BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3866
Length=283
Score E
Sequences producing significant alignments: (Bits) Value
gi|308232596|ref|ZP_07416567.2| hypothetical protein TMAG_00613 ... 561 3e-158
gi|15611002|ref|NP_218383.1| hypothetical protein Rv3866 [Mycoba... 561 3e-158
gi|340628838|ref|YP_004747290.1| hypothetical protein MCAN_38881... 560 1e-157
gi|298527340|ref|ZP_07014749.1| conserved hypothetical protein [... 560 1e-157
gi|294995553|ref|ZP_06801244.1| hypothetical protein Mtub2_13837... 531 4e-149
gi|240168345|ref|ZP_04747004.1| hypothetical protein MkanA1_0347... 463 2e-128
gi|183985412|ref|YP_001853703.1| hypothetical protein MMAR_5441 ... 456 2e-126
gi|240170253|ref|ZP_04748912.1| hypothetical protein MkanA1_1314... 409 3e-112
gi|118472873|ref|YP_884475.1| hypothetical protein MSMEG_0057 [M... 386 2e-105
gi|108797043|ref|YP_637240.1| hypothetical protein Mmcs_0062 [My... 385 4e-105
gi|126432665|ref|YP_001068356.1| hypothetical protein Mjls_0052 ... 385 4e-105
gi|120401098|ref|YP_950927.1| hypothetical protein Mvan_0070 [My... 377 8e-103
gi|145221370|ref|YP_001132048.1| hypothetical protein Mflv_0775 ... 370 1e-100
gi|315441746|ref|YP_004074625.1| hypothetical protein Mspyr1_005... 367 9e-100
gi|213855495|ref|ZP_03383735.1| hypothetical protein SentesT_161... 169 5e-40
gi|2370286|emb|CAA75206.1| hypothetical protein [Mycobacterium l... 166 4e-39
gi|54022788|ref|YP_117030.1| hypothetical protein nfa8210 [Nocar... 112 5e-23
gi|317506950|ref|ZP_07964720.1| hypothetical protein HMPREF9336_... 83.6 3e-14
gi|296393779|ref|YP_003658663.1| hypothetical protein Srot_1368 ... 76.3 4e-12
gi|2370287|emb|CAA75207.1| hypothetical protein [Mycobacterium l... 76.3 5e-12
gi|262203518|ref|YP_003274726.1| hypothetical protein Gbro_3645 ... 73.9 2e-11
gi|317506399|ref|ZP_07964206.1| hypothetical protein HMPREF9336_... 73.9 3e-11
gi|169629313|ref|YP_001702962.1| hypothetical protein MAB_2227c ... 72.8 5e-11
gi|118470815|ref|YP_885033.1| DNA-binding protein [Mycobacterium... 72.0 1e-10
gi|15828362|ref|NP_302625.1| DNA-binding protein [Mycobacterium ... 69.7 5e-10
gi|240172731|ref|ZP_04751390.1| hypothetical protein MkanA1_2567... 68.2 1e-09
gi|343927680|ref|ZP_08767148.1| hypothetical protein GOALK_097_0... 67.8 2e-09
gi|296165971|ref|ZP_06848429.1| DNA-binding protein [Mycobacteri... 67.0 3e-09
gi|120401444|ref|YP_951273.1| putative DNA-binding protein [Myco... 66.6 4e-09
gi|315442104|ref|YP_004074983.1| hypothetical protein Mspyr1_043... 66.2 6e-09
gi|145220926|ref|YP_001131604.1| putative DNA-binding protein [M... 65.5 9e-09
gi|118465963|ref|YP_883987.1| hypothetical protein MAV_4864 [Myc... 64.7 2e-08
gi|108797358|ref|YP_637555.1| putative DNA-binding protein [Myco... 64.3 2e-08
gi|41409883|ref|NP_962719.1| hypothetical protein MAP3785 [Mycob... 63.5 4e-08
gi|333988937|ref|YP_004521551.1| hypothetical protein JDM601_029... 63.2 4e-08
gi|126432979|ref|YP_001068670.1| putative DNA-binding protein [M... 63.2 4e-08
gi|145226134|ref|YP_001136788.1| hypothetical protein Mflv_5539 ... 62.8 5e-08
gi|289445828|ref|ZP_06435572.1| conserved hypothetical protein [... 62.0 1e-07
gi|15607430|ref|NP_214803.1| hypothetical protein Rv0289 [Mycoba... 61.6 1e-07
gi|254777304|ref|ZP_05218820.1| hypothetical protein MaviaA2_219... 61.6 1e-07
gi|342859227|ref|ZP_08715881.1| hypothetical protein MCOL_10123 ... 61.6 1e-07
gi|336460256|gb|EGO39159.1| hypothetical protein MAPs_42840 [Myc... 61.2 2e-07
gi|226363324|ref|YP_002781106.1| hypothetical protein ROP_39140 ... 60.8 2e-07
gi|111021019|ref|YP_703991.1| hypothetical protein RHA1_ro04036 ... 60.5 3e-07
gi|183980576|ref|YP_001848867.1| hypothetical protein MMAR_0548 ... 60.1 4e-07
gi|118616925|ref|YP_905257.1| hypothetical protein MUL_1211 [Myc... 59.3 6e-07
gi|296138069|ref|YP_003645312.1| hypothetical protein Tpau_0330 ... 59.3 6e-07
gi|254821603|ref|ZP_05226604.1| hypothetical protein MintA_16837... 57.8 2e-06
gi|317506273|ref|ZP_07964089.1| hypothetical protein HMPREF9336_... 55.5 8e-06
gi|296393174|ref|YP_003658058.1| hypothetical protein Srot_0747 ... 53.1 4e-05
>gi|308232596|ref|ZP_07416567.2| hypothetical protein TMAG_00613 [Mycobacterium tuberculosis SUMu001]
gi|308369263|ref|ZP_07417096.2| hypothetical protein TMBG_02406 [Mycobacterium tuberculosis SUMu002]
gi|308371485|ref|ZP_07425109.2| hypothetical protein TMCG_01376 [Mycobacterium tuberculosis SUMu003]
21 more sequence titles
Length=285
Score = 561 bits (1447), Expect = 3e-158, Method: Compositional matrix adjust.
Identities = 283/283 (100%), Positives = 283/283 (100%), Gaps = 0/283 (0%)
Query 1 MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ 60
MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ
Sbjct 3 MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ 62
Query 61 VQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH 120
VQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH
Sbjct 63 VQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH 122
Query 121 VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG 180
VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG
Sbjct 123 VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG 182
Query 181 IAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD 240
IAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD
Sbjct 183 IAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD 242
Query 241 LYGSFLPGTQQNLERALDGLLELLPAGAWLDHTSDHAQASSRG 283
LYGSFLPGTQQNLERALDGLLELLPAGAWLDHTSDHAQASSRG
Sbjct 243 LYGSFLPGTQQNLERALDGLLELLPAGAWLDHTSDHAQASSRG 285
>gi|15611002|ref|NP_218383.1| hypothetical protein Rv3866 [Mycobacterium tuberculosis H37Rv]
gi|31795040|ref|NP_857533.1| hypothetical protein Mb3896 [Mycobacterium bovis AF2122/97]
gi|121639784|ref|YP_980008.1| hypothetical protein BCG_3929 [Mycobacterium bovis BCG str. Pasteur
1173P2]
50 more sequence titles
Length=283
Score = 561 bits (1447), Expect = 3e-158, Method: Compositional matrix adjust.
Identities = 283/283 (100%), Positives = 283/283 (100%), Gaps = 0/283 (0%)
Query 1 MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ 60
MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ
Sbjct 1 MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ 60
Query 61 VQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH 120
VQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH
Sbjct 61 VQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH 120
Query 121 VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG 180
VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG
Sbjct 121 VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG 180
Query 181 IAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD 240
IAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD
Sbjct 181 IAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD 240
Query 241 LYGSFLPGTQQNLERALDGLLELLPAGAWLDHTSDHAQASSRG 283
LYGSFLPGTQQNLERALDGLLELLPAGAWLDHTSDHAQASSRG
Sbjct 241 LYGSFLPGTQQNLERALDGLLELLPAGAWLDHTSDHAQASSRG 283
>gi|340628838|ref|YP_004747290.1| hypothetical protein MCAN_38881 [Mycobacterium canettii CIPT
140010059]
gi|340007028|emb|CCC46219.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=283
Score = 560 bits (1442), Expect = 1e-157, Method: Compositional matrix adjust.
Identities = 282/283 (99%), Positives = 283/283 (100%), Gaps = 0/283 (0%)
Query 1 MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ 60
MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ
Sbjct 1 MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ 60
Query 61 VQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH 120
VQRDLTAQGVLD+HGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH
Sbjct 61 VQRDLTAQGVLDVHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH 120
Query 121 VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG 180
VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG
Sbjct 121 VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG 180
Query 181 IAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD 240
IAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD
Sbjct 181 IAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD 240
Query 241 LYGSFLPGTQQNLERALDGLLELLPAGAWLDHTSDHAQASSRG 283
LYGSFLPGTQQNLERALDGLLELLPAGAWLDHTSDHAQASSRG
Sbjct 241 LYGSFLPGTQQNLERALDGLLELLPAGAWLDHTSDHAQASSRG 283
>gi|298527340|ref|ZP_07014749.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|298497134|gb|EFI32428.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=283
Score = 560 bits (1442), Expect = 1e-157, Method: Compositional matrix adjust.
Identities = 282/283 (99%), Positives = 282/283 (99%), Gaps = 0/283 (0%)
Query 1 MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ 60
MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ
Sbjct 1 MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ 60
Query 61 VQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH 120
VQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH
Sbjct 61 VQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH 120
Query 121 VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG 180
VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG
Sbjct 121 VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG 180
Query 181 IAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD 240
IAPASARVYAEIVGNPTGWVE VASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD
Sbjct 181 IAPASARVYAEIVGNPTGWVETVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD 240
Query 241 LYGSFLPGTQQNLERALDGLLELLPAGAWLDHTSDHAQASSRG 283
LYGSFLPGTQQNLERALDGLLELLPAGAWLDHTSDHAQASSRG
Sbjct 241 LYGSFLPGTQQNLERALDGLLELLPAGAWLDHTSDHAQASSRG 283
>gi|294995553|ref|ZP_06801244.1| hypothetical protein Mtub2_13837 [Mycobacterium tuberculosis
210]
Length=268
Score = 531 bits (1368), Expect = 4e-149, Method: Compositional matrix adjust.
Identities = 267/268 (99%), Positives = 268/268 (100%), Gaps = 0/268 (0%)
Query 16 VVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHG 75
+VGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHG
Sbjct 1 MVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHG 60
Query 76 EPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQLV 135
EPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQLV
Sbjct 61 EPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQLV 120
Query 136 APQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYGIAPASARVYAEIVGN 195
APQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYGIAPASARVYAEIVGN
Sbjct 121 APQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYGIAPASARVYAEIVGN 180
Query 196 PTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGDLYGSFLPGTQQNLER 255
PTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGDLYGSFLPGTQQNLER
Sbjct 181 PTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGDLYGSFLPGTQQNLER 240
Query 256 ALDGLLELLPAGAWLDHTSDHAQASSRG 283
ALDGLLELLPAGAWLDHTSDHAQASSRG
Sbjct 241 ALDGLLELLPAGAWLDHTSDHAQASSRG 268
>gi|240168345|ref|ZP_04747004.1| hypothetical protein MkanA1_03472 [Mycobacterium kansasii ATCC
12478]
Length=283
Score = 463 bits (1191), Expect = 2e-128, Method: Compositional matrix adjust.
Identities = 226/283 (80%), Positives = 253/283 (90%), Gaps = 0/283 (0%)
Query 1 MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ 60
MTGP A GRAG D+VVGVEVTIDGMLV+ADRLHLVDFPV LGIRPNIPQ+DLR+IVW+Q
Sbjct 1 MTGPLATGRAGLVDDVVGVEVTIDGMLVLADRLHLVDFPVALGIRPNIPQDDLREIVWDQ 60
Query 61 VQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH 120
V+RDLTAQGVLD +G P PTVA MV+TL RPDRTLE RWWRRD+GGVMVRFVVCR+ DRH
Sbjct 61 VRRDLTAQGVLDHNGYPHPTVASMVDTLSRPDRTLEARWWRRDVGGVMVRFVVCRKDDRH 120
Query 121 VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG 180
VIA R+GD+LVLQLVAPQVGLAGMVTAVLG A+PA+VEPLTG+A+ELAECTTA+QLT+YG
Sbjct 121 VIAVRNGDLLVLQLVAPQVGLAGMVTAVLGTADPASVEPLTGIASELAECTTAAQLTRYG 180
Query 181 IAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD 240
+AP +AR+Y EIV NP WVEIVASQRHPGGTTT T AAAGVLDS GR+VSLPR V G+
Sbjct 181 LAPTAARIYTEIVSNPDSWVEIVASQRHPGGTTTHTKAAAGVLDSAHGRVVSLPRIVSGE 240
Query 241 LYGSFLPGTQQNLERALDGLLELLPAGAWLDHTSDHAQASSRG 283
LYGSFLPGT QNL+ ALD L+ELLPAG+WLDH SDH QAS+RG
Sbjct 241 LYGSFLPGTPQNLQLALDALVELLPAGSWLDHASDHTQASARG 283
>gi|183985412|ref|YP_001853703.1| hypothetical protein MMAR_5441 [Mycobacterium marinum M]
gi|183178738|gb|ACC43848.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=279
Score = 456 bits (1174), Expect = 2e-126, Method: Compositional matrix adjust.
Identities = 226/283 (80%), Positives = 252/283 (90%), Gaps = 4/283 (1%)
Query 1 MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ 60
MTGP A GRAGT D+VVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLR+IVW+Q
Sbjct 1 MTGPLATGRAGTGDDVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLREIVWDQ 60
Query 61 VQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH 120
V RDLTAQGVLD +G+P P VA MV+TL R DRTLEGRWWRRD+GGVMVRFVVCR+G+RH
Sbjct 61 VARDLTAQGVLDHNGQPHPAVAAMVDTLSRADRTLEGRWWRRDVGGVMVRFVVCRKGERH 120
Query 121 VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG 180
VIA RDGDMLVLQLVAP+VGLAGMVTAVLG AEPANVEPLTG+A+EL ECT A+QLT+YG
Sbjct 121 VIAVRDGDMLVLQLVAPRVGLAGMVTAVLGTAEPANVEPLTGIASELGECTNAAQLTRYG 180
Query 181 IAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD 240
+ P +AR+Y EIV NP WVEIVAS+RHPGGTTT T AAAGVLDS GRLVSLPR+VGG+
Sbjct 181 LTPTTARLYTEIVTNPKSWVEIVASERHPGGTTTHTKAAAGVLDSAHGRLVSLPRQVGGE 240
Query 241 LYGSFLPGTQQNLERALDGLLELLPAGAWLDHTSDHAQASSRG 283
LYGSFLPGT+QNL+RALD LLELLP+G+WL D A A++RG
Sbjct 241 LYGSFLPGTEQNLQRALDSLLELLPSGSWL----DRADATARG 279
>gi|240170253|ref|ZP_04748912.1| hypothetical protein MkanA1_13143 [Mycobacterium kansasii ATCC
12478]
Length=275
Score = 409 bits (1051), Expect = 3e-112, Method: Compositional matrix adjust.
Identities = 201/271 (75%), Positives = 231/271 (86%), Gaps = 0/271 (0%)
Query 1 MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ 60
M+G A AG D+V GV++TID +LVIA+RL +VDFP LGIRPNIPQ++L D+VW++
Sbjct 1 MSGRLATDGAGLVDDVAGVKLTIDSVLVIAERLPMVDFPTALGIRPNIPQKELPDVVWDR 60
Query 61 VQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH 120
V+RDLTAQGVLD +G+P PTVA MV+TL RPDRTLEGRWWRR +GG M RFVVCR+GDRH
Sbjct 61 VRRDLTAQGVLDQYGQPHPTVAAMVDTLSRPDRTLEGRWWRRYVGGAMARFVVCRKGDRH 120
Query 121 VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG 180
V+AARDG MLVLQLV PQVGLAGM+T VLGPA PANVEPL GVA+ELAECTTA+ ++G
Sbjct 121 VVAARDGQMLVLQLVEPQVGLAGMITTVLGPALPANVEPLAGVASELAECTTAAPPARHG 180
Query 181 IAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD 240
+ A+ RV+ EIV NP+ WVEIVASQRH GGTTTQTDAAAGVLDS LGRLVSLPR VGG+
Sbjct 181 VPAATTRVFTEIVNNPSSWVEIVASQRHSGGTTTQTDAAAGVLDSTLGRLVSLPRCVGGE 240
Query 241 LYGSFLPGTQQNLERALDGLLELLPAGAWLD 271
LYG FLPGTQQNL+RALD LLELLPAGAW D
Sbjct 241 LYGCFLPGTQQNLQRALDSLLELLPAGAWFD 271
>gi|118472873|ref|YP_884475.1| hypothetical protein MSMEG_0057 [Mycobacterium smegmatis str.
MC2 155]
gi|118174160|gb|ABK75056.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=282
Score = 386 bits (991), Expect = 2e-105, Method: Compositional matrix adjust.
Identities = 191/275 (70%), Positives = 220/275 (80%), Gaps = 3/275 (1%)
Query 1 MTGPSAAGRAGTA--DNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVW 58
MT P A G A D+VVGVEVTIDGMLVIAD+L L DFP ++GIR NIPQ DLR +VW
Sbjct 1 MTAPFTA-ETGDAHIDDVVGVEVTIDGMLVIADKLGLTDFPPSMGIRLNIPQPDLRKVVW 59
Query 59 EQVQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGD 118
EQV+RDL+AQGVLD++G P P VA MV+TL R DRTLE RWWRRD GG M+RFVVCR+G
Sbjct 60 EQVERDLSAQGVLDVYGNPHPEVAAMVDTLARADRTLECRWWRRDAGGKMIRFVVCRKGG 119
Query 119 RHVIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQ 178
RHV+AARD D+LVLQ VAPQ+GLAGMV VLG PANVEPLTGVA LA+C TA +LT
Sbjct 120 RHVVAARDNDLLVLQRVAPQIGLAGMVMTVLGEGSPANVEPLTGVADRLAQCRTAEELTG 179
Query 179 YGIAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVG 238
YGI P SAR YA I+ P GWVEIVA++RHPGGTT+Q D AAGVLD+K GR+VS+PRRV
Sbjct 180 YGIPPTSARAYASIISEPDGWVEIVANERHPGGTTSQVDVAAGVLDAKQGRIVSIPRRVN 239
Query 239 GDLYGSFLPGTQQNLERALDGLLELLPAGAWLDHT 273
G+LYGSFL GT+ NLERAL+GL+E LP+ W D T
Sbjct 240 GELYGSFLSGTKDNLERALEGLVEFLPSKTWFDKT 274
>gi|108797043|ref|YP_637240.1| hypothetical protein Mmcs_0062 [Mycobacterium sp. MCS]
gi|119866128|ref|YP_936080.1| hypothetical protein Mkms_0071 [Mycobacterium sp. KMS]
gi|108767462|gb|ABG06184.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119692217|gb|ABL89290.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=282
Score = 385 bits (989), Expect = 4e-105, Method: Compositional matrix adjust.
Identities = 185/273 (68%), Positives = 218/273 (80%), Gaps = 0/273 (0%)
Query 1 MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ 60
M G AA D+VV VEVTIDGMLVIADR+ DFP +LGIR NIPQ DLR IVW+Q
Sbjct 2 MAGAPAASSGTHYDDVVAVEVTIDGMLVIADRMSASDFPPSLGIRLNIPQPDLRKIVWDQ 61
Query 61 VQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH 120
V RDLT QGVL+ +G+P P VA MV+TL R DR LEGRWWRRD+GG MVRFVVCR+GDRH
Sbjct 62 VARDLTEQGVLNFYGDPHPEVAAMVDTLSRSDRVLEGRWWRRDLGGKMVRFVVCRKGDRH 121
Query 121 VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG 180
V+AARD +MLVLQ +APQ+GLA MVT VLG A PA+VEPLTGVA +LA+C TA++L YG
Sbjct 122 VVAARDDEMLVLQRIAPQIGLANMVTTVLGTAPPADVEPLTGVAAKLAQCRTANELQAYG 181
Query 181 IAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD 240
IA SAR YA+I+ P WVE+ A++RHPGGT T TD AAGVLDS GR+VS+PRRV G+
Sbjct 182 IALTSARAYADIISEPASWVELTATERHPGGTQTTTDVAAGVLDSPHGRIVSIPRRVSGE 241
Query 241 LYGSFLPGTQQNLERALDGLLELLPAGAWLDHT 273
LYGSFLPGTQ+NL+RALDGL++ LP+ W DH+
Sbjct 242 LYGSFLPGTQENLQRALDGLVDFLPSKTWFDHS 274
>gi|126432665|ref|YP_001068356.1| hypothetical protein Mjls_0052 [Mycobacterium sp. JLS]
gi|126232465|gb|ABN95865.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=282
Score = 385 bits (989), Expect = 4e-105, Method: Compositional matrix adjust.
Identities = 185/273 (68%), Positives = 218/273 (80%), Gaps = 0/273 (0%)
Query 1 MTGPSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQ 60
M G AA D+VV VEVTIDGMLVIADR+ DFP +LGIR NIPQ DLR IVW+Q
Sbjct 2 MAGAPAASSGTHYDDVVAVEVTIDGMLVIADRMSASDFPPSLGIRLNIPQPDLRKIVWDQ 61
Query 61 VQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRH 120
V RDLT QGVL+ +G+P P VA MV+TL R DR LEGRWWRRD+GG MVRFVVCR+GDRH
Sbjct 62 VARDLTEQGVLNFYGDPHPEVAAMVDTLSRSDRVLEGRWWRRDLGGKMVRFVVCRKGDRH 121
Query 121 VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYG 180
V+AARD +MLVLQ +APQ+GLA MVT VLG A PA+VEPLTGVA +LA+C TA++L YG
Sbjct 122 VVAARDDEMLVLQRIAPQIGLANMVTTVLGTAPPADVEPLTGVAAKLAQCRTANELQAYG 181
Query 181 IAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD 240
IA SAR YA+I+ P WVE+ A++RHPGGT T TD AAGVLDS GR+VS+PRRV G+
Sbjct 182 IALTSARAYADIISEPASWVELTATERHPGGTQTTTDVAAGVLDSPHGRIVSIPRRVSGE 241
Query 241 LYGSFLPGTQQNLERALDGLLELLPAGAWLDHT 273
LYGSFLPGTQ+NL+RALDGL++ LP+ W DH+
Sbjct 242 LYGSFLPGTQENLQRALDGLVDFLPSKTWFDHS 274
>gi|120401098|ref|YP_950927.1| hypothetical protein Mvan_0070 [Mycobacterium vanbaalenii PYR-1]
gi|119953916|gb|ABM10921.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=283
Score = 377 bits (969), Expect = 8e-103, Method: Compositional matrix adjust.
Identities = 182/259 (71%), Positives = 213/259 (83%), Gaps = 0/259 (0%)
Query 14 DNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDL 73
D+VVGVEVTIDGMLVIAD LHLVDFP++LGIRPNIP ED R IVW+QV RDLTAQG+L
Sbjct 15 DDVVGVEVTIDGMLVIADLLHLVDFPLSLGIRPNIPYEDQRKIVWDQVTRDLTAQGILTA 74
Query 74 HGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ 133
+G+P P VA MV+ L RPDRTL+ RWWRRD+GG MVRFVVCR+GDRHV+AARD DMLVLQ
Sbjct 75 YGDPHPEVAAMVDALSRPDRTLDCRWWRRDLGGKMVRFVVCRKGDRHVVAARDEDMLVLQ 134
Query 134 LVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYGIAPASARVYAEIV 193
VAPQ+GLA MV V+G A A+VEPLTG+AT+LAE TA Q+ YG P SA++YAE
Sbjct 135 RVAPQIGLAAMVGVVIGGAPAADVEPLTGIATKLAEARTAEQIGAYGQPPLSAKIYAEAT 194
Query 194 GNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGDLYGSFLPGTQQNL 253
NP WVEI A++RHPGGT +Q AGVLDS GR+VS+PR+VGG+LYGSFLPGTQ+NL
Sbjct 195 ANPDSWVEITAAERHPGGTYSQAGVGAGVLDSAHGRIVSIPRQVGGELYGSFLPGTQENL 254
Query 254 ERALDGLLELLPAGAWLDH 272
+RALDGL+E LP+ AW DH
Sbjct 255 QRALDGLVEFLPSRAWFDH 273
>gi|145221370|ref|YP_001132048.1| hypothetical protein Mflv_0775 [Mycobacterium gilvum PYR-GCK]
gi|145213856|gb|ABP43260.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=308
Score = 370 bits (951), Expect = 1e-100, Method: Compositional matrix adjust.
Identities = 180/273 (66%), Positives = 212/273 (78%), Gaps = 1/273 (0%)
Query 1 MTGP-SAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWE 59
MT P A G D+VVGVE+TIDGMLVIAD LHLVDFP+ LGIRPNIP E+ R +VW+
Sbjct 26 MTAPLFADGEPTHYDDVVGVELTIDGMLVIADLLHLVDFPLALGIRPNIPYEEQRKVVWD 85
Query 60 QVQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDR 119
QV DLTAQG+L +G+P P VA MV+ L R DRTL+ RWWRRD+GG MVRFVVCR+GDR
Sbjct 86 QVTHDLTAQGILTAYGDPHPEVAAMVDALSRADRTLDCRWWRRDVGGKMVRFVVCRKGDR 145
Query 120 HVIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQY 179
HV+AARD DMLVLQ VAPQ+GLA MV V+G PANVEPLTG+A ELAE +A QL +Y
Sbjct 146 HVVAARDDDMLVLQRVAPQIGLAAMVNVVIGAGAPANVEPLTGLAAELAEARSAEQLGRY 205
Query 180 GIAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGG 239
G P SA++YAE +P WVEI A++RHPGGT +Q AGVLDS GR+VS+PRRV G
Sbjct 206 GQPPHSAKIYAEASASPDSWVEITANERHPGGTYSQAGVGAGVLDSSHGRIVSIPRRVNG 265
Query 240 DLYGSFLPGTQQNLERALDGLLELLPAGAWLDH 272
DLYGSFLPGT +NL+RALDGL+E LP+ W +H
Sbjct 266 DLYGSFLPGTPENLQRALDGLIEFLPSATWFEH 298
>gi|315441746|ref|YP_004074625.1| hypothetical protein Mspyr1_00560 [Mycobacterium sp. Spyr1]
gi|315260049|gb|ADT96790.1| hypothetical protein Mspyr1_00560 [Mycobacterium sp. Spyr1]
Length=283
Score = 367 bits (943), Expect = 9e-100, Method: Compositional matrix adjust.
Identities = 181/281 (65%), Positives = 217/281 (78%), Gaps = 2/281 (0%)
Query 1 MTGP-SAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWE 59
MT P A G D+VVGVE+TIDGMLV+AD LHLVDFP+ LGIRPNIP E+ R +VW+
Sbjct 1 MTTPLFADGEPTHYDDVVGVELTIDGMLVVADLLHLVDFPLALGIRPNIPYEEQRKVVWD 60
Query 60 QVQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDR 119
QV DLTAQG+L +G+P P VA MV+ L R DRTL+ RWWRRD+GG MVRFVVCR+G+R
Sbjct 61 QVTHDLTAQGILTAYGDPHPEVAAMVDALSRADRTLDCRWWRRDVGGKMVRFVVCRKGER 120
Query 120 HVIAARDGDMLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQY 179
HV+AARD DMLVLQ VAPQ+GLA MV V+G PANVEPLTG+ATELA+ +A QL +Y
Sbjct 121 HVVAARDDDMLVLQRVAPQIGLAAMVNVVIGAGAPANVEPLTGLATELAQARSAEQLGRY 180
Query 180 GIAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGG 239
G P SA+VYAE +P WVEI A++RHPGGT +Q AGVLDS GR+VS+PRRV G
Sbjct 181 GQPPHSAKVYAEASASPDSWVEITANERHPGGTYSQAGVGAGVLDSSHGRIVSIPRRVNG 240
Query 240 DLYGSFLPGTQQNLERALDGLLELLPAGAWLDHTSDHAQAS 280
+LYGSFLPGT +NL+RALDGL+E LP+ W +H D A+ S
Sbjct 241 ELYGSFLPGTPENLQRALDGLIEFLPSATWFEH-QDAAEGS 280
>gi|213855495|ref|ZP_03383735.1| hypothetical protein SentesT_16190 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length=84
Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)
Query 75 GEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQL 134
GEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQL
Sbjct 1 GEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQL 60
Query 135 VAPQVGLAGMVTAVLGPAEPANVE 158
VAPQVGLAGMVTAVLGPAEPANVE
Sbjct 61 VAPQVGLAGMVTAVLGPAEPANVE 84
>gi|2370286|emb|CAA75206.1| hypothetical protein [Mycobacterium leprae]
Length=338
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/148 (56%), Positives = 108/148 (73%), Gaps = 1/148 (0%)
Query 129 MLVLQLVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLTQYGIAPASARV 188
ML+LQL+A Q+ A MVT +L PAE ANV+PLTG+A +LAE TA+QL G+ P+SA +
Sbjct 1 MLILQLMALQISQASMVTTMLDPAESANVQPLTGIAKKLAEYRTAAQLVGQGVQPSSACI 60
Query 189 YAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRL-VSLPRRVGGDLYGSFLP 247
Y + + NP+ W+ I+ +QR PGGTTT TD A + G++ V+LPRRVG +LYGSFL
Sbjct 61 YGKFLRNPSNWLAIIVTQRPPGGTTTYTDTAVRGSRLRAGQVGVALPRRVGNELYGSFLS 120
Query 248 GTQQNLERALDGLLELLPAGAWLDHTSD 275
G QQNL+ A + L+ELLPAG+WLDH D
Sbjct 121 GIQQNLQVAFNNLMELLPAGSWLDHVYD 148
>gi|54022788|ref|YP_117030.1| hypothetical protein nfa8210 [Nocardia farcinica IFM 10152]
gi|54014296|dbj|BAD55666.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=264
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/277 (34%), Positives = 137/277 (50%), Gaps = 45/277 (16%)
Query 21 VTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQR----DLTAQGVLDLHGE 76
+T DG+L +A+RL + P+ LGI P D W QR DLT G++D +GE
Sbjct 4 LTNDGVLALAERLGIQTMPLVLGIGPRQQTYD----AWTAAQRRAVADLTGAGLIDGYGE 59
Query 77 PQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQLV- 135
P +A+ + L +PDR L R + D G R + RG+RH +A R GD + ++
Sbjct 60 VDPELADAMYVLAQPDRELVARVYPGD--GAPTRLCLALRGERHALALRRGDDIRIEPAW 117
Query 136 APQVG--LAGMVTAVLGPAEPANVEPLTGVATELAECTTASQLT---------------- 177
+ + G L + LGPAEPA+V P + A ELAE +A++ +
Sbjct 118 SDESGSALVAALLRALGPAEPADVAPFSAPAAELAERLSAARTSADFTDAVYALGVAERD 177
Query 178 --QYGIAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPR 235
+YG+A S R YAEIV + H G TT+ AA V ++ GR+V P
Sbjct 178 APRYGLAFESCRAYAEIV-----------AYAHVDGVTTRPPCAAVVYETGRGRIVVAP- 225
Query 236 RVGGD--LYGSFLPGTQQNLERALDGLLELLPAGAWL 270
+ D ++ + PGT + +A+ GL+E LP G WL
Sbjct 226 GIAPDQQVWSTVTPGTDHRVAQAISGLIETLPGGRWL 262
>gi|317506950|ref|ZP_07964720.1| hypothetical protein HMPREF9336_01091 [Segniliparus rugosus ATCC
BAA-974]
gi|316254758|gb|EFV14058.1| hypothetical protein HMPREF9336_01091 [Segniliparus rugosus ATCC
BAA-974]
Length=274
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/231 (30%), Positives = 104/231 (46%), Gaps = 21/231 (9%)
Query 54 RDIVWEQVQRDLTAQGVLDLHGEP-QPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFV 112
R W+ + +L +G+L GE P + +E L P+R L GR R++ M+R
Sbjct 45 RSKEWKLMNEELNEKGIL--RGETVHPELQLWLEALDHPERELSGRIKRQE---TMLRMA 99
Query 113 VCRRGDRHVIAARDGDMLVLQLVAPQV-----GLAGMVTAVLGPAEPANVEPLTGVATEL 167
+ RRG H +A R GD +V+Q + LA V AVLG + ++ +
Sbjct 100 LVRRGRTHALAIRYGDEVVIQDFEYEAEKSAGQLAKPVLAVLGEGVVPDFNRVSAPTQSI 159
Query 168 AEC--------TTASQLTQYGIAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAA 219
+ + L + G + A+V A I+ N E V +R G + A
Sbjct 160 VDSMPRNIDLDAVFTSLLRVGASQKDAKVLATIMANVEVQSEFVVHEREEG-PRVRGKGA 218
Query 220 AGVLDSKLGRLVSLPRRVG-GDLYGSFLPGTQQNLERALDGLLELLPAGAW 269
+ DS GR VS P G G+++ +F PGT + +A L+ELLP+ W
Sbjct 219 VSIFDSPKGRFVSSPSVAGDGEIWSTFTPGTDHRISQAFTSLIELLPSEKW 269
>gi|296393779|ref|YP_003658663.1| hypothetical protein Srot_1368 [Segniliparus rotundus DSM 44985]
gi|296180926|gb|ADG97832.1| hypothetical protein Srot_1368 [Segniliparus rotundus DSM 44985]
Length=274
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/234 (29%), Positives = 103/234 (45%), Gaps = 25/234 (10%)
Query 58 WEQVQRDLTAQGVLDLHGEP-QPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRR 116
W+ + +L +G+L GE P + +E L PDR L GR R G M+R + RR
Sbjct 49 WDLMNAELNEKGIL--RGEAVHPELQAWLEALDHPDRELSGRVKR---GESMLRMALVRR 103
Query 117 GDRHVIAARDGDMLVLQLV-------APQVGLAGMVTAVLGPAEPANVEPLTGVATELAE 169
GD H +A R GD +V+Q + Q+ A +V VLG + ++ + +
Sbjct 104 GDVHALAIRYGDEVVIQNFEYDAQKSSGQLARAALV--VLGEGVIPDFNRVSAPTQSIVD 161
Query 170 C--------TTASQLTQYGIAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAG 221
+ L + G + A+V A I+ E V +R G + A
Sbjct 162 AMPRNVDLDAVYTSLLRVGASQKDAKVLATIMATVEVQSEFVVYERG-DGPRARGKGAVS 220
Query 222 VLDSKLGRLVSLPRRVG-GDLYGSFLPGTQQNLERALDGLLELLPAGAWLDHTS 274
V DS GR VS P G+++ + PGT + +A + L+ELLP+ W S
Sbjct 221 VFDSPKGRFVSSPSVASDGEIWSTMTPGTDHRISQAFNSLIELLPSEQWWPEAS 274
>gi|2370287|emb|CAA75207.1| hypothetical protein [Mycobacterium leprae]
Length=122
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/117 (44%), Positives = 64/117 (55%), Gaps = 14/117 (11%)
Query 1 MTGPSAAGRAGTADNVVGVEVTIDG------MLVIADRLHLVDFPVTLGIRPNIPQEDLR 54
M+GP A+GRAG ++VVGVEVT DG MLV+ DRLHLV FP LGIR N D
Sbjct 1 MSGPLASGRAGLVNDVVGVEVTTDGMLTVCYMLVVTDRLHLVAFPTALGIRIN-DSSDRN 59
Query 55 DIVWEQVQRDLT--AQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMV 109
W ++T + D +G+P P +A M +T RPDR WR G M+
Sbjct 60 YQPWSGNGCNVTLPPREFRDANGQPYPKLAAMADTSNRPDRE-----WRLGSGVAML 111
>gi|262203518|ref|YP_003274726.1| hypothetical protein Gbro_3645 [Gordonia bronchialis DSM 43247]
gi|262086865|gb|ACY22833.1| hypothetical protein Gbro_3645 [Gordonia bronchialis DSM 43247]
Length=275
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/222 (29%), Positives = 104/222 (47%), Gaps = 15/222 (6%)
Query 60 QVQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDR 119
++ + + G++ GEP ++ L P+R +E R D G R + R G+
Sbjct 57 ELHQRIAETGLVCSDGEPTTLCDTVIRVLCAPERMIEMRTIA-DAG--FRRICLARSGND 113
Query 120 HVIAARDGDMLVLQLVAPQ-VG-LAGMVTAVLGPAEPANVEPLTGVATELAE----CTTA 173
HV+A RDG + L +V+P VG L ++ A L P + ++ A EL + C +
Sbjct 114 HVLAVRDGARIELSVVSPTGVGELGALLRARLPERAPCVFDAISHPAAELLDRLGRCRSG 173
Query 174 SQLTQ----YGIAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR 229
+T G +P A V + + EIVA H G TQ+ A +LD+ GR
Sbjct 174 LDMTDALHAMGASPGDAMVVSAAFASCRVQTEIVAVA-HDAGVLTQSSGAVAILDTDKGR 232
Query 230 LVSLPRRV-GGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 270
+VS P + G ++ + PG+ + +A+ L+E LP G W
Sbjct 233 IVSSPSKSPDGRVWTTLSPGSGHRIAQAIGLLIETLPDGRWF 274
>gi|317506399|ref|ZP_07964206.1| hypothetical protein HMPREF9336_00576 [Segniliparus rugosus ATCC
BAA-974]
gi|316255305|gb|EFV14568.1| hypothetical protein HMPREF9336_00576 [Segniliparus rugosus ATCC
BAA-974]
Length=302
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/293 (28%), Positives = 121/293 (42%), Gaps = 22/293 (7%)
Query 1 MTGPSAAGRAGTADNV-VGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWE 59
+ PS A AD V E+T++ + +RL FP L I E R +
Sbjct 3 LGAPSGVRAASRADRPPVAAELTVEQAWFLGERLGAGAFPWALAITAPYQDERQRVRLGA 62
Query 60 QVQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRW------WRRDIGGV---MVR 110
Q +DL GV+ G P+VA + T+ RPDR LE R+ D G ++R
Sbjct 63 QHAKDLAEVGVVGADGSVDPSVAGWIHTVCRPDRWLELRYVVASPHADGDPGSAHPKLLR 122
Query 111 FVVCRRGDRHVIAARDGDMLVLQLVAPQ--VGLAGMVTAVLGPAEPANVEPLTGVATELA 168
V R + V+A R+ ++ + L V A L PA T A A
Sbjct 123 GFVARTQSQTVVALRNAQLVAFTAIEADEPSALVPSVVAGLSQRAPAQFPEFTLPAEAGA 182
Query 169 ECTTASQ--------LTQYGIAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAA 220
+ + + + GI PA+ V + +VE+VA QR G T+
Sbjct 183 KADEKLRSGASLDDVVERLGIPPAARPVVQAALRGRRSYVEVVAGQRD-GAAKRSTEVGV 241
Query 221 GVLDSKLGRLVSLPRRVGGDLY-GSFLPGTQQNLERALDGLLELLPAGAWLDH 272
V+D+ GR++ PRR ++ +F PGT + A+D L LP G W +
Sbjct 242 SVVDTGAGRVLVSPRRAADGVWLSTFAPGTPFAIAVAVDQLTAELPEGRWFPN 294
>gi|169629313|ref|YP_001702962.1| hypothetical protein MAB_2227c [Mycobacterium abscessus ATCC
19977]
gi|169241280|emb|CAM62308.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=287
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 79/272 (30%), Positives = 121/272 (45%), Gaps = 23/272 (8%)
Query 18 GVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEP 77
VE+T+D +AD L FP L + E R Q ++LT G+L+ G
Sbjct 10 AVELTVDQAWFLADTLSAGTFPWVLAVTVPFRDEAQRAGFNAQRVQELTRAGILEPDGTV 69
Query 78 QPTVAEMVETLGRPDRTLEGRWWR--RDIGGVMVRFVVCRRGD----RHVIAARDGDMLV 131
P VA + T+ RPDR LE R+ + VM R ++ R+ + V++ R+ ++
Sbjct 70 DPAVAGWIRTVCRPDRWLELRYVAAGSENPDVM-RGIIARKQSQGRAQTVVSLRNAHLIT 128
Query 132 LQLVAPQVGLAGMVTAVLG-----PAEPANVEPLTGVATELAE-----CTTASQLTQYGI 181
+V A + + V G PA T V + E + A + G+
Sbjct 129 FTVVDADDSSALVPSVVAGLRWRAPARFPEFTLPTNVGAKADEQLRSGASLADVMGYLGV 188
Query 182 APASARVY-AEIVGNPTGWVEIVASQRHPGGTTTQT-DAAAGVLDSKLGRLVSLPRRVG- 238
PA+ V + VGN +VE+VA QR TT QT + V+D+ GR++ P R G
Sbjct 189 PPAAQNVVESAFVGN-RNYVEVVAGQRD--STTQQTSEVGISVVDTSAGRILVSPHRAGD 245
Query 239 GDLYGSFLPGTQQNLERALDGLLELLPAGAWL 270
G +F PG + A++ L+ LP G W
Sbjct 246 GTWLSTFAPGAPFAIAVAVEQLMATLPNGHWF 277
>gi|118470815|ref|YP_885033.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
gi|118172102|gb|ABK72998.1| putative DNA-binding protein [Mycobacterium smegmatis str. MC2
155]
Length=293
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/264 (26%), Positives = 118/264 (45%), Gaps = 14/264 (5%)
Query 18 GVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEP 77
VE+T D +AD L +P L I P R +LT GV++ G
Sbjct 5 AVELTTDQAWCLADVLGAGSYPWVLAITPPYSDHSQRSAFLAAQSAELTRMGVVNSAGAV 64
Query 78 QPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQL--V 135
P VA+ + T+ R + L+ R+ G ++R +V RR + V+A R+ ++ +
Sbjct 65 DPRVAQWITTVCRATQWLDLRF--VSGPGDLLRGMVARRSEETVVALRNAQLVTFTAMDI 122
Query 136 APQVGLAGMVTAVLGPAEPANVEPLTGVAT-------ELAECTTASQLTQYGIAPASARV 188
Q L ++TA L +PA + A ++ +++ ++ P SAR
Sbjct 123 GHQHALVPVLTAGLSGRKPARFDDFALPAAAGARADEQIRNGAPLAEVLEFLGVPPSARP 182
Query 189 YAEIVGN-PTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRR-VGGDLYGSFL 246
E V + +VEIVA + H G T+ ++D+ GR++ P + G+ +F
Sbjct 183 LVESVFDGRRTYVEIVAGE-HRDGHRVTTEVGVSIIDTPHGRILVHPTKAFDGEWISTFT 241
Query 247 PGTQQNLERALDGLLELLPAGAWL 270
PG+ + A++ L LP+G+W
Sbjct 242 PGSADAIAMAVERLTASLPSGSWF 265
>gi|15828362|ref|NP_302625.1| DNA-binding protein [Mycobacterium leprae TN]
gi|221230839|ref|YP_002504255.1| putative DNA-binding protein [Mycobacterium leprae Br4923]
gi|13093792|emb|CAC32061.1| possible DNA-binding protein [Mycobacterium leprae]
gi|219933946|emb|CAR72629.1| possible DNA-binding protein [Mycobacterium leprae Br4923]
Length=289
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/270 (27%), Positives = 117/270 (44%), Gaps = 18/270 (6%)
Query 18 GVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEP 77
VE+T+D IA+ + FP L I R E+ +LT G+L
Sbjct 7 AVELTVDHAWFIAEVIGAGSFPWVLAITTPYRDAGERSAFVERQVDELTRMGLLVAENSV 66
Query 78 QPTVAEMVETLGRPDRTLEGRWWRRDIG---GVMVRFVVCRRG---DRHVIAARDGDMLV 131
PTVA+ + + PDR L+ R+ R ++R +V +R D+ V+A R ++
Sbjct 67 DPTVADWIRVVCFPDRWLDLRYLRSTSAVGDSELLRGMVAQRAGVSDKTVVALRSAQLIT 126
Query 132 LQL--VAPQVGLAGMVTAVLGPAEPANVEPLT-----GVATE--LAECTTASQLTQYGIA 182
+ + L ++ A L PA + + GV + L T+ +++ Y
Sbjct 127 FTAMDIDDPLRLVPILGAGLAQRPPARFDEFSMPMRVGVRADERLRSGTSLAEVADYLGI 186
Query 183 PASAR-VYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRR-VGGD 240
P SA+ V + P +VEIVA R G T T+ ++D+ GR++ P R G+
Sbjct 187 PKSAQPVVESVFSGPRSYVEIVAGCRRDGKHAT-TEVGMSIVDTTTGRVLVNPSRAFDGE 245
Query 241 LYGSFLPGTQQNLERALDGLLELLPAGAWL 270
+F PGT + ++ L LP G W
Sbjct 246 WVSTFSPGTPFAIAVGIEQLTATLPEGQWF 275
>gi|240172731|ref|ZP_04751390.1| hypothetical protein MkanA1_25677 [Mycobacterium kansasii ATCC
12478]
Length=301
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 115/275 (42%), Gaps = 24/275 (8%)
Query 19 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEPQ 78
VE+T+D IA+ + FP L I P R +++ + +LT G++ G
Sbjct 14 VELTVDNAWFIAESVGAGSFPWVLAITPPYTDSAQRSAFFDRQKDELTGLGLMSPDGTVN 73
Query 79 PTVAEMVETLGRPDRTLEGRWW---RRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQLV 135
VA+ ++ + PDR L+ R+ + G ++R +V RR +R + +V
Sbjct 74 SAVADWIKVVCFPDRWLDLRYIGPASAEGSGELLRGIVARRVGAGGKTSRKFNTVVALRS 133
Query 136 APQVGLAGM-------VTAVLGPA----EPANVEPLT------GVATE-LAECTTASQLT 177
A V M + VLG PA E + A E L ++
Sbjct 134 AQLVTFTAMDIDDPRALVPVLGVGLSQRPPARFEEFSMPMRVGARADERLRSGAPLEEVL 193
Query 178 QYGIAPASARVYAE-IVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSLPR 235
Y P SAR E + P +VEIVA G TT TD ++D+ GR LVS R
Sbjct 194 DYLGIPTSARPVVEAVFSGPRSYVEIVAGCNRDGQHTT-TDVGLSIVDTTAGRVLVSPSR 252
Query 236 RVGGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 270
G+ +F PGT A++ L+ LP G W
Sbjct 253 AFDGEWVSTFSPGTAFATAVAIEQLIANLPEGQWF 287
>gi|343927680|ref|ZP_08767148.1| hypothetical protein GOALK_097_01020 [Gordonia alkanivorans NBRC
16433]
gi|343762321|dbj|GAA14074.1| hypothetical protein GOALK_097_01020 [Gordonia alkanivorans NBRC
16433]
Length=268
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/257 (28%), Positives = 113/257 (44%), Gaps = 26/257 (10%)
Query 29 IADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEPQPTVAEMVETL 88
+ DR + +PV L + E + + + + A ++D H EP P +A ++ L
Sbjct 20 LGDRFGVQTWPVVLDMPVGAADETAQRLADRESDAAIAALDLVD-HDEPVPWLATVLRVL 78
Query 89 GRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQL--VAPQVGLAGMVT 146
RP+R +E R + GV R + RRG HV+A R GD L L + VA +A ++
Sbjct 79 SRPEREIEMRGFTE--TGVR-RICLARRGYEHVLAERAGDRLDLSVVEVADLDAVADLLR 135
Query 147 AVLGPAEPANVEPL-------------TGVATELAECTTASQLTQYGIAPASARVYAEIV 193
+ A +G ATE+ + L G + A V +
Sbjct 136 SRFDDAAACEFTSFSVPTDDLVDGLGRSGSATEITDA-----LYTLGAPLSDAVVISSAF 190
Query 194 GNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRV-GGDLYGSFLPGTQQN 252
+ EIVAS + G +Q+ A V D+ GR+VS P + G ++ + PG+
Sbjct 191 ASCRVRTEIVASA-NEDGRFSQSSGALAVFDTARGRIVSSPSKSPDGRVWTTLSPGSGHR 249
Query 253 LERALDGLLELLPAGAW 269
+ +A+ L+E LP G W
Sbjct 250 IAQAVRLLIETLPDGTW 266
>gi|296165971|ref|ZP_06848429.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898673|gb|EFG78221.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=291
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/285 (27%), Positives = 119/285 (42%), Gaps = 27/285 (9%)
Query 18 GVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEP 77
VE+T+D IA+ + FP L I R E+ + +LT G++ G
Sbjct 7 AVELTVDHAWFIAETIGAGSFPWVLAITSPYTDAAHRQAFLERQRAELTELGLVSQGGAV 66
Query 78 QPTVAEMVETLGRPDRTLEGRWW--RRDIG---GVMVRFVVCRR---GDRHVIAARDGDM 129
P VA+ + + P+R L+ R+ R+ G G M+R +V +R + ++A R +
Sbjct 67 NPAVADWIRVVCFPERWLDLRYVGPAREPGTGTGEMLRGIVAQRPATTAKTIVALRSAQL 126
Query 130 LVLQL--VAPQVGLAGMVTAVLGPAEPANVEPLTGVA-------TELAECTTASQLTQYG 180
+ + L ++ L PA + + A L +++ Y
Sbjct 127 ITFTAMDIDDPRALVPVLGVGLAQQPPARFDEFSMPARVGARADERLRSGAPLAEVVDYL 186
Query 181 IAPASARVYAEIVGN-PTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSLPRRVG 238
P SAR E V N P +VEIVA H G T+ ++D+ GR LVS R
Sbjct 187 GIPQSARAVVESVFNGPRSYVEIVAGC-HRDGRHATTEVGMSIVDAAAGRVLVSPSRAFD 245
Query 239 GDLYGSFLPGTQQNLERALDGLLELLPAGAWL-------DHTSDH 276
G+ +F PGT + A++ L LLP W D T+ H
Sbjct 246 GEWVSTFAPGTPFAIALAIEQLTALLPDAEWFPGHRLARDFTAQH 290
>gi|120401444|ref|YP_951273.1| putative DNA-binding protein [Mycobacterium vanbaalenii PYR-1]
gi|119954262|gb|ABM11267.1| putative DNA-binding protein [Mycobacterium vanbaalenii PYR-1]
Length=286
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/268 (30%), Positives = 114/268 (43%), Gaps = 22/268 (8%)
Query 18 GVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLR-DIVWEQVQRDLTAQGVLDLHGE 76
VE+T + +AD L FP L I P R EQ +R LT GV+D
Sbjct 5 AVELTAEAAWFLADTLGAGTFPWVLAITPPYSDRSQRAQFESEQAER-LTRMGVMDADRA 63
Query 77 PQPTVAEMVETLGRPDRTLEGRWWRRDIG--GVMVRFVVCRRGDRHVIAARDGDMLVL-- 132
VA + + RP + LE R+ +G G M+R ++ R R V+A R G ++ L
Sbjct 64 VDAAVARWIRLVCRPTQWLELRF----VGARGAMLRGIIARDASRTVVALRSGGLITLTE 119
Query 133 -QLVAPQVGLAGMVTAVLGPAEPANVEPLTGVAT-------ELAECTTASQLTQY-GIAP 183
Q+ PQ L ++T L PA + A ++ + L Y G+ P
Sbjct 120 MQIDHPQ-ALVPVLTVGLSGRSPARFPEFSLPARVGAKADDQIRRGASVRDLLDYLGVPP 178
Query 184 ASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSLPRRVGGDLY 242
++ V +VEIVA RH G TD ++D+ GR LVS R G+
Sbjct 179 SARPVVVAAFEEARTYVEIVAG-RHRDGHRVSTDVGVSIVDTTAGRVLVSPTRARDGEWI 237
Query 243 GSFLPGTQQNLERALDGLLELLPAGAWL 270
+F PG + A++ L LP G W
Sbjct 238 STFAPGDPIAVATAVERLTAALPDGPWF 265
>gi|315442104|ref|YP_004074983.1| hypothetical protein Mspyr1_04360 [Mycobacterium sp. Spyr1]
gi|315260407|gb|ADT97148.1| hypothetical protein Mspyr1_04360 [Mycobacterium sp. Spyr1]
Length=290
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 75/273 (28%), Positives = 115/273 (43%), Gaps = 23/273 (8%)
Query 19 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEPQ 78
VE++ +A+ L +P L I P R + L G++
Sbjct 6 VELSAASAWFLAEELGAGSYPWVLAITPPYSDVSARGPFEREQTEKLRGAGIMTAERTVD 65
Query 79 PTVAEMVETLGRPDRTLEGRWWRRDIG--GVMVRFVVCRRGDRHVIAARDGDMLV---LQ 133
P VA + + RP + LE R+ +G G ++R V+ R G VIA R G ++ L
Sbjct 66 PAVARWIRRVCRPTQWLELRF----VGSRGAVLRGVLARDGAGTVIALRSGGLITLTELD 121
Query 134 LVAPQVGLAGMVTAVLGPAEPANVEPLTGVA-------TELAECTTASQLTQY-GIAPAS 185
+ P+ L +VTA L PA + + A ++ + L Y GI P++
Sbjct 122 IDHPE-ALVPVVTAGLSGRAPARFDGFSLPARVGAKADEQIRKGAAVGGLLDYLGIPPSA 180
Query 186 ARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRV-GGDLYGS 244
V + +VEIVA Q H G TD V+D+ LGR++ P + G+ +
Sbjct 181 RPVVVAAFEDSRTYVEIVAGQ-HRDGHRVSTDVGVSVVDTVLGRVLVCPAKARDGEWIST 239
Query 245 FLPGTQQNLERALDGLLELLPAGAWLDHTSDHA 277
F PG + A++ L LP G W DHA
Sbjct 240 FAPGDPVAIAAAVERLTAALPDGPWF---PDHA 269
>gi|145220926|ref|YP_001131604.1| putative DNA-binding protein [Mycobacterium gilvum PYR-GCK]
gi|145213412|gb|ABP42816.1| putative DNA-binding protein [Mycobacterium gilvum PYR-GCK]
Length=290
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 77/273 (29%), Positives = 115/273 (43%), Gaps = 23/273 (8%)
Query 19 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEPQ 78
VE++ +A+ L +P L I P R + L G++
Sbjct 6 VELSAASAWFLAEELGAGSYPWVLAITPPYSDVSARGPFEREQTEKLRGAGIMTAERTVD 65
Query 79 PTVAEMVETLGRPDRTLEGRWWRRDIG--GVMVRFVVCRRGDRHVIAARDGDMLV---LQ 133
P VA + + RP + LE R+ +G G ++R V+ R G VIA R G ++ L
Sbjct 66 PAVARWIRRVCRPTQWLELRF----VGSRGAVLRGVLARDGAGTVIALRSGGLITLTELD 121
Query 134 LVAPQVGLAGMVTAVLGPAEPANVEPLTGVA-------TELAECTTASQLTQY-GIAPAS 185
+ P+ L +VTA L PA + + A ++ + L Y GI P++
Sbjct 122 IDHPE-ALVPVVTAGLSGRAPARFDGFSLPARVGAKADEQIRKGAAVGGLLDYLGIPPSA 180
Query 186 ARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSLPRRVGGDLYGS 244
V + +VEIVA Q H G TD V+D+ LGR LVS + G+ +
Sbjct 181 RPVVVAAFEDSRTYVEIVAGQ-HRDGHRVSTDVGVSVVDTVLGRVLVSPAKARDGEWIST 239
Query 245 FLPGTQQNLERALDGLLELLPAGAWLDHTSDHA 277
F PG + A++ L LP G W DHA
Sbjct 240 FAPGDPVAIAAAVERLTAALPDGPWF---PDHA 269
>gi|118465963|ref|YP_883987.1| hypothetical protein MAV_4864 [Mycobacterium avium 104]
gi|118167250|gb|ABK68147.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=293
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 121/275 (44%), Gaps = 23/275 (8%)
Query 18 GVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEP 77
VE+T+D IA+ + FP L I R+ ++ + +L+ G++ G
Sbjct 7 AVELTVDHAWFIAETIGAGSFPWVLAITCPYRDAAERNAFLDRQRAELSEMGLVSDAGLI 66
Query 78 QPTVAEMVETLGRPDRTLEGRWW--RRDI----GGVMVRFVVCRR---GDRH--VIAARD 126
P VAE ++ + P R L+ R+ +D G ++R +V +R G R V+A R
Sbjct 67 NPAVAEWIKVVCFPQRWLDLRYVGPAKDTGEGGGSELLRGIVAQRDGAGGRSITVVALRS 126
Query 127 GDMLVLQL--VAPQVGLAGMVTAVLGPAEPANVEPL---TGVATELAECTTA----SQLT 177
++ + L ++T L PA+ + T V E A S++
Sbjct 127 AQLITFTAMDIDDPRALVPVLTVGLAQRAPASFDEFSMPTRVGARADERLRAGAPLSEVL 186
Query 178 QYGIAPASARVYAEIVGN-PTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSLPR 235
Y P SAR E V N P +VEIVA H G + T+ ++D++ GR LVS R
Sbjct 187 DYLGIPQSARPVVESVFNGPRSYVEIVAGC-HRDGRHSTTEVGMSIVDAREGRVLVSPSR 245
Query 236 RVGGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 270
G+ +F PGT + A++ L LLP W
Sbjct 246 AFDGEWVSTFSPGTPFAIAVAIEHLTALLPDDGWF 280
>gi|108797358|ref|YP_637555.1| putative DNA-binding protein [Mycobacterium sp. MCS]
gi|119866442|ref|YP_936394.1| putative DNA-binding protein [Mycobacterium sp. KMS]
gi|108767777|gb|ABG06499.1| putative DNA-binding protein [Mycobacterium sp. MCS]
gi|119692531|gb|ABL89604.1| putative DNA-binding protein [Mycobacterium sp. KMS]
Length=314
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/265 (28%), Positives = 113/265 (43%), Gaps = 16/265 (6%)
Query 18 GVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEP 77
VE+T +AD + P L + P QE R + L GVL G
Sbjct 5 AVELTAAQAWFVADAVGAGSLPWVLAVTPPYSQEADRAPFTAETVASLETLGVLSGDGVV 64
Query 78 QPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQLVA- 136
VA+ V + R ++ L+ R+ G ++R VV RR D+ V+A R ++ +A
Sbjct 65 DARVADWVRVVCRAEQWLDLRF--VSGRGALLRGVVARRADQTVVALRSRSLITFTRMAI 122
Query 137 --PQVGLAGMVTAVLGPAEPANVEPLTGVAT-------ELAECTTASQLTQY-GIAPASA 186
P L ++ A L PA T A ++ + T +++ + GI P++
Sbjct 123 DHPH-ALVPVLCAGLSGRAPARFAEFTLPAAVGARADEQIRQGTPLAEVLDFLGIPPSAR 181
Query 187 RVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSLPRRVGGDLYGSF 245
V +VEIVA + H G T V+D+ GR LVS R G+ +F
Sbjct 182 PVVEAAFDTSRTYVEIVAGE-HRDGHRVTTQVGVSVVDTTEGRVLVSPVRAFDGEWVSTF 240
Query 246 LPGTQQNLERALDGLLELLPAGAWL 270
PGT + A++ L LP+GAW
Sbjct 241 APGTPFAIAAAVERLTGSLPSGAWF 265
>gi|41409883|ref|NP_962719.1| hypothetical protein MAP3785 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398715|gb|AAS06335.1| hypothetical protein MAP_3785 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=293
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 120/275 (44%), Gaps = 23/275 (8%)
Query 18 GVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEP 77
VE+T+D IA+ FP L I R+ ++ + +L+ G++ G
Sbjct 7 AVELTVDHAWFIAETTGAGSFPWVLAITCPYRDAAERNAFLDRQRAELSEMGLVSDAGLI 66
Query 78 QPTVAEMVETLGRPDRTLEGRWW--RRDI----GGVMVRFVVCRR---GDRH--VIAARD 126
P VAE ++ + P R L+ R+ +D G ++R +V +R G R V+A R
Sbjct 67 NPAVAEWIKVVCFPQRWLDLRYVGPAKDTGEGGGSELLRGIVAQRDGAGGRSITVVALRS 126
Query 127 GDMLVLQL--VAPQVGLAGMVTAVLGPAEPANVEPL---TGVATELAECTTA----SQLT 177
++ + L ++T L PA+ + T V E A S++
Sbjct 127 AQLITFTAMDIDDPRALVPVLTVGLAQRAPASFDEFSMPTRVGARADERLRAGAPLSEVL 186
Query 178 QYGIAPASARVYAEIVGN-PTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSLPR 235
Y P SAR E V N P +VEIVA H G + T+ ++D++ GR LVS R
Sbjct 187 DYLGIPQSARPVVESVFNGPRSYVEIVAGC-HRDGRHSTTEVGMSIVDAREGRVLVSPSR 245
Query 236 RVGGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 270
G+ +F PGT + A++ L LLP W
Sbjct 246 AFDGEWVSTFSPGTPFAIAVAIEHLTALLPDDGWF 280
>gi|333988937|ref|YP_004521551.1| hypothetical protein JDM601_0297 [Mycobacterium sp. JDM601]
gi|333484905|gb|AEF34297.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=293
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/283 (28%), Positives = 121/283 (43%), Gaps = 30/283 (10%)
Query 11 GTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDL--RDIVWEQVQRDLTAQ 68
GT N E+T++ IA+ + FP L I +P D R + + +LT
Sbjct 4 GTEPN--AAELTVEQAWYIAETIGAGSFPWVLAI--TMPYTDAGERGAFMARQREELTRM 59
Query 69 GVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWRRDIGGV--MVRFVVCRRG------DRH 120
GV+ G VAE + + PDR L+ R+ GG M+R +V RR R
Sbjct 60 GVVSPDGTINAYVAEWIRVVCFPDRWLDLRYVGSPSGGADEMLRGIVARRDPGSAKPTRT 119
Query 121 VIAARDGDMLVLQLVAPQVGLAGMVTAVLGPA----EPANVEPLT-----GVATE--LAE 169
V+A R+ ++ A + + ++ VLG PA + T GV + L
Sbjct 120 VVALRNAQLVT--FTAMDIADSRLLVPVLGAGLRQRPPARFDEFTLPARVGVRADERLRA 177
Query 170 CTTASQLTQYGIAPASAR-VYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLG 228
++ Y PASAR V + P +VE+VA G T T+ ++D++ G
Sbjct 178 GAALGEVLDYLGIPASARPVVESVFAGPRSYVEVVAGCAQNGRHAT-TEVGMSLVDTEQG 236
Query 229 RLVSLPRR-VGGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 270
R++ P + G+ +F PGT A++ L LP G W
Sbjct 237 RILVTPSQAFDGEWVSTFRPGTDFATAVAIEELTATLPEGQWF 279
>gi|126432979|ref|YP_001068670.1| putative DNA-binding protein [Mycobacterium sp. JLS]
gi|126232779|gb|ABN96179.1| putative DNA-binding protein [Mycobacterium sp. JLS]
Length=314
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/265 (28%), Positives = 113/265 (43%), Gaps = 16/265 (6%)
Query 18 GVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEP 77
VE+T +AD + P L + P QE R + L GVL G
Sbjct 5 AVELTAAQAWFVADAVGAGSLPWVLAVTPPYSQEADRVPFTAETVAALETLGVLSGDGVV 64
Query 78 QPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQLVA- 136
VA+ V + R ++ L+ R+ G ++R VV RR D+ V+A R ++ +A
Sbjct 65 DARVADWVRVVCRAEQWLDLRF--VSGRGALLRGVVARRADQTVVALRSRSLITFTRMAI 122
Query 137 --PQVGLAGMVTAVLGPAEPANVEPLTGVAT-------ELAECTTASQLTQY-GIAPASA 186
P L ++ A L PA T A ++ + T +++ + GI P++
Sbjct 123 DHPH-ALVPVLCAGLSGRAPARFAEFTLPAAVGARADEQIRQGTPLAEVLDFLGIPPSAR 181
Query 187 RVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSLPRRVGGDLYGSF 245
V +VEIVA + H G T V+D+ GR LVS R G+ +F
Sbjct 182 PVVEAAFDTSRTYVEIVAGE-HRDGHRVTTQVGVSVVDTTEGRVLVSPVRAFDGEWVSTF 240
Query 246 LPGTQQNLERALDGLLELLPAGAWL 270
PGT + A++ L LP+GAW
Sbjct 241 APGTPFAIAAAVERLTGSLPSGAWF 265
>gi|145226134|ref|YP_001136788.1| hypothetical protein Mflv_5539 [Mycobacterium gilvum PYR-GCK]
gi|145218597|gb|ABP48000.1| hypothetical protein Mflv_5539 [Mycobacterium gilvum PYR-GCK]
Length=280
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/258 (29%), Positives = 115/258 (45%), Gaps = 17/258 (6%)
Query 18 GVEVTIDGMLVIADRLHLVDF-PVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGE 76
G E+++D + + L L+ P L + + ++ D + LT +G+L G
Sbjct 22 GFEISVDEAAYLVEYLDLIGLLPEVLAVYNPMTSAEMVDGWKAHQHQRLTERGILTSTGA 81
Query 77 PQPTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQLV- 135
P VAE + TL TL R M+R + R R V+A+R D+ ++Q V
Sbjct 82 -LPEVAEQMRTLAHSQETLAIRITPLQQADTMLRLAIATRYGRFVVASRTRDIFLVQSVP 140
Query 136 --APQVGLAGMVTAVLGPAEPANV-EPLTGVATELAECTTASQ------LTQYGIAPASA 186
A Q + + LG AEPA + + L ++ + AS LT+ GI P A
Sbjct 141 VNAWQDAVRMTLDTNLGTAEPAPLSQTLQLSVADVNKIGAASAGAVSDLLTEMGIHPRDA 200
Query 187 RVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRVGGD--LYGS 244
V PT EI A++R G ++ A +LD+ GR+++ P +G D + S
Sbjct 201 AVL-NAASTPTVATEITAARR-VDGIVRRSATAVTILDTTHGRVMAWP-HIGPDRSTWIS 257
Query 245 FLPGTQQNLERALDGLLE 262
+ G L A+ GLLE
Sbjct 258 YAAGEPHRLRTAIAGLLE 275
>gi|289445828|ref|ZP_06435572.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289418786|gb|EFD15987.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=294
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/277 (28%), Positives = 115/277 (42%), Gaps = 28/277 (10%)
Query 19 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDL--RDIVWEQVQRDLTAQGVLDLHGE 76
VE+T+D IA+ + FP L I +P D R ++ + +LT G+L G
Sbjct 7 VELTVDNAWFIAETIGAGTFPWVLAI--TMPYSDAAQRGAFVDRQRDELTRMGLLSPQGV 64
Query 77 PQPTVAEMVETLGRPDRTLEGRW---WRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ 133
P VA+ ++ + PDR L+ R+ D ++R +V R + + G+ +V
Sbjct 65 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 124
Query 134 LVAPQVGLAGM-------VTAVLG-------PAEPANVEPLTGVATELAECTTAS----Q 175
A V M + +LG PA T V E + +
Sbjct 125 RNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLGE 184
Query 176 LTQYGIAPASAR-VYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSL 233
+ Y PASAR V + P +VEIVA G TT T+ ++D+ GR LVS
Sbjct 185 VVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTT-TEVGLSIVDTSAGRVLVSP 243
Query 234 PRRVGGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 270
R G+ +F PGT + A+ L LP G W
Sbjct 244 SRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWF 280
>gi|15607430|ref|NP_214803.1| hypothetical protein Rv0289 [Mycobacterium tuberculosis H37Rv]
gi|15839675|ref|NP_334712.1| hypothetical protein MT0302 [Mycobacterium tuberculosis CDC1551]
gi|31791468|ref|NP_853961.1| hypothetical protein Mb0297 [Mycobacterium bovis AF2122/97]
71 more sequence titles
Length=295
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/277 (28%), Positives = 115/277 (42%), Gaps = 28/277 (10%)
Query 19 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDL--RDIVWEQVQRDLTAQGVLDLHGE 76
VE+T+D IA+ + FP L I +P D R ++ + +LT G+L G
Sbjct 8 VELTVDNAWFIAETIGAGTFPWVLAI--TMPYSDAAQRGAFVDRQRDELTRMGLLSPQGV 65
Query 77 PQPTVAEMVETLGRPDRTLEGRW---WRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ 133
P VA+ ++ + PDR L+ R+ D ++R +V R + + G+ +V
Sbjct 66 INPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRTGTGKTSNKTGNGVVAL 125
Query 134 LVAPQVGLAGM-------VTAVLG-------PAEPANVEPLTGVATELAECTTAS----Q 175
A V M + +LG PA T V E + +
Sbjct 126 RNAQLVTFTAMDIDDPRALVPILGVGLAHRPPARFDEFSLPTRVGARADERLRSGVPLGE 185
Query 176 LTQYGIAPASAR-VYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSL 233
+ Y PASAR V + P +VEIVA G TT T+ ++D+ GR LVS
Sbjct 186 VVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTT-TEVGLSIVDTSAGRVLVSP 244
Query 234 PRRVGGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 270
R G+ +F PGT + A+ L LP G W
Sbjct 245 SRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWF 281
>gi|254777304|ref|ZP_05218820.1| hypothetical protein MaviaA2_21906 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=293
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/274 (28%), Positives = 118/274 (44%), Gaps = 23/274 (8%)
Query 19 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEPQ 78
VE+T+D IA+ FP L I R+ ++ + +L+ G++ G
Sbjct 8 VELTVDHAWFIAETTGAGSFPWVLAITCPYRDAAERNAFLDRQRAELSEMGLVSDAGLIN 67
Query 79 PTVAEMVETLGRPDRTLEGRW------WRRDIGGVMVRFVVCRR---GDRH--VIAARDG 127
P VAE ++ + P R L+ R+ G ++R +V +R G R V+A R
Sbjct 68 PAVAEWIKVVCFPQRWLDLRYVGPAKGTGEGGGSELLRGIVAQRDGAGGRSITVVALRSA 127
Query 128 DMLVLQL--VAPQVGLAGMVTAVLGPAEPANVEPL---TGVATELAECTTA----SQLTQ 178
++ + L ++T L PA+ + T V E A S++
Sbjct 128 QLITFTAMDIDDPRALVPVLTVGLAQRAPASFDEFSMPTRVGARADERLRAGAPLSEVLD 187
Query 179 YGIAPASARVYAEIVGN-PTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSLPRR 236
Y P SAR E V N P +VEIVA H G + T+ ++D++ GR LVS R
Sbjct 188 YLGIPQSARPVVESVFNGPRSYVEIVAGC-HRDGRHSTTEVGMSIVDAREGRVLVSPSRA 246
Query 237 VGGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 270
G+ +F PGT + A++ L LLP W
Sbjct 247 FDGEWVSTFSPGTPFAIAVAIEHLTALLPDDGWF 280
>gi|342859227|ref|ZP_08715881.1| hypothetical protein MCOL_10123 [Mycobacterium colombiense CECT
3035]
gi|342133468|gb|EGT86671.1| hypothetical protein MCOL_10123 [Mycobacterium colombiense CECT
3035]
Length=318
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/281 (27%), Positives = 118/281 (42%), Gaps = 26/281 (9%)
Query 18 GVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEP 77
VE+T+D IA+ + FP L I R+ ++ + +LT G++ G
Sbjct 7 AVELTVDHAWFIAETIGAGSFPWVLAITSPYRDAAERNAFLDRQKAELTELGLVSEGGLV 66
Query 78 QPTVAEMVETLGRPDRTLEGRWW--RRDI---GGVMVRFVVCRRG------DRHVIAARD 126
P VAE ++ + P+R L+ R+ R+ G ++R VV +R V+A R
Sbjct 67 NPAVAEWIKVVCFPERWLDLRYVGPPREAGEGGAELLRGVVAQRTGVTGKPSLTVVALRS 126
Query 127 GDMLVLQL--VAPQVGLAGMVTAVLGPAEPANVEPL---TGVATELAE-----CTTASQL 176
++ + L ++T L PA + T V E A L
Sbjct 127 AQLITFTAMDIDDPRALVPVLTVGLAQRPPARFDEFSLPTRVGARADERLRSGAPLAEVL 186
Query 177 TQYGIAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSLPR 235
GI ++ RV + P +VEIVA H G + T+ ++D++ GR LVS R
Sbjct 187 DYLGIPQSARRVVESVFNGPRSYVEIVAGC-HRDGRHSTTEVGMSIVDAREGRVLVSPSR 245
Query 236 RVGGDLYGSFLPGTQQNLERALDGLLELLPAGAWLDHTSDH 276
G+ +F PG + A++ L LLP W S+H
Sbjct 246 AFDGEWVSTFAPGAPFAIAVAIEQLTALLPDTGWF---SEH 283
>gi|336460256|gb|EGO39159.1| hypothetical protein MAPs_42840 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=293
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/275 (28%), Positives = 119/275 (44%), Gaps = 23/275 (8%)
Query 18 GVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEP 77
VE+T+D IA+ FP L I R+ ++ + +L+ G++ G
Sbjct 7 AVELTVDHAWFIAETTGAGSFPWVLAITCPYRDAAERNAFLDRQRAELSEMGLVSDAGLI 66
Query 78 QPTVAEMVETLGRPDRTLEGRWW--RRDI----GGVMVRFVVCRR---GDRH--VIAARD 126
P VAE ++ + P R L+ R+ +D G ++R +V +R G R V+A R
Sbjct 67 NPAVAEWIKVVCFPQRWLDLRYVGPAKDTGEGGGSELLRGIVAQRDGAGGRSITVVALRS 126
Query 127 GDMLVLQL--VAPQVGLAGMVTAVLGPAEPANVEPL---TGVATELAECTTA----SQLT 177
++ + L ++T L PA+ + T V E A S++
Sbjct 127 AQLITFTAMDIDDPRALVPVLTVGLAQRAPASFDEFSMPTRVGARADERLRAGAPLSEVL 186
Query 178 QYGIAPASARVYAEIVGN-PTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LVSLPR 235
Y P AR E V N P +VEIVA H G + T+ ++D++ GR LVS R
Sbjct 187 DYLGIPQPARPVVESVFNGPRSYVEIVAGC-HRDGRHSTTEVGMSIVDAREGRVLVSPSR 245
Query 236 RVGGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 270
G+ +F PGT + A++ L LLP W
Sbjct 246 AFDGEWVSTFSPGTPFAIAVAIEHLTALLPDDGWF 280
>gi|226363324|ref|YP_002781106.1| hypothetical protein ROP_39140 [Rhodococcus opacus B4]
gi|226241813|dbj|BAH52161.1| hypothetical protein [Rhodococcus opacus B4]
Length=264
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/271 (29%), Positives = 106/271 (40%), Gaps = 48/271 (17%)
Query 19 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEPQ 78
V +++D M + D L L PV L P D RD + L A+ +L G
Sbjct 16 VTLSLDEMDYLVDTLALDVLPVVLDAAPRYDTYDARDTAFRGAAGTLAARDLLP-GGGVH 74
Query 79 PTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ----- 133
P +A+ + L RP + RW+ + G + R V + V+A R GD V+Q
Sbjct 75 PELADHLRILARPLWEIALRWY---VDGSISRLCVSQGETLSVLALRAGDEFVVQDAGAD 131
Query 134 LVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAEC------------------TTASQ 175
+ AP +G LG EP +V + +L E A
Sbjct 132 IFAPVIG-------ALGAVEPLHVGVVNAPTVQLGEAFDQGGDGKSLAGALAALGVPAVD 184
Query 176 LTQYGIAPASARVYAEIVGNPTGWVEIVASQRHP-GGTTTQTDAAAGVLDSKLGRLVSLP 234
T G A A YAEIVG G Q P GG T V D++ GR+V
Sbjct 185 ATALGNAMAGCTTYAEIVGIVYG-----DGQYDPVGGPVT-------VFDTRAGRIVGTS 232
Query 235 R-RVGGDLYGSFLPGTQQNLERALDGLLELL 264
G + S PGT Q L +AL+ L + L
Sbjct 233 SVSAHGVAWSSLSPGTPQRLRQALESLADRL 263
>gi|111021019|ref|YP_703991.1| hypothetical protein RHA1_ro04036 [Rhodococcus jostii RHA1]
gi|110820549|gb|ABG95833.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=284
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/271 (29%), Positives = 109/271 (41%), Gaps = 48/271 (17%)
Query 19 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEPQ 78
V +++D M + D L L V L P D RD + L A+ +L G
Sbjct 16 VTLSLDEMDYLVDTLALDVLTVVLDAIPRYDTYDARDAAFRGAVDTLAARDLLP-GGGVH 74
Query 79 PTVAEMVETLGRPDRTLEGRWWRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQ----- 133
P + + + L RP + RW+ + G + R + R V+A R GD V+Q
Sbjct 75 PELVDRLRVLARPLWEIALRWY---VDGSISRLCISRGETLSVLALRAGDTYVVQDAGAD 131
Query 134 LVAPQVGLAGMVTAVLGPAEPANVEPLTGVATELAEC--------TTASQLTQYGIAPAS 185
+ AP +G LG A+P NV + +L E + A+ LT G+ A
Sbjct 132 IFAPVIG-------ALGAADPMNVGVVNAPTVQLGEVFDHGGDGKSLAAALTALGVTAAD 184
Query 186 ARV----------YAEIVGNPTGWVEIVASQRHP-GGTTTQTDAAAGVLDSKLGRLVSLP 234
A V YAEIVG G + P GG T V D+ GR+V
Sbjct 185 ATVLGNGMAACTTYAEIVGIVYG-----DGRYDPVGGPVT-------VFDTSAGRIVGTS 232
Query 235 R-RVGGDLYGSFLPGTQQNLERALDGLLELL 264
G + S PGT Q L +AL+ L + L
Sbjct 233 SVSAHGVAWSSLSPGTPQRLRQALESLTDRL 263
>gi|183980576|ref|YP_001848867.1| hypothetical protein MMAR_0548 [Mycobacterium marinum M]
gi|183173902|gb|ACC39012.1| conserved protein [Mycobacterium marinum M]
Length=298
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/284 (27%), Positives = 117/284 (42%), Gaps = 39/284 (13%)
Query 19 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEPQ 78
VE+T++ IA+ + FP L I E R + + + +LT G+L G
Sbjct 8 VELTVENAWFIAEMVGAGTFPWVLAITTPYSDEAQRSAFFARQRDELTQLGLLSSDGVVN 67
Query 79 PTVAEMVETLGRPDRTLEGRWWRRDIGG---VMVRFVVC-------RRGDRH-----VIA 123
P VAE ++ + P+R L+ R+ G ++R +V + G H V+A
Sbjct 68 PAVAEWIKVVCFPERWLDLRYVGPGTGNGGEDLLRGIVAQSAGIMGKAGKAHPSFNTVVA 127
Query 124 ARDGDMLVL--------QLVAPQVGLAGMVTAVLGPAEPANVEPLT------GVATE-LA 168
R+ ++ + + P +G+ L PA E + A E L
Sbjct 128 LRNAQLVTFTAMDIDDPRALVPVLGVG------LSARPPARFEEFSMPMRVGARADERLR 181
Query 169 ECTTASQLTQYGIAPASAR-VYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKL 227
+ ++ Y P SAR V + P +VEIVA G TT TD ++D+
Sbjct 182 SGESLDEVLDYLGIPVSARPVVQAVFSGPRSYVEIVAGCNRDGEHTT-TDVGLSIVDTTA 240
Query 228 GR-LVSLPRRVGGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 270
GR LVS R G+ +F GT A+D L+ LP G W
Sbjct 241 GRVLVSPSRAFDGEWVSTFSAGTPFATAVAIDQLIANLPDGQWF 284
>gi|118616925|ref|YP_905257.1| hypothetical protein MUL_1211 [Mycobacterium ulcerans Agy99]
gi|118569035|gb|ABL03786.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=298
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 76/284 (27%), Positives = 117/284 (42%), Gaps = 39/284 (13%)
Query 19 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEPQ 78
VE+T++ IA+ + FP L I E R ++ + + +LT G+L G
Sbjct 8 VELTVENAWFIAEMVGAGTFPWVLAITTPYSDEAQRSALFARQRDELTQLGLLSSDGVVN 67
Query 79 PTVAEMVETLGRPDRTLEGRWWRRDIGG---VMVRFVVC-------RRGDRH-----VIA 123
P VAE ++ + P+R L+ R+ G ++R +V + G H V+A
Sbjct 68 PAVAEWIKVVCFPERWLDLRYVGPGTGNGGEDLLRGIVAQGAGIMGKAGKAHPSFNTVVA 127
Query 124 ARDGDMLVL--------QLVAPQVGLAGMVTAVLGPAEPANVEPLT------GVATE-LA 168
R ++ + + P +G+ L PA E + A E L
Sbjct 128 LRKAQLVTFTAMDIDDPRALVPVLGVG------LSARPPARFEEFSMPMRVGARADERLR 181
Query 169 ECTTASQLTQYGIAPASAR-VYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKL 227
+ ++ Y P SAR V + P +VEIVA G TT TD ++D+
Sbjct 182 SGESLDEVLDYLGIPVSARPVVQAVFSGPRSYVEIVAGCNRDGEHTT-TDVGLSIVDTTA 240
Query 228 GR-LVSLPRRVGGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 270
GR LVS R G+ +F GT A+D L+ LP G W
Sbjct 241 GRVLVSPSRAFDGEWVSTFSAGTPFATAVAIDQLIANLPDGQWF 284
>gi|296138069|ref|YP_003645312.1| hypothetical protein Tpau_0330 [Tsukamurella paurometabola DSM
20162]
gi|296026203|gb|ADG76973.1| hypothetical protein Tpau_0330 [Tsukamurella paurometabola DSM
20162]
Length=287
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 70/257 (28%), Positives = 105/257 (41%), Gaps = 30/257 (11%)
Query 39 PVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGR 98
P+ L + PN+ + D + V V L A G++D G P VA + L P + R
Sbjct 34 PIVLAVHPNVYRPDDQSAVDLAVLPGLIAAGLVDADGAIDPEVARWLRALQAPAAEIALR 93
Query 99 WWRRDIGGVMVRFVVCRRGDRHVIAARDGDMLVLQLVAPQ-----VGLAGMVTAVLGPAE 153
+ G +R + R D V+ R D+L LQ + V VLG +
Sbjct 94 VFD---GDSALRGAIVRHDDLVVVVFRHDDLLTLQGYRTDGEDFDSTVVDPVWRVLGSCD 150
Query 154 PANVEPLTGVATELAECTTA---------------SQLTQYGIAPASARVYAEIVGNPTG 198
PA+ + LT A EL E + +L ++ + P + V +
Sbjct 151 PADFDSLTLGAAELREIVSMYNPASTDPRGEREFRGRLREHDLPPHTVDVLVDAARYSGR 210
Query 199 WVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRR-VGGDLYGSFLPGTQQNLERAL 257
E+V + G TQ A GV+D+ GR++S R GGD PGT++ R
Sbjct 211 RAEVVYHRVDLNGVRTQAQWALGVMDTDQGRVLSTTTRGRGGDNDVILSPGTRR---RFA 267
Query 258 DGLLELLPAG---AWLD 271
+GL EL+ G W D
Sbjct 268 EGLNELVARGGCVGWFD 284
>gi|254821603|ref|ZP_05226604.1| hypothetical protein MintA_16837 [Mycobacterium intracellulare
ATCC 13950]
Length=300
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/279 (27%), Positives = 120/279 (44%), Gaps = 29/279 (10%)
Query 18 GVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDL--RDIVWEQVQRDLTAQGVLDLHG 75
VE+T+D IA+ + FP L I P D R+ ++ + +LT G++ G
Sbjct 7 AVELTVDHAWFIAETIGAGSFPWVLAI--TCPYRDAAERNAFLDRQKAELTQMGLVSEGG 64
Query 76 EPQPTVAEMVETLGRPDRTLEGRWW--RRDIGGV-----MVRFVVCRRG------DRHVI 122
P VAE ++ + P+R L+ R+ +D G ++R +V +R R V+
Sbjct 65 LINPAVAEWIKVVCFPERWLDLRYVGPAKDAGAAGGAGELLRGIVAQRAGAGGRPSRTVV 124
Query 123 AARDGDMLVLQL--VAPQVGLAGMVTAVLGPAEPANVEPLT------GVATE-LAECTTA 173
A R ++ + L ++ L +PA + + A E L
Sbjct 125 ALRSAQLITFTAMDIDDPRALVPVLCVGLAQRQPARFDEFSMPTRAGARADERLRSGAPL 184
Query 174 SQLTQYGIAPASARVYAEIVGNPT-GWVEIVASQRHPGGTTTQTDAAAGVLDSKLGR-LV 231
+++ Y P SAR E V N + +VEIVA H G + T+ ++D+ GR LV
Sbjct 185 AEVLDYLGIPQSARPVVESVFNGSRSYVEIVAGC-HRDGRHSTTEVGMSIVDASEGRVLV 243
Query 232 SLPRRVGGDLYGSFLPGTQQNLERALDGLLELLPAGAWL 270
S R G+ +F PGT + A++ L LP W
Sbjct 244 SPSRAFDGEWVSTFAPGTPFAIAVAIEQLTAQLPDAGWF 282
>gi|317506273|ref|ZP_07964089.1| hypothetical protein HMPREF9336_00458 [Segniliparus rugosus ATCC
BAA-974]
gi|316255431|gb|EFV14685.1| hypothetical protein HMPREF9336_00458 [Segniliparus rugosus ATCC
BAA-974]
Length=304
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/250 (28%), Positives = 111/250 (45%), Gaps = 26/250 (10%)
Query 19 VEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQRDLTAQGVLDLHGEPQ 78
VE+T IAD++ ++P +L I + D + ++++++L A GV+ GE
Sbjct 28 VELTAAQAWFIADQIGAGEYPWSLAITQPFGSPLVADKIADELRQELAALGVIGKDGEID 87
Query 79 PTVAEMVETLGRPDRTLEGRWWRRDIGGV--------MVRFVVCRRGDRHVIAARDGDML 130
VA V T+ R E R R GGV +R +V ++ V+A R G ++
Sbjct 88 QRVATWVRTVCAARRCFEARTVR---GGVPALDARSNQLRTLVAQQDGLTVVAMRAGALV 144
Query 131 VL-QLVAPQV-GLAGMVTAVLGPAEPANVEPLTGVATELAEC--------TTASQLTQYG 180
QL AP LA ++TA L AEPA ++ A+ + + L G
Sbjct 145 TFTQLGAPHPRTLASVLTAGLPGAEPAKFRQFALPTSDGAKADERLRAGVSADAVLAGLG 204
Query 181 IAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTDAAAGVLDSKLGRLVSLPRRV-GG 239
I ++ + P +VEI + + PG + + GVLD+ GR++ P R G
Sbjct 205 IPEEASAALRAMFAGPRSYVEI-SFRSKPG---SAENIGIGVLDTVAGRVLVAPSRAPDG 260
Query 240 DLYGSFLPGT 249
+F PGT
Sbjct 261 QWVSTFSPGT 270
>gi|296393174|ref|YP_003658058.1| hypothetical protein Srot_0747 [Segniliparus rotundus DSM 44985]
gi|296180321|gb|ADG97227.1| hypothetical protein Srot_0747 [Segniliparus rotundus DSM 44985]
Length=328
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/276 (25%), Positives = 115/276 (42%), Gaps = 22/276 (7%)
Query 4 PSAAGRAGTADNVVGVEVTIDGMLVIADRLHLVDFPVTLGIRPNIPQEDLRDIVWEQVQR 63
P + R+ T D+ VE+T+ ++A+ + ++P +L I + + V V++
Sbjct 28 PRSTSRSATPDSFDAVELTLHQAWLVAELVGAGEYPSSLFITAPFAPGHVAEPVISHVRQ 87
Query 64 DLTAQGVLDLHGEPQPTVAEMVETLGRPDRTLEGRWWR-----RDIGGVMVRFVVCRRGD 118
+L GV+ G+ VA V + + E R R D+G + +
Sbjct 88 ELVELGVIGPDGKVDKRVASWVSAVCAAQQFFEARTVRGDKNVMDVGSNQLHAFIAHNDS 147
Query 119 RHVIAARDGDMLVL-QLVAPQ-VGLAGMVTAVLGPAEPANVEPL---TGVATELAE---- 169
+ V+A R G ++ QL +P LA ++TA L A+PA T + E
Sbjct 148 QTVVAMRAGGLVTFTQLGSPHPKTLASVLTAGLPGAKPAKFRQFALPTAAGAKADERLRR 207
Query 170 -CTTASQLTQYGIAPASARVYAEIVGNPTGWVEIVASQRHPGGTTTQTD-AAAGVLDSKL 227
+ L + G++ + ++ +VEI G +TD GVLD+ L
Sbjct 208 GAAPEAVLAELGLSEEARTTLKAMLDGRRSFVEISF-----GARLRKTDRVGIGVLDTAL 262
Query 228 GRLVSLPRRV-GGDLYGSFLPGTQQNLERALDGLLE 262
GR++ P R G +F PGT + A+ L E
Sbjct 263 GRVLVAPSRAPDGQWLSTFSPGTTPAIAAAVQQLAE 298
Lambda K H
0.318 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 452136608080
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40