BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3861

Length=108
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610997|ref|NP_218378.1|  hypothetical protein Rv3861 [Mycoba...   211    2e-53
gi|340628833|ref|YP_004747285.1|  hypothetical protein MCAN_38831...   209    8e-53


>gi|15610997|ref|NP_218378.1| hypothetical protein Rv3861 [Mycobacterium tuberculosis H37Rv]
 gi|31795035|ref|NP_857528.1| hypothetical protein Mb3891 [Mycobacterium bovis AF2122/97]
 gi|121639779|ref|YP_980003.1| hypothetical protein BCG_3924 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 22 more sequence titles
 Length=108

 Score =  211 bits (538),  Expect = 2e-53, Method: Compositional matrix adjust.
 Identities = 107/108 (99%), Positives = 108/108 (100%), Gaps = 0/108 (0%)

Query  1    VTWLADPVGNSRIARAQACKTSISAPIVESWRAQRGAQCGQREKSCRCSRAVHIQGISPP  60
            +TWLADPVGNSRIARAQACKTSISAPIVESWRAQRGAQCGQREKSCRCSRAVHIQGISPP
Sbjct  1    MTWLADPVGNSRIARAQACKTSISAPIVESWRAQRGAQCGQREKSCRCSRAVHIQGISPP  60

Query  61   LFRRPLEPAVQAAVASCRLGRHPVVAHRVTVALGQGSQLAQRECPRPA  108
            LFRRPLEPAVQAAVASCRLGRHPVVAHRVTVALGQGSQLAQRECPRPA
Sbjct  61   LFRRPLEPAVQAAVASCRLGRHPVVAHRVTVALGQGSQLAQRECPRPA  108


>gi|340628833|ref|YP_004747285.1| hypothetical protein MCAN_38831 [Mycobacterium canettii CIPT 
140010059]
 gi|340007023|emb|CCC46214.1| hypothetical protein MCAN_38831 [Mycobacterium canettii CIPT 
140010059]
Length=108

 Score =  209 bits (533),  Expect = 8e-53, Method: Compositional matrix adjust.
 Identities = 106/108 (99%), Positives = 107/108 (99%), Gaps = 0/108 (0%)

Query  1    VTWLADPVGNSRIARAQACKTSISAPIVESWRAQRGAQCGQREKSCRCSRAVHIQGISPP  60
            +TWLADPVGNSRIARAQACKTSISAPIVESWRAQRGA CGQREKSCRCSRAVHIQGISPP
Sbjct  1    MTWLADPVGNSRIARAQACKTSISAPIVESWRAQRGAHCGQREKSCRCSRAVHIQGISPP  60

Query  61   LFRRPLEPAVQAAVASCRLGRHPVVAHRVTVALGQGSQLAQRECPRPA  108
            LFRRPLEPAVQAAVASCRLGRHPVVAHRVTVALGQGSQLAQRECPRPA
Sbjct  61   LFRRPLEPAVQAAVASCRLGRHPVVAHRVTVALGQGSQLAQRECPRPA  108



Lambda     K      H
   0.322    0.131    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129996839040


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40