BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3857c Length=65 Score E Sequences producing significant alignments: (Bits) Value gi|15610993|ref|NP_218374.1| hypothetical protein Rv3857c [Mycob... 130 5e-29 gi|340628829|ref|YP_004747281.1| hypothetical protein MCAN_38791... 127 6e-28 gi|323717441|gb|EGB26645.1| membrane protein [Mycobacterium tube... 101 3e-20 gi|296166990|ref|ZP_06849404.1| conserved hypothetical protein [... 61.2 5e-08 gi|240168334|ref|ZP_04746993.1| hypothetical protein MkanA1_0341... 60.8 7e-08 gi|183985377|ref|YP_001853668.1| hypothetical protein MMAR_5408 ... 59.7 1e-07 gi|254822703|ref|ZP_05227704.1| hypothetical protein MintA_22429... 58.2 4e-07 gi|169631761|ref|YP_001705410.1| hypothetical protein MAB_4688 [... 57.8 6e-07 gi|118464986|ref|YP_879464.1| hypothetical protein MAV_0170 [Myc... 57.4 7e-07 gi|41406274|ref|NP_959110.1| hypothetical protein MAP0176 [Mycob... 57.4 7e-07 gi|254773227|ref|ZP_05214743.1| hypothetical protein MaviaA2_008... 57.4 7e-07 gi|342860111|ref|ZP_08716763.1| hypothetical protein MCOL_14570 ... 56.2 1e-06 gi|312141264|ref|YP_004008600.1| integral membrane protein [Rhod... 55.1 3e-06 gi|145220993|ref|YP_001131671.1| hypothetical protein Mflv_0389 ... 52.4 2e-05 gi|319950150|ref|ZP_08024086.1| integral membrane protein [Dietz... 52.0 3e-05 gi|333992813|ref|YP_004525427.1| hypothetical protein JDM601_417... 48.5 3e-04 gi|226307934|ref|YP_002767894.1| hypothetical protein RER_44470 ... 48.5 3e-04 gi|296395170|ref|YP_003660054.1| hypothetical protein Srot_2791 ... 47.8 6e-04 gi|118471210|ref|YP_890656.1| integral membrane protein [Mycobac... 47.8 6e-04 gi|120401321|ref|YP_951150.1| hypothetical protein Mvan_0295 [My... 47.8 6e-04 gi|326383329|ref|ZP_08205017.1| hypothetical protein SCNU_10344 ... 43.5 0.011 gi|158520879|ref|YP_001528749.1| hypothetical protein Dole_0862 ... 41.6 0.035 gi|262199893|ref|YP_003271102.1| hypothetical protein Hoch_6745 ... 41.2 0.056 gi|317509146|ref|ZP_07966771.1| hypothetical protein HMPREF9336_... 38.5 0.31 gi|343925054|ref|ZP_08764586.1| hypothetical protein GOALK_033_0... 38.5 0.38 gi|333918196|ref|YP_004491777.1| hypothetical protein AS9A_0522 ... 38.1 0.38 gi|311697155|gb|ADQ00027.1| conserved hypothetical protein, memb... 38.1 0.43 gi|262279333|ref|ZP_06057118.1| conserved hypothetical protein [... 37.0 1.0 gi|262378374|ref|ZP_06071531.1| conserved hypothetical protein [... 35.8 2.1 gi|304309695|ref|YP_003809293.1| hypothetical protein HDN1F_0043... 35.8 2.2 gi|255320480|ref|ZP_05361661.1| conserved hypothetical protein [... 35.8 2.2 >gi|15610993|ref|NP_218374.1| hypothetical protein Rv3857c [Mycobacterium tuberculosis H37Rv] gi|15843488|ref|NP_338525.1| hypothetical protein MT3972 [Mycobacterium tuberculosis CDC1551] gi|31795031|ref|NP_857524.1| hypothetical protein Mb3887c [Mycobacterium bovis AF2122/97] 55 more sequence titles Length=65 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 65/65 (100%), Positives = 65/65 (100%), Gaps = 0/65 (0%) Query 1 MNCALGFDTKPILLASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVV 60 MNCALGFDTKPILLASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVV Sbjct 1 MNCALGFDTKPILLASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVV 60 Query 61 FGQLV 65 FGQLV Sbjct 61 FGQLV 65 >gi|340628829|ref|YP_004747281.1| hypothetical protein MCAN_38791 [Mycobacterium canettii CIPT 140010059] gi|340007019|emb|CCC46210.1| putative membrane protein [Mycobacterium canettii CIPT 140010059] Length=65 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 64/65 (99%), Positives = 64/65 (99%), Gaps = 0/65 (0%) Query 1 MNCALGFDTKPILLASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVV 60 MNCALGFDTKPILLAS VTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVV Sbjct 1 MNCALGFDTKPILLASDVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVV 60 Query 61 FGQLV 65 FGQLV Sbjct 61 FGQLV 65 >gi|323717441|gb|EGB26645.1| membrane protein [Mycobacterium tuberculosis CDC1551A] Length=52 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 51/52 (99%), Positives = 52/52 (100%), Gaps = 0/52 (0%) Query 14 LASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQLV 65 +ASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQLV Sbjct 1 MASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQLV 52 >gi|296166990|ref|ZP_06849404.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897670|gb|EFG77262.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=142 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/49 (56%), Positives = 34/49 (70%), Gaps = 0/49 (0%) Query 16 SYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQL 64 +Y+ HGARR T NQFE P +G V M LLI+GE+ GF V++ G V GQ Sbjct 94 TYIAHGARRDTVNQFEHPVRGTAVAMTLLIVGEIGGFGVLLAGFVAGQF 142 >gi|240168334|ref|ZP_04746993.1| hypothetical protein MkanA1_03417 [Mycobacterium kansasii ATCC 12478] Length=143 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 29/50 (58%), Positives = 35/50 (70%), Gaps = 0/50 (0%) Query 14 LASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQ 63 + SY+ HGARR T NQF+ PA G + M LLILGE+ GFAVV G + GQ Sbjct 92 IGSYIWHGARRDTENQFDPPAPGTRLGMTLLILGEIGGFAVVFAGFIAGQ 141 >gi|183985377|ref|YP_001853668.1| hypothetical protein MMAR_5408 [Mycobacterium marinum M] gi|183178703|gb|ACC43813.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=143 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/51 (55%), Positives = 35/51 (69%), Gaps = 0/51 (0%) Query 14 LASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQL 64 +A+Y+ HGARR T NQF+ G GV M L+LGE+ GFAVV G + GQL Sbjct 92 IATYIFHGARRDTENQFDPAVPGTGVFMVSLMLGEIGGFAVVFVGFIVGQL 142 >gi|254822703|ref|ZP_05227704.1| hypothetical protein MintA_22429 [Mycobacterium intracellulare ATCC 13950] Length=146 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/52 (52%), Positives = 37/52 (72%), Gaps = 0/52 (0%) Query 14 LASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQLV 65 +A+Y+THGARR T NQFE + + MA LI+GE+ GF V++ G V GQL+ Sbjct 95 IAAYITHGARRDTVNQFENADRSTELAMAALIVGEIGGFGVLLAGFVVGQLL 146 >gi|169631761|ref|YP_001705410.1| hypothetical protein MAB_4688 [Mycobacterium abscessus ATCC 19977] gi|169243728|emb|CAM64756.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=147 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 0/50 (0%) Query 14 LASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQ 63 +ASY+ HGA R T NQFE+P G + MALLILGE+ GF+V++ G Q Sbjct 95 IASYIAHGALRDTTNQFEKPTIGLYLAMALLILGEIGGFSVLLAGFARAQ 144 >gi|118464986|ref|YP_879464.1| hypothetical protein MAV_0170 [Mycobacterium avium 104] gi|118166273|gb|ABK67170.1| conserved hypothetical protein [Mycobacterium avium 104] Length=146 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/49 (58%), Positives = 33/49 (68%), Gaps = 0/49 (0%) Query 16 SYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQL 64 +Y+ HGARR T NQFERP G MA LI+GE+ GF V+ G V GQL Sbjct 97 AYIGHGARRDTVNQFERPTAGLRWSMAALIVGEIGGFGVLFAGFVAGQL 145 >gi|41406274|ref|NP_959110.1| hypothetical protein MAP0176 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394622|gb|AAS02493.1| hypothetical protein MAP_0176 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336462077|gb|EGO40921.1| hypothetical protein MAPs_24420 [Mycobacterium avium subsp. paratuberculosis S397] Length=146 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/49 (58%), Positives = 33/49 (68%), Gaps = 0/49 (0%) Query 16 SYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQL 64 +Y+ HGARR T NQFERP G MA LI+GE+ GF V+ G V GQL Sbjct 97 AYIGHGARRDTVNQFERPTAGLRWSMAALIVGEIGGFGVLFAGFVAGQL 145 >gi|254773227|ref|ZP_05214743.1| hypothetical protein MaviaA2_00896 [Mycobacterium avium subsp. avium ATCC 25291] Length=146 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/49 (58%), Positives = 33/49 (68%), Gaps = 0/49 (0%) Query 16 SYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQL 64 +Y+ HGARR T NQFERP G MA LI+GE+ GF V+ G V GQL Sbjct 97 AYIGHGARRDTVNQFERPTAGLRWSMAALIVGEIGGFGVLFAGFVAGQL 145 >gi|342860111|ref|ZP_08716763.1| hypothetical protein MCOL_14570 [Mycobacterium colombiense CECT 3035] gi|342132489|gb|EGT85718.1| hypothetical protein MCOL_14570 [Mycobacterium colombiense CECT 3035] Length=146 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/52 (56%), Positives = 36/52 (70%), Gaps = 0/52 (0%) Query 14 LASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQLV 65 +A+YV+HGARR T NQFE G+ MA LI GE+ GF V++ G V GQLV Sbjct 95 IAAYVSHGARRDTVNQFENADGRLGLAMAALIAGEIGGFTVLLAGFVAGQLV 146 >gi|312141264|ref|YP_004008600.1| integral membrane protein [Rhodococcus equi 103S] gi|325673903|ref|ZP_08153593.1| integral membrane protein [Rhodococcus equi ATCC 33707] gi|311890603|emb|CBH49921.1| putative integral membrane protein [Rhodococcus equi 103S] gi|325555168|gb|EGD24840.1| integral membrane protein [Rhodococcus equi ATCC 33707] Length=141 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 34/52 (66%), Gaps = 0/52 (0%) Query 14 LASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQLV 65 + SY+ HGARR T NQFERP V M L++GE+ FAV++ G V QL+ Sbjct 90 IGSYIAHGARRDTTNQFERPDAALRVAMIALVVGEVGAFAVLLAGFVAAQLL 141 >gi|145220993|ref|YP_001131671.1| hypothetical protein Mflv_0389 [Mycobacterium gilvum PYR-GCK] gi|315442036|ref|YP_004074915.1| hypothetical protein Mspyr1_03670 [Mycobacterium sp. Spyr1] gi|145213479|gb|ABP42883.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] gi|315260339|gb|ADT97080.1| hypothetical protein Mspyr1_03670 [Mycobacterium sp. Spyr1] Length=143 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/51 (50%), Positives = 33/51 (65%), Gaps = 0/51 (0%) Query 14 LASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQL 64 +A+Y+ HG RR T NQFE + MA LI+GE+ GFAV++ G V GQ Sbjct 92 IATYIAHGIRRDTTNQFEHVDTTIRIAMAALIVGEIGGFAVLLAGFVAGQF 142 >gi|319950150|ref|ZP_08024086.1| integral membrane protein [Dietzia cinnamea P4] gi|319436191|gb|EFV91375.1| integral membrane protein [Dietzia cinnamea P4] Length=142 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/51 (50%), Positives = 33/51 (65%), Gaps = 0/51 (0%) Query 14 LASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQL 64 + SY+ HGA + T NQFERP + M LI+GE+ GFAV++ G V GQ Sbjct 90 IGSYILHGALKDTTNQFERPTVALHLGMVALIVGEIGGFAVLLAGFVAGQF 140 >gi|333992813|ref|YP_004525427.1| hypothetical protein JDM601_4173 [Mycobacterium sp. JDM601] gi|333488781|gb|AEF38173.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=143 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/51 (50%), Positives = 33/51 (65%), Gaps = 0/51 (0%) Query 14 LASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQL 64 +ASY+ HGA R T NQFE+ V M LLI+GE+ GFAV++ G G+ Sbjct 93 IASYMLHGALRDTTNQFEKAGPLLKVGMVLLIIGEIGGFAVLLAGFGVGEF 143 >gi|226307934|ref|YP_002767894.1| hypothetical protein RER_44470 [Rhodococcus erythropolis PR4] gi|229495054|ref|ZP_04388800.1| integral membrane protein [Rhodococcus erythropolis SK121] gi|226187051|dbj|BAH35155.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] gi|229317985|gb|EEN83860.1| integral membrane protein [Rhodococcus erythropolis SK121] Length=141 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/49 (52%), Positives = 31/49 (64%), Gaps = 0/49 (0%) Query 16 SYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQL 64 SY+ HGA + T NQFE + M LLILGE+ GFAV++ G V GQ Sbjct 92 SYIAHGAMKDTDNQFESAGPPLHLGMFLLILGEVGGFAVLLAGFVKGQF 140 >gi|296395170|ref|YP_003660054.1| hypothetical protein Srot_2791 [Segniliparus rotundus DSM 44985] gi|296182317|gb|ADG99223.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length=143 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/53 (51%), Positives = 35/53 (67%), Gaps = 8/53 (15%) Query 14 LASYVTHGARRATANQFERPAKGAGVL----MALLILGEMAGFAVVVTGVVFG 62 +A+Y HG RR T NQF GAG L MALL++GE+ GFAVV +G ++G Sbjct 93 IAAYAYHGVRRDTENQF----AGAGWLLRANMALLVVGEIGGFAVVFSGFLWG 141 >gi|118471210|ref|YP_890656.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155] gi|118172497|gb|ABK73393.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155] Length=120 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/51 (53%), Positives = 32/51 (63%), Gaps = 4/51 (7%) Query 16 SYVTHGARRATANQFER--PAKGAGVLMALLILGEMAGFAVVVTGVVFGQL 64 +Y+ HGARR T NQFE PA AG M LI+ E+ GF V+ TG V GQ Sbjct 71 AYILHGARRDTTNQFENATPALHAG--MYALIVAEIGGFCVLFTGFVAGQF 119 >gi|120401321|ref|YP_951150.1| hypothetical protein Mvan_0295 [Mycobacterium vanbaalenii PYR-1] gi|119954139|gb|ABM11144.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=153 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/51 (50%), Positives = 30/51 (59%), Gaps = 0/51 (0%) Query 14 LASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQL 64 +A+YV HG RR T NQFER V MA LI+GE+ G V+V G Q Sbjct 102 IATYVMHGMRRDTTNQFERIDTTVRVAMAALIVGEIGGTVVLVAGFAAAQF 152 >gi|326383329|ref|ZP_08205017.1| hypothetical protein SCNU_10344 [Gordonia neofelifaecis NRRL B-59395] gi|326198079|gb|EGD55265.1| hypothetical protein SCNU_10344 [Gordonia neofelifaecis NRRL B-59395] Length=141 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 0/50 (0%) Query 14 LASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQ 63 +ASY HG RR T NQF + V M LI+GE+ G AV+V G + Q Sbjct 90 IASYCLHGLRRDTTNQFHPASPALTVSMLALIVGEVGGSAVIVLGFIVEQ 139 >gi|158520879|ref|YP_001528749.1| hypothetical protein Dole_0862 [Desulfococcus oleovorans Hxd3] gi|158509705|gb|ABW66672.1| conserved hypothetical protein [Desulfococcus oleovorans Hxd3] Length=150 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 24/54 (45%), Positives = 30/54 (56%), Gaps = 9/54 (16%) Query 16 SYVTHGARRATANQ---------FERPAKGAGVLMALLILGEMAGFAVVVTGVV 60 SY+ HG R TANQ F PA G V M++LI+GE GF V+ GV+ Sbjct 90 SYMLHGLLRDTANQLKPPFSLGRFPLPAWGMPVFMSVLIIGETGGFLVLFYGVL 143 >gi|262199893|ref|YP_003271102.1| hypothetical protein Hoch_6745 [Haliangium ochraceum DSM 14365] gi|262083240|gb|ACY19209.1| hypothetical protein Hoch_6745 [Haliangium ochraceum DSM 14365] Length=178 Score = 41.2 bits (95), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/55 (44%), Positives = 31/55 (57%), Gaps = 9/55 (16%) Query 14 LASYVTHGARRATANQFERPAK-GAGVL--------MALLILGEMAGFAVVVTGV 59 + +YV HG R T NQ ERP + G VL M +LI+ E+ GFAV+ GV Sbjct 119 ITTYVIHGVLRDTDNQLERPHRLGRHVLPPVVIAAFMWMLIIAEIGGFAVLFAGV 173 >gi|317509146|ref|ZP_07966771.1| hypothetical protein HMPREF9336_03143 [Segniliparus rugosus ATCC BAA-974] gi|316252552|gb|EFV11997.1| hypothetical protein HMPREF9336_03143 [Segniliparus rugosus ATCC BAA-974] Length=143 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 19/49 (39%), Positives = 27/49 (56%), Gaps = 0/49 (0%) Query 14 LASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFG 62 + SY HG R+ T NQF+ M L +GE+ GFAV+ G ++G Sbjct 93 IGSYTYHGVRKDTTNQFKDAGWFLRAGMVALAVGEIGGFAVIFAGFLWG 141 >gi|343925054|ref|ZP_08764586.1| hypothetical protein GOALK_033_00450 [Gordonia alkanivorans NBRC 16433] gi|343764985|dbj|GAA11512.1| hypothetical protein GOALK_033_00450 [Gordonia alkanivorans NBRC 16433] Length=147 Score = 38.5 bits (88), Expect = 0.38, Method: Compositional matrix adjust. Identities = 17/36 (48%), Positives = 23/36 (64%), Gaps = 0/36 (0%) Query 14 LASYVTHGARRATANQFERPAKGAGVLMALLILGEM 49 +A+Y GA R T NQFE+P G + M LI+GE+ Sbjct 97 IAAYCIRGALRDTTNQFEKPMPGTYLFMLALIVGEI 132 >gi|333918196|ref|YP_004491777.1| hypothetical protein AS9A_0522 [Amycolicicoccus subflavus DQS3-9A1] gi|333480417|gb|AEF38977.1| hypothetical protein AS9A_0522 [Amycolicicoccus subflavus DQS3-9A1] Length=142 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/51 (38%), Positives = 25/51 (50%), Gaps = 0/51 (0%) Query 14 LASYVTHGARRATANQFERPAKGAGVLMALLILGEMAGFAVVVTGVVFGQL 64 + SYV HG +R T NQF P M LI E+ GF ++ G + Q Sbjct 92 IGSYVFHGWKRDTDNQFAHPVGLLHPFMIALIAAEIGGFVILFAGFINTQF 142 >gi|311697155|gb|ADQ00027.1| conserved hypothetical protein, membrane [Marinobacter adhaerens HP15] Length=73 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/55 (35%), Positives = 30/55 (55%), Gaps = 9/55 (16%) Query 16 SYVTHGARRATANQFERPAKGAGV---------LMALLILGEMAGFAVVVTGVVF 61 +Y HG + T NQ +RP + G+ M +LILGE+ G A+++ GV+ Sbjct 19 TYAVHGWLKDTDNQLQRPHRLGGITIPGNVIRIYMLMLILGEIGGTAILLAGVLL 73 >gi|262279333|ref|ZP_06057118.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262259684|gb|EEY78417.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length=151 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 17/54 (32%), Positives = 28/54 (52%), Gaps = 9/54 (16%) Query 17 YVTHGARRATANQFERPAK---------GAGVLMALLILGEMAGFAVVVTGVVF 61 Y+ HG + T NQF+RP + ++M LI+ E+ A++V G +F Sbjct 93 YIVHGYLKDTTNQFKRPHRLGRLNLPSWLMSLMMVALIIAELLATAILVMGTIF 146 >gi|262378374|ref|ZP_06071531.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|262299659|gb|EEY87571.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length=154 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/58 (33%), Positives = 30/58 (52%), Gaps = 11/58 (18%) Query 16 SYVTHGARRATANQFERPAKGAG---------VLMALLILGEM--AGFAVVVTGVVFG 62 SY+ HG + T NQF+ P + + M LL++GE+ +GF ++ T FG Sbjct 95 SYILHGVLKDTVNQFQVPHQLGKWYLPKILMTIFMFLLVIGELVASGFLIIGTAYYFG 152 >gi|304309695|ref|YP_003809293.1| hypothetical protein HDN1F_00430 [gamma proteobacterium HdN1] gi|301795428|emb|CBL43626.1| conserved hypothetical protein [gamma proteobacterium HdN1] Length=168 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/52 (43%), Positives = 29/52 (56%), Gaps = 9/52 (17%) Query 16 SYVTHGARRATANQFERP-AKGAGVL--------MALLILGEMAGFAVVVTG 58 +Y+THG + T NQ RP G+G L M LI+GE+ GFAV+ G Sbjct 111 TYITHGFLQDTENQLARPHVLGSGHLPGFLVQGYMVALIVGEIGGFAVLFWG 162 >gi|255320480|ref|ZP_05361661.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] gi|255302452|gb|EET81688.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] Length=152 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/58 (33%), Positives = 30/58 (52%), Gaps = 11/58 (18%) Query 16 SYVTHGARRATANQFERPAKGAG---------VLMALLILGEM--AGFAVVVTGVVFG 62 SY+ HG + T NQF+ P + + M LL++GE+ +GF ++ T FG Sbjct 93 SYILHGVLKDTVNQFQVPHQLGKWYLPKILMTIFMFLLVIGELVASGFLIIGTAYYFG 150 Lambda K H 0.327 0.140 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130377649416 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40