BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3863
Length=392
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610999|ref|NP_218380.1| hypothetical protein Rv3863 [Mycoba... 771 0.0
gi|339300265|gb|AEJ52375.1| hypothetical protein CCDC5180_3538 [... 680 0.0
gi|339296668|gb|AEJ48779.1| hypothetical protein CCDC5079_3590 [... 581 8e-164
gi|308232594|ref|ZP_07416564.2| hypothetical alanine rich protei... 581 8e-164
gi|240168342|ref|ZP_04747001.1| putative regulatory protein [Myc... 444 1e-122
gi|183985409|ref|YP_001853700.1| putative regulatory protein [My... 432 6e-119
gi|289441304|ref|ZP_06431048.1| hypothetical alanine rich protei... 384 2e-104
gi|289441305|ref|ZP_06431049.1| hypothetical alanine rich protei... 287 2e-75
gi|120401096|ref|YP_950925.1| hypothetical protein Mvan_0068 [My... 251 1e-64
gi|145221372|ref|YP_001132050.1| hypothetical protein Mflv_0777 ... 245 1e-62
gi|108797039|ref|YP_637236.1| hypothetical protein Mmcs_0058 [My... 236 4e-60
gi|315441744|ref|YP_004074623.1| hypothetical protein Mspyr1_005... 235 8e-60
gi|126432661|ref|YP_001068352.1| hypothetical protein Mjls_0048 ... 231 1e-58
gi|118467671|ref|YP_884470.1| hypothetical protein MSMEG_0052 [M... 231 2e-58
gi|296164329|ref|ZP_06846913.1| FHA domain protein [Mycobacteriu... 225 1e-56
gi|315441491|ref|YP_004074368.1| hypothetical protein Mspyr1_536... 217 2e-54
gi|119854980|ref|YP_935585.1| XRE family transcriptional regulat... 175 1e-41
gi|296165690|ref|ZP_06848208.1| XRE family transcriptional regul... 170 5e-40
gi|209418063|ref|YP_002274092.1| forkhead-associated protein [My... 161 2e-37
gi|49146102|ref|YP_025540.1| forkhead-associated protein [Mycoba... 159 7e-37
gi|108797031|ref|YP_637228.1| FHA domain-containing protein [Myc... 128 2e-27
gi|126432653|ref|YP_001068344.1| FHA domain-containing protein [... 127 4e-27
gi|169628391|ref|YP_001702040.1| hypothetical protein MAB_1298c ... 109 7e-22
gi|118470189|ref|YP_890731.1| hypothetical protein MSMEG_6518 [M... 89.0 1e-15
gi|118468739|ref|YP_886011.1| forkhead-associated protein [Mycob... 73.2 8e-11
gi|296163993|ref|ZP_06846618.1| FHA domain protein [Mycobacteriu... 59.3 1e-06
gi|209418044|ref|YP_002274073.1| hypothetical protein MULP_007 [... 52.8 1e-04
gi|7476063|pir||T10041 hypothetical protein MLCB628.22c - Mycoba... 52.0 2e-04
gi|118471926|ref|YP_886019.1| ABC transporter ATP-binding protei... 52.0 2e-04
gi|108798172|ref|YP_638369.1| FHA domain-containing protein [Myc... 50.1 7e-04
gi|126433830|ref|YP_001069521.1| ABC transporter-like protein [M... 49.7 0.001
gi|336457706|gb|EGO36706.1| ABC-type multidrug transport system,... 48.5 0.002
gi|296164688|ref|ZP_06847254.1| ABC superfamily ATP binding cass... 48.1 0.002
gi|41407555|ref|NP_960391.1| hypothetical protein MAP1457 [Mycob... 48.1 0.002
gi|120402553|ref|YP_952382.1| ABC transporter--like protein [Myc... 48.1 0.003
gi|254775457|ref|ZP_05216973.1| ABC transporter, ATP-binding pro... 47.8 0.003
gi|118465124|ref|YP_882196.1| ABC transporter ATP-binding protei... 47.8 0.003
gi|342860792|ref|ZP_08717442.1| ABC transporter ATP-binding prot... 47.4 0.004
gi|145225458|ref|YP_001136136.1| ABC transporter-like protein [M... 47.4 0.005
gi|240172661|ref|ZP_04751320.1| transmembrane ATP-binding protei... 46.6 0.007
gi|254822556|ref|ZP_05227557.1| hypothetical protein MintA_21684... 46.6 0.008
gi|254820360|ref|ZP_05225361.1| hypothetical protein MintA_10546... 46.6 0.008
gi|254820993|ref|ZP_05225994.1| hypothetical protein MintA_13745... 45.4 0.017
gi|240169070|ref|ZP_04747729.1| transmembrane ATP-binding protei... 45.1 0.019
gi|183981196|ref|YP_001849487.1| transmembrane ATP-binding prote... 45.1 0.021
gi|269125959|ref|YP_003299329.1| XRE family transcriptional regu... 45.1 0.023
gi|41409563|ref|NP_962399.1| hypothetical protein MAP3465 [Mycob... 44.7 0.025
gi|118466082|ref|YP_883461.1| ABC transporter ATP-binding protei... 44.7 0.031
gi|296164507|ref|ZP_06847078.1| ABC superfamily ATP binding cass... 44.3 0.036
gi|240169069|ref|ZP_04747728.1| ABC transporter, ATP-binding pro... 44.3 0.040
>gi|15610999|ref|NP_218380.1| hypothetical protein Rv3863 [Mycobacterium tuberculosis H37Rv]
gi|15843495|ref|NP_338532.1| hypothetical protein MT3977 [Mycobacterium tuberculosis CDC1551]
gi|31795037|ref|NP_857530.1| hypothetical protein Mb3893 [Mycobacterium bovis AF2122/97]
51 more sequence titles
Length=392
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/392 (100%), Positives = 392/392 (100%), Gaps = 0/392 (0%)
Query 1 MAGERKVCPPSRLVPANKGSTQMSKAGSTVGPAPLVACSGGTSDVIEPRRGVAIIGHSCR 60
MAGERKVCPPSRLVPANKGSTQMSKAGSTVGPAPLVACSGGTSDVIEPRRGVAIIGHSCR
Sbjct 1 MAGERKVCPPSRLVPANKGSTQMSKAGSTVGPAPLVACSGGTSDVIEPRRGVAIIGHSCR 60
Query 61 VGTQIDDSRISQTHLRAVSDDGRWRIVGNIPRGMFVGGRRGSSVTVSDKTLIRFGDPPGG 120
VGTQIDDSRISQTHLRAVSDDGRWRIVGNIPRGMFVGGRRGSSVTVSDKTLIRFGDPPGG
Sbjct 61 VGTQIDDSRISQTHLRAVSDDGRWRIVGNIPRGMFVGGRRGSSVTVSDKTLIRFGDPPGG 120
Query 121 KALTFEVVRPSDSAAQHGRVQPSADLSDDPAHNAAPVAPDPGVVRAGAAAAARRRELDIS 180
KALTFEVVRPSDSAAQHGRVQPSADLSDDPAHNAAPVAPDPGVVRAGAAAAARRRELDIS
Sbjct 121 KALTFEVVRPSDSAAQHGRVQPSADLSDDPAHNAAPVAPDPGVVRAGAAAAARRRELDIS 180
Query 181 QRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQWPAGTIARIRRGEPTEPATNPD 240
QRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQWPAGTIARIRRGEPTEPATNPD
Sbjct 181 QRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQWPAGTIARIRRGEPTEPATNPD 240
Query 241 ASPGLRPADGPASLIAQAVTAAVDGCSLAIAALPATEDPEFTERAAPILADLRQLEAIAV 300
ASPGLRPADGPASLIAQAVTAAVDGCSLAIAALPATEDPEFTERAAPILADLRQLEAIAV
Sbjct 241 ASPGLRPADGPASLIAQAVTAAVDGCSLAIAALPATEDPEFTERAAPILADLRQLEAIAV 300
Query 301 QATRISRITPELIKALGAVRRHHDELMRLGATAPGATLAQRLYAARRRANLSTLETAQAA 360
QATRISRITPELIKALGAVRRHHDELMRLGATAPGATLAQRLYAARRRANLSTLETAQAA
Sbjct 301 QATRISRITPELIKALGAVRRHHDELMRLGATAPGATLAQRLYAARRRANLSTLETAQAA 360
Query 361 GVAEEMIVGAEAEEELPAEATEAIEALIRQIN 392
GVAEEMIVGAEAEEELPAEATEAIEALIRQIN
Sbjct 361 GVAEEMIVGAEAEEELPAEATEAIEALIRQIN 392
>gi|339300265|gb|AEJ52375.1| hypothetical protein CCDC5180_3538 [Mycobacterium tuberculosis
CCDC5180]
Length=348
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/348 (99%), Positives = 348/348 (100%), Gaps = 0/348 (0%)
Query 45 VIEPRRGVAIIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGNIPRGMFVGGRRGSSV 104
+IEPRRGVAIIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGNIPRGMFVGGRRGSSV
Sbjct 1 MIEPRRGVAIIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGNIPRGMFVGGRRGSSV 60
Query 105 TVSDKTLIRFGDPPGGKALTFEVVRPSDSAAQHGRVQPSADLSDDPAHNAAPVAPDPGVV 164
TVSDKTLIRFGDPPGGKALTFEVVRPSDSAAQHGRVQPSADLSDDPAHNAAPVAPDPGVV
Sbjct 61 TVSDKTLIRFGDPPGGKALTFEVVRPSDSAAQHGRVQPSADLSDDPAHNAAPVAPDPGVV 120
Query 165 RAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQWPAGTI 224
RAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQWPAGTI
Sbjct 121 RAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQWPAGTI 180
Query 225 ARIRRGEPTEPATNPDASPGLRPADGPASLIAQAVTAAVDGCSLAIAALPATEDPEFTER 284
ARIRRGEPTEPATNPDASPGLRPADGPASLIAQAVTAAVDGCSLAIAALPATEDPEFTER
Sbjct 181 ARIRRGEPTEPATNPDASPGLRPADGPASLIAQAVTAAVDGCSLAIAALPATEDPEFTER 240
Query 285 AAPILADLRQLEAIAVQATRISRITPELIKALGAVRRHHDELMRLGATAPGATLAQRLYA 344
AAPILADLRQLEAIAVQATRISRITPELIKALGAVRRHHDELMRLGATAPGATLAQRLYA
Sbjct 241 AAPILADLRQLEAIAVQATRISRITPELIKALGAVRRHHDELMRLGATAPGATLAQRLYA 300
Query 345 ARRRANLSTLETAQAAGVAEEMIVGAEAEEELPAEATEAIEALIRQIN 392
ARRRANLSTLETAQAAGVAEEMIVGAEAEEELPAEATEAIEALIRQIN
Sbjct 301 ARRRANLSTLETAQAAGVAEEMIVGAEAEEELPAEATEAIEALIRQIN 348
>gi|339296668|gb|AEJ48779.1| hypothetical protein CCDC5079_3590 [Mycobacterium tuberculosis
CCDC5079]
Length=469
Score = 581 bits (1497), Expect = 8e-164, Method: Compositional matrix adjust.
Identities = 293/293 (100%), Positives = 293/293 (100%), Gaps = 0/293 (0%)
Query 1 MAGERKVCPPSRLVPANKGSTQMSKAGSTVGPAPLVACSGGTSDVIEPRRGVAIIGHSCR 60
MAGERKVCPPSRLVPANKGSTQMSKAGSTVGPAPLVACSGGTSDVIEPRRGVAIIGHSCR
Sbjct 1 MAGERKVCPPSRLVPANKGSTQMSKAGSTVGPAPLVACSGGTSDVIEPRRGVAIIGHSCR 60
Query 61 VGTQIDDSRISQTHLRAVSDDGRWRIVGNIPRGMFVGGRRGSSVTVSDKTLIRFGDPPGG 120
VGTQIDDSRISQTHLRAVSDDGRWRIVGNIPRGMFVGGRRGSSVTVSDKTLIRFGDPPGG
Sbjct 61 VGTQIDDSRISQTHLRAVSDDGRWRIVGNIPRGMFVGGRRGSSVTVSDKTLIRFGDPPGG 120
Query 121 KALTFEVVRPSDSAAQHGRVQPSADLSDDPAHNAAPVAPDPGVVRAGAAAAARRRELDIS 180
KALTFEVVRPSDSAAQHGRVQPSADLSDDPAHNAAPVAPDPGVVRAGAAAAARRRELDIS
Sbjct 121 KALTFEVVRPSDSAAQHGRVQPSADLSDDPAHNAAPVAPDPGVVRAGAAAAARRRELDIS 180
Query 181 QRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQWPAGTIARIRRGEPTEPATNPD 240
QRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQWPAGTIARIRRGEPTEPATNPD
Sbjct 181 QRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQWPAGTIARIRRGEPTEPATNPD 240
Query 241 ASPGLRPADGPASLIAQAVTAAVDGCSLAIAALPATEDPEFTERAAPILADLR 293
ASPGLRPADGPASLIAQAVTAAVDGCSLAIAALPATEDPEFTERAAPILADLR
Sbjct 241 ASPGLRPADGPASLIAQAVTAAVDGCSLAIAALPATEDPEFTERAAPILADLR 293
>gi|308232594|ref|ZP_07416564.2| hypothetical alanine rich protein [Mycobacterium tuberculosis
SUMu001]
gi|308369261|ref|ZP_07417093.2| hypothetical alanine rich protein [Mycobacterium tuberculosis
SUMu002]
gi|308371483|ref|ZP_07425106.2| hypothetical alanine rich protein [Mycobacterium tuberculosis
SUMu003]
22 more sequence titles
Length=299
Score = 581 bits (1497), Expect = 8e-164, Method: Compositional matrix adjust.
Identities = 299/299 (100%), Positives = 299/299 (100%), Gaps = 0/299 (0%)
Query 94 MFVGGRRGSSVTVSDKTLIRFGDPPGGKALTFEVVRPSDSAAQHGRVQPSADLSDDPAHN 153
MFVGGRRGSSVTVSDKTLIRFGDPPGGKALTFEVVRPSDSAAQHGRVQPSADLSDDPAHN
Sbjct 1 MFVGGRRGSSVTVSDKTLIRFGDPPGGKALTFEVVRPSDSAAQHGRVQPSADLSDDPAHN 60
Query 154 AAPVAPDPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKL 213
AAPVAPDPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKL
Sbjct 61 AAPVAPDPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKL 120
Query 214 EEVLQWPAGTIARIRRGEPTEPATNPDASPGLRPADGPASLIAQAVTAAVDGCSLAIAAL 273
EEVLQWPAGTIARIRRGEPTEPATNPDASPGLRPADGPASLIAQAVTAAVDGCSLAIAAL
Sbjct 121 EEVLQWPAGTIARIRRGEPTEPATNPDASPGLRPADGPASLIAQAVTAAVDGCSLAIAAL 180
Query 274 PATEDPEFTERAAPILADLRQLEAIAVQATRISRITPELIKALGAVRRHHDELMRLGATA 333
PATEDPEFTERAAPILADLRQLEAIAVQATRISRITPELIKALGAVRRHHDELMRLGATA
Sbjct 181 PATEDPEFTERAAPILADLRQLEAIAVQATRISRITPELIKALGAVRRHHDELMRLGATA 240
Query 334 PGATLAQRLYAARRRANLSTLETAQAAGVAEEMIVGAEAEEELPAEATEAIEALIRQIN 392
PGATLAQRLYAARRRANLSTLETAQAAGVAEEMIVGAEAEEELPAEATEAIEALIRQIN
Sbjct 241 PGATLAQRLYAARRRANLSTLETAQAAGVAEEMIVGAEAEEELPAEATEAIEALIRQIN 299
>gi|240168342|ref|ZP_04747001.1| putative regulatory protein [Mycobacterium kansasii ATCC 12478]
Length=367
Score = 444 bits (1142), Expect = 1e-122, Method: Compositional matrix adjust.
Identities = 285/372 (77%), Positives = 304/372 (82%), Gaps = 7/372 (1%)
Query 23 MSKAGSTVGPAPLVACSGGTSDVIEPRRGVAIIGHSCRVGTQIDDSRISQTHLRAVSDDG 82
M A S VGPA L A SG S I P R V IG + R G QIDD +SQ HLRAVS+DG
Sbjct 1 MPNADSPVGPALLAAHSGEPSHAIAPDRDVVTIGRTPRAGVQIDDPDVSQAHLRAVSEDG 60
Query 83 RWRIVGNIPRGMFVGGRRGSSVTVSDKTLIRFGDPPGGKALTFEVVRPSDSAAQHGRVQP 142
WRI+G+ P GMFV GRR SVTVSDKT++RFGDP GGKALTFEVVRPS+S + R Q
Sbjct 61 PWRILGSSPSGMFVDGRRKGSVTVSDKTIVRFGDPTGGKALTFEVVRPSNSPEEQRREQR 120
Query 143 SADLSDDPAHNAAPVAPDPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGR 202
AD SD + PDPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGR
Sbjct 121 PADQSDGQSSE-----PDPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGR 175
Query 203 SWPRERTRAKLEEVLQWPAGTIARIRRGEPT-EPA-TNPDASPGLRPADGPASLIAQAVT 260
SWPRERTRAKLEEVLQWP GTIARIR+GEP +PA + +A PA+GPASLIAQAV
Sbjct 176 SWPRERTRAKLEEVLQWPPGTIARIRQGEPAGQPAISASEADAEAEPAEGPASLIAQAVA 235
Query 261 AAVDGCSLAIAALPATEDPEFTERAAPILADLRQLEAIAVQATRISRITPELIKALGAVR 320
AA+D CSLAIAALP EDPEFTERAAPILADLRQLEAIAVQATRISRITPELI+ALGAVR
Sbjct 236 AAIDTCSLAIAALPPPEDPEFTERAAPILADLRQLEAIAVQATRISRITPELIRALGAVR 295
Query 321 RHHDELMRLGATAPGATLAQRLYAARRRANLSTLETAQAAGVAEEMIVGAEAEEELPAEA 380
R+HD+LM LGATAPGATLAQRLYAARRRANLS ETAQAAGVAEEMIV AEAEE LPAEA
Sbjct 296 RYHDKLMTLGATAPGATLAQRLYAARRRANLSASETAQAAGVAEEMIVRAEAEEALPAEA 355
Query 381 TEAIEALIRQIN 392
EAIEALIRQIN
Sbjct 356 AEAIEALIRQIN 367
>gi|183985409|ref|YP_001853700.1| putative regulatory protein [Mycobacterium marinum M]
gi|183178735|gb|ACC43845.1| conserved hypothetical regulatory protein [Mycobacterium marinum
M]
Length=385
Score = 432 bits (1110), Expect = 6e-119, Method: Compositional matrix adjust.
Identities = 278/392 (71%), Positives = 306/392 (79%), Gaps = 9/392 (2%)
Query 1 MAGERKVCPPSRLVPANKGSTQMSKAGSTVGPAPLVACSGGTSDVIEPRRGVAIIGHSCR 60
++G R + P S V A++ ST M A ST PA VA G + ++ P G +G
Sbjct 3 VSGTRALPPAS--VAASEESTYMPDAESTARPALRVARGGDSPGLVTP--GHRPVGRGAL 58
Query 61 VGTQIDDSRISQTHLRAVSDDGRWRIVGNIPRGMFVGGRRGSSVTVSDKTLIRFGDPPGG 120
++DD +SQTH+RAVSD G+ RIV N P GMFV G R SSV VSDKT++RFGDP GG
Sbjct 59 TNARLDDPVLSQTHVRAVSDGGQRRIVTNSPNGMFVDGTRKSSVAVSDKTIVRFGDPTGG 118
Query 121 KALTFEVVRPSDSAAQHGRVQPSADLSDDPAHNAAPVAPDPGVVRAGAAAAARRRELDIS 180
KALTFEVVRPS+S + R Q A+ SD + A DPGVVRAGAAAAARRRELDIS
Sbjct 119 KALTFEVVRPSNSPEEDSREQRPAEQSDSQTNEA-----DPGVVRAGAAAAARRRELDIS 173
Query 181 QRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQWPAGTIARIRRGEPTEPATNPD 240
QRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQWPAGTIARIR+GE P P+
Sbjct 174 QRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQWPAGTIARIRQGESVAPEPAPE 233
Query 241 ASPGLRPADGPASLIAQAVTAAVDGCSLAIAALPATEDPEFTERAAPILADLRQLEAIAV 300
AS +DGPASLIAQAV AAVD CSLAIAALPA E+P+FTERAAPILADLRQLE IAV
Sbjct 234 ASVEAPTSDGPASLIAQAVAAAVDTCSLAIAALPAPEEPDFTERAAPILADLRQLEGIAV 293
Query 301 QATRISRITPELIKALGAVRRHHDELMRLGATAPGATLAQRLYAARRRANLSTLETAQAA 360
QATRISRITPELIKALGAVRR+HD+LM L ATAPGATLAQRLYAARRRANLST ETAQAA
Sbjct 294 QATRISRITPELIKALGAVRRYHDKLMTLSATAPGATLAQRLYAARRRANLSTSETAQAA 353
Query 361 GVAEEMIVGAEAEEELPAEATEAIEALIRQIN 392
GV EE+IV AEAEE L AEA EAIEALIRQIN
Sbjct 354 GVTEELIVRAEAEEALHAEAAEAIEALIRQIN 385
>gi|289441304|ref|ZP_06431048.1| hypothetical alanine rich protein [Mycobacterium tuberculosis
T46]
gi|289414223|gb|EFD11463.1| hypothetical alanine rich protein [Mycobacterium tuberculosis
T46]
Length=193
Score = 384 bits (985), Expect = 2e-104, Method: Compositional matrix adjust.
Identities = 192/193 (99%), Positives = 192/193 (99%), Gaps = 0/193 (0%)
Query 1 MAGERKVCPPSRLVPANKGSTQMSKAGSTVGPAPLVACSGGTSDVIEPRRGVAIIGHSCR 60
MAGERKVCPPSRLVPANKGSTQMSKAGSTVGPAPLVACSGGTSDVIEPRRGVAIIGHSCR
Sbjct 1 MAGERKVCPPSRLVPANKGSTQMSKAGSTVGPAPLVACSGGTSDVIEPRRGVAIIGHSCR 60
Query 61 VGTQIDDSRISQTHLRAVSDDGRWRIVGNIPRGMFVGGRRGSSVTVSDKTLIRFGDPPGG 120
VGTQIDDSRISQTHLRAVSDDGRWRIVGNIPRGMFVGGRRGSSVTVSDKTLIRFGDPPGG
Sbjct 61 VGTQIDDSRISQTHLRAVSDDGRWRIVGNIPRGMFVGGRRGSSVTVSDKTLIRFGDPPGG 120
Query 121 KALTFEVVRPSDSAAQHGRVQPSADLSDDPAHNAAPVAPDPGVVRAGAAAAARRRELDIS 180
KALTFEVVRPSDSAAQHGRVQPSADLSDDPAHNAAPVAPDPGVVRAGAAAAARRRELDIS
Sbjct 121 KALTFEVVRPSDSAAQHGRVQPSADLSDDPAHNAAPVAPDPGVVRAGAAAAARRRELDIS 180
Query 181 QRSLAADGIINAG 193
QRSL ADGIINAG
Sbjct 181 QRSLRADGIINAG 193
>gi|289441305|ref|ZP_06431049.1| hypothetical alanine rich protein [Mycobacterium tuberculosis
T46]
gi|289414224|gb|EFD11464.1| hypothetical alanine rich protein [Mycobacterium tuberculosis
T46]
Length=151
Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/151 (100%), Positives = 151/151 (100%), Gaps = 0/151 (0%)
Query 242 SPGLRPADGPASLIAQAVTAAVDGCSLAIAALPATEDPEFTERAAPILADLRQLEAIAVQ 301
SPGLRPADGPASLIAQAVTAAVDGCSLAIAALPATEDPEFTERAAPILADLRQLEAIAVQ
Sbjct 1 SPGLRPADGPASLIAQAVTAAVDGCSLAIAALPATEDPEFTERAAPILADLRQLEAIAVQ 60
Query 302 ATRISRITPELIKALGAVRRHHDELMRLGATAPGATLAQRLYAARRRANLSTLETAQAAG 361
ATRISRITPELIKALGAVRRHHDELMRLGATAPGATLAQRLYAARRRANLSTLETAQAAG
Sbjct 61 ATRISRITPELIKALGAVRRHHDELMRLGATAPGATLAQRLYAARRRANLSTLETAQAAG 120
Query 362 VAEEMIVGAEAEEELPAEATEAIEALIRQIN 392
VAEEMIVGAEAEEELPAEATEAIEALIRQIN
Sbjct 121 VAEEMIVGAEAEEELPAEATEAIEALIRQIN 151
>gi|120401096|ref|YP_950925.1| hypothetical protein Mvan_0068 [Mycobacterium vanbaalenii PYR-1]
gi|119953914|gb|ABM10919.1| conserved hypothetical alanine rich protein [Mycobacterium vanbaalenii
PYR-1]
Length=246
Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 161/245 (66%), Positives = 180/245 (74%), Gaps = 8/245 (3%)
Query 153 NAAPV-----APDPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRE 207
NA PV APDPG+VRAGAAAAARRRELDISQRSLAA+GIINAGALIAFEKGRSWPRE
Sbjct 3 NAEPVDQSTGAPDPGMVRAGAAAAARRRELDISQRSLAAEGIINAGALIAFEKGRSWPRE 62
Query 208 RTRAKLEEVLQWPAGTIARIRRGEPTEPATNPDASPGLRPA-DGPASLIAQAVTAAVDGC 266
RTRA+LEE+LQWP GTIAR+RRGEP A P S PA + SLIAQAVT AV
Sbjct 63 RTRARLEEILQWPPGTIARLRRGEPLRAAPPPPESRA--PASNDEVSLIAQAVTTAVSAF 120
Query 267 SLAIAALPATEDPEFTERAAPILADLRQLEAIAVQATRISRITPELIKALGAVRRHHDEL 326
+AALP +D F R ILADLRQL+A+A +A RI R+TP LIKAL AVR +D+L
Sbjct 121 GSTVAALPPVDDAAFVPRVTAILADLRQLDAVASRAARIGRVTPALIKALSAVRGLYDDL 180
Query 327 MRLGATAPGATLAQRLYAARRRANLSTLETAQAAGVAEEMIVGAEAEEELPAEATEAIEA 386
M A AP ATL QRLYAARR ANL+ LETAQAAGV+E+ + AEA+E L AIE
Sbjct 181 MVRAARAPHATLGQRLYAARRGANLTVLETAQAAGVSEDAVQQAEADEPLSPADIAAIET 240
Query 387 LIRQI 391
LI QI
Sbjct 241 LISQI 245
>gi|145221372|ref|YP_001132050.1| hypothetical protein Mflv_0777 [Mycobacterium gilvum PYR-GCK]
gi|145213858|gb|ABP43262.1| conserved hypothetical alanine rich protein [Mycobacterium gilvum
PYR-GCK]
Length=245
Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 156/245 (64%), Positives = 176/245 (72%), Gaps = 9/245 (3%)
Query 153 NAAPV-----APDPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRE 207
NA P+ APDPG+ RAGAAAAARRREL+ISQRSLAA GIINAGALIAFEKGRSWPRE
Sbjct 3 NAEPIDESIGAPDPGMARAGAAAAARRRELNISQRSLAAGGIINAGALIAFEKGRSWPRE 62
Query 208 RTRAKLEEVLQWPAGTIARIRRGEPTEPATNPDASPGLRPADG-PASLIAQAVTAAVDGC 266
RTRA+LEE+LQWP GTIA +RRGEP PA P+A P PA G SLIAQAV AV
Sbjct 63 RTRARLEEILQWPPGTIAALRRGEPVHPAPTPEARP---PASGDEVSLIAQAVITAVHAF 119
Query 267 SLAIAALPATEDPEFTERAAPILADLRQLEAIAVQATRISRITPELIKALGAVRRHHDEL 326
I++LP +D F R ILADLRQLEA+A +A RI R+TP LIKAL VR +D+L
Sbjct 120 GSTISSLPPADDAAFIPRVTAILADLRQLEAVAARAARIGRVTPALIKALSTVRGLYDDL 179
Query 327 MRLGATAPGATLAQRLYAARRRANLSTLETAQAAGVAEEMIVGAEAEEELPAEATEAIEA 386
M A AP A L RLYAARR ANL+ LETAQAAGV+E I AEA E + A +AIE
Sbjct 180 MLRAAGAPQAGLGHRLYAARRGANLTVLETAQAAGVSERAIEQAEAGEPVTASEADAIET 239
Query 387 LIRQI 391
L+ QI
Sbjct 240 LVGQI 244
>gi|108797039|ref|YP_637236.1| hypothetical protein Mmcs_0058 [Mycobacterium sp. MCS]
gi|119866124|ref|YP_936076.1| hypothetical protein Mkms_0067 [Mycobacterium sp. KMS]
gi|108767458|gb|ABG06180.1| conserved hypothetical alanine rich protein [Mycobacterium sp.
MCS]
gi|119692213|gb|ABL89286.1| conserved hypothetical alanine rich protein [Mycobacterium sp.
KMS]
Length=243
Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 150/215 (70%), Positives = 163/215 (76%), Gaps = 6/215 (2%)
Query 160 DPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQW 219
DPGV RAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVL+W
Sbjct 15 DPGVARAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLRW 74
Query 220 PAGTIARIRRGEPTEPATNPDASPGLRPADG-PASLIAQAVTAAVDGCSLAIAALPATED 278
P GTIA++RRGEPT A+ ADG A LIAQAV AAV LPA +D
Sbjct 75 PTGTIAKLRRGEPTAAVPAVPAA-----ADGAEAPLIAQAVEAAVHTLGATADVLPALDD 129
Query 279 PEFTERAAPILADLRQLEAIAVQATRISRITPELIKALGAVRRHHDELMRLGATAPGATL 338
EFT R IL+DLRQLEA+A +A RI ++TP LIKAL AVR DEL L ATAP ATL
Sbjct 130 REFTPRVTTILSDLRQLEAVAARAARIGKVTPALIKALSAVRGRIDELTMLAATAPNATL 189
Query 339 AQRLYAARRRANLSTLETAQAAGVAEEMIVGAEAE 373
QRLYA RRRANL+ ETAQAAGV ++ I GAEAE
Sbjct 190 GQRLYAVRRRANLTISETAQAAGVPDDDIAGAEAE 224
>gi|315441744|ref|YP_004074623.1| hypothetical protein Mspyr1_00540 [Mycobacterium sp. Spyr1]
gi|315260047|gb|ADT96788.1| hypothetical protein Mspyr1_00540 [Mycobacterium sp. Spyr1]
Length=244
Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 152/245 (63%), Positives = 176/245 (72%), Gaps = 10/245 (4%)
Query 153 NAAPV-----APDPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRE 207
NA P+ APDPG+ RAGAAAAARRREL+ISQRSLAA+GIINAGALIAFEKGRSWPRE
Sbjct 3 NAEPIDESIGAPDPGMARAGAAAAARRRELNISQRSLAAEGIINAGALIAFEKGRSWPRE 62
Query 208 RTRAKLEEVLQWPAGTIARIRRGEPTEPATNPDASPGLRPADG-PASLIAQAVTAAVDGC 266
RTRA+LE++LQWP GTIA +RRGEP + A P+ P PA+G SLIAQAV AV
Sbjct 63 RTRARLEDILQWPPGTIAALRRGEPAK-APAPEVRP---PANGDEVSLIAQAVITAVHAF 118
Query 267 SLAIAALPATEDPEFTERAAPILADLRQLEAIAVQATRISRITPELIKALGAVRRHHDEL 326
I+ LP +D F R IL+DLRQLEA+A +A RI R+TP LIKAL VR +D+L
Sbjct 119 GSTISTLPPADDAAFIPRVTAILSDLRQLEAVAARAARIGRVTPALIKALSTVRSLYDDL 178
Query 327 MRLGATAPGATLAQRLYAARRRANLSTLETAQAAGVAEEMIVGAEAEEELPAEATEAIEA 386
M A AP A L RLYAARR ANL+ LETAQAAGV+E I AEA E + A +AIE
Sbjct 179 MLRAAGAPQAGLGHRLYAARRGANLTVLETAQAAGVSERAIEQAEAGEPVTASEADAIET 238
Query 387 LIRQI 391
L+ QI
Sbjct 239 LVGQI 243
>gi|126432661|ref|YP_001068352.1| hypothetical protein Mjls_0048 [Mycobacterium sp. JLS]
gi|126232461|gb|ABN95861.1| conserved hypothetical alanine rich protein [Mycobacterium sp.
JLS]
Length=243
Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 150/215 (70%), Positives = 163/215 (76%), Gaps = 6/215 (2%)
Query 160 DPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQW 219
DPGV RAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVL+W
Sbjct 15 DPGVARAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLRW 74
Query 220 PAGTIARIRRGEPTEPATNPDASPGLRPADG-PASLIAQAVTAAVDGCSLAIAALPATED 278
P GTIA++RRGEPT A+ ADG A LIAQAV AAV LPA +D
Sbjct 75 PTGTIAKLRRGEPTATVPAVPAA-----ADGAEAPLIAQAVEAAVHTLGATADVLPALDD 129
Query 279 PEFTERAAPILADLRQLEAIAVQATRISRITPELIKALGAVRRHHDELMRLGATAPGATL 338
EFT R IL+DLRQLEA+A +A RI ++TP LIKAL AVR DEL L ATAP ATL
Sbjct 130 REFTPRVTTILSDLRQLEAVAARAARIGKVTPALIKALSAVRGRIDELTMLAATAPNATL 189
Query 339 AQRLYAARRRANLSTLETAQAAGVAEEMIVGAEAE 373
QRLYA RRRANL+ ETAQAAGV ++ I GAEAE
Sbjct 190 GQRLYAVRRRANLTISETAQAAGVPDDDIAGAEAE 224
>gi|118467671|ref|YP_884470.1| hypothetical protein MSMEG_0052 [Mycobacterium smegmatis str.
MC2 155]
gi|118168958|gb|ABK69854.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=259
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 151/243 (63%), Positives = 167/243 (69%), Gaps = 15/243 (6%)
Query 160 DPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQW 219
D G+VRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTR KLEEVL+W
Sbjct 14 DVGLVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRLKLEEVLRW 73
Query 220 PAGTIARIRRGEPTEPATNPDASPGLR--------------PADGPASLIAQAVTAAVDG 265
P GTIAR+R+G P T+ +P PA LIAQAV AV
Sbjct 74 PPGTIARLRQGGSV-PTTSAPVAPPPPPEPPAAAPAPVTSVPAADEVPLIAQAVLTAVHT 132
Query 266 CSLAIAALPATEDPEFTERAAPILADLRQLEAIAVQATRISRITPELIKALGAVRRHHDE 325
I A+P DP+F R IL DLRQLEA+A +A RIS +TP LIKAL AVRR DE
Sbjct 133 LETTINAMPPESDPDFVPRVTAILGDLRQLEAVASRAARISMVTPPLIKALSAVRRQIDE 192
Query 326 LMRLGATAPGATLAQRLYAARRRANLSTLETAQAAGVAEEMIVGAEAEEELPAEATEAIE 385
L A APGATL QRLYAARR+ANL+ ETAQAAGV+E+ I EAE + A A AIE
Sbjct 193 LTMRAANAPGATLGQRLYAARRQANLTVAETAQAAGVSEDAIARTEAEYPVDAAAVHAIE 252
Query 386 ALI 388
ALI
Sbjct 253 ALI 255
>gi|296164329|ref|ZP_06846913.1| FHA domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295900311|gb|EFG79733.1| FHA domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=350
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 149/364 (41%), Positives = 195/364 (54%), Gaps = 39/364 (10%)
Query 52 VAIIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGNIPRGMFVGGRRGSSVTVSDKTL 111
+AIIG ++DD R+S+ H+R WR G+FV G R SSV +S T
Sbjct 1 MAIIGRDSAATVEVDDERVSRQHVRLEPRREGWRAFDTSTNGIFVDGIRRSSVLISGATT 60
Query 112 IRFGDPPG-GKALT------------FEVVRPSDSAAQHGRVQPSADLSDDPAHNAAPVA 158
+ G P G LT +V+RP D + S
Sbjct 61 VYLGAPDGVAVGLTPQHRSQVPPEESTQVMRPFDGEGEQWWDNES--------------- 105
Query 159 PDPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQ 218
DPGV+RAG+A A RR++L ISQRSL DGIINAGALI FEKGRSWPR T KLE+VL
Sbjct 106 -DPGVIRAGSAVAERRQQLGISQRSLDRDGIINAGALIKFEKGRSWPRRSTLEKLEKVLD 164
Query 219 WPAGTIARIRRGEPTEPATNPDASPGLRPADGPAS----------LIAQAVTAAVDGCSL 268
WP G I RIRRG P + + + PA A+ L+A+ V A+
Sbjct 165 WPTGHITRIRRGAAPAPTSGAIQTGPVAPAGEEATEVFTDSVQAPLMAETVELAMHTLLT 224
Query 269 AIAALPATEDPEFTERAAPILADLRQLEAIAVQATRISRITPELIKALGAVRRHHDELMR 328
AI+ LP DP+F+ +A LADLR+LE +A A R ++ +P +I AL +VRR +++LM
Sbjct 225 AISELPEPTDPDFSPKATKTLADLRKLERLASSAARNAKGSPSVILALSSVRRSYNDLMM 284
Query 329 LGATAPGATLAQRLYAARRRANLSTLETAQAAGVAEEMIVGAEAEEELPAEATEAIEALI 388
A +P ATL QRLY AR RA LS E A AG+ ++ AEAE + EA AI+ LI
Sbjct 285 RAARSPAATLGQRLYGARHRAELSLQEAANGAGLPVSVLEDAEAERPIAPEAARAIDNLI 344
Query 389 RQIN 392
Q++
Sbjct 345 GQLS 348
>gi|315441491|ref|YP_004074368.1| hypothetical protein Mspyr1_53620 [Mycobacterium sp. Spyr1]
gi|315265146|gb|ADU01887.1| hypothetical protein Mspyr1_53620 [Mycobacterium sp. Spyr1]
Length=258
Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/239 (55%), Positives = 160/239 (67%), Gaps = 7/239 (2%)
Query 158 APDPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVL 217
APDPG+ RAGA AARRREL ISQR LA +GIINA ALI FEKGR+WPRERTR LEE+L
Sbjct 20 APDPGIARAGATVAARRRELGISQRQLAREGIINATALIRFEKGRTWPRERTRHVLEEIL 79
Query 218 QWPAGTIARIRRGEPTEPATNPDASPGLRPADGP--ASLIAQAVTAAVDGCSLAIAALPA 275
QWPAGTIARIR GEP E ++ ADG ASL+A AV A+ AIA LP
Sbjct 80 QWPAGTIARIRDGEPAEAFMGTGSADS---ADGEFLASLVADAVQPALIRFDQAIADLPP 136
Query 276 TEDPEFTERAAPILADLRQLEAIAVQATRISRITP-ELIKALGAVRRHHDELMRLGATAP 334
+ PEF + A+ ILADLR+LE I +A R SR + E++KALG +RR +DELM + P
Sbjct 137 ADAPEFVDHASVILADLRKLEQIGARAVRHSRGSAVEVVKALGVIRRRYDELMLRTSEHP 196
Query 335 GATLAQRLYAARRRANLSTLETAQAAGVAEEMIVGAEAEEEL-PAEATEAIEALIRQIN 392
ATL QRLYAAR R NL+ E A +G+ +E++V E + AE IEALI+ ++
Sbjct 197 AATLGQRLYAARHRTNLTASEVAAISGLPDELVVAVENGAAVDDAEKAARIEALIQDLD 255
>gi|119854980|ref|YP_935585.1| XRE family transcriptional regulator [Mycobacterium sp. KMS]
gi|119697698|gb|ABL94770.1| putative transcriptional regulator, XRE family [Mycobacterium
sp. KMS]
Length=274
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/235 (52%), Positives = 152/235 (65%), Gaps = 10/235 (4%)
Query 160 DPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQW 219
D G+ RAGAA AARRREL ISQR LA +I A ALI FEKGRSWPRERTR LEE+LQW
Sbjct 44 DDGIARAGAAVAARRRELGISQRELARQRVITAPALIHFEKGRSWPRERTRHTLEELLQW 103
Query 220 PAGTIARIRRGEPTEPATNPDASPGLRPADGP--ASLIAQAVTAAVDGCSLAIAALPATE 277
PAGTIARIR G + P P DG A+L+ A+ A+ + AI LP
Sbjct 104 PAGTIARIRAGGTADEVAAP-------PPDGSENAALVVDALKLALARFATAIDDLPPAS 156
Query 278 DPEFTERAAPILADLRQLEAIAVQATRISRITP-ELIKALGAVRRHHDELMRLGATAPGA 336
P+F RA+ ILADLR+LEA+A +A R S+ +P E++K+LG +R +D+LM A P A
Sbjct 157 SPDFANRASTILADLRKLEALAARAMRHSQGSPAEVVKSLGLIRGRYDDLMLKTAAHPDA 216
Query 337 TLAQRLYAARRRANLSTLETAQAAGVAEEMIVGAEAEEELPAEATEAIEALIRQI 391
+ QRLYAARRRANLS E A G++ E++ AEA + L + +EALI ++
Sbjct 217 SSGQRLYAARRRANLSAGEAAAVGGLSAELVETAEAGKPLDPPSAARVEALIAEL 271
>gi|296165690|ref|ZP_06848208.1| XRE family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898954|gb|EFG78442.1| XRE family transcriptional regulator [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=239
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 104/217 (48%), Positives = 131/217 (61%), Gaps = 3/217 (1%)
Query 176 ELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQWPAGTIARIRRGEPTEP 235
EL ISQR LA GII A LIAFEKGRSWPRERTRAKLE V+ WP GT+ ++
Sbjct 23 ELGISQRQLAKQGIIGAPNLIAFEKGRSWPRERTRAKLERVVDWPPGTLTKLY--ADGAH 80
Query 236 ATNPDASPGLRPADGPASLIAQAVTAAVDGCSLAIAALPATEDPEFTERAAPILADLRQL 295
+ PG +D P S+I AVT AVD + LP DP F ER +LADLR L
Sbjct 81 IVSGAIEPGRSDSD-PTSVITDAVTVAVDQVLASADGLPDDADPSFGERVRRVLADLRTL 139
Query 296 EAIAVQATRISRITPELIKALGAVRRHHDELMRLGATAPGATLAQRLYAARRRANLSTLE 355
EA+ +A R S+ +PE+IKAL +R+ + +LM A APGATL QRLY AR A LS E
Sbjct 140 EAVTARAVRSSQGSPEVIKALRRIRQQYSDLMVRAAAAPGATLGQRLYTARTAAALSVSE 199
Query 356 TAQAAGVAEEMIVGAEAEEELPAEATEAIEALIRQIN 392
A A + E++V AE+E+ + + IE LI ++
Sbjct 200 AAGALDLTPEVVVAAESEQPVTEDDQRRIEKLIAELT 236
>gi|209418063|ref|YP_002274092.1| forkhead-associated protein [Mycobacterium liflandii 128FXT]
gi|169245970|gb|ACA50991.1| forkhead-associated protein [Mycobacterium marinum DL240490]
gi|169409195|gb|ACA57601.1| forkhead-associated protein [Mycobacterium liflandii 128FXT]
Length=362
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/373 (34%), Positives = 179/373 (48%), Gaps = 21/373 (5%)
Query 21 TQMSKAGSTVGPAPLVACSGGTSDVIEPRRGVAIIGHSCRVGTQIDDSRISQTHLRAVSD 80
T+ + ++ P LV + + +G +IG +I D RIS+TH+R
Sbjct 5 TEHTTPMDSLAPPALVIKTPHQAFTAHAAQGPVVIGRDAPAQVRIPDERISRTHVRVTYT 64
Query 81 DGRWRIVGNIPRGMFVGGRRGSSVTVSDKTLIRFGDPPGGKALTFEVVRPSDSAAQHGRV 140
W V G FV G + +++ ++D I G P G A++F
Sbjct 65 STGWVAVDMSSNGTFVNGVQQATIPITDGLTIHLGHPLEGIAISFSYTN----------- 113
Query 141 QPSADLSDDPAHNAAPVAPDPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEK 200
+ L+ D A DP +VR GA AARR EL + +R L G++ + EK
Sbjct 114 --APPLAVDDATEHIEDTSDPKMVRVGAEIAARREELGLPKRELDRRGVVGQATMTDIEK 171
Query 201 GRSWPRERTRAKLEEVLQWPAGTIARIRRG--EPTEPATNPDASPGLRPADGPASLIAQA 258
GR +PR TR K+E VL WP G I + +P E T+ + A P I A
Sbjct 172 GRRFPRPFTRDKIEAVLGWPRGHIMWLYEQDIQPDEERTH------VLTATTPVPEITGA 225
Query 259 VTAAVDGCSLAIAALPATEDPEFTERAAPILADLRQLEAIAVQATRISRITPELIKALGA 318
A+ G + A +LP +DP FT+R +LADLR+LE +A AT + T L
Sbjct 226 TKMALKGFTAAADSLPPEDDPAFTDRVGALLADLRELEGVAASATHSAHGTSAAALVLSD 285
Query 319 VRRHHDELMRLGATAPGATLAQRLYAARRRANLSTLETAQAAGVAEEMIVGAEAEEELPA 378
VR+ + LM A APGATL QR YAAR RA L+T + A AAG+ +I AEA+ L
Sbjct 286 VRKLYKALMLRAAGAPGATLGQRFYAARYRAELTTQDAAAAAGLPVAIIEAAEADAPLDP 345
Query 379 EATEAIEALIRQI 391
AT A++AL+ +
Sbjct 346 AATAAVQALLTSL 358
>gi|49146102|ref|YP_025540.1| forkhead-associated protein [Mycobacterium ulcerans Agy99]
gi|42414736|emb|CAE46829.1| probable forkhead-associated protein [Mycobacterium ulcerans
Agy99]
Length=362
Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 125/373 (34%), Positives = 179/373 (48%), Gaps = 21/373 (5%)
Query 21 TQMSKAGSTVGPAPLVACSGGTSDVIEPRRGVAIIGHSCRVGTQIDDSRISQTHLRAVSD 80
T+ + ++ P LV + + +G +IG +I D RIS+ H+R
Sbjct 5 TEHTTPMDSLAPPALVIKTPHQAFTAHAAQGPVVIGRDAPAQVRIPDERISRAHVRVTYT 64
Query 81 DGRWRIVGNIPRGMFVGGRRGSSVTVSDKTLIRFGDPPGGKALTFEVVRPSDSAAQHGRV 140
W V G FV G + +++ ++D I G P G A++F +
Sbjct 65 STGWVAVDMSSNGTFVNGVQQATIPITDGLTIHLGHPLEGIAISFSYT-----------I 113
Query 141 QPSADLSDDPAHNAAPVAPDPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEK 200
P + D H DP +VR GA AARR EL + +R L G++ + EK
Sbjct 114 APPLAVDDATEHIED--TSDPKMVRVGAEIAARREELGLPKRELDRRGVVGQATMTDIEK 171
Query 201 GRSWPRERTRAKLEEVLQWPAGTIARIRRG--EPTEPATNPDASPGLRPADGPASLIAQA 258
GR +PR TR K+E VL WP G I + +P E T+ + A P I A
Sbjct 172 GRRFPRPFTRDKIEAVLGWPRGHIMWLYEQDIQPDEERTH------VLTATTPVPEITGA 225
Query 259 VTAAVDGCSLAIAALPATEDPEFTERAAPILADLRQLEAIAVQATRISRITPELIKALGA 318
A+ G + A +LP +DP FT+R +LADLR+LE++A AT + T L
Sbjct 226 TKMALKGFTAAADSLPPEDDPAFTDRVGALLADLRELESVAASATHSAHGTSAAALVLSD 285
Query 319 VRRHHDELMRLGATAPGATLAQRLYAARRRANLSTLETAQAAGVAEEMIVGAEAEEELPA 378
VR+ + LM A APGATL QR YAAR RA L+T + A AAG+ +I AEA+ L
Sbjct 286 VRKLYKALMLRAAGAPGATLGQRFYAARYRAELTTQDAAAAAGLPVAIIEAAEADAPLDP 345
Query 379 EATEAIEALIRQI 391
AT A++AL+ +
Sbjct 346 AATAAVQALLTSL 358
>gi|108797031|ref|YP_637228.1| FHA domain-containing protein [Mycobacterium sp. MCS]
gi|119866116|ref|YP_936068.1| FHA domain-containing protein [Mycobacterium sp. KMS]
gi|108767450|gb|ABG06172.1| FHA domain containing protein [Mycobacterium sp. MCS]
gi|119692205|gb|ABL89278.1| FHA domain containing protein [Mycobacterium sp. KMS]
Length=343
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/357 (32%), Positives = 158/357 (45%), Gaps = 52/357 (14%)
Query 26 AGSTVGPAPLVACSGGTSDVIEPRRGVAIIGHSCRVGTQIDDSRISQTHLRAVSDDGRWR 85
AG TV PA + C G + P +IG + DD R+S H R D W
Sbjct 5 AGETV-PALRIRC-GDVLCTVTPGDAPVLIGRDLPAQIRADDPRVSPVHARIAVDGDHW- 61
Query 86 IVGNI--PRGMFVGGRRGSSVTVSDKTLIRFGDPPGGKALTFEVVRPSDSAAQHGRVQPS 143
++G+ G+FV G R SV V D +R G G +T V +D V +
Sbjct 62 VIGDAGGTTGVFVDGERVESVGVRDTVTVRLGHAEG-LVVTLAVDHATDPEEIEAGVARA 120
Query 144 ADLSDDPAHNAAPVAPDPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRS 203
+D RR EL ++R L+A+G+I+ L FE GR
Sbjct 121 GAAVED-----------------------RREELGFTRRRLSAEGVIDPQTLADFEAGRV 157
Query 204 WPRERTRAKLEEVLQWPAGTIARIRRGEPTEPATNPDASPGLRPADGPASLIAQAVTAA- 262
WP + RA+LE L W GTIA +R G P P D +++ V A
Sbjct 158 WPPDDARARLEVHLGWEPGTIAAVRAGSPA-------------PEDESTEILSDTVQMAV 204
Query 263 -VDGCSLAIAAL-------PATEDPEFTERAAPILADLRQLEAIAVQATRISRITPELIK 314
VD S+A+ + PA D + E +L DLR LE + A + +R P+
Sbjct 205 MVDAASIALGNVKARIDRAPAPHDAAYDEYVETVLFDLRGLEKMVRNAGKTTR-RPDGAV 263
Query 315 ALGAVRRHHDELMRLGATAPGATLAQRLYAARRRANLSTLETAQAAGVAEEMIVGAE 371
L +RR ++ +M A APGA L++RLY ARR A L+ E A AAGV+ E + AE
Sbjct 264 VLRDIRRTYNGVMTRAAQAPGAPLSRRLYVARRSAELTVEEAADAAGVSVEAVTDAE 320
>gi|126432653|ref|YP_001068344.1| FHA domain-containing protein [Mycobacterium sp. JLS]
gi|126232453|gb|ABN95853.1| FHA domain containing protein [Mycobacterium sp. JLS]
Length=343
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 113/357 (32%), Positives = 158/357 (45%), Gaps = 52/357 (14%)
Query 26 AGSTVGPAPLVACSGGTSDVIEPRRGVAIIGHSCRVGTQIDDSRISQTHLRAVSDDGRWR 85
AG TV PA + C G + P +IG + DD R+S H + D W
Sbjct 5 AGETV-PALRIRC-GDVLCTVTPGDAPVLIGRDLLAQIRADDPRVSPVHAQIAVDGDHW- 61
Query 86 IVGNI--PRGMFVGGRRGSSVTVSDKTLIRFGDPPGGKALTFEVVRPSDSAAQHGRVQPS 143
++G+ G+FV G R SV V D +R G G +T V +D V +
Sbjct 62 VIGDAGGTTGVFVDGERVESVGVRDTVTVRLGHAEG-LVVTLAVDHATDPEEIEAGVARA 120
Query 144 ADLSDDPAHNAAPVAPDPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRS 203
+D RR EL ++R L+A+G+I+ L FE GR
Sbjct 121 GAAVED-----------------------RREELGFTRRRLSAEGVIDPQTLADFEAGRV 157
Query 204 WPRERTRAKLEEVLQWPAGTIARIRRGEPTEPATNPDASPGLRPADGPASLIAQAVTAA- 262
WP + RA+LE L W GTIA +R G P P D +++ V A
Sbjct 158 WPPDDARARLEVHLGWEPGTIAAVRAGSPA-------------PEDESTEILSDTVQMAV 204
Query 263 -VDGCSLAIAAL-------PATEDPEFTERAAPILADLRQLEAIAVQATRISRITPELIK 314
VD S+ + + PA D + E +L DLR LE + A + +R P+
Sbjct 205 MVDAASIGLGNVKARIDRAPAPHDAAYDEYVETVLFDLRGLEKMVRNAGKTTR-RPDGAV 263
Query 315 ALGAVRRHHDELMRLGATAPGATLAQRLYAARRRANLSTLETAQAAGVAEEMIVGAE 371
L +RR ++ +M A APGA L++RLYAARR A L+ E A AAGV+ E + AE
Sbjct 264 VLRDIRRTYNGVMTRAAQAPGAPLSRRLYAARRSAELTVEEAADAAGVSVEAVTDAE 320
>gi|169628391|ref|YP_001702040.1| hypothetical protein MAB_1298c [Mycobacterium abscessus ATCC
19977]
gi|169240358|emb|CAM61386.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=152
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/146 (45%), Positives = 86/146 (59%), Gaps = 0/146 (0%)
Query 243 PGLRPADGPASLIAQAVTAAVDGCSLAIAALPATEDPEFTERAAPILADLRQLEAIAVQA 302
P + P DG A +I V AAV S AI LP DPE+ ER A +L+ LR+LE+ +A
Sbjct 2 PEVVPDDGEAPVIVSLVDAAVHMYSSAIDTLPDPSDPEYGERVAVVLSGLRKLESAISKA 61
Query 303 TRISRITPELIKALGAVRRHHDELMRLGATAPGATLAQRLYAARRRANLSTLETAQAAGV 362
SR+TP +I AL VR +D+LM+ A +P ATL QRLY ARRRA L+ ETA AG+
Sbjct 62 AGRSRVTPSVIVALSGVRHRYDDLMKAAANSPSATLGQRLYTARRRARLTAQETANGAGL 121
Query 363 AEEMIVGAEAEEELPAEATEAIEALI 388
+ E+EE + + I+ LI
Sbjct 122 KVGFLTAIESEEPVTEDEAAKIKDLI 147
>gi|118470189|ref|YP_890731.1| hypothetical protein MSMEG_6518 [Mycobacterium smegmatis str.
MC2 155]
gi|302595985|sp|A0R6E3.1|Y6518_MYCS2 RecName: Full=Uncharacterized protein MSMEG_6518
gi|118171476|gb|ABK72372.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=129
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/99 (52%), Positives = 62/99 (63%), Gaps = 0/99 (0%)
Query 269 AIAALPATEDPEFTERAAPILADLRQLEAIAVQATRISRITPELIKALGAVRRHHDELMR 328
AI ALP D EF ERAA +L+ LR+L+ +A SR TP +I AL VR +DELM
Sbjct 5 AIDALPPVGDAEFPERAAVVLSGLRKLQGSLAEAASRSRATPSVIVALSGVRTRYDELMT 64
Query 329 LGATAPGATLAQRLYAARRRANLSTLETAQAAGVAEEMI 367
A PGATL QRLY AR RA L+T E A GV +++I
Sbjct 65 TAAEGPGATLGQRLYVARLRAKLTTAEAANGIGVRKDLI 103
>gi|118468739|ref|YP_886011.1| forkhead-associated protein [Mycobacterium smegmatis str. MC2
155]
gi|118170026|gb|ABK70922.1| probable forkhead-associated protein [Mycobacterium smegmatis
str. MC2 155]
Length=199
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/140 (38%), Positives = 75/140 (54%), Gaps = 4/140 (2%)
Query 252 ASLIAQAVTAAVDGCSLAIAALPATEDPEFTERAAPILADLRQLEAIAVQATRISRITPE 311
+S+I AA+ S AI ALP ED +F +RA +L+ LR+L + +A R +P
Sbjct 11 SSIIVDLSEAAMHMYSAAIDALPFPEDKKFHKRADIVLSGLRKLRSALTEAASAQRPSPA 70
Query 312 LIKALGAVRRHHDELMRLGATAPGATLAQRLYAARRRANLSTLETAQAA----GVAEEMI 367
+ AL VR+ +D LM A APG++L Q++Y R A LS E A A G+ +E+
Sbjct 71 VAAALSGVRQRYDSLMAHAAAAPGSSLGQQIYVTRVAAKLSAEEVANGAGLRPGLLDELE 130
Query 368 VGAEAEEELPAEATEAIEAL 387
GA ++ A E I AL
Sbjct 131 AGATPTDDEAARIRETIAAL 150
>gi|296163993|ref|ZP_06846618.1| FHA domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295900645|gb|EFG80026.1| FHA domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=223
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/96 (45%), Positives = 56/96 (59%), Gaps = 15/96 (15%)
Query 165 RAGAAAAARRRELDI-SQRSLA--ADGIINAGALIAFEKGRSWPRERTRAKLEEVLQWPA 221
R G A A RR E+ + +QR LA A+ +N AL+ E+G+S+P R K E+ LQWP
Sbjct 20 RVGKAVADRRVEVGLETQRELADAANVSLNTAALL--ERGKSFPHRINRVKFEDALQWPR 77
Query 222 GTIARIRRGEPTEPATNPDASPGLRPADGPASLIAQ 257
GT+ +RRGEP P T P RPA A+L AQ
Sbjct 78 GTLDALRRGEPI-PQTQP------RPA---AALTAQ 103
>gi|209418044|ref|YP_002274073.1| hypothetical protein MULP_007 [Mycobacterium liflandii 128FXT]
gi|169245950|gb|ACA50971.1| conserved hypothetical protein [Mycobacterium marinum DL240490]
gi|169409176|gb|ACA57582.1| conserved hypothetical protein [Mycobacterium liflandii 128FXT]
Length=214
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/83 (44%), Positives = 47/83 (57%), Gaps = 10/83 (12%)
Query 165 RAGAAAAARRRELDI-SQRSLA--ADGIINAGALIAFEKGRSWPRERTRAKLEEVLQWPA 221
R G A A RR E+ +QR LA A+ +N AL+ E+G+S+P R K E+ L WP
Sbjct 13 RVGKAVADRRIEVGFETQRELAEAANVSLNTAALL--ERGKSFPHRANRIKFEDALGWPR 70
Query 222 GTIARIRRGEPTE-----PATNP 239
GT+ IRRG+P PAT P
Sbjct 71 GTLDAIRRGKPIPQSQPLPATQP 93
>gi|7476063|pir||T10041 hypothetical protein MLCB628.22c - Mycobacterium leprae
gi|2370289|emb|CAA75209.1| hypothetical protein [Mycobacterium leprae]
Length=107
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/48 (57%), Positives = 31/48 (65%), Gaps = 0/48 (0%)
Query 153 NAAPVAPDPGVVRAGAAAAARRRELDISQRSLAADGIINAGALIAFEK 200
N+A DPG +A A AA R ELD SQRSL ADG+INAG FE+
Sbjct 58 NSAANEQDPGSAQARADGAAHRSELDPSQRSLTADGVINAGTPTTFER 105
>gi|118471926|ref|YP_886019.1| ABC transporter ATP-binding protein [Mycobacterium smegmatis
str. MC2 155]
gi|118173213|gb|ABK74109.1| ABC transporter, ATP-binding protein [Mycobacterium smegmatis
str. MC2 155]
Length=899
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/84 (40%), Positives = 45/84 (54%), Gaps = 2/84 (2%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGNIP-RGMFVGGRRGSSVTVSDKTLI 112
+IG R +I IS+ HL D GRW + N GM+V GRR SSV + D ++
Sbjct 27 VIGRDLRADVRIAHPLISRAHLVLRFDQGRWVAIDNGSLNGMYVNGRRVSSVDLQDGQVL 86
Query 113 RFGDPPGGKALTFEVVRPSDSAAQ 136
G+P G + L+FEV R SA +
Sbjct 87 NIGNPDGPQ-LSFEVGRHQGSAGR 109
>gi|108798172|ref|YP_638369.1| FHA domain-containing protein [Mycobacterium sp. MCS]
gi|119867268|ref|YP_937220.1| ABC transporter-like protein [Mycobacterium sp. KMS]
gi|108768591|gb|ABG07313.1| FHA domain containing protein [Mycobacterium sp. MCS]
gi|119693357|gb|ABL90430.1| ABC transporter related protein [Mycobacterium sp. KMS]
Length=866
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/84 (40%), Positives = 43/84 (52%), Gaps = 2/84 (2%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGN-IPRGMFVGGRRGSSVTVSDKTLI 112
+IG R +I IS+ HL D GRW + N GMFV GRR +V + D +
Sbjct 27 VIGRDLRADVRIAHPLISRAHLVLRFDQGRWVAIDNGSLNGMFVNGRRVPAVDIRDGQSL 86
Query 113 RFGDPPGGKALTFEVVRPSDSAAQ 136
G+P G + LTFEV R SA +
Sbjct 87 NIGNPDGPQ-LTFEVGRHQGSAGR 109
>gi|126433830|ref|YP_001069521.1| ABC transporter-like protein [Mycobacterium sp. JLS]
gi|126233630|gb|ABN97030.1| ABC transporter related protein [Mycobacterium sp. JLS]
Length=866
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/84 (40%), Positives = 43/84 (52%), Gaps = 2/84 (2%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGN-IPRGMFVGGRRGSSVTVSDKTLI 112
+IG R +I IS+ HL D GRW + N GMFV GRR +V + D +
Sbjct 27 VIGRDLRADVRIAHPLISRAHLVLRFDQGRWVAIDNGSLNGMFVNGRRVPAVDLRDGQSL 86
Query 113 RFGDPPGGKALTFEVVRPSDSAAQ 136
G+P G + LTFEV R SA +
Sbjct 87 NIGNPDGPQ-LTFEVGRHQGSAGR 109
>gi|336457706|gb|EGO36706.1| ABC-type multidrug transport system, ATPase component [Mycobacterium
avium subsp. paratuberculosis S397]
Length=460
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (36%), Positives = 44/84 (53%), Gaps = 2/84 (2%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGNIP-RGMFVGGRRGSSVTVSDKTLI 112
+IG R ++ IS+THL + GRW + N G++V RR V ++D T +
Sbjct 27 VIGRDLRADLRVAHPLISRTHLIVRYEQGRWVAIDNGSLNGLYVNNRRVPMVDINDGTRV 86
Query 113 RFGDPPGGKALTFEVVRPSDSAAQ 136
G+ P G AL+FEV R SA +
Sbjct 87 NMGN-PDGPALSFEVGRHQGSAGR 109
>gi|296164688|ref|ZP_06847254.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295899996|gb|EFG79436.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Mycobacterium parascrofulaceum ATCC BAA-614]
Length=887
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/83 (38%), Positives = 43/83 (52%), Gaps = 2/83 (2%)
Query 55 IGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGN-IPRGMFVGGRRGSSVTVSDKTLIR 113
IG R ++ IS+THL D GRW + N G+FV +R +V + D T +
Sbjct 21 IGRDLRADVRVAHPLISRTHLIVRFDQGRWIAIDNGSLNGLFVNHQRVPTVDIQDGTRVN 80
Query 114 FGDPPGGKALTFEVVRPSDSAAQ 136
G+ P G ALTFEV R +A +
Sbjct 81 IGN-PDGPALTFEVGRHQGTAGR 102
>gi|41407555|ref|NP_960391.1| hypothetical protein MAP1457 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395908|gb|AAS03774.1| hypothetical protein MAP_1457 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=854
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (36%), Positives = 44/84 (53%), Gaps = 2/84 (2%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGN-IPRGMFVGGRRGSSVTVSDKTLI 112
+IG R ++ IS+THL + GRW + N G++V RR V ++D T +
Sbjct 30 VIGRDLRADLRVAHPLISRTHLIVRYEQGRWVAIDNGSLNGLYVNNRRVPMVDINDGTRV 89
Query 113 RFGDPPGGKALTFEVVRPSDSAAQ 136
G+ P G AL+FEV R SA +
Sbjct 90 NMGN-PDGPALSFEVGRHQGSAGR 112
>gi|120402553|ref|YP_952382.1| ABC transporter--like protein [Mycobacterium vanbaalenii PYR-1]
gi|119955371|gb|ABM12376.1| ABC transporter-related protein [Mycobacterium vanbaalenii PYR-1]
Length=861
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/82 (37%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGN-IPRGMFVGGRRGSSVTVSDKTLI 112
++G R +I IS+ HL D GRW + N GM+V GRR + ++D T +
Sbjct 27 VVGRDLRADIRIAHPLISRAHLVLRFDQGRWLAIDNGSLNGMYVNGRRVPAAEITDGTQV 86
Query 113 RFGDPPGGKALTFEVVRPSDSA 134
G+ P G L FEV R SA
Sbjct 87 HIGN-PDGPLLVFEVGRHQGSA 107
>gi|254775457|ref|ZP_05216973.1| ABC transporter, ATP-binding protein [Mycobacterium avium subsp.
avium ATCC 25291]
Length=872
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/84 (36%), Positives = 44/84 (53%), Gaps = 2/84 (2%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGN-IPRGMFVGGRRGSSVTVSDKTLI 112
+IG R ++ IS+THL + GRW + N G++V RR V ++D T +
Sbjct 27 VIGRDLRADLRVAHPLISRTHLIVRYEQGRWVAIDNGSLNGLYVNNRRVPMVDINDGTRV 86
Query 113 RFGDPPGGKALTFEVVRPSDSAAQ 136
G+ P G AL+FEV R SA +
Sbjct 87 NMGN-PDGPALSFEVGRHQGSAGR 109
>gi|118465124|ref|YP_882196.1| ABC transporter ATP-binding protein [Mycobacterium avium 104]
gi|118166411|gb|ABK67308.1| ABC transporter, ATP-binding protein [Mycobacterium avium 104]
Length=862
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/84 (36%), Positives = 44/84 (53%), Gaps = 2/84 (2%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGN-IPRGMFVGGRRGSSVTVSDKTLI 112
+IG R ++ IS+THL + GRW + N G++V RR V ++D T +
Sbjct 17 VIGRDLRADLRVAHPLISRTHLIVRYEQGRWVAIDNGSLNGLYVNNRRVPMVDINDGTRV 76
Query 113 RFGDPPGGKALTFEVVRPSDSAAQ 136
G+ P G AL+FEV R SA +
Sbjct 77 NMGN-PDGPALSFEVGRHQGSAGR 99
>gi|342860792|ref|ZP_08717442.1| ABC transporter ATP-binding protein [Mycobacterium colombiense
CECT 3035]
gi|342131816|gb|EGT85073.1| ABC transporter ATP-binding protein [Mycobacterium colombiense
CECT 3035]
Length=887
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/93 (33%), Positives = 44/93 (48%), Gaps = 2/93 (2%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGN-IPRGMFVGGRRGSSVTVSDKTLI 112
++G + +I D RIS+ HL D GRW + N G ++ G R V + D I
Sbjct 2 VVGRDVQADVRIADPRISRAHLILRFDQGRWLAIDNGSLNGTYLNGYRMPVVDIHDGQSI 61
Query 113 RFGDPPGGKALTFEVVRPSDSAAQHGRVQPSAD 145
G+P G + LTF + A R++PS D
Sbjct 62 HIGNPQGPR-LTFAIGPQQGHAGHPQRIRPSHD 93
>gi|145225458|ref|YP_001136136.1| ABC transporter-like protein [Mycobacterium gilvum PYR-GCK]
gi|315445811|ref|YP_004078690.1| ABC-type multidrug transporter, ATPase component [Mycobacterium
sp. Spyr1]
gi|145217944|gb|ABP47348.1| ABC transporter related protein [Mycobacterium gilvum PYR-GCK]
gi|315264114|gb|ADU00856.1| ABC-type multidrug transport system, ATPase component [Mycobacterium
sp. Spyr1]
Length=869
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/82 (38%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGN-IPRGMFVGGRRGSSVTVSDKTLI 112
++G R +I IS+ HL D GRW + N GM+V GRR + +SD +
Sbjct 27 VVGRDLRADVRIAHPLISRAHLVLRFDQGRWIAIDNGSLNGMYVNGRRVPAADISDGGQL 86
Query 113 RFGDPPGGKALTFEVVRPSDSA 134
G+ P G LTFEV R SA
Sbjct 87 HIGN-PDGPLLTFEVGRHQGSA 107
>gi|240172661|ref|ZP_04751320.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
kansasii ATCC 12478]
Length=150
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/109 (34%), Positives = 46/109 (43%), Gaps = 3/109 (2%)
Query 22 QMSKAGSTVGPAPLVACSGGTSDVIEPRRGVAIIGHSCRVGTQIDDSRISQTHLRAVSDD 81
Q+ TV P L G V +IG R ++ D IS+ HL D
Sbjct 7 QLVPMTQTVAPPVLTVRYNGAERTFAAGHDV-VIGRDLRADVRVADPLISRVHLLLRFDQ 65
Query 82 GRWRIVGN-IPRGMFVGGRRGSSVTVSDKTLIRFGDPPGGKALTFEVVR 129
GRW + N G++V RR V + D I G+ P G AL FEV R
Sbjct 66 GRWIAIDNGSLNGLYVSNRRVPVVDIHDGQRINIGN-PDGPALDFEVGR 113
>gi|254822556|ref|ZP_05227557.1| hypothetical protein MintA_21684 [Mycobacterium intracellulare
ATCC 13950]
Length=783
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/113 (32%), Positives = 53/113 (47%), Gaps = 7/113 (6%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIV-GNIPRGMFVGGRRGSSVTVSDKTLI 112
++G+ R ++ I++ HL D GRW V N G+++ GRR V + D I
Sbjct 27 VVGNDLRADLRVAHPLIARAHLLLRFDRGRWLAVDNNTLNGVYLDGRRVPVVDIRDGQSI 86
Query 113 RFGDPPGGKALTFEVVRPSDSAAQH---GRV--QPSADLSDDPAHNAAPVAPD 160
G P G + +TFEV RP + + GR QP AD + P A P+
Sbjct 87 NIGKPDGPR-ITFEVGRPPARSFRRRDAGRTAPQPPADAGEFPTTRVAVAGPE 138
>gi|254820360|ref|ZP_05225361.1| hypothetical protein MintA_10546 [Mycobacterium intracellulare
ATCC 13950]
Length=181
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/84 (36%), Positives = 41/84 (49%), Gaps = 2/84 (2%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGNIP-RGMFVGGRRGSSVTVSDKTLI 112
+IG R ++ IS+THL D GRW V N G++ RR + + D +
Sbjct 17 VIGRDLRADVRVAHPLISRTHLIVRYDQGRWVAVDNGSLNGLYANNRRVPVIDIQDGMRV 76
Query 113 RFGDPPGGKALTFEVVRPSDSAAQ 136
G+ P G ALTFEV R SA +
Sbjct 77 NVGN-PDGPALTFEVGRHQGSAGR 99
>gi|254820993|ref|ZP_05225994.1| hypothetical protein MintA_13745 [Mycobacterium intracellulare
ATCC 13950]
Length=839
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/93 (33%), Positives = 43/93 (47%), Gaps = 2/93 (2%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGN-IPRGMFVGGRRGSSVTVSDKTLI 112
++G + QI D RIS+ HL D GRW + N G ++ G R + + D I
Sbjct 2 VVGRDAQADVQIADPRISRAHLILRFDQGRWLAIDNGSLNGTYLNGYRMPVIDIHDGQSI 61
Query 113 RFGDPPGGKALTFEVVRPSDSAAQHGRVQPSAD 145
G+P G LTF + A + R +PS D
Sbjct 62 HVGNPR-GPHLTFAIGPRQGQATRPARTRPSHD 93
>gi|240169070|ref|ZP_04747729.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
kansasii ATCC 12478]
Length=853
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/77 (38%), Positives = 36/77 (47%), Gaps = 2/77 (2%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWR-IVGNIPRGMFVGGRRGSSVTVSDKTLI 112
++G R +I IS+ HL D GRW I N G F GRR V + D +
Sbjct 2 VVGRDLRADMRITHPLISRAHLLLRFDQGRWLAIDNNSLNGTFCNGRRVPMVDIQDGQSV 61
Query 113 RFGDPPGGKALTFEVVR 129
G+ P G LTFEV R
Sbjct 62 NIGN-PDGPLLTFEVGR 77
>gi|183981196|ref|YP_001849487.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
marinum M]
gi|183174522|gb|ACC39632.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium
marinum M]
Length=873
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/77 (38%), Positives = 37/77 (49%), Gaps = 2/77 (2%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWR-IVGNIPRGMFVGGRRGSSVTVSDKTLI 112
++G R +I IS+ HL D GRW I N G FV GRR V + D +
Sbjct 27 VVGRDLRADMRITHPLISRAHLLLRFDQGRWLAIDNNSLNGTFVNGRRVPMVEIYDGQSL 86
Query 113 RFGDPPGGKALTFEVVR 129
G+ P G L+FEV R
Sbjct 87 NIGN-PDGPLLSFEVGR 102
>gi|269125959|ref|YP_003299329.1| XRE family transcriptional regulator [Thermomonospora curvata
DSM 43183]
gi|268310917|gb|ACY97291.1| transcriptional regulator, XRE family [Thermomonospora curvata
DSM 43183]
Length=141
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/83 (35%), Positives = 39/83 (47%), Gaps = 4/83 (4%)
Query 165 RAGAAAAARRRELDISQRSLAADGIINAGALIAFEKGRSWPRERTRAKLEEVLQWPAGTI 224
R ARR L ++Q LA + + E G WP+ RTR +E L+W G +
Sbjct 9 RVAKYVVARRGSLGLTQEQLAERAGVTVKTIYNLESGGRWPQARTRGAIEAALRWRPGDL 68
Query 225 ARIRRGEPTEPATNPD--ASPGL 245
RI GE EP+ P+ A P L
Sbjct 69 VRI--GEGQEPSVIPEEAAEPDL 89
>gi|41409563|ref|NP_962399.1| hypothetical protein MAP3465 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398394|gb|AAS06015.1| hypothetical protein MAP_3465 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=873
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/78 (36%), Positives = 37/78 (48%), Gaps = 2/78 (2%)
Query 53 AIIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGN-IPRGMFVGGRRGSSVTVSDKTL 111
++G R +I IS+ HL D G+W + N G FV GRR V + D
Sbjct 28 VVVGRDLRADMRITHPLISRAHLLLRYDQGKWLAIDNGSLNGTFVNGRRVPVVEIHDGCA 87
Query 112 IRFGDPPGGKALTFEVVR 129
I G+ P G LTF+V R
Sbjct 88 INIGN-PDGPLLTFDVGR 104
>gi|118466082|ref|YP_883461.1| ABC transporter ATP-binding protein [Mycobacterium avium 104]
gi|118167369|gb|ABK68266.1| ABC transporter, ATP-binding protein [Mycobacterium avium 104]
Length=846
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/77 (37%), Positives = 37/77 (49%), Gaps = 2/77 (2%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGN-IPRGMFVGGRRGSSVTVSDKTLI 112
++G R +I IS+ HL D G+W + N G FV GRR V + D I
Sbjct 2 VVGRDLRADMRITHPLISRAHLLLRYDQGKWLAIDNGSLNGTFVNGRRVPVVEIHDGCAI 61
Query 113 RFGDPPGGKALTFEVVR 129
G+ P G LTF+V R
Sbjct 62 NIGN-PDGPLLTFDVGR 77
>gi|296164507|ref|ZP_06847078.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295900107|gb|EFG79542.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Mycobacterium parascrofulaceum ATCC BAA-614]
Length=850
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (50%), Gaps = 2/75 (2%)
Query 54 IIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGN-IPRGMFVGGRRGSSVTVSDKTLI 112
++G R +I D RIS+ HL D GRW + N G ++ G R + V D I
Sbjct 28 VVGRDARADVRIADPRISRAHLILRFDQGRWLAIDNGSLNGTYLNGYRMPVIDVHDGQSI 87
Query 113 RFGDPPGGKALTFEV 127
G+P G + LTF V
Sbjct 88 HVGNPQGPR-LTFAV 101
>gi|240169069|ref|ZP_04747728.1| ABC transporter, ATP-binding protein [Mycobacterium kansasii
ATCC 12478]
Length=813
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (51%), Gaps = 1/75 (1%)
Query 53 AIIGHSCRVGTQIDDSRISQTHLRAVSDDGRWRIVGNIPRGMFVGGRRGSSVTVSDKTLI 112
AI+G R ++ ++Q H+ + G W + N GMFV GRR V + D ++
Sbjct 19 AIVGSDLRADLRVAHPLVAQAHVVVRFEQGNWIAIDNSRTGMFVDGRRVPLVDIRDGLVV 78
Query 113 RFGDPPGGKALTFEV 127
G P G + ++FEV
Sbjct 79 NLGRPDGPR-ISFEV 92
Lambda K H
0.315 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 771196383050
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40