWAVLTDHSPRLTVARGLSPERLREQLDVVAALNETWAPFRLLTGIECDIL 177 Query 177 EDGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMVRAVANGHTDVLGHCTGRLIAGN 236 +DGSLDQEP++L+RLD+VV SVHSKL MD+ AMTRRMV AV + H D+LGHCTGRL+ G Sbjct 178 DDGSLDQEPDLLERLDVVVVSVHSKLRMDARAMTRRMVAAVRDPHADILGHCTGRLLTG- 236 Query 237 RGIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTRLLHLARDIGCVFSIDTDAHAP 296 RG RPES+FDA+ VF AC E GTAVEINSRPER DPP RLL A G +F++DTDAHAP Sbjct 237 RG-RPESEFDADEVFAACAESGTAVEINSRPERLDPPRRLLRRAVAAGVLFAVDTDAHAP 295 Query 297 GQLDFLGYGAQRALDAEVPADRIVNTWPADTLLAWT 332 GQLD+ +G RA + VP +R+V TW + LLAWT Sbjct 296 GQLDWQIHGCARAQECGVPPERVVTTWSREELLAWT 331 Lambda K H 0.319 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 602106349260 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40