BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3862c
Length=116
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610998|ref|NP_218379.1| transcriptional regulatory protein ... 237 3e-61
gi|289441303|ref|ZP_06431047.1| transcriptional regulator whiB-l... 236 6e-61
gi|326905698|gb|EGE52631.1| transcriptional regulator whiB-like ... 235 2e-60
gi|289572515|ref|ZP_06452742.1| transcription factor WhiB [Mycob... 219 1e-55
gi|254548866|ref|ZP_05139313.1| transcriptional regulator whiB-l... 196 8e-49
gi|240168341|ref|ZP_04747000.1| hypothetical protein MkanA1_0345... 174 3e-42
gi|183985408|ref|YP_001853699.1| hypothetical protein MMAR_5437 ... 173 8e-42
gi|240167906|ref|ZP_04746565.1| putative transcriptional regulat... 155 2e-36
gi|289764052|ref|ZP_06523430.1| LOW QUALITY PROTEIN: transcripti... 153 7e-36
gi|108797038|ref|YP_637235.1| transcription factor WhiB [Mycobac... 139 2e-31
gi|118473042|ref|YP_884469.1| transcription factor WhiB family p... 133 1e-29
gi|145221373|ref|YP_001132051.1| transcription factor WhiB [Myco... 129 2e-28
gi|120401095|ref|YP_950924.1| transcription factor WhiB [Mycobac... 127 6e-28
gi|145222955|ref|YP_001133633.1| transcription factor WhiB [Myco... 114 6e-24
gi|120405232|ref|YP_955061.1| transcription factor WhiB [Mycobac... 112 2e-23
gi|315441490|ref|YP_004074367.1| Transcription factor WhiB [Myco... 95.5 2e-18
gi|119854979|ref|YP_935584.1| hypothetical protein Mkms_5586 [My... 94.4 5e-18
gi|296165691|ref|ZP_06848209.1| transcription factor WhiB family... 85.9 2e-15
gi|256825718|ref|YP_003149678.1| Transcription factor WhiB [Kyto... 43.9 0.009
gi|119854977|ref|YP_935582.1| transcription factor WhiB [Mycobac... 42.0 0.032
gi|269955595|ref|YP_003325384.1| transcription factor WhiB [Xyla... 38.1 0.39
gi|296270922|ref|YP_003653554.1| transcription factor WhiB [Ther... 37.4 0.81
gi|342861151|ref|ZP_08717800.1| transcription factor WhiB [Mycob... 37.0 1.00
gi|330469970|ref|YP_004407713.1| transcription factor whib [Verr... 36.6 1.1
gi|240171131|ref|ZP_04749790.1| hypothetical protein MkanA1_1760... 36.6 1.3
gi|296163994|ref|ZP_06846619.1| transcriptional regulatory prote... 36.2 1.5
gi|339753003|gb|AEJ93031.1| gp56 [Mycobacterium phage Shauna1] 36.2 1.6
gi|21234091|ref|NP_639668.1| putative regulatory protein [Strept... 36.2 1.7
gi|183983887|ref|YP_001852178.1| transcriptional regulatory prot... 36.2 1.8
gi|169245973|gb|ACA50994.1| transcriptional regulatory protein [... 36.2 1.8
gi|169245951|gb|ACA50972.1| transcriptional regulatory protein [... 36.2 1.9
gi|302538622|ref|ZP_07290964.1| transcription factor WhiB [Strep... 35.8 2.0
gi|325674615|ref|ZP_08154302.1| transcription regulator WhiB [Rh... 35.8 2.1
gi|326331935|ref|ZP_08198221.1| transcription factor WhiB [Nocar... 35.8 2.2
gi|326383315|ref|ZP_08205003.1| transcriptional regulatory prote... 35.8 2.3
gi|339782877|gb|AEK08597.1| gp53 [Mycobacterium phage DLane] 35.8 2.4
gi|291084908|ref|YP_003495191.1| gp50 [Mycobacterium phage Ardmo... 35.4 2.5
gi|238060917|ref|ZP_04605626.1| transcription factor WhiB [Micro... 35.4 2.6
gi|206599934|ref|YP_002241740.1| gp55 [Mycobacterium phage Fruit... 35.4 3.1
gi|302869872|ref|YP_003838509.1| transcription factor WhiB [Micr... 35.0 3.3
gi|49146105|ref|YP_025543.1| transcriptional regulatory protein ... 35.0 3.4
gi|209418045|ref|YP_002274074.1| transcriptional regulatory prot... 34.7 4.6
gi|226362112|ref|YP_002779890.1| WhiB family regulatory protein ... 34.7 4.8
gi|134097689|ref|YP_001103350.1| WhiB-family transcriptional reg... 34.7 4.8
gi|160700717|ref|YP_001552397.1| gp68 [Mycobacterium phage Giles... 34.7 4.8
gi|320164042|gb|EFW40941.1| mitochondrial carrier protein [Capsa... 34.7 4.9
gi|296169036|ref|ZP_06850698.1| transcription factor WhiB [Mycob... 34.7 5.3
gi|334336361|ref|YP_004541513.1| transcription factor WhiB [Isop... 34.7 5.5
gi|333029084|ref|ZP_08457147.1| putative transcription factor Wh... 34.3 5.7
gi|329937704|ref|ZP_08287223.1| transcriptional regulatory prote... 34.3 5.8
>gi|15610998|ref|NP_218379.1| transcriptional regulatory protein WHIB-like WHIB6 [Mycobacterium
tuberculosis H37Rv]
gi|15843494|ref|NP_338531.1| hypothetical protein MT3976 [Mycobacterium tuberculosis CDC1551]
gi|31795036|ref|NP_857529.1| putative transcriptional regulatory protein WHIB-like WHIB6 [Mycobacterium
bovis AF2122/97]
35 more sequence titles
Length=116
Score = 237 bits (605), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/116 (100%), Positives = 116/116 (100%), Gaps = 0/116 (0%)
Query 1 MRYAFAAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRW 60
MRYAFAAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRW
Sbjct 1 MRYAFAAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRW 60
Query 61 LCARDAVESAGAEGLWAGVVIPESGRARAFALGQLRSLAERNGYPVRDHRVSAQSA 116
LCARDAVESAGAEGLWAGVVIPESGRARAFALGQLRSLAERNGYPVRDHRVSAQSA
Sbjct 61 LCARDAVESAGAEGLWAGVVIPESGRARAFALGQLRSLAERNGYPVRDHRVSAQSA 116
>gi|289441303|ref|ZP_06431047.1| transcriptional regulator whiB-like whiB6 [Mycobacterium tuberculosis
T46]
gi|289572120|ref|ZP_06452347.1| transcriptional regulator whiB-like whiB6 [Mycobacterium tuberculosis
T17]
gi|289748395|ref|ZP_06507773.1| transcriptional regulator whiB-like whiB6 [Mycobacterium tuberculosis
T92]
gi|289414222|gb|EFD11462.1| transcriptional regulator whiB-like whiB6 [Mycobacterium tuberculosis
T46]
gi|289545875|gb|EFD49522.1| transcriptional regulator whiB-like whiB6 [Mycobacterium tuberculosis
T17]
gi|289688982|gb|EFD56411.1| transcriptional regulator whiB-like whiB6 [Mycobacterium tuberculosis
T92]
Length=116
Score = 236 bits (603), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 115/116 (99%), Positives = 116/116 (100%), Gaps = 0/116 (0%)
Query 1 MRYAFAAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRW 60
MRYAFAAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLC+ACPRRW
Sbjct 1 MRYAFAAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCQACPRRW 60
Query 61 LCARDAVESAGAEGLWAGVVIPESGRARAFALGQLRSLAERNGYPVRDHRVSAQSA 116
LCARDAVESAGAEGLWAGVVIPESGRARAFALGQLRSLAERNGYPVRDHRVSAQSA
Sbjct 61 LCARDAVESAGAEGLWAGVVIPESGRARAFALGQLRSLAERNGYPVRDHRVSAQSA 116
>gi|326905698|gb|EGE52631.1| transcriptional regulator whiB-like whiB6 [Mycobacterium tuberculosis
W-148]
Length=116
Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 115/116 (99%), Positives = 115/116 (99%), Gaps = 0/116 (0%)
Query 1 MRYAFAAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRW 60
MRYAFAAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRWTTTPDDEAK LCRACPRRW
Sbjct 1 MRYAFAAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRWTTTPDDEAKPLCRACPRRW 60
Query 61 LCARDAVESAGAEGLWAGVVIPESGRARAFALGQLRSLAERNGYPVRDHRVSAQSA 116
LCARDAVESAGAEGLWAGVVIPESGRARAFALGQLRSLAERNGYPVRDHRVSAQSA
Sbjct 61 LCARDAVESAGAEGLWAGVVIPESGRARAFALGQLRSLAERNGYPVRDHRVSAQSA 116
>gi|289572515|ref|ZP_06452742.1| transcription factor WhiB [Mycobacterium tuberculosis K85]
gi|289536946|gb|EFD41524.1| transcription factor WhiB [Mycobacterium tuberculosis K85]
Length=258
Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/107 (99%), Positives = 107/107 (100%), Gaps = 0/107 (0%)
Query 1 MRYAFAAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRW 60
MRYAFAAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRW
Sbjct 1 MRYAFAAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRW 60
Query 61 LCARDAVESAGAEGLWAGVVIPESGRARAFALGQLRSLAERNGYPVR 107
LCARDAVESAGAEGLWAGVVIPESGRARAFALGQLRSLAERNGYP+R
Sbjct 61 LCARDAVESAGAEGLWAGVVIPESGRARAFALGQLRSLAERNGYPLR 107
>gi|254548866|ref|ZP_05139313.1| transcriptional regulator whiB-like whiB6 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|294995172|ref|ZP_06800863.1| transcriptional regulator whiB-like whiB6 [Mycobacterium tuberculosis
210]
gi|297636547|ref|ZP_06954327.1| transcriptional regulator whiB-like whiB6 [Mycobacterium tuberculosis
KZN 4207]
27 more sequence titles
Length=96
Score = 196 bits (499), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 96/96 (100%), Positives = 96/96 (100%), Gaps = 0/96 (0%)
Query 21 MTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVV 80
MTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVV
Sbjct 1 MTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVV 60
Query 81 IPESGRARAFALGQLRSLAERNGYPVRDHRVSAQSA 116
IPESGRARAFALGQLRSLAERNGYPVRDHRVSAQSA
Sbjct 61 IPESGRARAFALGQLRSLAERNGYPVRDHRVSAQSA 96
>gi|240168341|ref|ZP_04747000.1| hypothetical protein MkanA1_03452 [Mycobacterium kansasii ATCC
12478]
Length=95
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/96 (91%), Positives = 90/96 (94%), Gaps = 1/96 (1%)
Query 21 MTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVV 80
MT TALYEVPLGVCTQDPDRWTTTPD+EAK +CRACPRRW CARDAVES GAEGLWAGVV
Sbjct 1 MTATALYEVPLGVCTQDPDRWTTTPDNEAKAMCRACPRRWACARDAVESPGAEGLWAGVV 60
Query 81 IPESGRARAFALGQLRSLAERNGYPVRDHRVSAQSA 116
IPESGRARAFALGQLRSLAERNGYPVR+ RV AQSA
Sbjct 61 IPESGRARAFALGQLRSLAERNGYPVRE-RVVAQSA 95
>gi|183985408|ref|YP_001853699.1| hypothetical protein MMAR_5437 [Mycobacterium marinum M]
gi|183178734|gb|ACC43844.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=95
Score = 173 bits (438), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 84/96 (88%), Positives = 91/96 (95%), Gaps = 1/96 (1%)
Query 21 MTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVV 80
MT TALYE+PLGVCTQDPDRWTTTPD+EAKTLCRACPRRW CARDAVES GAEGLWAGVV
Sbjct 1 MTATALYEIPLGVCTQDPDRWTTTPDEEAKTLCRACPRRWACARDAVESPGAEGLWAGVV 60
Query 81 IPESGRARAFALGQLRSLAERNGYPVRDHRVSAQSA 116
IPE+GRARAFALGQLRSLAERNG+P R+ R++AQSA
Sbjct 61 IPEAGRARAFALGQLRSLAERNGFPARE-RITAQSA 95
>gi|240167906|ref|ZP_04746565.1| putative transcriptional regulatory protein WhiB-like [Mycobacterium
kansasii ATCC 12478]
Length=93
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/88 (83%), Positives = 80/88 (91%), Gaps = 0/88 (0%)
Query 21 MTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVV 80
MT LY++PLG CTQDPDRWTT+PDDEAK LCRACP RWLCAR+AVES GAEGLWAGVV
Sbjct 1 MTAPVLYDIPLGACTQDPDRWTTSPDDEAKALCRACPCRWLCAREAVESPGAEGLWAGVV 60
Query 81 IPESGRARAFALGQLRSLAERNGYPVRD 108
IP +GRARAFALGQLRSLAER+GYPVR+
Sbjct 61 IPATGRARAFALGQLRSLAERHGYPVRE 88
>gi|289764052|ref|ZP_06523430.1| LOW QUALITY PROTEIN: transcriptional regulatory protein [Mycobacterium
tuberculosis GM 1503]
gi|289711558|gb|EFD75574.1| LOW QUALITY PROTEIN: transcriptional regulatory protein [Mycobacterium
tuberculosis GM 1503]
Length=118
Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MRYAFAAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRW 60
MRYAFAAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRW
Sbjct 1 MRYAFAAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRW 60
Query 61 LCARDAVESAGAE 73
LCARDAVESAGAE
Sbjct 61 LCARDAVESAGAE 73
>gi|108797038|ref|YP_637235.1| transcription factor WhiB [Mycobacterium sp. MCS]
gi|119866123|ref|YP_936075.1| transcription factor WhiB [Mycobacterium sp. KMS]
gi|126432660|ref|YP_001068351.1| transcription factor WhiB [Mycobacterium sp. JLS]
gi|108767457|gb|ABG06179.1| transcription factor WhiB [Mycobacterium sp. MCS]
gi|119692212|gb|ABL89285.1| transcription factor WhiB [Mycobacterium sp. KMS]
gi|126232460|gb|ABN95860.1| transcription factor WhiB [Mycobacterium sp. JLS]
Length=97
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/97 (70%), Positives = 77/97 (80%), Gaps = 1/97 (1%)
Query 21 MTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVV 80
M+ EVP+G CT+DP+RWTTT D+EAK +CR CPRRW+CARDAVE AEGLWAG+V
Sbjct 1 MSNVTFLEVPVGACTRDPERWTTTADEEAKAICRGCPRRWMCARDAVELPRAEGLWAGIV 60
Query 81 IPESGRARAFALGQLRSLAERNGYPVRD-HRVSAQSA 116
IPE+GR R FAL QLRSLAERNGYPVR RV +SA
Sbjct 61 IPEAGRGRTFALKQLRSLAERNGYPVRAIRRVFPESA 97
>gi|118473042|ref|YP_884469.1| transcription factor WhiB family protein [Mycobacterium smegmatis
str. MC2 155]
gi|118174329|gb|ABK75225.1| transcription factor WhiB family protein [Mycobacterium smegmatis
str. MC2 155]
Length=97
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/91 (66%), Positives = 71/91 (79%), Gaps = 0/91 (0%)
Query 21 MTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVV 80
MT +PLGVCT DP+RWT+ PD +AK +CR CPRRWLCAR+A E AEGLWAG++
Sbjct 1 MTALMTNGIPLGVCTSDPERWTSAPDAQAKVICRECPRRWLCAREACELPRAEGLWAGIM 60
Query 81 IPESGRARAFALGQLRSLAERNGYPVRDHRV 111
+PESGR R FAL QLRSLAERNGYPVR ++
Sbjct 61 VPESGRGRTFALKQLRSLAERNGYPVRKTKL 91
>gi|145221373|ref|YP_001132051.1| transcription factor WhiB [Mycobacterium gilvum PYR-GCK]
gi|315441743|ref|YP_004074622.1| hypothetical protein Mspyr1_00530 [Mycobacterium sp. Spyr1]
gi|145213859|gb|ABP43263.1| transcription factor WhiB [Mycobacterium gilvum PYR-GCK]
gi|315260046|gb|ADT96787.1| hypothetical protein Mspyr1_00530 [Mycobacterium sp. Spyr1]
Length=97
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/91 (64%), Positives = 73/91 (81%), Gaps = 0/91 (0%)
Query 21 MTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVV 80
M + + P+G CT+DP+RWTTT DD+AK +CR+CPRRWLCAR+A ES AEGLWAG+
Sbjct 1 MNAKSWDDTPIGECTRDPERWTTTADDDAKAICRSCPRRWLCAREAYESPRAEGLWAGIY 60
Query 81 IPESGRARAFALGQLRSLAERNGYPVRDHRV 111
+PE+GR R FAL QL+SLAE+NGYPV + RV
Sbjct 61 VPEAGRGRTFALRQLKSLAEQNGYPVGERRV 91
>gi|120401095|ref|YP_950924.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1]
gi|119953913|gb|ABM10918.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1]
Length=97
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 58/91 (64%), Positives = 71/91 (79%), Gaps = 0/91 (0%)
Query 21 MTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVV 80
M E P+G CT+DP+RWTTT DDEAK +CR+CPRRWLCAR+A ES EGLWAG+
Sbjct 1 MNAIPWDETPIGECTRDPERWTTTADDEAKAICRSCPRRWLCAREACESPRVEGLWAGIY 60
Query 81 IPESGRARAFALGQLRSLAERNGYPVRDHRV 111
+PE+GR R FAL QL+SLAE++GY VR+ RV
Sbjct 61 VPEAGRGRTFALRQLKSLAEQHGYTVRERRV 91
>gi|145222955|ref|YP_001133633.1| transcription factor WhiB [Mycobacterium gilvum PYR-GCK]
gi|315443417|ref|YP_004076296.1| transcription factor WhiB [Mycobacterium sp. Spyr1]
gi|145215441|gb|ABP44845.1| transcription factor WhiB [Mycobacterium gilvum PYR-GCK]
gi|315261720|gb|ADT98461.1| Transcription factor WhiB [Mycobacterium sp. Spyr1]
Length=90
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/74 (73%), Positives = 61/74 (83%), Gaps = 0/74 (0%)
Query 34 CTQDPDRWTTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVIPESGRARAFALG 93
CT+DPDRWTTT DD AK LCRACPRRW CA++A + GA GLWAG+V+PE GR R FAL
Sbjct 15 CTRDPDRWTTTADDGAKALCRACPRRWQCAKEACVTPGAVGLWAGIVLPEGGRNRQFALK 74
Query 94 QLRSLAERNGYPVR 107
QLRSLAERNG+ VR
Sbjct 75 QLRSLAERNGFSVR 88
>gi|120405232|ref|YP_955061.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1]
gi|119958050|gb|ABM15055.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1]
Length=102
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/74 (71%), Positives = 59/74 (80%), Gaps = 0/74 (0%)
Query 34 CTQDPDRWTTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVIPESGRARAFALG 93
CT+DPDRW T D+ AK+LCRACPRRW CARDA + GA GLWAG+V+PE GR R FAL
Sbjct 27 CTRDPDRWMVTADEGAKSLCRACPRRWQCARDACVTPGAVGLWAGIVLPEGGRNRQFALK 86
Query 94 QLRSLAERNGYPVR 107
QLRSLAERNG+ R
Sbjct 87 QLRSLAERNGFSAR 100
>gi|315441490|ref|YP_004074367.1| Transcription factor WhiB [Mycobacterium sp. Spyr1]
gi|315265145|gb|ADU01886.1| Transcription factor WhiB [Mycobacterium sp. Spyr1]
Length=98
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/74 (60%), Positives = 54/74 (73%), Gaps = 1/74 (1%)
Query 34 CTQDPDRWTTTPDD-EAKTLCRACPRRWLCARDAVESAGAEGLWAGVVIPESGRARAFAL 92
C DPDRW +D E KTLCR CPRRW CA+DA+++ GAEG+W+GV +P+ GR R FAL
Sbjct 18 CVSDPDRWAAGGNDPELKTLCRGCPRRWQCAKDALDTPGAEGMWSGVHLPKEGRGRKFAL 77
Query 93 GQLRSLAERNGYPV 106
QLRSLA G+ V
Sbjct 78 RQLRSLAAHGGFDV 91
>gi|119854979|ref|YP_935584.1| hypothetical protein Mkms_5586 [Mycobacterium sp. KMS]
gi|119697697|gb|ABL94769.1| hypothetical protein Mkms_5586 [Mycobacterium sp. KMS]
Length=117
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/91 (54%), Positives = 57/91 (63%), Gaps = 6/91 (6%)
Query 22 TVTALYEVPL-----GVCTQDPDRWTTTPDD-EAKTLCRACPRRWLCARDAVESAGAEGL 75
TVT E P+ C DPDRW D E K LCR CPRRW CA+DA+++ GAEG+
Sbjct 21 TVTVTLERPVVRNSTQPCISDPDRWAAGGQDPELKALCRGCPRRWQCAKDALDTPGAEGM 80
Query 76 WAGVVIPESGRARAFALGQLRSLAERNGYPV 106
W+GV IP+ GR R FAL QLRSLA G V
Sbjct 81 WSGVHIPKEGRGRKFALRQLRSLAAHGGLHV 111
>gi|296165691|ref|ZP_06848209.1| transcription factor WhiB family protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898955|gb|EFG78443.1| transcription factor WhiB family protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=94
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/87 (53%), Positives = 56/87 (65%), Gaps = 5/87 (5%)
Query 23 VTALYEVPLGV----CTQDPDRWTTTPDDEA-KTLCRACPRRWLCARDAVESAGAEGLWA 77
+TA+ E P + C DPDRW +D K LCR CPRRWLCA +A+ + G EGL A
Sbjct 1 MTAMLEPPPVLITTPCVADPDRWADGGNDPTLKALCRGCPRRWLCANEALHTPGIEGLVA 60
Query 78 GVVIPESGRARAFALGQLRSLAERNGY 104
GV +P+ GRAR FAL QL+SLA GY
Sbjct 61 GVDVPKEGRARTFALRQLQSLAAYAGY 87
>gi|256825718|ref|YP_003149678.1| Transcription factor WhiB [Kytococcus sedentarius DSM 20547]
gi|256689111|gb|ACV06913.1| Transcription factor WhiB [Kytococcus sedentarius DSM 20547]
Length=96
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query 30 PLGVCTQDPDRW---TTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVIPESGR 86
PL DPD W T T + AK+LC ACP R LC A+E G+W G +I E+GR
Sbjct 20 PLPCLENDPDTWFADTPTGVEYAKSLCHACPVRTLCLEGALERREPWGVWGGELI-EAGR 78
>gi|119854977|ref|YP_935582.1| transcription factor WhiB [Mycobacterium sp. KMS]
gi|119697695|gb|ABL94767.1| transcription factor WhiB [Mycobacterium sp. KMS]
Length=234
Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/59 (46%), Positives = 33/59 (56%), Gaps = 8/59 (13%)
Query 28 EVPLGVCTQDPDRWTTTPDDEAKTL----CRACPRRWLCARDAVESAGAEGLWAGVVIP 82
EVPL C DPDRW D A+T C ACP R CA+ A++ G+WAG+ IP
Sbjct 14 EVPLA-CHTDPDRWF---DSGARTAALAECLACPHRRWCAQRALKYQPRWGMWAGIWIP 68
>gi|269955595|ref|YP_003325384.1| transcription factor WhiB [Xylanimonas cellulosilytica DSM 15894]
gi|269304276|gb|ACZ29826.1| transcription factor WhiB [Xylanimonas cellulosilytica DSM 15894]
Length=141
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/67 (38%), Positives = 30/67 (45%), Gaps = 3/67 (4%)
Query 18 NVDMTVTALYEVPLGVCTQDPDRW---TTTPDDEAKTLCRACPRRWLCARDAVESAGAEG 74
VD AL L T DP+ W T +EAK LCR CP C A++ A G
Sbjct 34 QVDTAFEALISGVLPCRTHDPELWFAEHTAQVEEAKALCRTCPLMAGCLAGAIDRAEPWG 93
Query 75 LWAGVVI 81
+W G V
Sbjct 94 VWGGEVF 100
>gi|296270922|ref|YP_003653554.1| transcription factor WhiB [Thermobispora bispora DSM 43833]
gi|296093709|gb|ADG89661.1| transcription factor WhiB [Thermobispora bispora DSM 43833]
Length=87
Score = 37.4 bits (85), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/51 (42%), Positives = 25/51 (50%), Gaps = 3/51 (5%)
Query 34 CTQDPDRWTTTPDDE---AKTLCRACPRRWLCARDAVESAGAEGLWAGVVI 81
C DPD W +E AK LC CP R C A+E A G+W G +I
Sbjct 15 CRSDPDLWFAESPEEVEFAKALCGGCPIRKACLAHALERAEPWGVWGGELI 65
>gi|342861151|ref|ZP_08717800.1| transcription factor WhiB [Mycobacterium colombiense CECT 3035]
gi|342131595|gb|EGT84865.1| transcription factor WhiB [Mycobacterium colombiense CECT 3035]
Length=90
Score = 37.0 bits (84), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/48 (48%), Positives = 26/48 (55%), Gaps = 3/48 (6%)
Query 37 DPDRW-TTTPDD--EAKTLCRACPRRWLCARDAVESAGAEGLWAGVVI 81
DPD W TP D AKTLC CP R C A+E A G+W G +I
Sbjct 17 DPDLWFADTPADLERAKTLCAGCPVRRQCLAAALERAEPWGVWGGEII 64
>gi|330469970|ref|YP_004407713.1| transcription factor whib [Verrucosispora maris AB-18-032]
gi|328812941|gb|AEB47113.1| transcription factor whib [Verrucosispora maris AB-18-032]
Length=121
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/48 (46%), Positives = 25/48 (53%), Gaps = 3/48 (6%)
Query 37 DPDRW---TTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVI 81
DPD W + T D AKTLC CP R C AVE A G+W G +
Sbjct 24 DPDLWFSDSPTDLDVAKTLCGDCPLRVECLAGAVERAEPWGVWGGEIF 71
>gi|240171131|ref|ZP_04749790.1| hypothetical protein MkanA1_17601 [Mycobacterium kansasii ATCC
12478]
gi|296165360|ref|ZP_06847901.1| transcription factor WhiB family protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899251|gb|EFG78716.1| transcription factor WhiB family protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=145
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (32%), Positives = 27/51 (53%), Gaps = 3/51 (5%)
Query 34 CTQDPDRWTTTPDDEAKTL--CRACPRRWLCARDAVESAGAEGLWAGVVIP 82
C +DP+ + P + + + C CP R C +AV + G+W GV++P
Sbjct 39 CQEDPELFFN-PRTKHRAIKRCNDCPFRGRCGYNAVATGATHGIWGGVILP 88
>gi|296163994|ref|ZP_06846619.1| transcriptional regulatory protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295900646|gb|EFG80027.1| transcriptional regulatory protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=140
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (51%), Gaps = 5/75 (6%)
Query 32 GVCT-QDPDRWTT--TPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVIPESGRAR 88
G+C +DPD W + + E+ +C CP CA++A+ +G+WA V +P +
Sbjct 16 GLCEYEDPDTWFRGYSGERESAAICTNCPIIVACAQNALRFGATDGVWASVAMPGARDVA 75
Query 89 AF--ALGQLRSLAER 101
A A QLR + R
Sbjct 76 ALKAARAQLREVIAR 90
>gi|339753003|gb|AEJ93031.1| gp56 [Mycobacterium phage Shauna1]
Length=133
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/77 (32%), Positives = 36/77 (47%), Gaps = 7/77 (9%)
Query 33 VCTQ-DPDRWTTTP---DDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVIPESGRAR 88
+CTQ DP+ W +D+AK C CP + C A+E+ G+W G E R
Sbjct 22 ICTQIDPESWFPEKGIRNDDAKETCWKCPAQARCLEYALENNEGWGIWGGFTEKER---R 78
Query 89 AFALGQLRSLAERNGYP 105
A G++ + +R P
Sbjct 79 AIRRGEMTPVNQRKMMP 95
>gi|21234091|ref|NP_639668.1| putative regulatory protein [Streptomyces coelicolor A3(2)]
gi|13620577|emb|CAC36616.1| putative regulatory protein [Streptomyces coelicolor A3(2)]
Length=102
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query 18 NVDMTVTALYEVPLGVCTQDPDRW----TTTPD----DEAKTLCRACPRRWLCARDAVES 69
+ D+ VT + T+DPD + TT P +EAK +CR CP C R A+E+
Sbjct 14 DADLPVTTNWRARSACRTEDPDLFFPIGTTGPALHQIEEAKAVCRRCPVMEHCLRWALEN 73
Query 70 AGAEGLWAGV 79
G+W G+
Sbjct 74 GQEHGVWGGL 83
>gi|183983887|ref|YP_001852178.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183177213|gb|ACC42323.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=174
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query 33 VCTQ-DPDRWTTTPDDEA--KTLCRACPRRWLCARDAVESAGAEGLWAGV 79
CTQ DPDR+ D+A K +C CP R C A+E + G+W G+
Sbjct 18 ACTQGDPDRFFPETKDKAAAKKVCNTCPVRAQCLNHAIEHDESWGIWGGL 67
>gi|169245973|gb|ACA50994.1| transcriptional regulatory protein [Mycobacterium marinum DL240490]
Length=136
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/85 (31%), Positives = 42/85 (50%), Gaps = 5/85 (5%)
Query 21 MTVTALYEVPLGVCT-QDPDRWTT--TPDDEAKTLCRACPRRWLCARDAVESAGAEGLWA 77
MT ++ +G+C D D+W + + + +A +C CP CA A+ +G+WA
Sbjct 1 MTAANPVKLGVGLCVYDDEDKWFSGYSSNRKAAAICANCPIIVSCAERALRLQVTDGVWA 60
Query 78 GVVIPESGRARAF--ALGQLRSLAE 100
VV+P S A A +LR + E
Sbjct 61 TVVMPGSRHTDALEQARARLRRVIE 85
>gi|169245951|gb|ACA50972.1| transcriptional regulatory protein [Mycobacterium marinum DL240490]
Length=136
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/85 (31%), Positives = 42/85 (50%), Gaps = 5/85 (5%)
Query 21 MTVTALYEVPLGVCT-QDPDRWTT--TPDDEAKTLCRACPRRWLCARDAVESAGAEGLWA 77
MT ++ +G+C D D+W + + + +A +C CP CA A+ +G+WA
Sbjct 1 MTAANPVKLGVGLCVYDDEDKWFSGYSSNRKAAAICANCPIIVSCAERALRLQVTDGVWA 60
Query 78 GVVIPESGRARAF--ALGQLRSLAE 100
VV+P S A A +LR + E
Sbjct 61 TVVMPGSRHTDALEQARARLRRVIE 85
>gi|302538622|ref|ZP_07290964.1| transcription factor WhiB [Streptomyces sp. C]
gi|302447517|gb|EFL19333.1| transcription factor WhiB [Streptomyces sp. C]
Length=100
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/44 (41%), Positives = 25/44 (57%), Gaps = 0/44 (0%)
Query 46 DDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVIPESGRARA 89
D +AK LC ACP R +C R A+ + G+W G+ E + RA
Sbjct 46 DAQAKRLCSACPVREVCLRHALRTQEPYGVWGGLTARERRKLRA 89
>gi|325674615|ref|ZP_08154302.1| transcription regulator WhiB [Rhodococcus equi ATCC 33707]
gi|325554201|gb|EGD23876.1| transcription regulator WhiB [Rhodococcus equi ATCC 33707]
Length=107
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query 35 TQDPDRW-TTTPDD--EAKTLCRACPRRWLCARDAVESAGAEGLWAGVVI 81
T DPD W + PDD +AK C CP R C A+E A G+W G ++
Sbjct 17 TGDPDLWFSPAPDDLEQAKRQCGGCPIRSRCLAGALERAEPWGVWGGEIL 66
>gi|326331935|ref|ZP_08198221.1| transcription factor WhiB [Nocardioidaceae bacterium Broad-1]
gi|325950248|gb|EGD42302.1| transcription factor WhiB [Nocardioidaceae bacterium Broad-1]
Length=101
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (49%), Gaps = 5/60 (8%)
Query 28 EVPLGVCTQDPDRW---TTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVIPES 84
E+P + +D D W T+ D AK LCR CP + C + A+ G+W G V E
Sbjct 5 ELPCAI--EDGDLWFAATSADADRAKELCRTCPLQRSCLQGAIARQEPHGVWGGEVFYEG 62
>gi|326383315|ref|ZP_08205003.1| transcriptional regulatory protein Whib-like WhiB7 [Gordonia
neofelifaecis NRRL B-59395]
gi|326198065|gb|EGD55251.1| transcriptional regulatory protein Whib-like WhiB7 [Gordonia
neofelifaecis NRRL B-59395]
Length=88
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/58 (35%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query 27 YEVPLGVCTQDPDRW-TTTPD--DEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVI 81
E+P D D W P+ +EAK+LC+ACP + C A+E G+W G +
Sbjct 9 IELPCQTTENDADLWFADQPNLLEEAKSLCQACPLQVQCLESAMEREEPWGVWGGEIF 66
>gi|339782877|gb|AEK08597.1| gp53 [Mycobacterium phage DLane]
Length=133
Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/77 (32%), Positives = 36/77 (47%), Gaps = 7/77 (9%)
Query 33 VCTQ-DPDRWTTTP---DDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVIPESGRAR 88
+CTQ DP+ W +D+AK C CP + C A+E+ G+W G E R
Sbjct 22 ICTQVDPEAWFPEKGIRNDDAKETCWKCPAQARCLEYALENNEVWGIWGGFTEKER---R 78
Query 89 AFALGQLRSLAERNGYP 105
A G++ + +R P
Sbjct 79 AIRRGEMTPVNQRKMMP 95
>gi|291084908|ref|YP_003495191.1| gp50 [Mycobacterium phage Ardmore]
gi|262262744|gb|ACY39932.1| gp50 [Mycobacterium phage Ardmore]
Length=133
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/77 (32%), Positives = 36/77 (47%), Gaps = 7/77 (9%)
Query 33 VCTQ-DPDRWTTTP---DDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVIPESGRAR 88
+CTQ DP+ W +D+AK C CP + C A+E+ G+W G E R
Sbjct 22 ICTQIDPEAWFPEKGIRNDDAKETCWKCPVQARCLEYALENNEGWGIWGGFTEKER---R 78
Query 89 AFALGQLRSLAERNGYP 105
A G++ + +R P
Sbjct 79 AIRRGEMTPVNQRKMMP 95
>gi|238060917|ref|ZP_04605626.1| transcription factor WhiB [Micromonospora sp. ATCC 39149]
gi|237882728|gb|EEP71556.1| transcription factor WhiB [Micromonospora sp. ATCC 39149]
Length=121
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/67 (38%), Positives = 33/67 (50%), Gaps = 7/67 (10%)
Query 19 VDMTVTALYEVPLGVCTQ-DPDRWTTTPDDE---AKTLCRACPRRWLCARDAVESAGAEG 74
VD++V +P C + DPD W + E AK+LC CP R C AVE A G
Sbjct 8 VDLSVEMEANLP---CRKVDPDLWFSDSPTELELAKSLCGDCPLRVECLAGAVERAEPWG 64
Query 75 LWAGVVI 81
+W G +
Sbjct 65 VWGGEIF 71
>gi|206599934|ref|YP_002241740.1| gp55 [Mycobacterium phage Fruitloop]
gi|206287022|gb|ACI12368.1| gp55 [Mycobacterium phage Fruitloop]
Length=133
Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/77 (32%), Positives = 35/77 (46%), Gaps = 7/77 (9%)
Query 33 VCTQ-DPDRWTTTP---DDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVIPESGRAR 88
+CTQ DP+ W +D+AK C CP + C A+E G+W G E R
Sbjct 22 ICTQIDPEAWFPEKGIRNDDAKETCWKCPVQARCLEYALEHNEGWGIWGGFTEKER---R 78
Query 89 AFALGQLRSLAERNGYP 105
A G++ + +R P
Sbjct 79 AIRRGEMTPVNQRKMMP 95
>gi|302869872|ref|YP_003838509.1| transcription factor WhiB [Micromonospora aurantiaca ATCC 27029]
gi|315501334|ref|YP_004080221.1| transcription factor whib [Micromonospora sp. L5]
gi|302572731|gb|ADL48933.1| transcription factor WhiB [Micromonospora aurantiaca ATCC 27029]
gi|315407953|gb|ADU06070.1| transcription factor WhiB [Micromonospora sp. L5]
Length=127
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/66 (41%), Positives = 34/66 (52%), Gaps = 3/66 (4%)
Query 49 AKTLCRACPRRWLCARDAVESAGAEGLWAGVVIPESGRARAFALGQLRSLAERNGYPVRD 108
AK++CRACP R CA A+ G+W G ES R R ALG LA+R V
Sbjct 49 AKSVCRACPVRAECAAHALSVREPYGVWGG--FSESERLRLLALG-WEDLADRRQTKVDI 105
Query 109 HRVSAQ 114
R+ A+
Sbjct 106 ARLEAR 111
>gi|49146105|ref|YP_025543.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|42414739|emb|CAE46832.1| possible transcriptional regulatory protein [Mycobacterium ulcerans
Agy99]
Length=87
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/86 (30%), Positives = 41/86 (48%), Gaps = 5/86 (5%)
Query 21 MTVTALYEVPLGVCT-QDPDRWTT--TPDDEAKTLCRACPRRWLCARDAVESAGAEGLWA 77
MT ++ +G+C D D+W + + + +A +C CP CA A+ +G+W
Sbjct 1 MTAANPVKLGVGLCVYDDEDKWFSGYSSNRKAAAICANCPIIVSCAERALRLQVTDGVWV 60
Query 78 GVVIPESGRARAF--ALGQLRSLAER 101
VV+P S A A +LR + E
Sbjct 61 TVVMPGSRHTDALEQARARLRRVIEH 86
>gi|209418045|ref|YP_002274074.1| transcriptional regulatory protein [Mycobacterium liflandii 128FXT]
gi|209418066|ref|YP_002274095.1| transcriptional regulatory protein [Mycobacterium liflandii 128FXT]
gi|169409177|gb|ACA57583.1| transcriptional regulatory protein [Mycobacterium liflandii 128FXT]
gi|169409198|gb|ACA57604.1| transcriptional regulatory protein [Mycobacterium liflandii 128FXT]
Length=136
Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/85 (30%), Positives = 41/85 (49%), Gaps = 5/85 (5%)
Query 21 MTVTALYEVPLGVCT-QDPDRWTT--TPDDEAKTLCRACPRRWLCARDAVESAGAEGLWA 77
MT ++ +G+C D D+W + + + +A +C CP CA A+ +G+W
Sbjct 1 MTAANPVKLGVGLCVYDDEDKWFSGYSSNRKAAAICANCPIIVSCAERALRLQVTDGVWV 60
Query 78 GVVIPESGRARAF--ALGQLRSLAE 100
VV+P S A A +LR + E
Sbjct 61 TVVMPGSRHTDALEQARARLRRVIE 85
>gi|226362112|ref|YP_002779890.1| WhiB family regulatory protein [Rhodococcus opacus B4]
gi|226240597|dbj|BAH50945.1| putative WhiB family regulatory protein [Rhodococcus opacus B4]
Length=120
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/69 (29%), Positives = 32/69 (47%), Gaps = 4/69 (5%)
Query 46 DDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVIPESGRARAFALGQLRSLAERNGYP 105
+ +A+ LC+ CP R C R A+E G+W G+ + R F + R N P
Sbjct 49 ERQAQELCQGCPVRHECQRHALEVGEPYGVWGGLTESD----RRFGHDRARQHLPANSKP 104
Query 106 VRDHRVSAQ 114
+ R+S +
Sbjct 105 NKRLRISPR 113
>gi|134097689|ref|YP_001103350.1| WhiB-family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|291006351|ref|ZP_06564324.1| WhiB-family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
gi|133910312|emb|CAM00425.1| WhiB-family transcriptional regulator [Saccharopolyspora erythraea
NRRL 2338]
Length=129
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/79 (32%), Positives = 35/79 (45%), Gaps = 6/79 (7%)
Query 6 AAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRW-TTTPDD--EAKTLCRACPRRWLC 62
AEA A +D E+P C +DPD W +P + +AK+LC CP R C
Sbjct 11 GAEAQQGEAVGTLLDSAPALGAELP---CRRDPDLWFAESPGELEQAKSLCAECPIRAEC 67
Query 63 ARDAVESAGAEGLWAGVVI 81
A+ G+W G +
Sbjct 68 LAGALSRGEPWGVWGGEIF 86
>gi|160700717|ref|YP_001552397.1| gp68 [Mycobacterium phage Giles]
gi|159136667|gb|ABW88463.1| gp68 [Mycobacterium phage Giles]
Length=102
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 0/40 (0%)
Query 46 DDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVIPESG 85
+ EAK LC CP R C A ++ EG+W G+ + E G
Sbjct 58 ESEAKALCAQCPVRLECLEYANDNDEREGIWGGLTVTERG 97
>gi|320164042|gb|EFW40941.1| mitochondrial carrier protein [Capsaspora owczarzaki ATCC 30864]
Length=390
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/52 (37%), Positives = 23/52 (45%), Gaps = 0/52 (0%)
Query 30 PLGVCTQDPDRWTTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVI 81
PLGV Q + T P L A + W C R V G GL++GV I
Sbjct 88 PLGVQAQWSAKHTGEPSRPPAHLTSALRQTWACGRSIVAQEGVRGLYSGVGI 139
>gi|296169036|ref|ZP_06850698.1| transcription factor WhiB [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896295|gb|EFG75954.1| transcription factor WhiB [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=90
Score = 34.7 bits (78), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/92 (32%), Positives = 38/92 (42%), Gaps = 13/92 (14%)
Query 21 MTVTALYEVPLGVC-TQDPDRW-TTTPDD--EAKTLCRACPRRWLCARDAVESAGAEGLW 76
+TV+ P+ C DPD W P D AK LC CP R C A+E A G+W
Sbjct 4 LTVSRQPSSPVLPCHAGDPDLWFADIPADLERAKALCAGCPIRRQCLASALERAEPWGVW 63
Query 77 AGVVIPESGRARAFALGQLRSLAERNGYPVRD 108
G ++ G + S G P +D
Sbjct 64 GGEILDR---------GSILSFKRPRGRPRKD 86
>gi|334336361|ref|YP_004541513.1| transcription factor WhiB [Isoptericola variabilis 225]
gi|334106729|gb|AEG43619.1| transcription factor WhiB [Isoptericola variabilis 225]
Length=123
Score = 34.7 bits (78), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query 35 TQDPDRW---TTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVI 81
T DP+ W T +EAK LCR CP + C A+E G+W G V
Sbjct 51 TNDPELWFAEHTAQVEEAKALCRTCPLQAGCLAGALERREPWGVWGGEVF 100
>gi|333029084|ref|ZP_08457147.1| putative transcription factor WhiB [Streptomyces sp. Tu6071]
gi|332742292|gb|EGJ72734.1| putative transcription factor WhiB [Streptomyces sp. Tu6071]
Length=67
Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/37 (41%), Positives = 22/37 (60%), Gaps = 0/37 (0%)
Query 47 DEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVIPE 83
+EAK +C CP R LC A++S +G+W G+ E
Sbjct 12 EEAKKICTGCPVRALCLEFALDSRQQDGVWGGISAEE 48
>gi|329937704|ref|ZP_08287223.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus
M045]
gi|329303103|gb|EGG46991.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus
M045]
Length=87
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/54 (39%), Positives = 29/54 (54%), Gaps = 8/54 (14%)
Query 35 TQDPDRW----TTTPD----DEAKTLCRACPRRWLCARDAVESAGAEGLWAGVV 80
T+DPD + TT P +EAK++CR CP R C A+E+ G+W G
Sbjct 12 TEDPDLFFPVGTTGPALLQIEEAKSICRGCPVREQCLEWALETGQDIGVWGGTT 65
Lambda K H
0.321 0.131 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130541267802
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40