BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3878 Length=280 Score E Sequences producing significant alignments: (Bits) Value gi|15611014|ref|NP_218395.1| hypothetical protein Rv3878 [Mycoba... 530 6e-149 gi|31795052|ref|NP_857545.1| hypothetical protein Mb3908 [Mycoba... 529 2e-148 gi|254233366|ref|ZP_04926692.1| conserved hypothetical alanine r... 529 2e-148 gi|15843509|ref|NP_338546.1| hypothetical protein MT3992 [Mycoba... 526 1e-147 gi|340628850|ref|YP_004747302.1| hypothetical protein MCAN_39001... 468 6e-130 gi|289756012|ref|ZP_06515390.1| conserved hypothetical alanine r... 422 3e-116 gi|289747721|ref|ZP_06507099.1| conserved hypothetical protein [... 322 4e-86 gi|240168358|ref|ZP_04747017.1| hypothetical protein MkanA1_0353... 183 3e-44 gi|183985424|ref|YP_001853715.1| hypothetical protein MMAR_5453 ... 164 2e-38 gi|183984323|ref|YP_001852614.1| hypothetical protein MMAR_4352 ... 144 1e-32 gi|118619683|ref|YP_908015.1| hypothetical protein MUL_4594 [Myc... 141 9e-32 gi|183981351|ref|YP_001849642.1| hypothetical protein MMAR_1328 ... 65.1 1e-08 gi|183980230|ref|YP_001848521.1| hypothetical protein MMAR_0197 ... 64.7 1e-08 gi|118618032|ref|YP_906364.1| hypothetical protein MUL_2551 [Myc... 64.7 1e-08 gi|145221358|ref|YP_001132036.1| hypothetical protein Mflv_0763 ... 62.4 7e-08 gi|315441758|ref|YP_004074637.1| hypothetical protein Mspyr1_006... 60.5 3e-07 gi|120401110|ref|YP_950939.1| hypothetical protein Mvan_0082 [My... 59.7 5e-07 gi|118468706|ref|YP_884487.1| translation initiation factor IF-2... 45.8 0.007 gi|108799435|ref|YP_639632.1| hypothetical protein Mmcs_2468 [My... 45.1 0.013 gi|126435089|ref|YP_001070780.1| hypothetical protein Mjls_2505 ... 43.5 0.039 >gi|15611014|ref|NP_218395.1| hypothetical protein Rv3878 [Mycobacterium tuberculosis H37Rv] gi|148663745|ref|YP_001285268.1| hypothetical protein MRA_3917 [Mycobacterium tuberculosis H37Ra] gi|148825086|ref|YP_001289840.1| hypothetical protein TBFG_13913 [Mycobacterium tuberculosis F11] 63 more sequence titles Length=280 Score = 530 bits (1366), Expect = 6e-149, Method: Compositional matrix adjust. Identities = 280/280 (100%), Positives = 280/280 (100%), Gaps = 0/280 (0%) Query 1 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG Sbjct 1 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 Query 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS 120 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS Sbjct 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS 120 Query 121 TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA 180 TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA Sbjct 121 TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA 180 Query 181 QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ 240 QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ Sbjct 181 QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ 240 Query 241 PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL 280 PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL Sbjct 241 PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL 280 >gi|31795052|ref|NP_857545.1| hypothetical protein Mb3908 [Mycobacterium bovis AF2122/97] gi|31620650|emb|CAD96094.1| CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium bovis AF2122/97] Length=280 Score = 529 bits (1363), Expect = 2e-148, Method: Compositional matrix adjust. Identities = 279/280 (99%), Positives = 280/280 (100%), Gaps = 0/280 (0%) Query 1 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAIN+TMPSIESLVSDGLPG Sbjct 1 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINKTMPSIESLVSDGLPG 60 Query 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS 120 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS Sbjct 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS 120 Query 121 TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA 180 TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA Sbjct 121 TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA 180 Query 181 QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ 240 QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ Sbjct 181 QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ 240 Query 241 PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL 280 PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL Sbjct 241 PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL 280 >gi|254233366|ref|ZP_04926692.1| conserved hypothetical alanine rich protein [Mycobacterium tuberculosis C] gi|254366421|ref|ZP_04982465.1| conserved hypothetical alanine rich protein [Mycobacterium tuberculosis str. Haarlem] gi|124603159|gb|EAY61434.1| conserved hypothetical alanine rich protein [Mycobacterium tuberculosis C] gi|134151933|gb|EBA43978.1| conserved hypothetical alanine rich protein [Mycobacterium tuberculosis str. Haarlem] gi|323717461|gb|EGB26665.1| alanine rich protein [Mycobacterium tuberculosis CDC1551A] Length=280 Score = 529 bits (1362), Expect = 2e-148, Method: Compositional matrix adjust. Identities = 279/280 (99%), Positives = 279/280 (99%), Gaps = 0/280 (0%) Query 1 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG Sbjct 1 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 Query 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS 120 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS Sbjct 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS 120 Query 121 TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA 180 TPVSQVTTQLGETAAELAPRVVA VPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA Sbjct 121 TPVSQVTTQLGETAAELAPRVVAKVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA 180 Query 181 QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ 240 QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ Sbjct 181 QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ 240 Query 241 PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL 280 PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL Sbjct 241 PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL 280 >gi|15843509|ref|NP_338546.1| hypothetical protein MT3992 [Mycobacterium tuberculosis CDC1551] gi|13883884|gb|AAK48360.1| hypothetical protein MT3992 [Mycobacterium tuberculosis CDC1551] Length=280 Score = 526 bits (1356), Expect = 1e-147, Method: Compositional matrix adjust. Identities = 278/280 (99%), Positives = 278/280 (99%), Gaps = 0/280 (0%) Query 1 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 MAEPLAVDPTGLSAAAAKLAGLVFPQ PAPIAVSGTDSVVAAINETMPSIESLVSDGLPG Sbjct 1 MAEPLAVDPTGLSAAAAKLAGLVFPQXPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 Query 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS 120 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS Sbjct 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS 120 Query 121 TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA 180 TPVSQVTTQLGETAAELAPRVVA VPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA Sbjct 121 TPVSQVTTQLGETAAELAPRVVAKVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA 180 Query 181 QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ 240 QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ Sbjct 181 QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ 240 Query 241 PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL 280 PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL Sbjct 241 PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL 280 >gi|340628850|ref|YP_004747302.1| hypothetical protein MCAN_39001 [Mycobacterium canettii CIPT 140010059] gi|340007040|emb|CCC46231.1| conserved hypothetical alanine rich protein [Mycobacterium canettii CIPT 140010059] Length=279 Score = 468 bits (1203), Expect = 6e-130, Method: Compositional matrix adjust. Identities = 262/268 (98%), Positives = 264/268 (99%), Gaps = 1/268 (0%) Query 1 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 MAEPLAVDPTGLSAAAAKLAGLVFPQ PAPIAVSGTDSVVAAINETMPSIESLVSDGLPG Sbjct 1 MAEPLAVDPTGLSAAAAKLAGLVFPQLPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 Query 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS 120 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVG QPSQATQLLS Sbjct 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVG-QPSQATQLLS 119 Query 121 TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA 180 TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQ A Sbjct 120 TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQGA 179 Query 181 QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ 240 QGGSGPMPAQLASAEKPATEQAEPVHE TNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ Sbjct 180 QGGSGPMPAQLASAEKPATEQAEPVHEATNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ 239 Query 241 PGGGVPAQAMDTGAGARPAASPLAAPVD 268 PGGGVPAQAMDTGAGARP+ASPLAAPV+ Sbjct 240 PGGGVPAQAMDTGAGARPSASPLAAPVE 267 >gi|289756012|ref|ZP_06515390.1| conserved hypothetical alanine rich protein [Mycobacterium tuberculosis EAS054] gi|289696599|gb|EFD64028.1| conserved hypothetical alanine rich protein [Mycobacterium tuberculosis EAS054] Length=223 Score = 422 bits (1084), Expect = 3e-116, Method: Compositional matrix adjust. Identities = 222/223 (99%), Positives = 223/223 (100%), Gaps = 0/223 (0%) Query 58 LPGVKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQ 117 +PGVKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQ Sbjct 1 MPGVKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQ 60 Query 118 LLSTPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAA 177 LLSTPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAA Sbjct 61 LLSTPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAA 120 Query 178 QSAQGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASP 237 QSAQGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASP Sbjct 121 QSAQGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASP 180 Query 238 GQQPGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL 280 GQQPGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL Sbjct 181 GQQPGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL 223 >gi|289747721|ref|ZP_06507099.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289688249|gb|EFD55737.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] Length=168 Score = 322 bits (825), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 168/168 (100%), Positives = 168/168 (100%), Gaps = 0/168 (0%) Query 1 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG Sbjct 1 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 Query 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS 120 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS Sbjct 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS 120 Query 121 TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQT 168 TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQT Sbjct 121 TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQT 168 >gi|240168358|ref|ZP_04747017.1| hypothetical protein MkanA1_03537 [Mycobacterium kansasii ATCC 12478] Length=268 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 128/219 (59%), Positives = 150/219 (69%), Gaps = 24/219 (10%) Query 1 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 MAEPLAVDP L AA +KLA LVFP PAPIA +G+D V AAINETMP IESLVSDGLPG Sbjct 1 MAEPLAVDPARLIAAGSKLADLVFPTLPAPIAATGSDPVSAAINETMPGIESLVSDGLPG 60 Query 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGE------GLAGVASVGGQPSQ 114 V AAL RTA++M AAD+Y+K DQSLG +L+QY FGS G+ AS+ GQ +Q Sbjct 61 VSAALKRTATSMATAADIYSKADQSLGDALTQYQFGSDGQQREASGVAGAAASLTGQSAQ 120 Query 115 -----ATQLLSTPVSQV-------TTQLGET----AAELAPRVVATVPQLVQLAPHAVQM 158 A QLL P +Q+ +QLG+ A L+PRV ATVPQ+VQLAP A QM Sbjct 121 SLGAPAAQLLGAPAAQLLSAPAGAVSQLGQAVSAQAEALSPRVAATVPQVVQLAPQAGQM 180 Query 159 SQNASPIAQTISQTAQQAAQSAQGGSGPMPAQLASAEKP 197 +Q ASPIAQTISQ+AQQAA + G+ PAQLAS KP Sbjct 181 AQQASPIAQTISQSAQQAASQSSQGA--SPAQLASDTKP 217 >gi|183985424|ref|YP_001853715.1| hypothetical protein MMAR_5453 [Mycobacterium marinum M] gi|183178750|gb|ACC43860.1| conserved hypothetical alanine rich secreted protein [Mycobacterium marinum M] Length=278 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 128/238 (54%), Positives = 146/238 (62%), Gaps = 37/238 (15%) Query 1 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 MAEPLAVDP L AA +KLA LVFP PPAPIA +G D V AAIN+TMP IESLVSDG+PG Sbjct 1 MAEPLAVDPARLIAAGSKLAELVFPAPPAPIAATGGDPVSAAINDTMPGIESLVSDGMPG 60 Query 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGL------AGVASVGGQPSQ 114 V AAL RTAS+M+ AAD+YAK DQ+LG +L+QY FG G+ L A S GQ Q Sbjct 61 VTAALKRTASSMSTAADIYAKADQALGDALTQYQFGGDGQALGASGANAVAQSQAGQTVQ 120 Query 115 ---------------------ATQLLSTPVSQVTTQLGET----AAELAPRVVATVPQLV 149 AT LL P + TQ+GE A L+PRV AT+PQLV Sbjct 121 SLAAPAAGLLGAPVAQALAAPATGLLGVPAA-AATQIGEAVSAQAEALSPRVAATIPQLV 179 Query 150 QLAPHAVQMSQNASPIAQTISQTAQQAAQSAQGGSGPMPAQLASAEKPATEQAEPVHE 207 QLAP A QM+Q ASPIAQTISQ+AQQ + PAQL S KP E AE E Sbjct 180 QLAPQAGQMAQQASPIAQTISQSAQQGSSQGG----AAPAQLVSDTKP-DEDAELADE 232 >gi|183984323|ref|YP_001852614.1| hypothetical protein MMAR_4352 [Mycobacterium marinum M] gi|183177649|gb|ACC42759.1| conserved hypothetical alanine and proline rich protein [Mycobacterium marinum M] Length=260 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 94/204 (47%), Positives = 120/204 (59%), Gaps = 18/204 (8%) Query 1 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 MAEPLAVDP GL AA +L GLVFP PPAPI +GTD++ AIN MP+IES V+D LP Sbjct 1 MAEPLAVDPAGLGAAGTRLRGLVFPTPPAPIVAAGTDALSVAINTAMPNIESSVTDLLPS 60 Query 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAG--VASVGGQ------- 111 KA + TAS+M AAD+Y K D+SLG +LSQ+ F S L G V GQ Sbjct 61 AKADMANTASSMATAADIYTKVDESLGENLSQHQFRGSAPILTGSTVTDQAGQFVDSMAT 120 Query 112 -----PSQATQLLSTPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIA 166 +A Q + T + Q++ Q+ E AA++A PQL QL A ++Q ASP+A Sbjct 121 SAWQWADRARQGVETLIDQLSPQISEVAAQVAE----AGPQLAQLGSQAAFVAQYASPMA 176 Query 167 QTISQTAQQAAQSAQGGSGPMPAQ 190 Q+I Q+ QQ +A G PAQ Sbjct 177 QSIGQSTQQIVSTASQAGGAAPAQ 200 >gi|118619683|ref|YP_908015.1| hypothetical protein MUL_4594 [Mycobacterium ulcerans Agy99] gi|118571793|gb|ABL06544.1| conserved hypothetical alanine and proline rich protein [Mycobacterium ulcerans Agy99] Length=260 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 91/201 (46%), Positives = 117/201 (59%), Gaps = 12/201 (5%) Query 1 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 MAEPLAVDP GL A +L GLVFP PPA I +GTD++ AIN MP+IES V+D LP Sbjct 1 MAEPLAVDPAGLGAVGTRLRGLVFPTPPALIVAAGTDALSVAINTAMPNIESSVTDLLPS 60 Query 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS 120 KA + TAS+M AAD+Y K D+SLG +LSQ+ F S L G ++V Q Q Q ++ Sbjct 61 AKADMANTASSMATAADIYTKVDESLGENLSQHQFRGSAPILTG-STVTDQAGQFVQSMA 119 Query 121 TPVSQ-----------VTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTI 169 T Q + QL +E+A +V PQL QL A ++Q ASP+AQ+I Sbjct 120 TSAWQWADRARQGVETLIDQLSPQISEVAAQVAEAGPQLAQLGSQAAFVAQYASPMAQSI 179 Query 170 SQTAQQAAQSAQGGSGPMPAQ 190 Q+ QQ +A G PAQ Sbjct 180 GQSTQQIVSTASQAGGAAPAQ 200 >gi|183981351|ref|YP_001849642.1| hypothetical protein MMAR_1328 [Mycobacterium marinum M] gi|183174677|gb|ACC39787.1| conserved hypothetical alanine rich protein [Mycobacterium marinum M] Length=198 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/98 (52%), Positives = 62/98 (64%), Gaps = 0/98 (0%) Query 1 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 MA+ L +D + L A LA L P PP PI +G DS AAIN +P IES V+D LP Sbjct 1 MAKELVIDSSRLKIAGIDLAELTLPTPPPPIVATGLDSASAAINAILPIIESPVADSLPV 60 Query 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSS 98 V +ALT+T SN AAA +YA+ DQSLG L Q+ F S+ Sbjct 61 VNSALTKTGSNFVAAAAIYAEADQSLGEQLGQFQFRSA 98 >gi|183980230|ref|YP_001848521.1| hypothetical protein MMAR_0197 [Mycobacterium marinum M] gi|183173556|gb|ACC38666.1| conserved hypothetical alanine and proline rich protein [Mycobacterium marinum M] Length=115 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/93 (41%), Positives = 49/93 (53%), Gaps = 0/93 (0%) Query 3 EPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPGVK 62 P+ VD L+AA L GL FP PP P D V A NE +P I V D L + Sbjct 6 NPVTVDAPVLAAAGDALRGLSFPSPPKPPIGLEMDYAVIAANEVLPHIYFAVKDVLNTAQ 65 Query 63 AALTRTASNMNAAADVYAKTDQSLGTSLSQYAF 95 + L + +N+ AA+ Y TD++LG LSQY F Sbjct 66 STLHQLGANIVTAANTYTNTDKTLGEQLSQYKF 98 >gi|118618032|ref|YP_906364.1| hypothetical protein MUL_2551 [Mycobacterium ulcerans Agy99] gi|118570142|gb|ABL04893.1| conserved hypothetical alanine rich protein [Mycobacterium ulcerans Agy99] Length=198 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/98 (52%), Positives = 62/98 (64%), Gaps = 0/98 (0%) Query 1 MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPG 60 MA+ L +D + L A LA L P PP PI +G DS AAIN +P IES V+D LP Sbjct 1 MAKELVIDSSRLKIAGIDLAELTLPTPPPPILATGLDSASAAINAILPIIESPVADSLPV 60 Query 61 VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSS 98 V +ALT+T SN AAA +YA+ DQSLG L Q+ F S+ Sbjct 61 VNSALTKTGSNFVAAAAIYAEADQSLGEQLGQFQFRSA 98 >gi|145221358|ref|YP_001132036.1| hypothetical protein Mflv_0763 [Mycobacterium gilvum PYR-GCK] gi|145213844|gb|ABP43248.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=241 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/91 (46%), Positives = 55/91 (61%), Gaps = 2/91 (2%) Query 4 PLAVDPTGLSAA--AAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPGV 61 PL+VDPT LSAA A K + L P+ PAP GTD + AI +P+IE+ ++ LP + Sbjct 8 PLSVDPTQLSAAGGALKSSALDLPEAPAPFMPVGTDPLSVAIIGQIPAIETPIATQLPLI 67 Query 62 KAALTRTASNMNAAADVYAKTDQSLGTSLSQ 92 KA T TASN+ AA YA TD+ ++ Q Sbjct 68 KAEATTTASNVEDAAQAYAATDEQNSAAIDQ 98 >gi|315441758|ref|YP_004074637.1| hypothetical protein Mspyr1_00680 [Mycobacterium sp. Spyr1] gi|315260061|gb|ADT96802.1| hypothetical protein Mspyr1_00680 [Mycobacterium sp. Spyr1] Length=241 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/91 (44%), Positives = 54/91 (60%), Gaps = 2/91 (2%) Query 4 PLAVDPTGLSAA--AAKLAGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPGV 61 PL+VDP LSAA A K + L P+ PAP GTD + AI +P+IE+ ++ LP + Sbjct 8 PLSVDPAQLSAAGGALKSSALDLPEAPAPFMPVGTDPLSVAIIGQIPAIETPIATQLPLI 67 Query 62 KAALTRTASNMNAAADVYAKTDQSLGTSLSQ 92 KA T TASN+ AA YA TD+ ++ Q Sbjct 68 KAEATTTASNVEDAAQAYAATDEQNSAAIDQ 98 >gi|120401110|ref|YP_950939.1| hypothetical protein Mvan_0082 [Mycobacterium vanbaalenii PYR-1] gi|119953928|gb|ABM10933.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=239 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/91 (42%), Positives = 55/91 (61%), Gaps = 2/91 (2%) Query 4 PLAVDPTGLSAAAAKL--AGLVFPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPGV 61 PL+VDP LSAA L + PQ PAP GTD + AAI +P++E+ ++ LP + Sbjct 8 PLSVDPEELSAAGGALLDSARELPQAPAPFNPVGTDPLSAAIIGQIPAVEAPIATQLPLI 67 Query 62 KAALTRTASNMNAAADVYAKTDQSLGTSLSQ 92 +A T TA N+ +AA VYA+TD G ++ + Sbjct 68 QAQATSTAQNVVSAAQVYAETDARNGAAIHE 98 >gi|118468706|ref|YP_884487.1| translation initiation factor IF-2 protein [Mycobacterium smegmatis str. MC2 155] gi|118169993|gb|ABK70889.1| translation initiation factor IF-2 protein [Mycobacterium smegmatis str. MC2 155] Length=233 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/138 (28%), Positives = 65/138 (48%), Gaps = 10/138 (7%) Query 24 FPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPGVKAALTRTASNMNAAADVYAKTD 83 P+PP P GTD + A+ + +E+ +G+ KA TA + AAD Y ++D Sbjct 8 IPEPPDPFKTEGTDPLSKALADKTWQVEAPFIEGIGKTKAEAQETARRIQEAADKYEQSD 67 Query 84 QSLGTSL--SQYAF-------GSSGEGLAGVASVGGQPSQATQLLSTPVSQVTTQLGETA 134 +++ +L S F G+S GL G+ + Q +QV TQ+ + A Sbjct 68 RTIAENLQSSTGRFDASTGTEGTSQGGLQGLEQLQQM-MQMPMQAVQMAAQVPTQMAQMA 126 Query 135 AELAPRVVATVPQLVQLA 152 A++ V+ V Q+ Q++ Sbjct 127 AQVPQTVMQGVQQIGQMS 144 >gi|108799435|ref|YP_639632.1| hypothetical protein Mmcs_2468 [Mycobacterium sp. MCS] gi|119868548|ref|YP_938500.1| hypothetical protein Mkms_2513 [Mycobacterium sp. KMS] gi|108769854|gb|ABG08576.1| hypothetical protein Mmcs_2468 [Mycobacterium sp. MCS] gi|119694637|gb|ABL91710.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=273 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/69 (34%), Positives = 37/69 (54%), Gaps = 0/69 (0%) Query 24 FPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPGVKAALTRTASNMNAAADVYAKTD 83 P+P P+ SGTD++ A+ IE + +G+P KA TA N+ AA +Y ++D Sbjct 27 IPEPLQPLVTSGTDALSLALQSKTQEIELPLIEGMPKTKAEALATAENIIRAAALYEQSD 86 Query 84 QSLGTSLSQ 92 Q + L + Sbjct 87 QQIADQLRK 95 >gi|126435089|ref|YP_001070780.1| hypothetical protein Mjls_2505 [Mycobacterium sp. JLS] gi|126234889|gb|ABN98289.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=278 Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/63 (35%), Positives = 35/63 (56%), Gaps = 0/63 (0%) Query 24 FPQPPAPIAVSGTDSVVAAINETMPSIESLVSDGLPGVKAALTRTASNMNAAADVYAKTD 83 P+P P+ SGTD++ A+ IE + +G+P KA TA N+ AA +Y ++D Sbjct 27 IPEPLQPLVTSGTDALSLALQSKTQEIELPLIEGMPKTKAEALATAENIIRAAALYEQSD 86 Query 84 QSL 86 Q + Sbjct 87 QQI 89 Lambda K H 0.305 0.120 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 442782057568 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40